Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012602.t1 | XP_024637279.1 | 96.9 | 293 | 9 | 0 | 1 | 293 | 1 | 293 | 3.00E-166 | 594.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012602.t1 | Q7ZVZ7 | 46.7 | 261 | 126 | 6 | 8 | 257 | 29 | 287 | 8.4e-61 | 235.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012602.t1 | A0A396IJ93 | 96.9 | 293 | 9 | 0 | 1 | 293 | 1 | 293 | 2.1e-166 | 594.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene042261 | MS.gene012602 | PPI |
| MS.gene012602 | MS.gene33543 | PPI |
| MS.gene074198 | MS.gene012602 | PPI |
| MS.gene074512 | MS.gene012602 | PPI |
| MS.gene012602 | MS.gene80896 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012602.t1 | MTR_7g032640 | 65.019 | 263 | 91 | 1 | 1 | 262 | 1 | 263 | 3.54e-126 | 364 |
| MS.gene012602.t1 | MTR_3g075410 | 63.498 | 263 | 95 | 1 | 1 | 262 | 1 | 263 | 1.02e-124 | 361 |
| MS.gene012602.t1 | MTR_7g017430 | 65.283 | 265 | 91 | 1 | 1 | 264 | 1 | 265 | 1.62e-123 | 358 |
| MS.gene012602.t1 | MTR_8g037335 | 60.544 | 294 | 105 | 4 | 1 | 287 | 1 | 290 | 1.88e-122 | 354 |
| MS.gene012602.t1 | MTR_5g029210 | 62.191 | 283 | 98 | 3 | 1 | 276 | 1 | 281 | 2.08e-121 | 353 |
| MS.gene012602.t1 | MTR_6g018930 | 60.000 | 280 | 99 | 2 | 1 | 267 | 1 | 280 | 9.51e-120 | 348 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012602.t1 | AT4G31020 | 76.871 | 294 | 67 | 1 | 1 | 293 | 1 | 294 | 3.45e-172 | 478 |
| MS.gene012602.t1 | AT4G31020 | 76.871 | 294 | 67 | 1 | 1 | 293 | 1 | 294 | 3.45e-172 | 478 |
| MS.gene012602.t1 | AT2G24320 | 73.469 | 294 | 76 | 2 | 1 | 293 | 1 | 293 | 2.51e-166 | 463 |
| MS.gene012602.t1 | AT2G24320 | 73.519 | 287 | 74 | 2 | 8 | 293 | 1 | 286 | 1.72e-162 | 453 |
| MS.gene012602.t1 | AT3G01690 | 63.736 | 273 | 98 | 1 | 1 | 272 | 1 | 273 | 6.41e-128 | 369 |
| MS.gene012602.t1 | AT5G14390 | 62.724 | 279 | 103 | 1 | 1 | 278 | 1 | 279 | 3.51e-127 | 367 |
| MS.gene012602.t1 | AT3G30380 | 61.324 | 287 | 106 | 3 | 1 | 284 | 1 | 285 | 3.89e-124 | 359 |
| MS.gene012602.t1 | AT3G30380 | 61.324 | 287 | 106 | 3 | 1 | 284 | 1 | 285 | 9.47e-124 | 359 |
| MS.gene012602.t1 | AT5G38220 | 61.484 | 283 | 107 | 2 | 1 | 283 | 1 | 281 | 1.82e-121 | 351 |
| MS.gene012602.t1 | AT5G38220 | 61.484 | 283 | 107 | 2 | 1 | 283 | 1 | 281 | 1.82e-121 | 351 |
| MS.gene012602.t1 | AT1G66900 | 59.929 | 282 | 99 | 3 | 1 | 278 | 1 | 272 | 4.53e-119 | 343 |
| MS.gene012602.t1 | AT4G24760 | 60.456 | 263 | 103 | 1 | 1 | 262 | 1 | 263 | 2.05e-118 | 344 |
| MS.gene012602.t1 | AT1G32190 | 58.993 | 278 | 104 | 1 | 1 | 268 | 1 | 278 | 2.12e-116 | 341 |
| MS.gene012602.t1 | AT1G13610 | 57.778 | 270 | 108 | 2 | 1 | 265 | 1 | 269 | 1.39e-108 | 319 |
| MS.gene012602.t1 | AT5G38220 | 62.802 | 207 | 76 | 1 | 1 | 207 | 1 | 206 | 4.72e-85 | 255 |
| MS.gene012602.t1 | AT1G32190 | 64.744 | 156 | 55 | 0 | 113 | 268 | 38 | 193 | 1.11e-70 | 222 |
| MS.gene012602.t1 | AT1G13610 | 65.132 | 152 | 53 | 0 | 114 | 265 | 18 | 169 | 8.21e-68 | 212 |
Find 73 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGCTATTCTTTCAGGATTA+AGG | 0.129442 | 8.1:+2253208 | MS.gene012602:CDS |
| CTTCACAGTGCTATTCTTTC+AGG | 0.153165 | 8.1:+2253201 | MS.gene012602:CDS |
| TCATGGTAATGCTGCTGATT+TGG | 0.244610 | 8.1:+2252474 | MS.gene012602:CDS |
| AACCAAAATGTGACCTTTAC+AGG | 0.254772 | 8.1:-2253240 | None:intergenic |
| AATTTATTGAGGAATGAATA+TGG | 0.259059 | 8.1:+2253081 | MS.gene012602:CDS |
| TATGACCCCTTGTGGGTTAA+AGG | 0.264120 | 8.1:+2255298 | MS.gene012602:CDS |
| GATGGGGTGTTGAAGATTTC+CGG | 0.280498 | 8.1:+2252343 | MS.gene012602:CDS |
| CTTAGGATTTGTTAAAAGAT+AGG | 0.296850 | 8.1:+2255471 | MS.gene012602:CDS |
| CATGGTAATGCTGCTGATTT+GGG | 0.302622 | 8.1:+2252475 | MS.gene012602:CDS |
