Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074512.t1 | XP_013451328.1 | 100 | 169 | 0 | 0 | 2 | 170 | 126 | 294 | 1.10E-94 | 356.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074512.t1 | Q7ZVZ7 | 54.8 | 146 | 64 | 2 | 2 | 146 | 143 | 287 | 1.4e-42 | 174.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074512.t1 | A0A072U8F4 | 100.0 | 169 | 0 | 0 | 2 | 170 | 126 | 294 | 7.9e-95 | 356.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049983 | MS.gene074512 | 0.81903 | 1.44E-52 | -1.69E-46 |
| MS.gene051365 | MS.gene074512 | 0.8014 | 9.17E-49 | -1.69E-46 |
| MS.gene052072 | MS.gene074512 | 0.819481 | 1.14E-52 | -1.69E-46 |
| MS.gene052954 | MS.gene074512 | 0.805569 | 1.25E-49 | -1.69E-46 |
| MS.gene053456 | MS.gene074512 | 0.811705 | 6.12E-51 | -1.69E-46 |
| MS.gene057999 | MS.gene074512 | 0.813293 | 2.75E-51 | -1.69E-46 |
| MS.gene058054 | MS.gene074512 | 0.808992 | 2.36E-50 | -1.69E-46 |
| MS.gene058055 | MS.gene074512 | 0.800255 | 1.57E-48 | -1.69E-46 |
| MS.gene059146 | MS.gene074512 | 0.811313 | 7.45E-51 | -1.69E-46 |
| MS.gene059830 | MS.gene074512 | 0.802128 | 6.50E-49 | -1.69E-46 |
| MS.gene06011 | MS.gene074512 | 0.818946 | 1.50E-52 | -1.69E-46 |
| MS.gene060763 | MS.gene074512 | 0.837386 | 5.36E-57 | -1.69E-46 |
| MS.gene060935 | MS.gene074512 | 0.817105 | 3.92E-52 | -1.69E-46 |
| MS.gene060937 | MS.gene074512 | 0.819702 | 1.01E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene074512 | MS.gene33543 | PPI |
| MS.gene074512 | MS.gene012602 | PPI |
| MS.gene074512 | MS.gene042261 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074512.t1 | MTR_6g018930 | 99.145 | 234 | 2 | 0 | 2 | 235 | 126 | 359 | 7.45e-173 | 479 |
| MS.gene074512.t1 | MTR_7g017430 | 59.912 | 227 | 89 | 1 | 2 | 226 | 114 | 340 | 6.89e-92 | 275 |
| MS.gene074512.t1 | MTR_3g075410 | 60.435 | 230 | 85 | 4 | 2 | 229 | 114 | 339 | 3.76e-90 | 271 |
| MS.gene074512.t1 | MTR_7g032640 | 53.333 | 255 | 91 | 3 | 2 | 228 | 114 | 368 | 5.57e-90 | 270 |
| MS.gene074512.t1 | MTR_8g037335 | 66.000 | 150 | 51 | 0 | 2 | 151 | 119 | 268 | 6.54e-63 | 200 |
| MS.gene074512.t1 | MTR_5g029210 | 66.000 | 150 | 51 | 0 | 2 | 151 | 119 | 268 | 9.89e-62 | 198 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074512.t1 | AT5G38220 | 73.391 | 233 | 53 | 3 | 3 | 235 | 113 | 336 | 6.48e-118 | 340 |
| MS.gene074512.t1 | AT5G38220 | 73.391 | 233 | 53 | 3 | 3 | 235 | 113 | 336 | 6.48e-118 | 340 |
| MS.gene074512.t1 | AT3G01690 | 56.911 | 246 | 87 | 4 | 2 | 228 | 114 | 359 | 3.43e-89 | 268 |
| MS.gene074512.t1 | AT5G14390 | 55.512 | 254 | 86 | 5 | 2 | 228 | 114 | 367 | 6.98e-89 | 267 |
