Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042261.t1 | XP_024637279.1 | 97.6 | 293 | 7 | 0 | 1 | 293 | 1 | 293 | 4.10E-168 | 600.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042261.t1 | Q7ZVZ7 | 46.7 | 261 | 126 | 6 | 8 | 257 | 29 | 287 | 3.8e-61 | 236.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042261.t1 | A0A396IJ93 | 97.6 | 293 | 7 | 0 | 1 | 293 | 1 | 293 | 3.0e-168 | 600.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene042261 | MS.gene80896 | PPI |
| MS.gene042261 | MS.gene012602 | PPI |
| MS.gene042261 | MS.gene33543 | PPI |
| MS.gene074198 | MS.gene042261 | PPI |
| MS.gene074512 | MS.gene042261 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042261.t1 | MTR_7g032640 | 65.019 | 263 | 91 | 1 | 1 | 262 | 1 | 263 | 2.72e-126 | 365 |
| MS.gene042261.t1 | MTR_3g075410 | 63.498 | 263 | 95 | 1 | 1 | 262 | 1 | 263 | 3.68e-125 | 362 |
| MS.gene042261.t1 | MTR_7g017430 | 65.660 | 265 | 90 | 1 | 1 | 264 | 1 | 265 | 6.35e-125 | 362 |
| MS.gene042261.t1 | MTR_8g037335 | 60.884 | 294 | 104 | 4 | 1 | 287 | 1 | 290 | 7.11e-124 | 357 |
| MS.gene042261.t1 | MTR_5g029210 | 62.544 | 283 | 97 | 3 | 1 | 276 | 1 | 281 | 1.19e-122 | 357 |
| MS.gene042261.t1 | MTR_6g018930 | 60.357 | 280 | 98 | 2 | 1 | 267 | 1 | 280 | 4.15e-121 | 351 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042261.t1 | AT4G31020 | 77.211 | 294 | 66 | 1 | 1 | 293 | 1 | 294 | 3.34e-174 | 483 |
| MS.gene042261.t1 | AT4G31020 | 77.211 | 294 | 66 | 1 | 1 | 293 | 1 | 294 | 3.34e-174 | 483 |
| MS.gene042261.t1 | AT2G24320 | 74.150 | 294 | 74 | 2 | 1 | 293 | 1 | 293 | 2.78e-169 | 471 |
| MS.gene042261.t1 | AT2G24320 | 74.216 | 287 | 72 | 2 | 8 | 293 | 1 | 286 | 2.92e-165 | 460 |
| MS.gene042261.t1 | AT3G01690 | 63.736 | 273 | 98 | 1 | 1 | 272 | 1 | 273 | 2.22e-128 | 370 |
| MS.gene042261.t1 | AT5G14390 | 62.724 | 279 | 103 | 1 | 1 | 278 | 1 | 279 | 1.40e-127 | 368 |
| MS.gene042261.t1 | AT3G30380 | 61.324 | 287 | 106 | 3 | 1 | 284 | 1 | 285 | 2.02e-124 | 360 |
| MS.gene042261.t1 | AT3G30380 | 61.324 | 287 | 106 | 3 | 1 | 284 | 1 | 285 | 4.92e-124 | 360 |
| MS.gene042261.t1 | AT5G38220 | 61.837 | 283 | 106 | 2 | 1 | 283 | 1 | 281 | 1.06e-122 | 354 |
| MS.gene042261.t1 | AT5G38220 | 61.837 | 283 | 106 | 2 | 1 | 283 | 1 | 281 | 1.06e-122 | 354 |
| MS.gene042261.t1 | AT1G66900 | 60.284 | 282 | 98 | 3 | 1 | 278 | 1 | 272 | 2.14e-120 | 346 |
| MS.gene042261.t1 | AT4G24760 | 60.837 | 263 | 102 | 1 | 1 | 262 | 1 | 263 | 1.09e-119 | 348 |
| MS.gene042261.t1 | AT1G32190 | 59.353 | 278 | 103 | 1 | 1 | 268 | 1 | 278 | 9.74e-118 | 345 |
| MS.gene042261.t1 | AT1G13610 | 57.778 | 270 | 108 | 2 | 1 | 265 | 1 | 269 | 4.23e-109 | 320 |
| MS.gene042261.t1 | AT5G38220 | 63.285 | 207 | 75 | 1 | 1 | 207 | 1 | 206 | 2.28e-86 | 258 |