| TCCTAAGCATTTGGTATGTC+TGG | 0.309595 | 8.1:-2255455 | None:intergenic |
| TGCTATTCTTTCAGGATTAA+GGG | 0.314061 | 8.1:+2253209 | MS.gene012602:CDS |
| AGCTATGATTATTCTGGATA+TGG | 0.314458 | 8.1:+2252868 | MS.gene012602:intron |
| ACCCTGTAAAGGTCACATTT+TGG | 0.331867 | 8.1:+2253238 | MS.gene012602:CDS |
| TTCAGAACATAGACAAAATT+CGG | 0.348913 | 8.1:+2253358 | MS.gene012602:intron |
| TTTAACAAATCCTAAGCATT+TGG | 0.350665 | 8.1:-2255464 | None:intergenic |
| GAGTGAGTTGTTTGTTTGCT+TGG | 0.379199 | 8.1:-2255411 | None:intergenic |
| AATATAGTAAACCTTGCAAA+AGG | 0.412344 | 8.1:-2252445 | None:intergenic |
| GTTCTCATGGAAAGCGGTTG+TGG | 0.413811 | 8.1:+2255257 | MS.gene012602:CDS |
| GAAATTGTTGATTGTTCTCA+TGG | 0.418735 | 8.1:+2255244 | MS.gene012602:CDS |
| AGACACAAAAGGAGGCAATA+AGG | 0.435883 | 8.1:+2252399 | MS.gene012602:CDS |
| CGCAAATACTTGATGTACTC+GGG | 0.439325 | 8.1:-2255349 | None:intergenic |
| ACTTCGTATGTTGGTGGCTC+CGG | 0.442509 | 8.1:-2252304 | None:intergenic |
| TTCTCATGGAAAGCGGTTGT+GGG | 0.445570 | 8.1:+2255258 | MS.gene012602:CDS |
| TCTTTGTAAACTTCGTATGT+TGG | 0.468696 | 8.1:-2252313 | None:intergenic |
| TTGTAAACTTCGTATGTTGG+TGG | 0.474036 | 8.1:-2252310 | None:intergenic |
| TAATGTCACGGGAACGGTGG+CGG | 0.478677 | 8.1:+2252261 | MS.gene012602:CDS |
| TTTGTTTGCTTGGCTAGTGA+TGG | 0.479942 | 8.1:-2255401 | None:intergenic |
| TATGGTCAATCGGTTGGAAG+TGG | 0.482533 | 8.1:+2253129 | MS.gene012602:CDS |
| TGTACTCGGGGAAAGTTTCA+AGG | 0.485576 | 8.1:-2255336 | None:intergenic |
| GTTTACAAAGATAACGATGA+TGG | 0.495815 | 8.1:+2252325 | MS.gene012602:CDS |
| TCGTATGTTGGTGGCTCCGG+CGG | 0.498129 | 8.1:-2252301 | None:intergenic |
| AGGCTGTATATAATTTATTG+AGG | 0.499243 | 8.1:+2253070 | MS.gene012602:CDS |
| TCCAGACATACCAAATGCTT+AGG | 0.502115 | 8.1:+2255454 | MS.gene012602:CDS |
| GTTCATATTGTAGACACAAA+AGG | 0.503249 | 8.1:+2252388 | MS.gene012602:CDS |
| TCTGGATATGGACGTTCCAC+AGG | 0.507640 | 8.1:+2252880 | MS.gene012602:CDS |
| GCGCAAATACTTGATGTACT+CGG | 0.516953 | 8.1:-2255350 | None:intergenic |
| TTTACAAAGATAACGATGAT+GGG | 0.521409 | 8.1:+2252326 | MS.gene012602:CDS |
| CCCTTGTGGGTTAAAGGTGG+AGG | 0.522765 | 8.1:+2255304 | MS.gene012602:CDS |
| CTGTAAATGGGTAATGTCAC+GGG | 0.526702 | 8.1:+2252250 | None:intergenic |
| TTTACTATATTGTACTCTCA+TGG | 0.531187 | 8.1:+2252457 | MS.gene012602:CDS |
| TGTCTGGAATCAGTAATACT+AGG | 0.534886 | 8.1:-2255439 | None:intergenic |
| TTATATGTGTTGAACTCAGA+TGG | 0.543757 | 8.1:-2253039 | None:intergenic |
| AAGGGTCTTGTACCCTGTAA+AGG | 0.543937 | 8.1:+2253227 | MS.gene012602:CDS |
| ATAAGGTTGTTGCTACGTTG+TGG | 0.553608 | 8.1:+2252416 | MS.gene012602:CDS |
| CGTATGTTGGTGGCTCCGGC+GGG | 0.555441 | 8.1:-2252300 | None:intergenic |
| ATATAGTAAACCTTGCAAAA+GGG | 0.557024 | 8.1:-2252444 | None:intergenic |
| ATATGGACGTTCCACAGGTA+AGG | 0.559847 | 8.1:+2252885 | MS.gene012602:CDS |
| TCTGTAAATGGGTAATGTCA+CGG | 0.560811 | 8.1:+2252249 | None:intergenic |
| TCTAAATTGCAAAAGTTGAG+AGG | 0.565951 | 8.1:+2253171 | MS.gene012602:CDS |
| ACCAAAATGTGACCTTTACA+GGG | 0.571897 | 8.1:-2253239 | None:intergenic |
| GGAAAGTTTCAAGGTTGCAA+TGG | 0.579596 | 8.1:-2255327 | None:intergenic |
| AAGTGGACCGACGCTACACT+TGG | 0.579761 | 8.1:+2253146 | MS.gene012602:CDS |
| GCCTCCACCTTTAACCCACA+AGG | 0.587124 | 8.1:-2255305 | None:intergenic |
| AATTCGGTATGTCAACTGTC+CGG | 0.588609 | 8.1:+2253374 | MS.gene012602:CDS |
| ATCTTCGTGTTAATATCATG+AGG | 0.591275 | 8.1:+2252533 | MS.gene012602:CDS |
| AATGGGTAATGTCACGGGAA+CGG | 0.599267 | 8.1:+2252255 | None:intergenic |
| GAGCTCTAAGCTCAATGAAG+AGG | 0.600995 | 8.1:-2252510 | None:intergenic |
| GCGGTTGTGGGAGCTCTCAA+AGG | 0.609084 | 8.1:+2255270 | MS.gene012602:CDS |