| MS.gene074512.t1 | AT4G24760 | 58.772 | 228 | 89 | 2 | 2 | 229 | 114 | 336 | 9.14e-89 | 266 |
| MS.gene074512.t1 | AT1G66900 | 79.355 | 155 | 32 | 0 | 3 | 157 | 116 | 270 | 4.10e-88 | 262 |
| MS.gene074512.t1 | AT3G30380 | 54.365 | 252 | 95 | 4 | 2 | 233 | 113 | 364 | 2.94e-87 | 263 |
| MS.gene074512.t1 | AT3G30380 | 55.785 | 242 | 87 | 4 | 2 | 223 | 113 | 354 | 1.74e-86 | 262 |
| MS.gene074512.t1 | AT2G24320 | 62.778 | 180 | 63 | 2 | 2 | 177 | 106 | 285 | 9.28e-81 | 243 |
| MS.gene074512.t1 | AT2G24320 | 62.778 | 180 | 63 | 2 | 2 | 177 | 113 | 292 | 9.30e-81 | 244 |
| MS.gene074512.t1 | AT4G31020 | 72.667 | 150 | 41 | 0 | 2 | 151 | 114 | 263 | 1.68e-79 | 241 |
| MS.gene074512.t1 | AT4G31020 | 72.667 | 150 | 41 | 0 | 2 | 151 | 114 | 263 | 1.68e-79 | 241 |
| MS.gene074512.t1 | AT1G13610 | 50.218 | 229 | 107 | 3 | 3 | 229 | 18 | 241 | 9.99e-76 | 230 |
| MS.gene074512.t1 | AT1G13610 | 50.435 | 230 | 107 | 3 | 2 | 229 | 117 | 341 | 1.06e-75 | 233 |
| MS.gene074512.t1 | AT1G32190 | 65.772 | 149 | 51 | 0 | 1 | 149 | 37 | 185 | 1.39e-68 | 214 |
| MS.gene074512.t1 | AT1G32190 | 66.216 | 148 | 50 | 0 | 2 | 149 | 123 | 270 | 4.01e-67 | 213 |
| MS.gene074512.t1 | AT5G38220 | 86.170 | 94 | 13 | 0 | 3 | 96 | 113 | 206 | 2.99e-54 | 174 |
Find 53 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCAGAATATTGATAAAAT+TGG | 0.185085 | 6.1:-4885836 | MS.gene074512:intron |
| ACGGCTATCTAAACTGTTTC+TGG | 0.191277 | 6.1:+4885087 | None:intergenic |
| ACTCTCAACCCTGACAAAAT+TGG | 0.287077 | 6.1:+4885979 | None:intergenic |
| GGAGAAGAAAGGGGTTAGTT+TGG | 0.287342 | 6.1:-4884994 | MS.gene074512:CDS |
| CCATTTGCAGTAGTTGGTTT+AGG | 0.308515 | 6.1:+4885223 | None:intergenic |
| GTGTCTGTACAAATTTCTTT+AGG | 0.321791 | 6.1:+4885254 | None:intergenic |
| ACCCTGTAAAACGGACATAT+TGG | 0.325725 | 6.1:-4885951 | MS.gene074512:CDS |
| TCACCCCGTATTGTTCCTTC+AGG | 0.367696 | 6.1:+4886103 | None:intergenic |
| CATGGTCAAATGTCCTGTTT+TGG | 0.370656 | 6.1:-4885813 | MS.gene074512:CDS |
| ATATTGGTTTGATATTTATA+AGG | 0.372086 | 6.1:-4885935 | MS.gene074512:intron |
| CAGATCGTGTTGATAGGTTT+AGG | 0.384200 | 6.1:-4885015 | MS.gene074512:CDS |
| CGAGATTTCTCTGGTTTGTC+CGG | 0.387877 | 6.1:+4885046 | None:intergenic |
| TCAGAACCATTTGCAGTAGT+TGG | 0.389809 | 6.1:+4885217 | None:intergenic |
| AAACTGTTTCTGGAAGCTTC+AGG | 0.395568 | 6.1:+4885097 | None:intergenic |
| GATAGGTTTAGGAGAAGAAA+GGG | 0.412852 | 6.1:-4885004 | MS.gene074512:CDS |
| GATGAACAATTGATATTGTA+TGG | 0.413194 | 6.1:-4886078 | MS.gene074512:CDS |
| GTGCTCATTCGAGATTTCTC+TGG | 0.419922 | 6.1:+4885037 | None:intergenic |
