Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33543.t1 | XP_024637279.1 | 97.6 | 293 | 7 | 0 | 1 | 293 | 1 | 293 | 4.10E-168 | 600.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33543.t1 | Q7ZVZ7 | 46.7 | 261 | 126 | 6 | 8 | 257 | 29 | 287 | 3.8e-61 | 236.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33543.t1 | A0A396IJ93 | 97.6 | 293 | 7 | 0 | 1 | 293 | 1 | 293 | 3.0e-168 | 600.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene074512 | MS.gene33543 | PPI |
| MS.gene012602 | MS.gene33543 | PPI |
| MS.gene042261 | MS.gene33543 | PPI |
| MS.gene80896 | MS.gene33543 | PPI |
| MS.gene074198 | MS.gene33543 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33543.t1 | MTR_7g032640 | 65.019 | 263 | 91 | 1 | 1 | 262 | 1 | 263 | 2.72e-126 | 365 |
| MS.gene33543.t1 | MTR_3g075410 | 63.498 | 263 | 95 | 1 | 1 | 262 | 1 | 263 | 3.68e-125 | 362 |
| MS.gene33543.t1 | MTR_7g017430 | 65.660 | 265 | 90 | 1 | 1 | 264 | 1 | 265 | 6.35e-125 | 362 |
| MS.gene33543.t1 | MTR_8g037335 | 60.884 | 294 | 104 | 4 | 1 | 287 | 1 | 290 | 7.11e-124 | 357 |
| MS.gene33543.t1 | MTR_5g029210 | 62.544 | 283 | 97 | 3 | 1 | 276 | 1 | 281 | 1.19e-122 | 357 |
| MS.gene33543.t1 | MTR_6g018930 | 60.357 | 280 | 98 | 2 | 1 | 267 | 1 | 280 | 4.15e-121 | 351 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33543.t1 | AT4G31020 | 77.211 | 294 | 66 | 1 | 1 | 293 | 1 | 294 | 3.34e-174 | 483 |
| MS.gene33543.t1 | AT4G31020 | 77.211 | 294 | 66 | 1 | 1 | 293 | 1 | 294 | 3.34e-174 | 483 |
| MS.gene33543.t1 | AT2G24320 | 74.150 | 294 | 74 | 2 | 1 | 293 | 1 | 293 | 2.78e-169 | 471 |
| MS.gene33543.t1 | AT2G24320 | 74.216 | 287 | 72 | 2 | 8 | 293 | 1 | 286 | 2.92e-165 | 460 |
| MS.gene33543.t1 | AT3G01690 | 63.736 | 273 | 98 | 1 | 1 | 272 | 1 | 273 | 2.22e-128 | 370 |
| MS.gene33543.t1 | AT5G14390 | 62.724 | 279 | 103 | 1 | 1 | 278 | 1 | 279 | 1.40e-127 | 368 |
| MS.gene33543.t1 | AT3G30380 | 61.324 | 287 | 106 | 3 | 1 | 284 | 1 | 285 | 2.02e-124 | 360 |
| MS.gene33543.t1 | AT3G30380 | 61.324 | 287 | 106 | 3 | 1 | 284 | 1 | 285 | 4.92e-124 | 360 |
| MS.gene33543.t1 | AT5G38220 | 61.837 | 283 | 106 | 2 | 1 | 283 | 1 | 281 | 1.06e-122 | 354 |
| MS.gene33543.t1 | AT5G38220 | 61.837 | 283 | 106 | 2 | 1 | 283 | 1 | 281 | 1.06e-122 | 354 |
| MS.gene33543.t1 | AT1G66900 | 60.284 | 282 | 98 | 3 | 1 | 278 | 1 | 272 | 2.14e-120 | 346 |
| MS.gene33543.t1 | AT4G24760 | 60.837 | 263 | 102 | 1 | 1 | 262 | 1 | 263 | 1.09e-119 | 348 |
| MS.gene33543.t1 | AT1G32190 | 59.353 | 278 | 103 | 1 | 1 | 268 | 1 | 278 | 9.74e-118 | 345 |
| MS.gene33543.t1 | AT1G13610 | 57.778 | 270 | 108 | 2 | 1 | 265 | 1 | 269 | 4.23e-109 | 320 |
| MS.gene33543.t1 | AT5G38220 | 63.285 | 207 | 75 | 1 | 1 | 207 | 1 | 206 | 2.28e-86 | 258 |
| MS.gene33543.t1 | AT1G32190 | 64.744 | 156 | 55 | 0 | 113 | 268 | 38 | 193 | 1.20e-70 | 222 |
| MS.gene33543.t1 | AT1G13610 | 65.132 | 152 | 53 | 0 | 114 | 265 | 18 | 169 | 8.04e-68 | 212 |
Find 73 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGCTATTCTTTCAGGATTA+AGG | 0.129442 | 8.2:+3634805 | MS.gene33543:CDS |
| CTTCACAGTGCTATTCTTTC+AGG | 0.153165 | 8.2:+3634798 | MS.gene33543:CDS |
| TCATGGTAATGCTGCTGATT+TGG | 0.244610 | 8.2:+3634058 | MS.gene33543:CDS |
| AACCAAAATGTGACCTTTAC+AGG | 0.254772 | 8.2:-3634837 | None:intergenic |
| AATTTATTGAGGAATGAATA+TGG | 0.259059 | 8.2:+3634678 | MS.gene33543:CDS |
| TATGACCCCTTGTGGGTTAA+AGG | 0.264120 | 8.2:+3636893 | MS.gene33543:CDS |
| GATGGGGTGTTGAAGATTTC+CGG | 0.280498 | 8.2:+3633927 | MS.gene33543:CDS |
| CTTAGGATTTGTTAAAAGAT+AGG | 0.296850 | 8.2:+3637066 | MS.gene33543:CDS |
| CATGGTAATGCTGCTGATTT+GGG | 0.302622 | 8.2:+3634059 | MS.gene33543:CDS |