| MS.gene042261.t1 | AT1G32190 | 64.744 | 156 | 55 | 0 | 113 | 268 | 38 | 193 | 1.20e-70 | 222 |
| MS.gene042261.t1 | AT1G13610 | 65.132 | 152 | 53 | 0 | 114 | 265 | 18 | 169 | 8.04e-68 | 212 |
Find 73 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGCTATTCTTTCAGGATTA+AGG | 0.129442 | 8.4:+1930054 | MS.gene042261:CDS |
| CTTCACAGTGCTATTCTTTC+AGG | 0.153165 | 8.4:+1930047 | MS.gene042261:CDS |
| TCATGGTAATGCTGCTGATT+TGG | 0.244610 | 8.4:+1929280 | MS.gene042261:CDS |
| AACCAAAATGTGACCTTTAC+AGG | 0.254772 | 8.4:-1930086 | None:intergenic |
| AATTTATTGAGGAATGAATA+TGG | 0.259059 | 8.4:+1929927 | MS.gene042261:CDS |
| TATGACCCCTTGTGGGTTAA+AGG | 0.264120 | 8.4:+1932144 | MS.gene042261:CDS |
| GATGGGGTGTTGAAGATTTC+CGG | 0.280498 | 8.4:+1929149 | MS.gene042261:CDS |
| CTTAGGATTTGTTAAAAGAT+AGG | 0.296850 | 8.4:+1932317 | MS.gene042261:CDS |
| CATGGTAATGCTGCTGATTT+GGG | 0.302622 | 8.4:+1929281 | MS.gene042261:CDS |
| TCCTAAGCATTTGGTATGTC+TGG | 0.309595 | 8.4:-1932301 | None:intergenic |
| TGCTATTCTTTCAGGATTAA+GGG | 0.314061 | 8.4:+1930055 | MS.gene042261:CDS |
| AGCTATGATTATTCTGGATA+TGG | 0.314458 | 8.4:+1929714 | MS.gene042261:intron |
| ACCCTGTAAAGGTCACATTT+TGG | 0.331867 | 8.4:+1930084 | MS.gene042261:CDS |
| TTCAGAACATAGACAAAATT+CGG | 0.348913 | 8.4:+1930204 | MS.gene042261:intron |
| TTTAACAAATCCTAAGCATT+TGG | 0.350665 | 8.4:-1932310 | None:intergenic |
| GAGTGAGTTGTTTGTTTGCT+TGG | 0.379199 | 8.4:-1932257 | None:intergenic |
| AATATAGTAAACCTTGCAAA+AGG | 0.412344 | 8.4:-1929251 | None:intergenic |
| GTTCTCATGGAAAGCGGTTG+TGG | 0.413811 | 8.4:+1932103 | MS.gene042261:CDS |
| GAAATTGTTGATTGTTCTCA+TGG | 0.418735 | 8.4:+1932090 | MS.gene042261:CDS |
| AGACACAAAAGGAGGCAATA+AGG | 0.435883 | 8.4:+1929205 | MS.gene042261:CDS |
| CGCAAATACTTGATGTACTC+GGG | 0.439325 | 8.4:-1932195 | None:intergenic |
| ACTTCGTATGTTGGTGGCTC+CGG | 0.442509 | 8.4:-1929110 | None:intergenic |
| TTCTCATGGAAAGCGGTTGT+GGG | 0.445570 | 8.4:+1932104 | MS.gene042261:CDS |
| TCTTTGTAAACTTCGTATGT+TGG | 0.468696 | 8.4:-1929119 | None:intergenic |
| TTGTAAACTTCGTATGTTGG+TGG | 0.474036 | 8.4:-1929116 | None:intergenic |
| TAATGTCACGGGAACGGTGG+CGG | 0.478677 | 8.4:+1929067 | MS.gene042261:CDS |
| TTTGTTTGCTTGGCTAGTGA+TGG | 0.479942 | 8.4:-1932247 | None:intergenic |
| TATGGTCAATCGGTTGGAAG+TGG | 0.482533 | 8.4:+1929975 | MS.gene042261:CDS |
| TGTACTCGGGGAAAGTTTCA+AGG | 0.485576 | 8.4:-1932182 | None:intergenic |
| GTTTACAAAGATAACGATGA+TGG | 0.495815 | 8.4:+1929131 | MS.gene042261:CDS |
| TCGTATGTTGGTGGCTCCGG+CGG | 0.498129 | 8.4:-1929107 | None:intergenic |
| AGGCTGTATATAATTTATTG+AGG | 0.499243 | 8.4:+1929916 | MS.gene042261:CDS |
| TCCAGACATACCAAATGCTT+AGG | 0.502115 | 8.4:+1932300 | MS.gene042261:CDS |
| TCTGGATATGGACGTTCCAC+AGG | 0.507640 | 8.4:+1929726 | MS.gene042261:CDS |
| GCGCAAATACTTGATGTACT+CGG | 0.516953 | 8.4:-1932196 | None:intergenic |