| TGAGCACAGATCGTGTTGAT+AGG | 0.423847 | 6.1:-4885021 | MS.gene074512:CDS |
| TGATAGGTTTAGGAGAAGAA+AGG | 0.429077 | 6.1:-4885005 | MS.gene074512:CDS |
| CCACACTTGACCTTGCTTCA+AGG | 0.439617 | 6.1:-4886035 | MS.gene074512:CDS |
| CTTACATGGATAACCAAAAC+AGG | 0.445236 | 6.1:+4885800 | None:intergenic |
| CCTAAACCAACTACTGCAAA+TGG | 0.453101 | 6.1:-4885223 | MS.gene074512:CDS |
| TCAGAAGTACTAGAAGTTCC+AGG | 0.454447 | 6.1:+4885136 | None:intergenic |
| TACTGCAAATGGTTCTGAAA+AGG | 0.478929 | 6.1:-4885212 | MS.gene074512:CDS |
| TTTAGGTGTTTAATGAACTC+CGG | 0.483788 | 6.1:+4885271 | None:intergenic |
| AAATGCCTGAAGGAACAATA+CGG | 0.508399 | 6.1:-4886108 | MS.gene074512:CDS |
| CCCTTGTGGGTAAGTGGTGG+TGG | 0.509585 | 6.1:-4885316 | MS.gene074512:CDS |
| AAGAAATTTGTACAGACACT+TGG | 0.516658 | 6.1:-4885250 | MS.gene074512:CDS |
| TTTCGCATGGAAAACAGCTA+TGG | 0.520095 | 6.1:-4885363 | MS.gene074512:CDS |
| GAGTACTATACCCTGTAAAA+CGG | 0.536738 | 6.1:-4885960 | MS.gene074512:CDS |
| TTAGGTGTTTAATGAACTCC+GGG | 0.543171 | 6.1:+4885272 | None:intergenic |
| AATGCCTGAAGGAACAATAC+GGG | 0.546260 | 6.1:-4886107 | MS.gene074512:CDS |
| AGTAAAGTATGAACCCTTGT+GGG | 0.560848 | 6.1:-4885329 | MS.gene074512:CDS |
| GCAAGCAAAGAATCAGAACC+TGG | 0.561386 | 6.1:-4885154 | MS.gene074512:CDS |
| CCTTGAAGCAAGGTCAAGTG+TGG | 0.568843 | 6.1:+4886035 | None:intergenic |
| GAATATTGATAAAATTGGCA+TGG | 0.570904 | 6.1:-4885831 | MS.gene074512:CDS |
| GCGTATGTATTATATTCAGT+TGG | 0.571206 | 6.1:+4886150 | None:intergenic |
| TTGTAATCTTGAGCTTTACC+CGG | 0.585035 | 6.1:-4885290 | MS.gene074512:CDS |
| ATATTGTATGGTCAATCTGT+TGG | 0.585616 | 6.1:-4886066 | MS.gene074512:CDS |
| TATGAACCCTTGTGGGTAAG+TGG | 0.589615 | 6.1:-4885322 | MS.gene074512:CDS |
| TTCGCATGGAAAACAGCTAT+GGG | 0.589749 | 6.1:-4885362 | MS.gene074512:CDS |
| ATAGGTTTAGGAGAAGAAAG+GGG | 0.589775 | 6.1:-4885003 | MS.gene074512:CDS |
| AAGTAAAGTATGAACCCTTG+TGG | 0.594672 | 6.1:-4885330 | MS.gene074512:CDS |
| GAAGTTGTAGATGTTTCGCA+TGG | 0.597653 | 6.1:-4885376 | MS.gene074512:CDS |
| TATGGTCAATCTGTTGGCAG+CGG | 0.597789 | 6.1:-4886060 | MS.gene074512:CDS |
| TCCACCACCACTTACCCACA+AGG | 0.634470 | 6.1:+4885315 | None:intergenic |
| AGCTGCATATAAATGCCTGA+AGG | 0.634850 | 6.1:-4886118 | MS.gene074512:CDS |
| ATTCTGATATCCTTGAAGCA+AGG | 0.650913 | 6.1:+4886025 | None:intergenic |
| CTTGAAGCAAGGTCAAGTGT+GGG | 0.653272 | 6.1:+4886036 | None:intergenic |
| GAACCCTTGTGGGTAAGTGG+TGG | 0.659525 | 6.1:-4885319 | MS.gene074512:CDS |
| TCAAGGATATCAGAATTGAG+AGG | 0.684211 | 6.1:-4886018 | MS.gene074512:CDS |
| ATGCCTGAAGGAACAATACG+GGG | 0.708481 | 6.1:-4886106 | MS.gene074512:CDS |