| TCCTAAGCATTTGGTATGTC+TGG | 0.309595 | 8.2:-3637050 | None:intergenic |
| TGCTATTCTTTCAGGATTAA+GGG | 0.314061 | 8.2:+3634806 | MS.gene33543:CDS |
| AGCTATGATTATTCTGGATA+TGG | 0.314458 | 8.2:+3634465 | MS.gene33543:intron |
| ACCCTGTAAAGGTCACATTT+TGG | 0.331867 | 8.2:+3634835 | MS.gene33543:CDS |
| TTCAGAACATAGACAAAATT+CGG | 0.348913 | 8.2:+3634955 | MS.gene33543:intron |
| TTTAACAAATCCTAAGCATT+TGG | 0.350665 | 8.2:-3637059 | None:intergenic |
| GAGTGAGTTGTTTGTTTGCT+TGG | 0.379199 | 8.2:-3637006 | None:intergenic |
| AATATAGTAAACCTTGCAAA+AGG | 0.412344 | 8.2:-3634029 | None:intergenic |
| GTTCTCATGGAAAGCGGTTG+TGG | 0.413811 | 8.2:+3636852 | MS.gene33543:CDS |
| GAAATTGTTGATTGTTCTCA+TGG | 0.418735 | 8.2:+3636839 | MS.gene33543:CDS |
| AGACACAAAAGGAGGCAATA+AGG | 0.435883 | 8.2:+3633983 | MS.gene33543:CDS |
| CGCAAATACTTGATGTACTC+GGG | 0.439325 | 8.2:-3636944 | None:intergenic |
| ACTTCGTATGTTGGTGGCTC+CGG | 0.442509 | 8.2:-3633888 | None:intergenic |
| TTCTCATGGAAAGCGGTTGT+GGG | 0.445570 | 8.2:+3636853 | MS.gene33543:CDS |
| TCTTTGTAAACTTCGTATGT+TGG | 0.468696 | 8.2:-3633897 | None:intergenic |
| TTGTAAACTTCGTATGTTGG+TGG | 0.474036 | 8.2:-3633894 | None:intergenic |
| TAATGTCACGGGAACGGTGG+CGG | 0.478677 | 8.2:+3633845 | MS.gene33543:CDS |
| TTTGTTTGCTTGGCTAGTGA+TGG | 0.479942 | 8.2:-3636996 | None:intergenic |
| TATGGTCAATCGGTTGGAAG+TGG | 0.482533 | 8.2:+3634726 | MS.gene33543:CDS |
| TGTACTCGGGGAAAGTTTCA+AGG | 0.485576 | 8.2:-3636931 | None:intergenic |
| GTTTACAAAGATAACGATGA+TGG | 0.495815 | 8.2:+3633909 | MS.gene33543:CDS |
| TCGTATGTTGGTGGCTCCGG+CGG | 0.498129 | 8.2:-3633885 | None:intergenic |
| AGGCTGTATATAATTTATTG+AGG | 0.499243 | 8.2:+3634667 | MS.gene33543:CDS |
| TCCAGACATACCAAATGCTT+AGG | 0.502115 | 8.2:+3637049 | MS.gene33543:CDS |
| TCTGGATATGGACGTTCCAC+AGG | 0.507640 | 8.2:+3634477 | MS.gene33543:CDS |
| GCGCAAATACTTGATGTACT+CGG | 0.516953 | 8.2:-3636945 | None:intergenic |
| TTTACAAAGATAACGATGAT+GGG | 0.521409 | 8.2:+3633910 | MS.gene33543:CDS |
| AAGTGGACCGACGCTGCACT+TGG | 0.521604 | 8.2:+3634743 | MS.gene33543:CDS |
| CCCTTGTGGGTTAAAGGTGG+AGG | 0.522765 | 8.2:+3636899 | MS.gene33543:CDS |
| GTTCATATTGTAGACACAAA+AGG | 0.523072 | 8.2:+3633972 | MS.gene33543:CDS |
| CTGTAAATGGGTAATGTCAC+GGG | 0.526702 | 8.2:+3633834 | None:intergenic |
| TTTACTATATTGTACTCTCA+TGG | 0.531187 | 8.2:+3634041 | MS.gene33543:CDS |
| TGTCTGGAATCAGTAATACT+AGG | 0.534886 | 8.2:-3637034 | None:intergenic |
| TAATATGTGTTGAACTCAGA+TGG | 0.543757 | 8.2:-3634636 | None:intergenic |
| AAGGGTCTTGTACCCTGTAA+AGG | 0.543937 | 8.2:+3634824 | MS.gene33543:CDS |
| ATAAGGTTGTTGCTACGTTG+TGG | 0.553608 | 8.2:+3634000 | MS.gene33543:CDS |
| CGTATGTTGGTGGCTCCGGC+GGG | 0.555441 | 8.2:-3633884 | None:intergenic |
| ATATAGTAAACCTTGCAAAA+GGG | 0.557024 | 8.2:-3634028 | None:intergenic |
| ATATGGACGTTCCACAGGTA+AGG | 0.559847 | 8.2:+3634482 | MS.gene33543:CDS |
| TCTGTAAATGGGTAATGTCA+CGG | 0.560811 | 8.2:+3633833 | None:intergenic |
| TCTAAATTGCAAAAGTTGAG+AGG | 0.565951 | 8.2:+3634768 | MS.gene33543:CDS |
| ACCAAAATGTGACCTTTACA+GGG | 0.571897 | 8.2:-3634836 | None:intergenic |
| GGAAAGTTTCAAGGTTGCAA+TGG | 0.579596 | 8.2:-3636922 | None:intergenic |
| GCCTCCACCTTTAACCCACA+AGG | 0.587124 | 8.2:-3636900 | None:intergenic |
| AATTCGGTATGTCAACTGTC+CGG | 0.588609 | 8.2:+3634971 | MS.gene33543:CDS |
| ATCTTCGTGTTAATATCATG+AGG | 0.591275 | 8.2:+3634117 | MS.gene33543:CDS |
| AATGGGTAATGTCACGGGAA+CGG | 0.599267 | 8.2:+3633839 | None:intergenic |
| GAGCTCTAAGCTCAATGAAG+AGG | 0.600995 | 8.2:-3634094 | None:intergenic |
| GCGGTTGTGGGAGCTCTCAA+AGG | 0.609084 | 8.2:+3636865 | MS.gene33543:CDS |
| GGGTAATGTCACGGGAACGG+TGG | 0.610257 | 8.2:+3633842 | MS.gene33543:CDS |