| TTTACAAAGATAACGATGAT+GGG | 0.521409 | 8.4:+1929132 | MS.gene042261:CDS |
| CCCTTGTGGGTTAAAGGTGG+AGG | 0.522765 | 8.4:+1932150 | MS.gene042261:CDS |
| GTTCATATTGTAGACACAAA+AGG | 0.523072 | 8.4:+1929194 | MS.gene042261:CDS |
| CTGTAAATGGGTAATGTCAC+GGG | 0.526702 | 8.4:+1929056 | None:intergenic |
| TTTACTATATTGTACTCTCA+TGG | 0.531187 | 8.4:+1929263 | MS.gene042261:CDS |
| TGTCTGGAATCAGTAATACT+AGG | 0.534886 | 8.4:-1932285 | None:intergenic |
| TAATATGTGTTGAACTCAGA+TGG | 0.543757 | 8.4:-1929885 | None:intergenic |
| AAGGGTCTTGTACCCTGTAA+AGG | 0.543937 | 8.4:+1930073 | MS.gene042261:CDS |
| ATAAGGTTGTTGCTACGTTG+TGG | 0.553608 | 8.4:+1929222 | MS.gene042261:CDS |
| CGTATGTTGGTGGCTCCGGC+GGG | 0.555441 | 8.4:-1929106 | None:intergenic |
| ATATAGTAAACCTTGCAAAA+GGG | 0.557024 | 8.4:-1929250 | None:intergenic |
| ATATGGACGTTCCACAGGTA+AGG | 0.559847 | 8.4:+1929731 | MS.gene042261:CDS |
| TCTGTAAATGGGTAATGTCA+CGG | 0.560811 | 8.4:+1929055 | None:intergenic |
| TCTAAATTGCAAAAGTTGAG+AGG | 0.565951 | 8.4:+1930017 | MS.gene042261:CDS |
| ACCAAAATGTGACCTTTACA+GGG | 0.571897 | 8.4:-1930085 | None:intergenic |
| GGAAAGTTTCAAGGTTGCAA+TGG | 0.579596 | 8.4:-1932173 | None:intergenic |
| AAGTGGACCGACGCTACACT+TGG | 0.579761 | 8.4:+1929992 | MS.gene042261:CDS |
| GCCTCCACCTTTAACCCACA+AGG | 0.587124 | 8.4:-1932151 | None:intergenic |
| AATTCGGTATGTCAACTGTC+CGG | 0.588609 | 8.4:+1930220 | MS.gene042261:CDS |
| ATCTTCGTGTTAATATCATG+AGG | 0.591275 | 8.4:+1929339 | MS.gene042261:CDS |
| AATGGGTAATGTCACGGGAA+CGG | 0.599267 | 8.4:+1929061 | None:intergenic |
| GAGCTCTAAGCTCAATGAAG+AGG | 0.600995 | 8.4:-1929316 | None:intergenic |
| GCGGTTGTGGGAGCTCTCAA+AGG | 0.609084 | 8.4:+1932116 | MS.gene042261:CDS |
| GGGTAATGTCACGGGAACGG+TGG | 0.610257 | 8.4:+1929064 | MS.gene042261:CDS |
| TGAGTTACTTACCTTACCTG+TGG | 0.616944 | 8.4:-1929742 | None:intergenic |
| GGATTGTTTACAGGGAACAG+AGG | 0.618205 | 8.4:+1932065 | MS.gene042261:intron |
| CAACACATATTACGACATAG+AGG | 0.618835 | 8.4:+1929896 | MS.gene042261:CDS |
| GACCCCTTGTGGGTTAAAGG+TGG | 0.621379 | 8.4:+1932147 | MS.gene042261:CDS |
| TTAGAAGCCAAGTGTAGCGT+CGG | 0.628834 | 8.4:-1929999 | None:intergenic |
| GCGCAAGTTTATCAACACAA+TGG | 0.634079 | 8.4:+1932215 | MS.gene042261:CDS |
| GTTGAAGATTTCCGGCACGA+CGG | 0.635860 | 8.4:+1929157 | MS.gene042261:CDS |
| CTTACATGTATAACAAACAC+CGG | 0.637648 | 8.4:-1930239 | None:intergenic |
| TTGATTGTTCTCATGGAAAG+CGG | 0.658164 | 8.4:+1932097 | MS.gene042261:CDS |
| CTCCACCTTTAACCCACAAG+GGG | 0.660635 | 8.4:-1932149 | None:intergenic |
| CCTCCACCTTTAACCCACAA+GGG | 0.665071 | 8.4:-1932150 | None:intergenic |
| TTACAAAGATAACGATGATG+GGG | 0.668143 | 8.4:+1929133 | MS.gene042261:CDS |
| CATATTGTAGACACAAAAGG+AGG | 0.669657 | 8.4:+1929197 | MS.gene042261:CDS |