| GGGTAATGTCACGGGAACGG+TGG | 0.610257 | 8.1:+2252258 | MS.gene012602:CDS |
| TGAGTTACTTACCTTACCTG+TGG | 0.616944 | 8.1:-2252896 | None:intergenic |
| GGATTGTTTACAGGGAACAG+AGG | 0.618205 | 8.1:+2255219 | MS.gene012602:intron |
| GACCCCTTGTGGGTTAAAGG+TGG | 0.621379 | 8.1:+2255301 | MS.gene012602:CDS |
| CAACACATATAACGACATAG+AGG | 0.626950 | 8.1:+2253050 | MS.gene012602:CDS |
| TTAGAAGCCAAGTGTAGCGT+CGG | 0.628834 | 8.1:-2253153 | None:intergenic |
| GCGCAAGTTTATCAACACAA+TGG | 0.634079 | 8.1:+2255369 | MS.gene012602:CDS |
| GTTGAAGATTTCCGGCACGA+CGG | 0.635860 | 8.1:+2252351 | MS.gene012602:CDS |
| CTTACATGTATAACAAACAC+CGG | 0.637648 | 8.1:-2253393 | None:intergenic |
| TTGATTGTTCTCATGGAAAG+CGG | 0.658164 | 8.1:+2255251 | MS.gene012602:CDS |
| CTCCACCTTTAACCCACAAG+GGG | 0.660635 | 8.1:-2255303 | None:intergenic |
| CCTCCACCTTTAACCCACAA+GGG | 0.665071 | 8.1:-2255304 | None:intergenic |
| TTACAAAGATAACGATGATG+GGG | 0.668143 | 8.1:+2252327 | MS.gene012602:CDS |
| CATATTGTAGACACAAAAGG+AGG | 0.669657 | 8.1:+2252391 | MS.gene012602:CDS |
| GCAAATACTTGATGTACTCG+GGG | 0.680722 | 8.1:-2255348 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAATTATTTTCTAATTGA+GGG | - | chr8.1:2253587-2253606 | None:intergenic | 10.0% |
| !! | ACAATACAATAATGAAATTT+AGG | + | chr8.1:2254420-2254439 | MS.gene012602:intron | 15.0% |
| !! | GAAACATAAAATTGTATATA+AGG | - | chr8.1:2252573-2252592 | None:intergenic | 15.0% |
| !! | TATATTATATAAATCTATGC+TGG | - | chr8.1:2254771-2254790 | None:intergenic | 15.0% |
| !!! | AAATAATTTTACAATAGAAG+AGG | + | chr8.1:2253596-2253615 | MS.gene012602:intron | 15.0% |
| !!! | GTAAAATTATTTTCTAATTG+AGG | - | chr8.1:2253588-2253607 | None:intergenic | 15.0% |
| !!! | TTTATATAATATATGCCTTT+TGG | + | chr8.1:2254778-2254797 | MS.gene012602:intron | 15.0% |
| !!! | TTTCTATACTTTGTTATAAA+AGG | - | chr8.1:2254290-2254309 | None:intergenic | 15.0% |
| !! | AATTTATTGAGGAATGAATA+TGG | + | chr8.1:2253081-2253100 | MS.gene012602:CDS | 20.0% |
| !! | AGATCTTTCTAAGTATTTAT+TGG | + | chr8.1:2252827-2252846 | MS.gene012602:intron | 20.0% |
| !! | TACCTATTAACATAATCTTA+AGG | - | chr8.1:2254369-2254388 | None:intergenic | 20.0% |
| !! | TACCTTAAGATTATGTTAAT+AGG | + | chr8.1:2254364-2254383 | MS.gene012602:intron | 20.0% |
| !! | TCATTATTGTATTGTTCTAA+AGG | - | chr8.1:2254415-2254434 | None:intergenic | 20.0% |
| !! | TTAAGATTATGTTAATAGGT+AGG | + | chr8.1:2254368-2254387 | MS.gene012602:intron | 20.0% |
| !!! | AAAAGTATATAGTACCTTTT+TGG | + | chr8.1:2254046-2254065 | MS.gene012602:intron | 20.0% |
| !!! | ATGTTTTATTTCGATTGTTT+AGG | + | chr8.1:2254222-2254241 | MS.gene012602:intron | 20.0% |
| !!! | TGTTTTATTTCGATTGTTTA+GGG | + | chr8.1:2254223-2254242 | MS.gene012602:intron | 20.0% |
| ! | AAATAAAACATTTCAGTGGA+TGG | - | chr8.1:2254213-2254232 | None:intergenic | 25.0% |
| ! | AATATAGTAAACCTTGCAAA+AGG | - | chr8.1:2252448-2252467 | None:intergenic | 25.0% |
| ! | ACCAATACTATTGATAGAAT+GGG | + | chr8.1:2254834-2254853 | MS.gene012602:intron | 25.0% |
| ! | AGGCTGTATATAATTTATTG+AGG | + | chr8.1:2253070-2253089 | MS.gene012602:CDS | 25.0% |
| ! | ATATAGTAAACCTTGCAAAA+GGG | - | chr8.1:2252447-2252466 | None:intergenic | 25.0% |
| ! | ATCGAAATAAAACATTTCAG+TGG | - | chr8.1:2254217-2254236 | None:intergenic | 25.0% |
| ! | CATCTGATATGATAGATTTA+GGG | - | chr8.1:2254119-2254138 | None:intergenic | 25.0% |
| ! | GAATAAAGAAACAATAACCA+TGG | - | chr8.1:2252644-2252663 | None:intergenic | 25.0% |
| ! | GATCAAATATAACCAGAAAA+GGG | - | chr8.1:2253468-2253487 | None:intergenic | 25.0% |
| ! | TACCAATACTATTGATAGAA+TGG | + | chr8.1:2254833-2254852 | MS.gene012602:intron | 25.0% |
| ! | TCAATTTCAGTATTTCTTCT+AGG | - | chr8.1:2254917-2254936 | None:intergenic | 25.0% |