| TGAGTTACTTACCTTACCTG+TGG | 0.616944 | 8.2:-3634493 | None:intergenic |
| GGATTGTTTACAGGGAACAG+AGG | 0.618205 | 8.2:+3636814 | MS.gene33543:intron |
| TTAGAAGCCAAGTGCAGCGT+CGG | 0.618493 | 8.2:-3634750 | None:intergenic |
| CAACACATATTACGACATAG+AGG | 0.618835 | 8.2:+3634647 | MS.gene33543:CDS |
| GACCCCTTGTGGGTTAAAGG+TGG | 0.621379 | 8.2:+3636896 | MS.gene33543:CDS |
| GCGCAAGTTTATCAACACAA+TGG | 0.634079 | 8.2:+3636964 | MS.gene33543:CDS |
| GTTGAAGATTTCCGGCACGA+CGG | 0.635860 | 8.2:+3633935 | MS.gene33543:CDS |
| CTTACATGTATAACAAACAC+CGG | 0.637648 | 8.2:-3634990 | None:intergenic |
| TTGATTGTTCTCATGGAAAG+CGG | 0.658164 | 8.2:+3636846 | MS.gene33543:CDS |
| CTCCACCTTTAACCCACAAG+GGG | 0.660635 | 8.2:-3636898 | None:intergenic |
| CCTCCACCTTTAACCCACAA+GGG | 0.665071 | 8.2:-3636899 | None:intergenic |
| TTACAAAGATAACGATGATG+GGG | 0.668143 | 8.2:+3633911 | MS.gene33543:CDS |
| CATATTGTAGACACAAAAGG+AGG | 0.669657 | 8.2:+3633975 | MS.gene33543:CDS |
| GCAAATACTTGATGTACTCG+GGG | 0.680722 | 8.2:-3636943 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAATTATTTTCTAATTGA+GGG | - | chr8.2:3635184-3635203 | None:intergenic | 10.0% |
| !! | ACAATACAATAATGAAATTT+AGG | + | chr8.2:3636015-3636034 | MS.gene33543:intron | 15.0% |
| !! | TATATTATATAAATCTATGC+TGG | - | chr8.2:3636366-3636385 | None:intergenic | 15.0% |
| !!! | AAATAATTTTACAATAGAAG+AGG | + | chr8.2:3635193-3635212 | MS.gene33543:intron | 15.0% |
| !!! | GTAAAATTATTTTCTAATTG+AGG | - | chr8.2:3635185-3635204 | None:intergenic | 15.0% |
| !!! | TTTATATAATATATGCCTTT+TGG | + | chr8.2:3636373-3636392 | MS.gene33543:intron | 15.0% |
| !!! | TTTCTATACTTTGTTATAAA+AGG | - | chr8.2:3635885-3635904 | None:intergenic | 15.0% |
| !! | AATTTATTGAGGAATGAATA+TGG | + | chr8.2:3634678-3634697 | MS.gene33543:CDS | 20.0% |
| !! | CATATGCAAAATTGTATATA+AGG | - | chr8.2:3634157-3634176 | None:intergenic | 20.0% |
| !! | TACCTATTAACATAATCTTA+AGG | - | chr8.2:3635964-3635983 | None:intergenic | 20.0% |
| !! | TACCTTAAGATTATGTTAAT+AGG | + | chr8.2:3635959-3635978 | MS.gene33543:intron | 20.0% |
| !! | TCATTATTGTATTGTTCTAA+AGG | - | chr8.2:3636010-3636029 | None:intergenic | 20.0% |
| !! | TTAAGATTATGTTAATAGGT+AGG | + | chr8.2:3635963-3635982 | MS.gene33543:intron | 20.0% |
| !!! | AAAAGTATATAGTACCTTTT+TGG | + | chr8.2:3635641-3635660 | MS.gene33543:intron | 20.0% |
| !!! | ATGTTTTATTTCGATTGTTT+AGG | + | chr8.2:3635817-3635836 | MS.gene33543:intron | 20.0% |
| !!! | TGTTTTATTTCGATTGTTTA+GGG | + | chr8.2:3635818-3635837 | MS.gene33543:intron | 20.0% |
| ! | AAATAAAACATTTCAGTGGA+TGG | - | chr8.2:3635808-3635827 | None:intergenic | 25.0% |
| ! | AATATAGTAAACCTTGCAAA+AGG | - | chr8.2:3634032-3634051 | None:intergenic | 25.0% |
| ! | ACCAATACTATTGATAGAAT+GGG | + | chr8.2:3636429-3636448 | MS.gene33543:intron | 25.0% |
| ! | AGAAGATAGGAAAAAAAAGA+AGG | - | chr8.2:3635607-3635626 | None:intergenic | 25.0% |
| ! | AGATCTTTCTAAGTATTTCT+TGG | + | chr8.2:3634424-3634443 | MS.gene33543:intron | 25.0% |
| ! | AGGCTGTATATAATTTATTG+AGG | + | chr8.2:3634667-3634686 | MS.gene33543:CDS | 25.0% |
| ! | ATATAGTAAACCTTGCAAAA+GGG | - | chr8.2:3634031-3634050 | None:intergenic | 25.0% |
| ! | ATCGAAATAAAACATTTCAG+TGG | - | chr8.2:3635812-3635831 | None:intergenic | 25.0% |
| ! | CATCTGATATGATAGATTTA+GGG | - | chr8.2:3635714-3635733 | None:intergenic | 25.0% |
| ! | GAATAAAGAAACAATAACCA+TGG | - | chr8.2:3634241-3634260 | None:intergenic | 25.0% |
| ! | GATCAAATATAACCAGAAAA+GGG | - | chr8.2:3635065-3635084 | None:intergenic | 25.0% |
| ! | TACCAATACTATTGATAGAA+TGG | + | chr8.2:3636428-3636447 | MS.gene33543:intron | 25.0% |
| ! | TCAATTTCAGTATTTCTTCT+AGG | - | chr8.2:3636512-3636531 | None:intergenic | 25.0% |