| GCAAATACTTGATGTACTCG+GGG | 0.680722 | 8.4:-1932194 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAATTATTTTCTAATTGA+GGG | - | chr8.4:1930433-1930452 | None:intergenic | 10.0% |
| !! | ACAATACAATAATGAAATTT+AGG | + | chr8.4:1931266-1931285 | MS.gene042261:intron | 15.0% |
| !! | TATATTATATAAATCTATGC+TGG | - | chr8.4:1931617-1931636 | None:intergenic | 15.0% |
| !!! | AAATAATTTTACAATAGAAG+AGG | + | chr8.4:1930442-1930461 | MS.gene042261:intron | 15.0% |
| !!! | GTAAAATTATTTTCTAATTG+AGG | - | chr8.4:1930434-1930453 | None:intergenic | 15.0% |
| !!! | TTTATATAATATATGCCTTT+TGG | + | chr8.4:1931624-1931643 | MS.gene042261:intron | 15.0% |
| !!! | TTTCTATACTTTGTTATAAA+AGG | - | chr8.4:1931136-1931155 | None:intergenic | 15.0% |
| !! | AATTTATTGAGGAATGAATA+TGG | + | chr8.4:1929927-1929946 | MS.gene042261:CDS | 20.0% |
| !! | AGATCTTTCTAAGTATTTAT+TGG | + | chr8.4:1929673-1929692 | MS.gene042261:intron | 20.0% |
| !! | TACCTATTAACATAATCTTA+AGG | - | chr8.4:1931215-1931234 | None:intergenic | 20.0% |
| !! | TACCTTAAGATTATGTTAAT+AGG | + | chr8.4:1931210-1931229 | MS.gene042261:intron | 20.0% |
| !! | TCATTATTGTATTGTTCTAA+AGG | - | chr8.4:1931261-1931280 | None:intergenic | 20.0% |
| !! | TTAAGATTATGTTAATAGGT+AGG | + | chr8.4:1931214-1931233 | MS.gene042261:intron | 20.0% |
| !!! | AAAAGTATATAGTACCTTTT+TGG | + | chr8.4:1930892-1930911 | MS.gene042261:intron | 20.0% |
| !!! | AAGAAGATATGTTTCTTTTA+TGG | - | chr8.4:1930842-1930861 | None:intergenic | 20.0% |
| !!! | ATGTTTTATTTCGATTGTTT+AGG | + | chr8.4:1931068-1931087 | MS.gene042261:intron | 20.0% |
| !!! | TGTTTTATTTCGATTGTTTA+GGG | + | chr8.4:1931069-1931088 | MS.gene042261:intron | 20.0% |
| ! | AAATAAAACATTTCAGTGGA+TGG | - | chr8.4:1931059-1931078 | None:intergenic | 25.0% |
| ! | AATATAGTAAACCTTGCAAA+AGG | - | chr8.4:1929254-1929273 | None:intergenic | 25.0% |
| ! | ACCAATACTATTGATAGAAT+GGG | + | chr8.4:1931680-1931699 | MS.gene042261:intron | 25.0% |
| ! | AGCATGCAAAATTGTATATA+AGG | - | chr8.4:1929379-1929398 | None:intergenic | 25.0% |
| ! | AGGCTGTATATAATTTATTG+AGG | + | chr8.4:1929916-1929935 | MS.gene042261:CDS | 25.0% |
| ! | ATATAGTAAACCTTGCAAAA+GGG | - | chr8.4:1929253-1929272 | None:intergenic | 25.0% |
| ! | ATCGAAATAAAACATTTCAG+TGG | - | chr8.4:1931063-1931082 | None:intergenic | 25.0% |
| ! | CATCTGATATGATAGATTTA+GGG | - | chr8.4:1930965-1930984 | None:intergenic | 25.0% |
| ! | GAATAAAGAAACAATAACCA+TGG | - | chr8.4:1929490-1929509 | None:intergenic | 25.0% |
| ! | GATCAAATATAACCAGAAAA+GGG | - | chr8.4:1930314-1930333 | None:intergenic | 25.0% |
| ! | TACCAATACTATTGATAGAA+TGG | + | chr8.4:1931679-1931698 | MS.gene042261:intron | 25.0% |
| ! | TCAATTTCAGTATTTCTTCT+AGG | - | chr8.4:1931763-1931782 | None:intergenic | 25.0% |
| ! | TCATCTGATATGATAGATTT+AGG | - | chr8.4:1930966-1930985 | None:intergenic | 25.0% |