| ! | TCATCTGATATGATAGATTT+AGG | - | chr8.1:2254120-2254139 | None:intergenic | 25.0% |
| ! | TGATCAAATATAACCAGAAA+AGG | - | chr8.1:2253469-2253488 | None:intergenic | 25.0% |
| ! | TTCAGAACATAGACAAAATT+CGG | + | chr8.1:2253358-2253377 | MS.gene012602:intron | 25.0% |
| ! | TTCTATCTATGTATGTAATC+AGG | + | chr8.1:2253427-2253446 | MS.gene012602:intron | 25.0% |
| ! | TTGCTTAGTCTCATTATTTA+CGG | + | chr8.1:2255126-2255145 | MS.gene012602:intron | 25.0% |
| ! | TTTAACAAATCCTAAGCATT+TGG | - | chr8.1:2255467-2255486 | None:intergenic | 25.0% |
| ! | TTTACAAAGATAACGATGAT+GGG | + | chr8.1:2252326-2252345 | MS.gene012602:CDS | 25.0% |
| ! | TTTACTATATTGTACTCTCA+TGG | + | chr8.1:2252457-2252476 | MS.gene012602:CDS | 25.0% |
| !! | AAGAAGATGTGTTTCTTTTA+TGG | - | chr8.1:2253996-2254015 | None:intergenic | 25.0% |
| !! | ATTATATTTTTCTCCCTGTT+TGG | + | chr8.1:2254337-2254356 | MS.gene012602:intron | 25.0% |
| !! | CAATAATGAAATTTAGGTTC+TGG | + | chr8.1:2254426-2254445 | MS.gene012602:intron | 25.0% |
| !! | TAAACACCAAAAATGTTTTG+CGG | - | chr8.1:2254863-2254882 | None:intergenic | 25.0% |
| !! | TGATCAATAGTTTCTTTTTG+AGG | + | chr8.1:2253483-2253502 | MS.gene012602:intron | 25.0% |
| !!! | AATAGTTTTGTTTCTGCTTA+TGG | + | chr8.1:2255198-2255217 | MS.gene012602:intron | 25.0% |
| !!! | AATTTGTTGTGCATATTTAG+TGG | + | chr8.1:2254706-2254725 | MS.gene012602:intron | 25.0% |
| !!! | AGGTACTATATACTTTTTCT+AGG | - | chr8.1:2254043-2254062 | None:intergenic | 25.0% |
| !!! | CAAGAAGATTTGATTTTGTA+TGG | + | chr8.1:2253111-2253130 | MS.gene012602:CDS | 25.0% |
| !!! | GGTACTATATACTTTTTCTA+GGG | - | chr8.1:2254042-2254061 | None:intergenic | 25.0% |
| !!! | TATCAATAGTATTGGTAGAA+CGG | - | chr8.1:2254830-2254849 | None:intergenic | 25.0% |
| !!! | TTTGATTTTGTATGGTCAAT+CGG | + | chr8.1:2253119-2253138 | MS.gene012602:CDS | 25.0% |
| !!! | TTTTTTTTTTGAATTGGCCA+TGG | + | chr8.1:2252624-2252643 | MS.gene012602:intron | 25.0% |
| AAAAACACCAAGATTGAACT+TGG | - | chr8.1:2252717-2252736 | None:intergenic | 30.0% | |
| AAACTCCGTGCTAAAAATTA+TGG | - | chr8.1:2253311-2253330 | None:intergenic | 30.0% | |
| AAATCATCATCAAGCTAAAC+AGG | - | chr8.1:2253540-2253559 | None:intergenic | 30.0% | |
| ACCCATTCTATCAATAGTAT+TGG | - | chr8.1:2254838-2254857 | None:intergenic | 30.0% | |
| AGCTATGATTATTCTGGATA+TGG | + | chr8.1:2252868-2252887 | MS.gene012602:intron | 30.0% | |
| AGTCTCATTATTTACGGATT+CGG | + | chr8.1:2255132-2255151 | MS.gene012602:intron | 30.0% | |
| ATCTTCGTGTTAATATCATG+AGG | + | chr8.1:2252533-2252552 | MS.gene012602:CDS | 30.0% | |
| CTTAAGGTATATACCAAACA+GGG | - | chr8.1:2254353-2254372 | None:intergenic | 30.0% | |
| CTTACATGTATAACAAACAC+CGG | - | chr8.1:2253396-2253415 | None:intergenic | 30.0% | |
| GATAGATAAATGCTACCAAA+AGG | - | chr8.1:2254796-2254815 | None:intergenic | 30.0% | |
| GTTCATATTGTAGACACAAA+AGG | + | chr8.1:2252388-2252407 | MS.gene012602:CDS | 30.0% | |
| GTTTACAAAGATAACGATGA+TGG | + | chr8.1:2252325-2252344 | MS.gene012602:CDS | 30.0% | |
| TAAAAGCCTCAGTTTGAATA+AGG | + | chr8.1:2253865-2253884 | MS.gene012602:intron | 30.0% | |
| TATGAAACTCCAACTGAAAA+GGG | + | chr8.1:2254524-2254543 | MS.gene012602:intron | 30.0% | |
| TCTAAATTGCAAAAGTTGAG+AGG | + | chr8.1:2253171-2253190 | MS.gene012602:CDS | 30.0% | |
| TCTTAAGGTATATACCAAAC+AGG | - | chr8.1:2254354-2254373 | None:intergenic | 30.0% | |
| TCTTTGTAAACTTCGTATGT+TGG | - | chr8.1:2252316-2252335 | None:intergenic | 30.0% | |
| TGCTATTCTTTCAGGATTAA+GGG | + | chr8.1:2253209-2253228 | MS.gene012602:CDS | 30.0% | |
| TTACAAAGATAACGATGATG+GGG | + | chr8.1:2252327-2252346 | MS.gene012602:CDS | 30.0% | |
| TTAGGTTAACATGCATGAAA+AGG | - | chr8.1:2254630-2254649 | None:intergenic | 30.0% | |