| ! | TCATCTGATATGATAGATTT+AGG | - | chr8.2:3635715-3635734 | None:intergenic | 25.0% |
| ! | TGATCAAATATAACCAGAAA+AGG | - | chr8.2:3635066-3635085 | None:intergenic | 25.0% |
| ! | TTCAGAACATAGACAAAATT+CGG | + | chr8.2:3634955-3634974 | MS.gene33543:intron | 25.0% |
| ! | TTCTATCTATGTATGTAATC+AGG | + | chr8.2:3635024-3635043 | MS.gene33543:intron | 25.0% |
| ! | TTGCTTAGTCTCATTATTTA+CGG | + | chr8.2:3636721-3636740 | MS.gene33543:intron | 25.0% |
| ! | TTTAACAAATCCTAAGCATT+TGG | - | chr8.2:3637062-3637081 | None:intergenic | 25.0% |
| ! | TTTACAAAGATAACGATGAT+GGG | + | chr8.2:3633910-3633929 | MS.gene33543:CDS | 25.0% |
| ! | TTTACTATATTGTACTCTCA+TGG | + | chr8.2:3634041-3634060 | MS.gene33543:CDS | 25.0% |
| !! | ATTATATTTTTCTCCCTGTT+TGG | + | chr8.2:3635932-3635951 | MS.gene33543:intron | 25.0% |
| !! | CAATAATGAAATTTAGGTTC+TGG | + | chr8.2:3636021-3636040 | MS.gene33543:intron | 25.0% |
| !! | TAAACACCAAAAATGTTTTG+CGG | - | chr8.2:3636458-3636477 | None:intergenic | 25.0% |
| !! | TATTAGACTTTGTAGCTTTA+TGG | + | chr8.2:3634367-3634386 | MS.gene33543:intron | 25.0% |
| !! | TGATCAATAGTTTCTTTTTG+AGG | + | chr8.2:3635080-3635099 | MS.gene33543:intron | 25.0% |
| !!! | AAGAAGGTATGTTTCTTTTA+TGG | - | chr8.2:3635591-3635610 | None:intergenic | 25.0% |
| !!! | AATAGTTTTGTTTCTGCTTA+TGG | + | chr8.2:3636793-3636812 | MS.gene33543:intron | 25.0% |
| !!! | AATTTGTTGTGCATATTTAG+TGG | + | chr8.2:3636301-3636320 | MS.gene33543:intron | 25.0% |
| !!! | AGGTACTATATACTTTTTCT+AGG | - | chr8.2:3635638-3635657 | None:intergenic | 25.0% |
| !!! | CAAGAAGATTTGATTTTGTA+TGG | + | chr8.2:3634708-3634727 | MS.gene33543:CDS | 25.0% |
| !!! | GGTACTATATACTTTTTCTA+GGG | - | chr8.2:3635637-3635656 | None:intergenic | 25.0% |
| !!! | TATCAATAGTATTGGTAGAA+CGG | - | chr8.2:3636425-3636444 | None:intergenic | 25.0% |
| !!! | TTTGATTTTGTATGGTCAAT+CGG | + | chr8.2:3634716-3634735 | MS.gene33543:CDS | 25.0% |
| !!! | TTTTTTTTTTGAATTGGCCA+TGG | + | chr8.2:3634221-3634240 | MS.gene33543:intron | 25.0% |
| AAAAACACCAAGATTGAACT+TGG | - | chr8.2:3634314-3634333 | None:intergenic | 30.0% | |
| AAACTCCGTGCTAAAAATTA+TGG | - | chr8.2:3634908-3634927 | None:intergenic | 30.0% | |
| AAATCATCATCAAGCTAAAC+AGG | - | chr8.2:3635137-3635156 | None:intergenic | 30.0% | |
| ACCCATTCTATCAATAGTAT+TGG | - | chr8.2:3636433-3636452 | None:intergenic | 30.0% | |
| AGCTATGATTATTCTGGATA+TGG | + | chr8.2:3634465-3634484 | MS.gene33543:intron | 30.0% | |
| AGTCTCATTATTTACGGATT+CGG | + | chr8.2:3636727-3636746 | MS.gene33543:intron | 30.0% | |
| ATCTTCGTGTTAATATCATG+AGG | + | chr8.2:3634117-3634136 | MS.gene33543:CDS | 30.0% | |
| CTTAAGGTATATACCAAACA+GGG | - | chr8.2:3635948-3635967 | None:intergenic | 30.0% | |
| CTTACATGTATAACAAACAC+CGG | - | chr8.2:3634993-3635012 | None:intergenic | 30.0% | |
| GATAGATAAATGCTACCAAA+AGG | - | chr8.2:3636391-3636410 | None:intergenic | 30.0% | |
| GTTCATATTGTAGACACAAA+AGG | + | chr8.2:3633972-3633991 | MS.gene33543:CDS | 30.0% | |
| GTTGTAGTCATTGTTGTAAA+TGG | + | chr8.2:3636644-3636663 | MS.gene33543:intron | 30.0% | |
| GTTTACAAAGATAACGATGA+TGG | + | chr8.2:3633909-3633928 | MS.gene33543:CDS | 30.0% | |
| TAAAAGCCTCAGTTTGAATA+AGG | + | chr8.2:3635460-3635479 | MS.gene33543:intron | 30.0% | |
| TAATATGTGTTGAACTCAGA+TGG | - | chr8.2:3634639-3634658 | None:intergenic | 30.0% | |
| TATGAAACTCCAACTGAAAA+GGG | + | chr8.2:3636119-3636138 | MS.gene33543:intron | 30.0% | |
| TCTAAATTGCAAAAGTTGAG+AGG | + | chr8.2:3634768-3634787 | MS.gene33543:CDS | 30.0% | |
| TCTTAAGGTATATACCAAAC+AGG | - | chr8.2:3635949-3635968 | None:intergenic | 30.0% | |
| TCTTTGTAAACTTCGTATGT+TGG | - | chr8.2:3633900-3633919 | None:intergenic | 30.0% | |