| ! | TGATCAAATATAACCAGAAA+AGG | - | chr8.4:1930315-1930334 | None:intergenic | 25.0% |
| ! | TTCAGAACATAGACAAAATT+CGG | + | chr8.4:1930204-1930223 | MS.gene042261:intron | 25.0% |
| ! | TTCTATCTATGTATGTAATC+AGG | + | chr8.4:1930273-1930292 | MS.gene042261:intron | 25.0% |
| ! | TTGCTTAGTCTCATTATTTA+CGG | + | chr8.4:1931972-1931991 | MS.gene042261:intron | 25.0% |
| ! | TTTAACAAATCCTAAGCATT+TGG | - | chr8.4:1932313-1932332 | None:intergenic | 25.0% |
| ! | TTTACAAAGATAACGATGAT+GGG | + | chr8.4:1929132-1929151 | MS.gene042261:CDS | 25.0% |
| ! | TTTACTATATTGTACTCTCA+TGG | + | chr8.4:1929263-1929282 | MS.gene042261:CDS | 25.0% |
| !! | AGATATGTTTCTTTTATGGA+TGG | - | chr8.4:1930838-1930857 | None:intergenic | 25.0% |
| !! | ATTATATTTTTCTCCCTGTT+TGG | + | chr8.4:1931183-1931202 | MS.gene042261:intron | 25.0% |
| !! | CAATAATGAAATTTAGGTTC+TGG | + | chr8.4:1931272-1931291 | MS.gene042261:intron | 25.0% |
| !! | TAAACACCAAAAATGTTTTG+CGG | - | chr8.4:1931709-1931728 | None:intergenic | 25.0% |
| !! | TATTAGACTTTGTAGCTTTA+TGG | + | chr8.4:1929616-1929635 | MS.gene042261:intron | 25.0% |
| !! | TGATCAATAGTTTCTTTTTG+AGG | + | chr8.4:1930329-1930348 | MS.gene042261:intron | 25.0% |
| !!! | AATAGTTTTGTTTCTGCTTA+TGG | + | chr8.4:1932044-1932063 | MS.gene042261:intron | 25.0% |
| !!! | AATTTGTTGTGCATATTTAG+TGG | + | chr8.4:1931552-1931571 | MS.gene042261:intron | 25.0% |
| !!! | AGGTACTATATACTTTTTCT+AGG | - | chr8.4:1930889-1930908 | None:intergenic | 25.0% |
| !!! | CAAGAAGATTTGATTTTGTA+TGG | + | chr8.4:1929957-1929976 | MS.gene042261:CDS | 25.0% |
| !!! | GGTACTATATACTTTTTCTA+GGG | - | chr8.4:1930888-1930907 | None:intergenic | 25.0% |
| !!! | TATCAATAGTATTGGTAGAA+CGG | - | chr8.4:1931676-1931695 | None:intergenic | 25.0% |
| !!! | TTTGATTTTGTATGGTCAAT+CGG | + | chr8.4:1929965-1929984 | MS.gene042261:CDS | 25.0% |
| !!! | TTTTTTTTTTGAATTGGCCA+TGG | + | chr8.4:1929470-1929489 | MS.gene042261:intron | 25.0% |
| AAAAACACCAAGATTGAACT+TGG | - | chr8.4:1929563-1929582 | None:intergenic | 30.0% | |
| AAACTCCGTGCTAAAAATTA+TGG | - | chr8.4:1930157-1930176 | None:intergenic | 30.0% | |
| AAATCATCATCAAGCTAAAC+AGG | - | chr8.4:1930386-1930405 | None:intergenic | 30.0% | |
| ACCCATTCTATCAATAGTAT+TGG | - | chr8.4:1931684-1931703 | None:intergenic | 30.0% | |
| AGCTATGATTATTCTGGATA+TGG | + | chr8.4:1929714-1929733 | MS.gene042261:intron | 30.0% | |
| AGTCTCATTATTTACGGATT+CGG | + | chr8.4:1931978-1931997 | MS.gene042261:intron | 30.0% | |
| ATCTTCGTGTTAATATCATG+AGG | + | chr8.4:1929339-1929358 | MS.gene042261:CDS | 30.0% | |
| CTTAAGGTATATACCAAACA+GGG | - | chr8.4:1931199-1931218 | None:intergenic | 30.0% | |
| CTTACATGTATAACAAACAC+CGG | - | chr8.4:1930242-1930261 | None:intergenic | 30.0% | |
| GATAGATAAATGCTACCAAA+AGG | - | chr8.4:1931642-1931661 | None:intergenic | 30.0% | |