| TTATATGTGTTGAACTCAGA+TGG | - | chr8.1:2253042-2253061 | None:intergenic | 30.0% | |
| TTCATTGATATATCCGAATC+AGG | - | chr8.1:2253775-2253794 | None:intergenic | 30.0% | |
| TTTCATGCATGTTAACCTAA+AGG | + | chr8.1:2254630-2254649 | MS.gene012602:intron | 30.0% | |
| ! | AGATGTGTTTCTTTTATGGA+TGG | - | chr8.1:2253992-2254011 | None:intergenic | 30.0% |
| ! | CTTTTATATGTGAGTACACA+GGG | - | chr8.1:2253851-2253870 | None:intergenic | 30.0% |
| ! | GAAATTGTTGATTGTTCTCA+TGG | + | chr8.1:2255244-2255263 | MS.gene012602:CDS | 30.0% |
| ! | TTTTATATGTGAGTACACAG+GGG | - | chr8.1:2253850-2253869 | None:intergenic | 30.0% |
| ! | TTTTGCAGCTATGATTATTC+TGG | + | chr8.1:2252862-2252881 | MS.gene012602:intron | 30.0% |
| !! | AGAAAGCATCACAATTGATA+TGG | + | chr8.1:2255161-2255180 | MS.gene012602:intron | 30.0% |
| !! | ATCAATAGTATTGGTAGAAC+GGG | - | chr8.1:2254829-2254848 | None:intergenic | 30.0% |
| AACCAAAATGTGACCTTTAC+AGG | - | chr8.1:2253243-2253262 | None:intergenic | 35.0% | |
| AATAAGGTCCAAAGAATCGA+TGG | + | chr8.1:2253881-2253900 | MS.gene012602:intron | 35.0% | |
| AATACCAGATGGGAAAACAA+TGG | - | chr8.1:2253747-2253766 | None:intergenic | 35.0% | |
| ACAAACTTTGACTAGGAATG+TGG | - | chr8.1:2253805-2253824 | None:intergenic | 35.0% | |
| ACCAAAATGTGACCTTTACA+GGG | - | chr8.1:2253242-2253261 | None:intergenic | 35.0% | |
| ATACCAGATGGGAAAACAAT+GGG | - | chr8.1:2253746-2253765 | None:intergenic | 35.0% | |
| ATCAGGATTTGAATACCAGA+TGG | - | chr8.1:2253758-2253777 | None:intergenic | 35.0% | |
| ATGAAACTCCAACTGAAAAG+GGG | + | chr8.1:2254525-2254544 | MS.gene012602:intron | 35.0% | |
| ATGAGTGCAGTTCAATCTTA+TGG | + | chr8.1:2254553-2254572 | MS.gene012602:intron | 35.0% | |
| ATTGGGGAGATTTCAGAATA+TGG | + | chr8.1:2254973-2254992 | MS.gene012602:intron | 35.0% | |
| CAAACTTTGACTAGGAATGT+GGG | - | chr8.1:2253804-2253823 | None:intergenic | 35.0% | |
| CAACACATATAACGACATAG+AGG | + | chr8.1:2253050-2253069 | MS.gene012602:CDS | 35.0% | |
| CATATTGTAGACACAAAAGG+AGG | + | chr8.1:2252391-2252410 | MS.gene012602:CDS | 35.0% | |
| CTATGAAACTCCAACTGAAA+AGG | + | chr8.1:2254523-2254542 | MS.gene012602:intron | 35.0% | |
| CTGGTATTCAAATCCTGATT+CGG | + | chr8.1:2253759-2253778 | MS.gene012602:intron | 35.0% | |
| GAAGACAGAGGAATTTAATG+AGG | - | chr8.1:2253953-2253972 | None:intergenic | 35.0% | |
| GTATTCGTTTGTAGTGAGTA+GGG | + | chr8.1:2254577-2254596 | MS.gene012602:intron | 35.0% | |
| GTCTCATTATTTACGGATTC+GGG | + | chr8.1:2255133-2255152 | MS.gene012602:intron | 35.0% | |
| GTTGCCTAGTTTATGAGATA+TGG | + | chr8.1:2255008-2255027 | MS.gene012602:intron | 35.0% | |
| GTTGTAGTCATCGTTGTAAA+TGG | + | chr8.1:2255049-2255068 | MS.gene012602:intron | 35.0% | |
| TCAGGATTTGAATACCAGAT+GGG | - | chr8.1:2253757-2253776 | None:intergenic | 35.0% | |
| TGTATTCGTTTGTAGTGAGT+AGG | + | chr8.1:2254576-2254595 | MS.gene012602:intron | 35.0% | |
| TGTTGTGCATATTTAGTGGA+TGG | + | chr8.1:2254710-2254729 | MS.gene012602:intron | 35.0% | |
| TTCACTTCCAAGTTCAATCT+TGG | + | chr8.1:2252707-2252726 | MS.gene012602:intron | 35.0% | |
| TTGATTGTTCTCATGGAAAG+CGG | + | chr8.1:2255251-2255270 | MS.gene012602:CDS | 35.0% | |
| TTGGCCATATCTCATAAACT+AGG | - | chr8.1:2255015-2255034 | None:intergenic | 35.0% | |
| TTGTAAACTTCGTATGTTGG+TGG | - | chr8.1:2252313-2252332 | None:intergenic | 35.0% | |
| TTTGGACCTTATTCAAACTG+AGG | - | chr8.1:2253874-2253893 | None:intergenic | 35.0% | |
| ! | ATTTTGTATGGTCAATCGGT+TGG | + | chr8.1:2253123-2253142 | MS.gene012602:CDS | 35.0% |
| ! | CAATTGAGTTTTCTTTCTGG+AGG | + | chr8.1:2254177-2254196 | MS.gene012602:intron | 35.0% |
| ! | CTGCTTATGGATTGTTTACA+GGG | + | chr8.1:2255211-2255230 | MS.gene012602:intron | 35.0% |