| CCACCACCACTTACCCACAA+GGG | 0.716054 | 6.1:+4885316 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAATTATTAAATAAAT+AGG | + | chr6.1:4885850-4885869 | None:intergenic | 0.0% |
| !!! | GTAATACTTTTTAAATTTTT+CGG | - | chr6.1:4885776-4885795 | MS.gene074512:intron | 10.0% |
| !!! | TAATACTTTTTAAATTTTTC+GGG | - | chr6.1:4885777-4885796 | MS.gene074512:intron | 10.0% |
| !! | TTTCAGAATATTGATAAAAT+TGG | - | chr6.1:4885480-4885499 | MS.gene074512:intron | 15.0% |
| !!! | ATATTGGTTTGATATTTATA+AGG | - | chr6.1:4885381-4885400 | MS.gene074512:CDS | 15.0% |
| !! | AAAAGAACATTACATATTTG+GGG | + | chr6.1:4885569-4885588 | None:intergenic | 20.0% |
| !! | CAAAAGAACATTACATATTT+GGG | + | chr6.1:4885570-4885589 | None:intergenic | 20.0% |
| !! | CATCATAGTATTAAAAACAT+CGG | + | chr6.1:4885075-4885094 | None:intergenic | 20.0% |
| !! | TCAAAAGAACATTACATATT+TGG | + | chr6.1:4885571-4885590 | None:intergenic | 20.0% |
| !! | TCTTAAAAAGTCTAAAAAAC+CGG | - | chr6.1:4886251-4886270 | MS.gene074512:intron | 20.0% |
| !! | TTACAGATTGTATTTCAATA+TGG | - | chr6.1:4885414-4885433 | MS.gene074512:intron | 20.0% |
| !!! | AAATATGTAATGTTCTTTTG+AGG | - | chr6.1:4885570-4885589 | MS.gene074512:intron | 20.0% |
| !!! | GTTTTTTAGACTTTTTAAGA+CGG | + | chr6.1:4886251-4886270 | None:intergenic | 20.0% |
| !!! | TACTATGATGTTGTTTTTTA+TGG | - | chr6.1:4885085-4885104 | MS.gene074512:CDS | 20.0% |
| ! | AAAGAACATTACATATTTGG+GGG | + | chr6.1:4885568-4885587 | None:intergenic | 25.0% |
| ! | GAATATTGATAAAATTGGCA+TGG | - | chr6.1:4885485-4885504 | MS.gene074512:intron | 25.0% |
| ! | GATGAACAATTGATATTGTA+TGG | - | chr6.1:4885238-4885257 | MS.gene074512:CDS | 25.0% |
| !! | ACTGTTTAGAATTTCATAGA+TGG | - | chr6.1:4885871-4885890 | MS.gene074512:intron | 25.0% |
| !!! | ATTTTTTTTGTCCAATGTCA+GGG | - | chr6.1:4885907-4885926 | MS.gene074512:intron | 25.0% |
| !!! | GTTGTTTTTTATGGTTCTTT+CGG | - | chr6.1:4885094-4885113 | MS.gene074512:CDS | 25.0% |
| !!! | TATTTTTTTTGTCCAATGTC+AGG | - | chr6.1:4885906-4885925 | MS.gene074512:intron | 25.0% |
| AAGAAATTTGTACAGACACT+TGG | - | chr6.1:4886066-4886085 | MS.gene074512:CDS | 30.0% | |
| ATATTGTATGGTCAATCTGT+TGG | - | chr6.1:4885250-4885269 | MS.gene074512:CDS | 30.0% | |
| ATCGAACATTAGCATAAGTT+AGG | - | chr6.1:4885805-4885824 | MS.gene074512:CDS | 30.0% | |
| CATAGTATTAAAAACATCGG+TGG | + | chr6.1:4885072-4885091 | None:intergenic | 30.0% | |
| GCGTATGTATTATATTCAGT+TGG | + | chr6.1:4885169-4885188 | None:intergenic | 30.0% | |
| GTGTCTGTACAAATTTCTTT+AGG | + | chr6.1:4886065-4886084 | None:intergenic | 30.0% | |
| GTTTGGAAATTCATTGGATT+TGG | - | chr6.1:4885669-4885688 | MS.gene074512:intron | 30.0% | |