| GTTCATATTGTAGACACAAA+AGG | + | chr8.4:1929194-1929213 | MS.gene042261:CDS | 30.0% | |
| GTTTACAAAGATAACGATGA+TGG | + | chr8.4:1929131-1929150 | MS.gene042261:CDS | 30.0% | |
| TAAAAGCCTCAGTTTGAATA+AGG | + | chr8.4:1930711-1930730 | MS.gene042261:intron | 30.0% | |
| TAATATGTGTTGAACTCAGA+TGG | - | chr8.4:1929888-1929907 | None:intergenic | 30.0% | |
| TATGAAACTCCAACTGAAAA+GGG | + | chr8.4:1931370-1931389 | MS.gene042261:intron | 30.0% | |
| TCTAAATTGCAAAAGTTGAG+AGG | + | chr8.4:1930017-1930036 | MS.gene042261:CDS | 30.0% | |
| TCTTAAGGTATATACCAAAC+AGG | - | chr8.4:1931200-1931219 | None:intergenic | 30.0% | |
| TCTTTGTAAACTTCGTATGT+TGG | - | chr8.4:1929122-1929141 | None:intergenic | 30.0% | |
| TGCTATTCTTTCAGGATTAA+GGG | + | chr8.4:1930055-1930074 | MS.gene042261:CDS | 30.0% | |
| TTACAAAGATAACGATGATG+GGG | + | chr8.4:1929133-1929152 | MS.gene042261:CDS | 30.0% | |
| TTAGGTTAACATGCATGAAA+AGG | - | chr8.4:1931476-1931495 | None:intergenic | 30.0% | |
| TTCATTGATATATCCGAATC+AGG | - | chr8.4:1930621-1930640 | None:intergenic | 30.0% | |
| TTTCATGCATGTTAACCTAA+AGG | + | chr8.4:1931476-1931495 | MS.gene042261:intron | 30.0% | |
| ! | CTTTTATATGTGAGTACACA+GGG | - | chr8.4:1930697-1930716 | None:intergenic | 30.0% |
| ! | GAAATTGTTGATTGTTCTCA+TGG | + | chr8.4:1932090-1932109 | MS.gene042261:CDS | 30.0% |
| ! | TTTTATATGTGAGTACACAG+GGG | - | chr8.4:1930696-1930715 | None:intergenic | 30.0% |
| ! | TTTTGCAGCTATGATTATTC+TGG | + | chr8.4:1929708-1929727 | MS.gene042261:intron | 30.0% |
| !! | AGAAAGCATCACAATTGATA+TGG | + | chr8.4:1932007-1932026 | MS.gene042261:intron | 30.0% |
| !! | ATCAATAGTATTGGTAGAAC+GGG | - | chr8.4:1931675-1931694 | None:intergenic | 30.0% |
| AACCAAAATGTGACCTTTAC+AGG | - | chr8.4:1930089-1930108 | None:intergenic | 35.0% | |
| AATAAGGTCCAAAGAATCGA+TGG | + | chr8.4:1930727-1930746 | MS.gene042261:intron | 35.0% | |
| AATACCAGATGGGAAAACAA+TGG | - | chr8.4:1930593-1930612 | None:intergenic | 35.0% | |
| ACAAACTTTGACTAGGAATG+TGG | - | chr8.4:1930651-1930670 | None:intergenic | 35.0% | |
| ACCAAAATGTGACCTTTACA+GGG | - | chr8.4:1930088-1930107 | None:intergenic | 35.0% | |
| ATACCAGATGGGAAAACAAT+GGG | - | chr8.4:1930592-1930611 | None:intergenic | 35.0% | |
| ATCAGGATTTGAATACCAGA+TGG | - | chr8.4:1930604-1930623 | None:intergenic | 35.0% | |
| ATGAAACTCCAACTGAAAAG+GGG | + | chr8.4:1931371-1931390 | MS.gene042261:intron | 35.0% | |
| ATGAGTGCAGTTCAATCTTA+TGG | + | chr8.4:1931399-1931418 | MS.gene042261:intron | 35.0% | |
| ATTGGGGAGATTTCAGAATA+TGG | + | chr8.4:1931819-1931838 | MS.gene042261:intron | 35.0% | |
| CAAACTTTGACTAGGAATGT+GGG | - | chr8.4:1930650-1930669 | None:intergenic | 35.0% | |
| CAACACATATTACGACATAG+AGG | + | chr8.4:1929896-1929915 | MS.gene042261:CDS | 35.0% | |