| ! | CTTTTCAGTTGGAGTTTCAT+AGG | - | chr8.1:2254525-2254544 | None:intergenic | 35.0% |
| ! | GAATTTAATGAGGAGAGCAT+GGG | - | chr8.1:2253943-2253962 | None:intergenic | 35.0% |
| ! | GCAGAGGTATAAGAATTGTA+AGG | - | chr8.1:2253289-2253308 | None:intergenic | 35.0% |
| ! | GCTCAATTGAGTTTTCTTTC+TGG | + | chr8.1:2254174-2254193 | MS.gene012602:intron | 35.0% |
| ! | GCTTTTATATGTGAGTACAC+AGG | - | chr8.1:2253852-2253871 | None:intergenic | 35.0% |
| ! | GTGCTATTCTTTCAGGATTA+AGG | + | chr8.1:2253208-2253227 | MS.gene012602:CDS | 35.0% |
| ! | TAGATTGCTGTTGTACCTTT+AGG | - | chr8.1:2254648-2254667 | None:intergenic | 35.0% |
| ! | TATTTAGTGGATGGTCATCA+TGG | + | chr8.1:2254719-2254738 | MS.gene012602:intron | 35.0% |
| ! | TCTGCTTATGGATTGTTTAC+AGG | + | chr8.1:2255210-2255229 | MS.gene012602:intron | 35.0% |
| ! | TGTAATTGTGTTCCCTTTTC+TGG | + | chr8.1:2253453-2253472 | MS.gene012602:intron | 35.0% |
| ! | TGTCTGGAATCAGTAATACT+AGG | - | chr8.1:2255442-2255461 | None:intergenic | 35.0% |
| !! | ACCTTTTTGGTGAGTGAAAA+TGG | + | chr8.1:2254059-2254078 | MS.gene012602:intron | 35.0% |
| !! | CCTTTTTGGTGAGTGAAAAT+GGG | + | chr8.1:2254060-2254079 | MS.gene012602:intron | 35.0% |
| !! | TCAATAGTATTGGTAGAACG+GGG | - | chr8.1:2254828-2254847 | None:intergenic | 35.0% |
| !! | TGTAAATGGAGCTGATTTTG+AGG | + | chr8.1:2255063-2255082 | MS.gene012602:intron | 35.0% |
| !! | TTCAGTATTTCTTCTAGGAC+TGG | - | chr8.1:2254912-2254931 | None:intergenic | 35.0% |
| !!! | ACACAGGGGTTATTTTAACT+AGG | - | chr8.1:2253836-2253855 | None:intergenic | 35.0% |
| !!! | CACAGGGGTTATTTTAACTA+GGG | - | chr8.1:2253835-2253854 | None:intergenic | 35.0% |
| !!! | CTCTGCCATAATTTTTAGCA+CGG | + | chr8.1:2253303-2253322 | MS.gene012602:intron | 35.0% |
| AATTACAGAAACACCGCATC+AGG | - | chr8.1:2253516-2253535 | None:intergenic | 40.0% | |
| AATTCCTCTGTCTTCCATGT+CGG | + | chr8.1:2253958-2253977 | MS.gene012602:intron | 40.0% | |
| AATTCGGTATGTCAACTGTC+CGG | + | chr8.1:2253374-2253393 | MS.gene012602:CDS | 40.0% | |
| ACAACGCTATTGCTACATGT+TGG | - | chr8.1:2255034-2255053 | None:intergenic | 40.0% | |
| ACTAGTATTCAAACACCACC+AGG | - | chr8.1:2254250-2254269 | None:intergenic | 40.0% | |
| AGAATAACTAGTGCCCCTAA+TGG | + | chr8.1:2254493-2254512 | MS.gene012602:intron | 40.0% | |
| AGACACAAAAGGAGGCAATA+AGG | + | chr8.1:2252399-2252418 | MS.gene012602:CDS | 40.0% | |
| AGAGCCAACGATACAATCAT+TGG | + | chr8.1:2254955-2254974 | MS.gene012602:intron | 40.0% | |
| AGCAAGCACAAACTTTGACT+AGG | - | chr8.1:2253812-2253831 | None:intergenic | 40.0% | |
| AGCCAACGATACAATCATTG+GGG | + | chr8.1:2254957-2254976 | MS.gene012602:intron | 40.0% | |
| AGGAAAAATATGACCCCTTG+TGG | + | chr8.1:2255290-2255309 | MS.gene012602:CDS | 40.0% | |
| ATAAGGTTGTTGCTACGTTG+TGG | + | chr8.1:2252416-2252435 | MS.gene012602:CDS | 40.0% | |
| ATTTCGATTGTTTAGGGACC+TGG | + | chr8.1:2254229-2254248 | MS.gene012602:intron | 40.0% | |
| CGCAAATACTTGATGTACTC+GGG | - | chr8.1:2255352-2255371 | None:intergenic | 40.0% | |
| CGTGCTAAAAATTATGGCAG+AGG | - | chr8.1:2253305-2253324 | None:intergenic | 40.0% | |
| GAGCCAACGATACAATCATT+GGG | + | chr8.1:2254956-2254975 | MS.gene012602:intron | 40.0% | |
| GAGTGAGTTGTTTGTTTGCT+TGG | - | chr8.1:2255414-2255433 | None:intergenic | 40.0% | |
| GCAAATACTTGATGTACTCG+GGG | - | chr8.1:2255351-2255370 | None:intergenic | 40.0% | |
| GCGCAAATACTTGATGTACT+CGG | - | chr8.1:2255353-2255372 | None:intergenic | 40.0% | |
| GCGCAAGTTTATCAACACAA+TGG | + | chr8.1:2255369-2255388 | MS.gene012602:CDS | 40.0% | |
| GGAAAAATATGACCCCTTGT+GGG | + | chr8.1:2255291-2255310 | MS.gene012602:CDS | 40.0% | |
| GGAAAGTTTCAAGGTTGCAA+TGG | - | chr8.1:2255330-2255349 | None:intergenic | 40.0% | |