| TCAATTCTTTGTGACTTATG+TGG | - | chr6.1:4885442-4885461 | MS.gene074512:intron | 30.0% | |
| TCGAACATTAGCATAAGTTA+GGG | - | chr6.1:4885806-4885825 | MS.gene074512:CDS | 30.0% | |
| TTCTCAATTAATAGCGTGTT+TGG | - | chr6.1:4885652-4885671 | MS.gene074512:intron | 30.0% | |
| TTTAGGTGTTTAATGAACTC+CGG | + | chr6.1:4886048-4886067 | None:intergenic | 30.0% | |
| !!! | TACTTTTGAGGTTTTACCAA+TGG | - | chr6.1:4885701-4885720 | MS.gene074512:intron | 30.0% |
| AAATGCCTGAAGGAACAATA+CGG | - | chr6.1:4885208-4885227 | MS.gene074512:CDS | 35.0% | |
| AACATTACATATTTGGGGGA+GGG | + | chr6.1:4885564-4885583 | None:intergenic | 35.0% | |
| AAGTAAAGTATGAACCCTTG+TGG | - | chr6.1:4885986-4886005 | MS.gene074512:CDS | 35.0% | |
| AATTGATGCACCAACAACAA+AGG | + | chr6.1:4885616-4885635 | None:intergenic | 35.0% | |
| AGTAAAGTATGAACCCTTGT+GGG | - | chr6.1:4885987-4886006 | MS.gene074512:CDS | 35.0% | |
| ATAGGTTTAGGAGAAGAAAG+GGG | - | chr6.1:4886313-4886332 | MS.gene074512:intron | 35.0% | |
| ATTCTGATATCCTTGAAGCA+AGG | + | chr6.1:4885294-4885313 | None:intergenic | 35.0% | |
| CTTACATGGATAACCAAAAC+AGG | + | chr6.1:4885519-4885538 | None:intergenic | 35.0% | |
| GAGTACTATACCCTGTAAAA+CGG | - | chr6.1:4885356-4885375 | MS.gene074512:CDS | 35.0% | |
| GATAGGTTTAGGAGAAGAAA+GGG | - | chr6.1:4886312-4886331 | MS.gene074512:intron | 35.0% | |
| TAGCGTGTTTGGAAATTCAT+TGG | - | chr6.1:4885663-4885682 | MS.gene074512:intron | 35.0% | |
| TCAAGGATATCAGAATTGAG+AGG | - | chr6.1:4885298-4885317 | MS.gene074512:CDS | 35.0% | |
| TGATAGGTTTAGGAGAAGAA+AGG | - | chr6.1:4886311-4886330 | MS.gene074512:intron | 35.0% | |
| TTACTTTCACCCTCAAAACA+TGG | + | chr6.1:4885760-4885779 | None:intergenic | 35.0% | |
| TTAGGTGTTTAATGAACTCC+GGG | + | chr6.1:4886047-4886066 | None:intergenic | 35.0% | |
| TTGTAATCTTGAGCTTTACC+CGG | - | chr6.1:4886026-4886045 | MS.gene074512:CDS | 35.0% | |
| ! | AACCAATATGTCCGTTTTAC+AGG | + | chr6.1:4885370-4885389 | None:intergenic | 35.0% |
| ! | ACCAATATGTCCGTTTTACA+GGG | + | chr6.1:4885369-4885388 | None:intergenic | 35.0% |
| ! | TGGCTGTTTCAACAGAAAAA+AGG | + | chr6.1:4885149-4885168 | None:intergenic | 35.0% |
| ! | TGGTCAAGCATATACTTTTG+AGG | - | chr6.1:4885689-4885708 | MS.gene074512:intron | 35.0% |
| ! | TGGTGCATCAATTTTCTTCT+AGG | - | chr6.1:4885623-4885642 | MS.gene074512:intron | 35.0% |
| !! | CTCCTAAATCCATGTTTTGA+GGG | - | chr6.1:4885748-4885767 | MS.gene074512:intron | 35.0% |
| !! | TACTGCAAATGGTTCTGAAA+AGG | - | chr6.1:4886104-4886123 | MS.gene074512:CDS | 35.0% |
| AATGCCTGAAGGAACAATAC+GGG | - | chr6.1:4885209-4885228 | MS.gene074512:CDS | 40.0% | |