| CATATTGTAGACACAAAAGG+AGG | + | chr8.4:1929197-1929216 | MS.gene042261:CDS | 35.0% | |
| CTATGAAACTCCAACTGAAA+AGG | + | chr8.4:1931369-1931388 | MS.gene042261:intron | 35.0% | |
| CTGGTATTCAAATCCTGATT+CGG | + | chr8.4:1930605-1930624 | MS.gene042261:intron | 35.0% | |
| GAAGACAGAGGAATTTAATG+AGG | - | chr8.4:1930799-1930818 | None:intergenic | 35.0% | |
| GTATTCGTTTGTAGTGAGTA+GGG | + | chr8.4:1931423-1931442 | MS.gene042261:intron | 35.0% | |
| GTCTCATTATTTACGGATTC+GGG | + | chr8.4:1931979-1931998 | MS.gene042261:intron | 35.0% | |
| GTTGCCTAGTTTATGAGATA+TGG | + | chr8.4:1931854-1931873 | MS.gene042261:intron | 35.0% | |
| GTTGTAGTCATCGTTGTAAA+TGG | + | chr8.4:1931895-1931914 | MS.gene042261:intron | 35.0% | |
| TCAGGATTTGAATACCAGAT+GGG | - | chr8.4:1930603-1930622 | None:intergenic | 35.0% | |
| TGTATTCGTTTGTAGTGAGT+AGG | + | chr8.4:1931422-1931441 | MS.gene042261:intron | 35.0% | |
| TGTTGTGCATATTTAGTGGA+TGG | + | chr8.4:1931556-1931575 | MS.gene042261:intron | 35.0% | |
| TTCACTTCCAAGTTCAATCT+TGG | + | chr8.4:1929553-1929572 | MS.gene042261:intron | 35.0% | |
| TTGATTGTTCTCATGGAAAG+CGG | + | chr8.4:1932097-1932116 | MS.gene042261:CDS | 35.0% | |
| TTGGCCATATCTCATAAACT+AGG | - | chr8.4:1931861-1931880 | None:intergenic | 35.0% | |
| TTGTAAACTTCGTATGTTGG+TGG | - | chr8.4:1929119-1929138 | None:intergenic | 35.0% | |
| TTTGGACCTTATTCAAACTG+AGG | - | chr8.4:1930720-1930739 | None:intergenic | 35.0% | |
| ! | ATTTTGTATGGTCAATCGGT+TGG | + | chr8.4:1929969-1929988 | MS.gene042261:CDS | 35.0% |
| ! | CAATTGAGTTTTCTTTCTGG+AGG | + | chr8.4:1931023-1931042 | MS.gene042261:intron | 35.0% |
| ! | CTGCTTATGGATTGTTTACA+GGG | + | chr8.4:1932057-1932076 | MS.gene042261:intron | 35.0% |
| ! | CTTTTCAGTTGGAGTTTCAT+AGG | - | chr8.4:1931371-1931390 | None:intergenic | 35.0% |
| ! | GAATTTAATGAGGAGAGCAT+GGG | - | chr8.4:1930789-1930808 | None:intergenic | 35.0% |
| ! | GCAGAGGTATAAGAATTGTA+AGG | - | chr8.4:1930135-1930154 | None:intergenic | 35.0% |
| ! | GCTCAATTGAGTTTTCTTTC+TGG | + | chr8.4:1931020-1931039 | MS.gene042261:intron | 35.0% |
| ! | GCTTTTATATGTGAGTACAC+AGG | - | chr8.4:1930698-1930717 | None:intergenic | 35.0% |
| ! | GTGCTATTCTTTCAGGATTA+AGG | + | chr8.4:1930054-1930073 | MS.gene042261:CDS | 35.0% |
| ! | TAGATTGCTGTTGTACCTTT+AGG | - | chr8.4:1931494-1931513 | None:intergenic | 35.0% |
| ! | TATTTAGTGGATGGTCATCA+TGG | + | chr8.4:1931565-1931584 | MS.gene042261:intron | 35.0% |
| ! | TCTGCTTATGGATTGTTTAC+AGG | + | chr8.4:1932056-1932075 | MS.gene042261:intron | 35.0% |
| ! | TGTAATTGTGTTCCCTTTTC+TGG | + | chr8.4:1930299-1930318 | MS.gene042261:intron | 35.0% |
| ! | TGTCTGGAATCAGTAATACT+AGG | - | chr8.4:1932288-1932307 | None:intergenic | 35.0% |
| !! | ACCTTTTTGGTGAGTGAAAA+TGG | + | chr8.4:1930905-1930924 | MS.gene042261:intron | 35.0% |