| GGAATTTAATGAGGAGAGCA+TGG | - | chr8.1:2253944-2253963 | None:intergenic | 40.0% | |
| GGTTAAGTCAAGCTTTCATG+TGG | - | chr8.1:2253566-2253585 | None:intergenic | 40.0% | |
| TACCAGATGGGAAAACAATG+GGG | - | chr8.1:2253745-2253764 | None:intergenic | 40.0% | |
| TCCAGACATACCAAATGCTT+AGG | + | chr8.1:2255454-2255473 | MS.gene012602:CDS | 40.0% | |
| TCCTAAGCATTTGGTATGTC+TGG | - | chr8.1:2255458-2255477 | None:intergenic | 40.0% | |
| TGAAACTCCAACTGAAAAGG+GGG | + | chr8.1:2254526-2254545 | MS.gene012602:intron | 40.0% | |
| TGAGTTACTTACCTTACCTG+TGG | - | chr8.1:2252899-2252918 | None:intergenic | 40.0% | |
| TTCATAGGAGAGGTCCATTA+GGG | - | chr8.1:2254510-2254529 | None:intergenic | 40.0% | |
| TTTCATAGGAGAGGTCCATT+AGG | - | chr8.1:2254511-2254530 | None:intergenic | 40.0% | |
| TTTGTTTGCTTGGCTAGTGA+TGG | - | chr8.1:2255404-2255423 | None:intergenic | 40.0% | |
| ! | ACCCTGTAAAGGTCACATTT+TGG | + | chr8.1:2253238-2253257 | MS.gene012602:CDS | 40.0% |
| ! | CCCATTTTCACTCACCAAAA+AGG | - | chr8.1:2254063-2254082 | None:intergenic | 40.0% |
| ! | CTTCACAGTGCTATTCTTTC+AGG | + | chr8.1:2253201-2253220 | MS.gene012602:CDS | 40.0% |
| ! | GGGTAACCGCAAAACATTTT+TGG | + | chr8.1:2254854-2254873 | MS.gene012602:intron | 40.0% |
| ! | TCATGGTAATGCTGCTGATT+TGG | + | chr8.1:2252474-2252493 | MS.gene012602:CDS | 40.0% |
| !! | ACTTAGTGCCATCGATTCTT+TGG | - | chr8.1:2253892-2253911 | None:intergenic | 40.0% |
| !! | CATGGTAATGCTGCTGATTT+GGG | + | chr8.1:2252475-2252494 | MS.gene012602:CDS | 40.0% |
| !! | CTAGGGCTTTAGAAGAAGAT+AGG | - | chr8.1:2254025-2254044 | None:intergenic | 40.0% |
| !!! | AAAGTTTGCTTTTTTCCCGC+CGG | + | chr8.1:2252285-2252304 | MS.gene012602:CDS | 40.0% |
| ACTCAGATGGCTATCACAGT+TGG | - | chr8.1:2253029-2253048 | None:intergenic | 45.0% | |
| ACTTTGACTAGGAATGTGGG+TGG | - | chr8.1:2253801-2253820 | None:intergenic | 45.0% | |
| ATATGGACGTTCCACAGGTA+AGG | + | chr8.1:2252885-2252904 | MS.gene012602:CDS | 45.0% | |
| CAGTTGGAGTTTCATAGGAG+AGG | - | chr8.1:2254520-2254539 | None:intergenic | 45.0% | |
| CTCCCCAATGATTGTATCGT+TGG | - | chr8.1:2254962-2254981 | None:intergenic | 45.0% | |
| GAAACTCCAACTGAAAAGGG+GGG | + | chr8.1:2254527-2254546 | MS.gene012602:intron | 45.0% | |
| GCTGGATACGAAGTTCCAAT+CGG | - | chr8.1:2254753-2254772 | None:intergenic | 45.0% | |
| GGATTGTTTACAGGGAACAG+AGG | + | chr8.1:2255219-2255238 | MS.gene012602:intron | 45.0% | |
| GGTGAGTGAAAATGGGTACT+GGG | + | chr8.1:2254067-2254086 | MS.gene012602:intron | 45.0% | |
| TATGGTCAATCGGTTGGAAG+TGG | + | chr8.1:2253129-2253148 | MS.gene012602:CDS | 45.0% | |
| TCATAGGAGAGGTCCATTAG+GGG | - | chr8.1:2254509-2254528 | None:intergenic | 45.0% | |
| TGGTGAGTGAAAATGGGTAC+TGG | + | chr8.1:2254066-2254085 | MS.gene012602:intron | 45.0% | |
| TGTACTCGGGGAAAGTTTCA+AGG | - | chr8.1:2255339-2255358 | None:intergenic | 45.0% | |
| TTAGAAGCCAAGTGTAGCGT+CGG | - | chr8.1:2253156-2253175 | None:intergenic | 45.0% | |
| TTCTCATGGAAAGCGGTTGT+GGG | + | chr8.1:2255258-2255277 | MS.gene012602:CDS | 45.0% | |
| ! | AAGGGTCTTGTACCCTGTAA+AGG | + | chr8.1:2253227-2253246 | MS.gene012602:CDS | 45.0% |
| ! | TAGTGGATGGTCATCATGGT+GGG | + | chr8.1:2254723-2254742 | MS.gene012602:intron | 45.0% |
| ! | TATGACCCCTTGTGGGTTAA+AGG | + | chr8.1:2255298-2255317 | MS.gene012602:CDS | 45.0% |
| ! | TGTGGAAACACCCTTTTGCA+AGG | + | chr8.1:2252434-2252453 | MS.gene012602:CDS | 45.0% |
| ! | TTAGTGGATGGTCATCATGG+TGG | + | chr8.1:2254722-2254741 | MS.gene012602:intron | 45.0% |
| ! | TTGAGGCTTTTGTCCTGATG+CGG | + | chr8.1:2253500-2253519 | MS.gene012602:intron | 45.0% |
| !! | GAGCTCTAAGCTCAATGAAG+AGG | - | chr8.1:2252513-2252532 | None:intergenic | 45.0% |