| ACATTACATATTTGGGGGAG+GGG | + | chr6.1:4885563-4885582 | None:intergenic | 40.0% | |
| ACCCTGTAAAACGGACATAT+TGG | - | chr6.1:4885365-4885384 | MS.gene074512:CDS | 40.0% | |
| ACGGCTATCTAAACTGTTTC+TGG | + | chr6.1:4886232-4886251 | None:intergenic | 40.0% | |
| ACTCTCAACCCTGACAAAAT+TGG | + | chr6.1:4885340-4885359 | None:intergenic | 40.0% | |
| AGCTGCATATAAATGCCTGA+AGG | - | chr6.1:4885198-4885217 | MS.gene074512:CDS | 40.0% | |
| CACCCTCAAAACATGGATTT+AGG | + | chr6.1:4885753-4885772 | None:intergenic | 40.0% | |
| CCTAAACCAACTACTGCAAA+TGG | - | chr6.1:4886093-4886112 | MS.gene074512:CDS | 40.0% | |
| CCTCAAAACATGGATTTAGG+AGG | + | chr6.1:4885750-4885769 | None:intergenic | 40.0% | |
| GAACATTACATATTTGGGGG+AGG | + | chr6.1:4885565-4885584 | None:intergenic | 40.0% | |
| GAAGTTGTAGATGTTTCGCA+TGG | - | chr6.1:4885940-4885959 | MS.gene074512:CDS | 40.0% | |
| TCAGAACCATTTGCAGTAGT+TGG | + | chr6.1:4886102-4886121 | None:intergenic | 40.0% | |
| TTCGCATGGAAAACAGCTAT+GGG | - | chr6.1:4885954-4885973 | MS.gene074512:CDS | 40.0% | |
| TTTCGCATGGAAAACAGCTA+TGG | - | chr6.1:4885953-4885972 | MS.gene074512:CDS | 40.0% | |
| ! | ATCTTTGCTGCCTTTGTTGT+TGG | - | chr6.1:4885603-4885622 | MS.gene074512:intron | 40.0% |
| ! | CAGATCGTGTTGATAGGTTT+AGG | - | chr6.1:4886301-4886320 | MS.gene074512:intron | 40.0% |
| ! | CATGGTCAAATGTCCTGTTT+TGG | - | chr6.1:4885503-4885522 | MS.gene074512:intron | 40.0% |
| ! | CCATTTGCAGTAGTTGGTTT+AGG | + | chr6.1:4886096-4886115 | None:intergenic | 40.0% |
| ! | CCTCCTAAATCCATGTTTTG+AGG | - | chr6.1:4885747-4885766 | MS.gene074512:intron | 40.0% |
| ! | TGCACAGTCCAATTTTGTCA+GGG | - | chr6.1:4885329-4885348 | MS.gene074512:CDS | 40.0% |
| ! | TTGCACAGTCCAATTTTGTC+AGG | - | chr6.1:4885328-4885347 | MS.gene074512:CDS | 40.0% |
| !! | AAACTGTTTCTGGAAGCTTC+AGG | + | chr6.1:4886222-4886241 | None:intergenic | 40.0% |
| !! | TCAGAAGTACTAGAAGTTCC+AGG | + | chr6.1:4886183-4886202 | None:intergenic | 40.0% |
| ATGCCTGAAGGAACAATACG+GGG | - | chr6.1:4885210-4885229 | MS.gene074512:CDS | 45.0% | |
| CATGGATTTAGGAGGAGACT+AGG | + | chr6.1:4885742-4885761 | None:intergenic | 45.0% | |
| CATTACATATTTGGGGGAGG+GGG | + | chr6.1:4885562-4885581 | None:intergenic | 45.0% | |
| CTTGAAGCAAGGTCAAGTGT+GGG | + | chr6.1:4885283-4885302 | None:intergenic | 45.0% | |
| GCAAGCAAAGAATCAGAACC+TGG | - | chr6.1:4886162-4886181 | MS.gene074512:intron | 45.0% | |
| GTGCGTGTTTGGAAAACCAT+TGG | + | chr6.1:4885720-4885739 | None:intergenic | 45.0% | |
| GTGCTCATTCGAGATTTCTC+TGG | + | chr6.1:4886282-4886301 | None:intergenic | 45.0% | |
| TATGAACCCTTGTGGGTAAG+TGG | - | chr6.1:4885994-4886013 | MS.gene074512:CDS | 45.0% | |