| TGCTATTCTTTCAGGATTAA+GGG | + | chr8.2:3634806-3634825 | MS.gene33543:CDS | 30.0% | |
| TTACAAAGATAACGATGATG+GGG | + | chr8.2:3633911-3633930 | MS.gene33543:CDS | 30.0% | |
| TTAGGTTAACATGCATGAAA+AGG | - | chr8.2:3636225-3636244 | None:intergenic | 30.0% | |
| TTTCATGCATGTTAACCTAA+AGG | + | chr8.2:3636225-3636244 | MS.gene33543:intron | 30.0% | |
| ! | AGGTATGTTTCTTTTATGGA+TGG | - | chr8.2:3635587-3635606 | None:intergenic | 30.0% |
| ! | CTTTTATATGTGAGTACACA+GGG | - | chr8.2:3635446-3635465 | None:intergenic | 30.0% |
| ! | GAAATTGTTGATTGTTCTCA+TGG | + | chr8.2:3636839-3636858 | MS.gene33543:CDS | 30.0% |
| ! | TTTTATATGTGAGTACACAG+GGG | - | chr8.2:3635445-3635464 | None:intergenic | 30.0% |
| ! | TTTTGCAGCTATGATTATTC+TGG | + | chr8.2:3634459-3634478 | MS.gene33543:intron | 30.0% |
| !! | AGAAAGCATCACAATTGATA+TGG | + | chr8.2:3636756-3636775 | MS.gene33543:intron | 30.0% |
| !! | ATCAATAGTATTGGTAGAAC+GGG | - | chr8.2:3636424-3636443 | None:intergenic | 30.0% |
| AACCAAAATGTGACCTTTAC+AGG | - | chr8.2:3634840-3634859 | None:intergenic | 35.0% | |
| AATAAGGTCCAAAGAATCGA+TGG | + | chr8.2:3635476-3635495 | MS.gene33543:intron | 35.0% | |
| AATACCAGATGGGAAAACAA+TGG | - | chr8.2:3635342-3635361 | None:intergenic | 35.0% | |
| ACCAAAATGTGACCTTTACA+GGG | - | chr8.2:3634839-3634858 | None:intergenic | 35.0% | |
| AGAATAACTAGTACCCCTAA+TGG | + | chr8.2:3636088-3636107 | MS.gene33543:intron | 35.0% | |
| ATACCAGATGGGAAAACAAT+GGG | - | chr8.2:3635341-3635360 | None:intergenic | 35.0% | |
| ATCAGGATTTGAATACCAGA+TGG | - | chr8.2:3635353-3635372 | None:intergenic | 35.0% | |
| ATGAAACTCCAACTGAAAAG+GGG | + | chr8.2:3636120-3636139 | MS.gene33543:intron | 35.0% | |
| ATGAGTGCAGTTCAATCTTA+TGG | + | chr8.2:3636148-3636167 | MS.gene33543:intron | 35.0% | |
| CAACACATATTACGACATAG+AGG | + | chr8.2:3634647-3634666 | MS.gene33543:CDS | 35.0% | |
| CATATTGTAGACACAAAAGG+AGG | + | chr8.2:3633975-3633994 | MS.gene33543:CDS | 35.0% | |
| CTATGAAACTCCAACTGAAA+AGG | + | chr8.2:3636118-3636137 | MS.gene33543:intron | 35.0% | |
| CTGGTATTCAAATCCTGATT+CGG | + | chr8.2:3635354-3635373 | MS.gene33543:intron | 35.0% | |
| GAAGACAGAGGAATTTAATG+AGG | - | chr8.2:3635548-3635567 | None:intergenic | 35.0% | |
| GTATTCGTTTGTAGTGAGTA+GGG | + | chr8.2:3636172-3636191 | MS.gene33543:intron | 35.0% | |
| GTCTCATTATTTACGGATTC+GGG | + | chr8.2:3636728-3636747 | MS.gene33543:intron | 35.0% | |
| GTTGCCTAGTTTATGAGATA+TGG | + | chr8.2:3636603-3636622 | MS.gene33543:intron | 35.0% | |
| TCAGGATTTGAATACCAGAT+GGG | - | chr8.2:3635352-3635371 | None:intergenic | 35.0% | |
| TGTATTCGTTTGTAGTGAGT+AGG | + | chr8.2:3636171-3636190 | MS.gene33543:intron | 35.0% | |
| TGTTGTGCATATTTAGTGGA+TGG | + | chr8.2:3636305-3636324 | MS.gene33543:intron | 35.0% | |
| TTCACTGATATATCCGAATC+AGG | - | chr8.2:3635370-3635389 | None:intergenic | 35.0% | |
| TTCACTTCCAAGTTCAATCT+TGG | + | chr8.2:3634304-3634323 | MS.gene33543:intron | 35.0% | |
| TTGATTGTTCTCATGGAAAG+CGG | + | chr8.2:3636846-3636865 | MS.gene33543:CDS | 35.0% | |
| TTGGCCATATCTCATAAACT+AGG | - | chr8.2:3636610-3636629 | None:intergenic | 35.0% | |
| TTGTAAACTTCGTATGTTGG+TGG | - | chr8.2:3633897-3633916 | None:intergenic | 35.0% | |
| TTTGGACCTTATTCAAACTG+AGG | - | chr8.2:3635469-3635488 | None:intergenic | 35.0% | |
| ! | ATTTTGTATGGTCAATCGGT+TGG | + | chr8.2:3634720-3634739 | MS.gene33543:CDS | 35.0% |
| ! | CAATTGAGTTTTCTTTCTGG+AGG | + | chr8.2:3635772-3635791 | MS.gene33543:intron | 35.0% |
| ! | CTGCTTATGGATTGTTTACA+GGG | + | chr8.2:3636806-3636825 | MS.gene33543:intron | 35.0% |
| ! | CTTTTCAGTTGGAGTTTCAT+AGG | - | chr8.2:3636120-3636139 | None:intergenic | 35.0% |
| ! | GAATTTAATGAGGAGAGCAT+GGG | - | chr8.2:3635538-3635557 | None:intergenic | 35.0% |