| !! | GATGGGGTGTTGAAGATTTC+CGG | + | chr8.1:2252343-2252362 | MS.gene012602:CDS | 45.0% |
| !!! | TTTTTTTTTTTTTTTTGAAT+TGG | + | chr8.1:2252618-2252637 | MS.gene012602:intron | 5.0% |
| AAAGCCGACATGGAAGACAG+AGG | - | chr8.1:2253965-2253984 | None:intergenic | 50.0% | |
| ATTGGTAGAACGGGGACACA+CGG | - | chr8.1:2254820-2254839 | None:intergenic | 50.0% | |
| CCTCCACCTTTAACCCACAA+GGG | - | chr8.1:2255307-2255326 | None:intergenic | 50.0% | |
| CTCCACCTTTAACCCACAAG+GGG | - | chr8.1:2255306-2255325 | None:intergenic | 50.0% | |
| GTTCTCATGGAAAGCGGTTG+TGG | + | chr8.1:2255257-2255276 | MS.gene012602:CDS | 50.0% | |
| GTTGAAGATTTCCGGCACGA+CGG | + | chr8.1:2252351-2252370 | MS.gene012602:CDS | 50.0% | |
| TCGATTGTTTAGGGACCTGG+TGG | + | chr8.1:2254232-2254251 | MS.gene012602:intron | 50.0% | |
| TCTGGATATGGACGTTCCAC+AGG | + | chr8.1:2252880-2252899 | MS.gene012602:CDS | 50.0% | |
| ! | ATCATGGTGGGATGTCCGAT+TGG | + | chr8.1:2254735-2254754 | MS.gene012602:intron | 50.0% |
| ! | CACCCCATTGTTTTCCCATC+TGG | + | chr8.1:2253740-2253759 | MS.gene012602:intron | 50.0% |
| ! | GAGGAGAGCATGGGATCAAA+TGG | - | chr8.1:2253934-2253953 | None:intergenic | 50.0% |
| ! | GGATGGATCTAAAGCCGACA+TGG | - | chr8.1:2253975-2253994 | None:intergenic | 50.0% |
| !! | ACTTCGTATGTTGGTGGCTC+CGG | - | chr8.1:2252307-2252326 | None:intergenic | 50.0% |
| !! | GAGTGAAAATGGGTACTGGG+TGG | + | chr8.1:2254070-2254089 | MS.gene012602:intron | 50.0% |
| AAGTGGACCGACGCTACACT+TGG | + | chr8.1:2253146-2253165 | MS.gene012602:CDS | 55.0% | |
| ACTCCAACTGAAAAGGGGGG+CGG | + | chr8.1:2254530-2254549 | MS.gene012602:intron | 55.0% | |
| GCCTCCACCTTTAACCCACA+AGG | - | chr8.1:2255308-2255327 | None:intergenic | 55.0% | |
| TAATGTCACGGGAACGGTGG+CGG | + | chr8.1:2252261-2252280 | MS.gene012602:CDS | 55.0% | |
| ! | CCCTTGTGGGTTAAAGGTGG+AGG | + | chr8.1:2255304-2255323 | MS.gene012602:CDS | 55.0% |
| ! | GACCCCTTGTGGGTTAAAGG+TGG | + | chr8.1:2255301-2255320 | MS.gene012602:CDS | 55.0% |
| ! | GACGCTTTTATCCGTCGTGC+CGG | - | chr8.1:2252365-2252384 | None:intergenic | 55.0% |
| GCGGTTGTGGGAGCTCTCAA+AGG | + | chr8.1:2255270-2255289 | MS.gene012602:CDS | 60.0% | |
| GGGTAATGTCACGGGAACGG+TGG | + | chr8.1:2252258-2252277 | MS.gene012602:CDS | 60.0% | |
| ! | CATCCGCCCCCCTTTTCAGT+TGG | - | chr8.1:2254536-2254555 | None:intergenic | 60.0% |
| !! | TCGTATGTTGGTGGCTCCGG+CGG | - | chr8.1:2252304-2252323 | None:intergenic | 60.0% |
| !! | CGTATGTTGGTGGCTCCGGC+GGG | - | chr8.1:2252303-2252322 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 2252256 | 2255492 | 2252256 | ID=MS.gene012602 |
| chr8.1 | mRNA | 2252256 | 2255492 | 2252256 | ID=MS.gene012602.t1;Parent=MS.gene012602 |
| chr8.1 | exon | 2252256 | 2252554 | 2252256 | ID=MS.gene012602.t1.exon1;Parent=MS.gene012602.t1 |
| chr8.1 | CDS | 2252256 | 2252554 | 2252256 | ID=cds.MS.gene012602.t1;Parent=MS.gene012602.t1 |
| chr8.1 | exon | 2252870 | 2252906 | 2252870 | ID=MS.gene012602.t1.exon2;Parent=MS.gene012602.t1 |
| chr8.1 | CDS | 2252870 | 2252906 | 2252870 | ID=cds.MS.gene012602.t1;Parent=MS.gene012602.t1 |
| chr8.1 | exon | 2253039 | 2253275 | 2253039 | ID=MS.gene012602.t1.exon3;Parent=MS.gene012602.t1 |
| chr8.1 | CDS | 2253039 | 2253275 | 2253039 | ID=cds.MS.gene012602.t1;Parent=MS.gene012602.t1 |
| chr8.1 | exon | 2253363 | 2253410 | 2253363 | ID=MS.gene012602.t1.exon4;Parent=MS.gene012602.t1 |
| chr8.1 | CDS | 2253363 | 2253410 | 2253363 | ID=cds.MS.gene012602.t1;Parent=MS.gene012602.t1 |
| chr8.1 | exon | 2255232 | 2255492 | 2255232 | ID=MS.gene012602.t1.exon5;Parent=MS.gene012602.t1 |
| chr8.1 | CDS | 2255232 | 2255492 | 2255232 | ID=cds.MS.gene012602.t1;Parent=MS.gene012602.t1 |
| Gene Sequence |
| Protein sequence |