| TATGGTCAATCTGTTGGCAG+CGG | - | chr6.1:4885256-4885275 | MS.gene074512:CDS | 45.0% | |
| ! | CGAGATTTCTCTGGTTTGTC+CGG | + | chr6.1:4886273-4886292 | None:intergenic | 45.0% |
| ! | TGAGCACAGATCGTGTTGAT+AGG | - | chr6.1:4886295-4886314 | MS.gene074512:intron | 45.0% |
| !! | GGAGAAGAAAGGGGTTAGTT+TGG | - | chr6.1:4886322-4886341 | MS.gene074512:intron | 45.0% |
| !! | AAAAAAAATAGTTTATTTAA+TGG | + | chr6.1:4885028-4885047 | None:intergenic | 5.0% |
| CATCTGCTGTACCCTGACAT+TGG | + | chr6.1:4885921-4885940 | None:intergenic | 50.0% | |
| CCACACTTGACCTTGCTTCA+AGG | - | chr6.1:4885281-4885300 | MS.gene074512:CDS | 50.0% | |
| CCTTGAAGCAAGGTCAAGTG+TGG | + | chr6.1:4885284-4885303 | None:intergenic | 50.0% | |
| GGAGAGAGGAGTCACTTACA+TGG | + | chr6.1:4885533-4885552 | None:intergenic | 50.0% | |
| TCACCCCGTATTGTTCCTTC+AGG | + | chr6.1:4885216-4885235 | None:intergenic | 50.0% | |
| CCACCACCACTTACCCACAA+GGG | + | chr6.1:4886003-4886022 | None:intergenic | 55.0% | |
| GAACCCTTGTGGGTAAGTGG+TGG | - | chr6.1:4885997-4886016 | MS.gene074512:CDS | 55.0% | |
| GAGGAGACTAGGTGCGTGTT+TGG | + | chr6.1:4885731-4885750 | None:intergenic | 55.0% | |
| TCCACCACCACTTACCCACA+AGG | + | chr6.1:4886004-4886023 | None:intergenic | 55.0% | |
| ATTTGGGGGAGGGGGAGAGA+GGG | + | chr6.1:4885554-4885573 | None:intergenic | 60.0% | |
| CCCTTGTGGGTAAGTGGTGG+TGG | - | chr6.1:4886000-4886019 | MS.gene074512:CDS | 60.0% | |
| TATTTGGGGGAGGGGGAGAG+AGG | + | chr6.1:4885555-4885574 | None:intergenic | 60.0% | |
| GGAGGGGGAGAGAGGGAGAG+AGG | + | chr6.1:4885547-4885566 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 4884991 | 4886347 | 4884991 | ID=MS.gene074512 |
| chr6.1 | mRNA | 4884991 | 4886347 | 4884991 | ID=MS.gene074512.t1;Parent=MS.gene074512 |
| chr6.1 | exon | 4886345 | 4886347 | 4886345 | ID=MS.gene074512.t1.exon1;Parent=MS.gene074512.t1 |
| chr6.1 | CDS | 4886345 | 4886347 | 4886345 | ID=cds.MS.gene074512.t1;Parent=MS.gene074512.t1 |
| chr6.1 | exon | 4885936 | 4886172 | 4885936 | ID=MS.gene074512.t1.exon2;Parent=MS.gene074512.t1 |
| chr6.1 | CDS | 4885936 | 4886172 | 4885936 | ID=cds.MS.gene074512.t1;Parent=MS.gene074512.t1 |
| chr6.1 | exon | 4885805 | 4885852 | 4885805 | ID=MS.gene074512.t1.exon3;Parent=MS.gene074512.t1 |
| chr6.1 | CDS | 4885805 | 4885852 | 4885805 | ID=cds.MS.gene074512.t1;Parent=MS.gene074512.t1 |
| chr6.1 | exon | 4884991 | 4885410 | 4884991 | ID=MS.gene074512.t1.exon4;Parent=MS.gene074512.t1 |
| chr6.1 | CDS | 4884991 | 4885410 | 4884991 | ID=cds.MS.gene074512.t1;Parent=MS.gene074512.t1 |
| Gene Sequence |
| Protein sequence |