| ! | GCAGAGGTATAAGAATTGTA+AGG | - | chr8.2:3634886-3634905 | None:intergenic | 35.0% |
| ! | GCTCAATTGAGTTTTCTTTC+TGG | + | chr8.2:3635769-3635788 | MS.gene33543:intron | 35.0% |
| ! | GCTTTTATATGTGAGTACAC+AGG | - | chr8.2:3635447-3635466 | None:intergenic | 35.0% |
| ! | GTGCTATTCTTTCAGGATTA+AGG | + | chr8.2:3634805-3634824 | MS.gene33543:CDS | 35.0% |
| ! | TAGATTGCTGTTGTACCTTT+AGG | - | chr8.2:3636243-3636262 | None:intergenic | 35.0% |
| ! | TATTTAGTGGATGGTCATCA+TGG | + | chr8.2:3636314-3636333 | MS.gene33543:intron | 35.0% |
| ! | TCTGCTTATGGATTGTTTAC+AGG | + | chr8.2:3636805-3636824 | MS.gene33543:intron | 35.0% |
| ! | TGTAATTGTGTTCCCTTTTC+TGG | + | chr8.2:3635050-3635069 | MS.gene33543:intron | 35.0% |
| ! | TGTCTGGAATCAGTAATACT+AGG | - | chr8.2:3637037-3637056 | None:intergenic | 35.0% |
| !! | ACCTTTTTGGTGAGTGAAAA+TGG | + | chr8.2:3635654-3635673 | MS.gene33543:intron | 35.0% |
| !! | CCTTTTTGGTGAGTGAAAAT+GGG | + | chr8.2:3635655-3635674 | MS.gene33543:intron | 35.0% |
| !! | TCAATAGTATTGGTAGAACG+GGG | - | chr8.2:3636423-3636442 | None:intergenic | 35.0% |
| !! | TGTAAATGGAGCTGATTTTG+AGG | + | chr8.2:3636658-3636677 | MS.gene33543:intron | 35.0% |
| !! | TTCAGTATTTCTTCTAGGAC+TGG | - | chr8.2:3636507-3636526 | None:intergenic | 35.0% |
| !!! | CTCTGCCATAATTTTTAGCA+CGG | + | chr8.2:3634900-3634919 | MS.gene33543:intron | 35.0% |
| AATTACAGAAACACCGCATC+AGG | - | chr8.2:3635113-3635132 | None:intergenic | 40.0% | |
| AATTCCTCTGTCTTCCATGT+CGG | + | chr8.2:3635553-3635572 | MS.gene33543:intron | 40.0% | |
| AATTCGGTATGTCAACTGTC+CGG | + | chr8.2:3634971-3634990 | MS.gene33543:CDS | 40.0% | |
| ACAAACTTTGACTGGGAATG+TGG | - | chr8.2:3635400-3635419 | None:intergenic | 40.0% | |
| ACAACGCTATTGCTACATGT+TGG | - | chr8.2:3636629-3636648 | None:intergenic | 40.0% | |
| ACTAGTATTCAAACACCACC+AGG | - | chr8.2:3635845-3635864 | None:intergenic | 40.0% | |
| AGACACAAAAGGAGGCAATA+AGG | + | chr8.2:3633983-3634002 | MS.gene33543:CDS | 40.0% | |
| AGAGCCAACGATACAATCAT+CGG | + | chr8.2:3636550-3636569 | MS.gene33543:intron | 40.0% | |
| AGCAAGCACAAACTTTGACT+GGG | - | chr8.2:3635407-3635426 | None:intergenic | 40.0% | |
| AGGAAAAATATGACCCCTTG+TGG | + | chr8.2:3636885-3636904 | MS.gene33543:CDS | 40.0% | |
| ATAAGGTTGTTGCTACGTTG+TGG | + | chr8.2:3634000-3634019 | MS.gene33543:CDS | 40.0% | |
| ATCGGGGAGATTTCAGAATA+TGG | + | chr8.2:3636568-3636587 | MS.gene33543:intron | 40.0% | |
| ATTTCGATTGTTTAGGGACC+TGG | + | chr8.2:3635824-3635843 | MS.gene33543:intron | 40.0% | |
| CAAACTTTGACTGGGAATGT+GGG | - | chr8.2:3635399-3635418 | None:intergenic | 40.0% | |
| CGCAAATACTTGATGTACTC+GGG | - | chr8.2:3636947-3636966 | None:intergenic | 40.0% | |
| CGTGCTAAAAATTATGGCAG+AGG | - | chr8.2:3634902-3634921 | None:intergenic | 40.0% | |
| GAGTGAGTTGTTTGTTTGCT+TGG | - | chr8.2:3637009-3637028 | None:intergenic | 40.0% | |
| GCAAATACTTGATGTACTCG+GGG | - | chr8.2:3636946-3636965 | None:intergenic | 40.0% | |
| GCGCAAATACTTGATGTACT+CGG | - | chr8.2:3636948-3636967 | None:intergenic | 40.0% | |
| GCGCAAGTTTATCAACACAA+TGG | + | chr8.2:3636964-3636983 | MS.gene33543:CDS | 40.0% | |
| GGAAAAATATGACCCCTTGT+GGG | + | chr8.2:3636886-3636905 | MS.gene33543:CDS | 40.0% | |
| GGAAAGTTTCAAGGTTGCAA+TGG | - | chr8.2:3636925-3636944 | None:intergenic | 40.0% | |
| GGAATTTAATGAGGAGAGCA+TGG | - | chr8.2:3635539-3635558 | None:intergenic | 40.0% | |
| GGTTAAGTCAAGCTTTCATG+TGG | - | chr8.2:3635163-3635182 | None:intergenic | 40.0% | |
| TACCAGATGGGAAAACAATG+GGG | - | chr8.2:3635340-3635359 | None:intergenic | 40.0% | |
| TCCAGACATACCAAATGCTT+AGG | + | chr8.2:3637049-3637068 | MS.gene33543:CDS | 40.0% | |
| TCCTAAGCATTTGGTATGTC+TGG | - | chr8.2:3637053-3637072 | None:intergenic | 40.0% | |
| TGAAACTCCAACTGAAAAGG+GGG | + | chr8.2:3636121-3636140 | MS.gene33543:intron | 40.0% | |
| TGAGTTACTTACCTTACCTG+TGG | - | chr8.2:3634496-3634515 | None:intergenic | 40.0% | |
| TTCATAGGAGAGGTCCATTA+GGG | - | chr8.2:3636105-3636124 | None:intergenic | 40.0% | |
| TTTCATAGGAGAGGTCCATT+AGG | - | chr8.2:3636106-3636125 | None:intergenic | 40.0% | |
| TTTGTTTGCTTGGCTAGTGA+TGG | - | chr8.2:3636999-3637018 | None:intergenic | 40.0% | |
| ! | ACCCTGTAAAGGTCACATTT+TGG | + | chr8.2:3634835-3634854 | MS.gene33543:CDS | 40.0% |
| ! | CCCATTTTCACTCACCAAAA+AGG | - | chr8.2:3635658-3635677 | None:intergenic | 40.0% |
| ! | CTTCACAGTGCTATTCTTTC+AGG | + | chr8.2:3634798-3634817 | MS.gene33543:CDS | 40.0% |
| ! | GGGTAACCGCAAAACATTTT+TGG | + | chr8.2:3636449-3636468 | MS.gene33543:intron | 40.0% |
| ! | TCATGGTAATGCTGCTGATT+TGG | + | chr8.2:3634058-3634077 | MS.gene33543:CDS | 40.0% |
| !! | ACTTAGTGCCATCGATTCTT+TGG | - | chr8.2:3635487-3635506 | None:intergenic | 40.0% |
| !! | CATGGTAATGCTGCTGATTT+GGG | + | chr8.2:3634059-3634078 | MS.gene33543:CDS | 40.0% |
| !! | CTAGGGCTTTAGAAGAAGAT+AGG | - | chr8.2:3635620-3635639 | None:intergenic | 40.0% |
| !!! | AAAGTTTGCTTTTTTCCCGC+CGG | + | chr8.2:3633869-3633888 | MS.gene33543:CDS | 40.0% |
| !!! | ACACAGGGGTTGTTTTAACT+AGG | - | chr8.2:3635431-3635450 | None:intergenic | 40.0% |
| !!! | CACAGGGGTTGTTTTAACTA+GGG | - | chr8.2:3635430-3635449 | None:intergenic | 40.0% |
| ACTCAGATGGCTATCACAGT+TGG | - | chr8.2:3634626-3634645 | None:intergenic | 45.0% | |
| AGCCAACGATACAATCATCG+GGG | + | chr8.2:3636552-3636571 | MS.gene33543:intron | 45.0% | |
| ATATGGACGTTCCACAGGTA+AGG | + | chr8.2:3634482-3634501 | MS.gene33543:CDS | 45.0% | |
| CAGTTGGAGTTTCATAGGAG+AGG | - | chr8.2:3636115-3636134 | None:intergenic | 45.0% | |
| GAAACTCCAACTGAAAAGGG+GGG | + | chr8.2:3636122-3636141 | MS.gene33543:intron | 45.0% | |
| GAGCAAGCACAAACTTTGAC+TGG | - | chr8.2:3635408-3635427 | None:intergenic | 45.0% | |
| GAGCCAACGATACAATCATC+GGG | + | chr8.2:3636551-3636570 | MS.gene33543:intron | 45.0% | |
| GCTGGATACGAAGTTCCAAT+CGG | - | chr8.2:3636348-3636367 | None:intergenic | 45.0% | |
| GGATTGTTTACAGGGAACAG+AGG | + | chr8.2:3636814-3636833 | MS.gene33543:intron | 45.0% | |
| GGTGAGTGAAAATGGGTACT+GGG | + | chr8.2:3635662-3635681 | MS.gene33543:intron | 45.0% | |
| TATGGTCAATCGGTTGGAAG+TGG | + | chr8.2:3634726-3634745 | MS.gene33543:CDS | 45.0% | |
| TCATAGGAGAGGTCCATTAG+GGG | - | chr8.2:3636104-3636123 | None:intergenic | 45.0% | |
| TGGTGAGTGAAAATGGGTAC+TGG | + | chr8.2:3635661-3635680 | MS.gene33543:intron | 45.0% | |
| TGTACTCGGGGAAAGTTTCA+AGG | - | chr8.2:3636934-3636953 | None:intergenic | 45.0% | |
| TTCTCATGGAAAGCGGTTGT+GGG | + | chr8.2:3636853-3636872 | MS.gene33543:CDS | 45.0% | |
| ! | AAGGGTCTTGTACCCTGTAA+AGG | + | chr8.2:3634824-3634843 | MS.gene33543:CDS | 45.0% |
| ! | TAGTGGATGGTCATCATGGT+GGG | + | chr8.2:3636318-3636337 | MS.gene33543:intron | 45.0% |
| ! | TATGACCCCTTGTGGGTTAA+AGG | + | chr8.2:3636893-3636912 | MS.gene33543:CDS | 45.0% |
| ! | TGTGGAAACACCCTTTTGCA+AGG | + | chr8.2:3634018-3634037 | MS.gene33543:CDS | 45.0% |
| ! | TTAGTGGATGGTCATCATGG+TGG | + | chr8.2:3636317-3636336 | MS.gene33543:intron | 45.0% |
| ! | TTGAGGCTTTTGTCCTGATG+CGG | + | chr8.2:3635097-3635116 | MS.gene33543:intron | 45.0% |
| !! | GAGCTCTAAGCTCAATGAAG+AGG | - | chr8.2:3634097-3634116 | None:intergenic | 45.0% |
| !! | GATGGGGTGTTGAAGATTTC+CGG | + | chr8.2:3633927-3633946 | MS.gene33543:CDS | 45.0% |
| !!! | TTTTTTTTTTTTTTTTGAAT+TGG | + | chr8.2:3634215-3634234 | MS.gene33543:intron | 5.0% |
| AAAGCCGACATGGAAGACAG+AGG | - | chr8.2:3635560-3635579 | None:intergenic | 50.0% | |
| ACTTTGACTGGGAATGTGGG+TGG | - | chr8.2:3635396-3635415 | None:intergenic | 50.0% | |
| ATTGGTAGAACGGGGACACA+CGG | - | chr8.2:3636415-3636434 | None:intergenic | 50.0% | |
| CCTCCACCTTTAACCCACAA+GGG | - | chr8.2:3636902-3636921 | None:intergenic | 50.0% | |
| CTCCACCTTTAACCCACAAG+GGG | - | chr8.2:3636901-3636920 | None:intergenic | 50.0% | |
| CTCCCCGATGATTGTATCGT+TGG | - | chr8.2:3636557-3636576 | None:intergenic | 50.0% | |
| GTTCTCATGGAAAGCGGTTG+TGG | + | chr8.2:3636852-3636871 | MS.gene33543:CDS | 50.0% | |
| GTTGAAGATTTCCGGCACGA+CGG | + | chr8.2:3633935-3633954 | MS.gene33543:CDS | 50.0% | |
| TCGATTGTTTAGGGACCTGG+TGG | + | chr8.2:3635827-3635846 | MS.gene33543:intron | 50.0% | |
| TCTGGATATGGACGTTCCAC+AGG | + | chr8.2:3634477-3634496 | MS.gene33543:CDS | 50.0% | |
| TTAGAAGCCAAGTGCAGCGT+CGG | - | chr8.2:3634753-3634772 | None:intergenic | 50.0% | |
| ! | ATCATGGTGGGATGTCCGAT+TGG | + | chr8.2:3636330-3636349 | MS.gene33543:intron | 50.0% |
| ! | CACCCCATTGTTTTCCCATC+TGG | + | chr8.2:3635335-3635354 | MS.gene33543:intron | 50.0% |
| ! | GAGGAGAGCATGGGATCAAA+TGG | - | chr8.2:3635529-3635548 | None:intergenic | 50.0% |
| ! | GGATGGATCTAAAGCCGACA+TGG | - | chr8.2:3635570-3635589 | None:intergenic | 50.0% |
| !! | ACTTCGTATGTTGGTGGCTC+CGG | - | chr8.2:3633891-3633910 | None:intergenic | 50.0% |
| !! | GAGTGAAAATGGGTACTGGG+TGG | + | chr8.2:3635665-3635684 | MS.gene33543:intron | 50.0% |
| ACTCCAACTGAAAAGGGGGG+CGG | + | chr8.2:3636125-3636144 | MS.gene33543:intron | 55.0% | |
| GCCTCCACCTTTAACCCACA+AGG | - | chr8.2:3636903-3636922 | None:intergenic | 55.0% | |
| TAATGTCACGGGAACGGTGG+CGG | + | chr8.2:3633845-3633864 | MS.gene33543:CDS | 55.0% | |
| ! | CCCTTGTGGGTTAAAGGTGG+AGG | + | chr8.2:3636899-3636918 | MS.gene33543:CDS | 55.0% |
| ! | GACCCCTTGTGGGTTAAAGG+TGG | + | chr8.2:3636896-3636915 | MS.gene33543:CDS | 55.0% |
| ! | GACGCTTTTATCCGTCGTGC+CGG | - | chr8.2:3633949-3633968 | None:intergenic | 55.0% |
| AAGTGGACCGACGCTGCACT+TGG | + | chr8.2:3634743-3634762 | MS.gene33543:CDS | 60.0% | |
| GCGGTTGTGGGAGCTCTCAA+AGG | + | chr8.2:3636865-3636884 | MS.gene33543:CDS | 60.0% | |
| GGGTAATGTCACGGGAACGG+TGG | + | chr8.2:3633842-3633861 | MS.gene33543:CDS | 60.0% | |
| ! | CATCCGCCCCCCTTTTCAGT+TGG | - | chr8.2:3636131-3636150 | None:intergenic | 60.0% |
| !! | TCGTATGTTGGTGGCTCCGG+CGG | - | chr8.2:3633888-3633907 | None:intergenic | 60.0% |
| !! | CGTATGTTGGTGGCTCCGGC+GGG | - | chr8.2:3633887-3633906 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 3633840 | 3637087 | 3633840 | ID=MS.gene33543 |
| chr8.2 | mRNA | 3633840 | 3637087 | 3633840 | ID=MS.gene33543.t1;Parent=MS.gene33543 |
| chr8.2 | exon | 3633840 | 3634138 | 3633840 | ID=MS.gene33543.t1.exon1;Parent=MS.gene33543.t1 |
| chr8.2 | CDS | 3633840 | 3634138 | 3633840 | ID=cds.MS.gene33543.t1;Parent=MS.gene33543.t1 |
| chr8.2 | exon | 3634467 | 3634503 | 3634467 | ID=MS.gene33543.t1.exon2;Parent=MS.gene33543.t1 |
| chr8.2 | CDS | 3634467 | 3634503 | 3634467 | ID=cds.MS.gene33543.t1;Parent=MS.gene33543.t1 |
| chr8.2 | exon | 3634636 | 3634872 | 3634636 | ID=MS.gene33543.t1.exon3;Parent=MS.gene33543.t1 |
| chr8.2 | CDS | 3634636 | 3634872 | 3634636 | ID=cds.MS.gene33543.t1;Parent=MS.gene33543.t1 |
| chr8.2 | exon | 3634960 | 3635007 | 3634960 | ID=MS.gene33543.t1.exon4;Parent=MS.gene33543.t1 |
| chr8.2 | CDS | 3634960 | 3635007 | 3634960 | ID=cds.MS.gene33543.t1;Parent=MS.gene33543.t1 |
| chr8.2 | exon | 3636827 | 3637087 | 3636827 | ID=MS.gene33543.t1.exon5;Parent=MS.gene33543.t1 |
| chr8.2 | CDS | 3636827 | 3637087 | 3636827 | ID=cds.MS.gene33543.t1;Parent=MS.gene33543.t1 |
| Gene Sequence |
| Protein sequence |