| !! | CCTTTTTGGTGAGTGAAAAT+GGG | + | chr8.4:1930906-1930925 | MS.gene042261:intron | 35.0% |
| !! | TCAATAGTATTGGTAGAACG+GGG | - | chr8.4:1931674-1931693 | None:intergenic | 35.0% |
| !! | TGTAAATGGAGCTGATTTTG+AGG | + | chr8.4:1931909-1931928 | MS.gene042261:intron | 35.0% |
| !! | TTCAGTATTTCTTCTAGGAC+TGG | - | chr8.4:1931758-1931777 | None:intergenic | 35.0% |
| !!! | ACACAGGGGTTATTTTAACT+AGG | - | chr8.4:1930682-1930701 | None:intergenic | 35.0% |
| !!! | CACAGGGGTTATTTTAACTA+GGG | - | chr8.4:1930681-1930700 | None:intergenic | 35.0% |
| !!! | CTCTGCCATAATTTTTAGCA+CGG | + | chr8.4:1930149-1930168 | MS.gene042261:intron | 35.0% |
| AATTACAGAAACACCGCATC+AGG | - | chr8.4:1930362-1930381 | None:intergenic | 40.0% | |
| AATTCCTCTGTCTTCCATGT+CGG | + | chr8.4:1930804-1930823 | MS.gene042261:intron | 40.0% | |
| AATTCGGTATGTCAACTGTC+CGG | + | chr8.4:1930220-1930239 | MS.gene042261:CDS | 40.0% | |
| ACAACGCTATTGCTACATGT+TGG | - | chr8.4:1931880-1931899 | None:intergenic | 40.0% | |
| ACTAGTATTCAAACACCACC+AGG | - | chr8.4:1931096-1931115 | None:intergenic | 40.0% | |
| AGAATAACTAGTGCCCCTAA+TGG | + | chr8.4:1931339-1931358 | MS.gene042261:intron | 40.0% | |
| AGACACAAAAGGAGGCAATA+AGG | + | chr8.4:1929205-1929224 | MS.gene042261:CDS | 40.0% | |
| AGAGCCAACGATACAATCAT+TGG | + | chr8.4:1931801-1931820 | MS.gene042261:intron | 40.0% | |
| AGCAAGCACAAACTTTGACT+AGG | - | chr8.4:1930658-1930677 | None:intergenic | 40.0% | |
| AGCCAACGATACAATCATTG+GGG | + | chr8.4:1931803-1931822 | MS.gene042261:intron | 40.0% | |
| AGGAAAAATATGACCCCTTG+TGG | + | chr8.4:1932136-1932155 | MS.gene042261:CDS | 40.0% | |
| ATAAGGTTGTTGCTACGTTG+TGG | + | chr8.4:1929222-1929241 | MS.gene042261:CDS | 40.0% | |
| ATTTCGATTGTTTAGGGACC+TGG | + | chr8.4:1931075-1931094 | MS.gene042261:intron | 40.0% | |
| CGCAAATACTTGATGTACTC+GGG | - | chr8.4:1932198-1932217 | None:intergenic | 40.0% | |
| CGTGCTAAAAATTATGGCAG+AGG | - | chr8.4:1930151-1930170 | None:intergenic | 40.0% | |
| GAGCCAACGATACAATCATT+GGG | + | chr8.4:1931802-1931821 | MS.gene042261:intron | 40.0% | |
| GAGTGAGTTGTTTGTTTGCT+TGG | - | chr8.4:1932260-1932279 | None:intergenic | 40.0% | |
| GCAAATACTTGATGTACTCG+GGG | - | chr8.4:1932197-1932216 | None:intergenic | 40.0% | |
| GCGCAAATACTTGATGTACT+CGG | - | chr8.4:1932199-1932218 | None:intergenic | 40.0% | |
| GCGCAAGTTTATCAACACAA+TGG | + | chr8.4:1932215-1932234 | MS.gene042261:CDS | 40.0% | |
| GGAAAAATATGACCCCTTGT+GGG | + | chr8.4:1932137-1932156 | MS.gene042261:CDS | 40.0% | |
| GGAAAGTTTCAAGGTTGCAA+TGG | - | chr8.4:1932176-1932195 | None:intergenic | 40.0% | |
| GGAATTTAATGAGGAGAGCA+TGG | - | chr8.4:1930790-1930809 | None:intergenic | 40.0% | |
| GGTTAAGTCAAGCTTTCATG+TGG | - | chr8.4:1930412-1930431 | None:intergenic | 40.0% | |
| TACCAGATGGGAAAACAATG+GGG | - | chr8.4:1930591-1930610 | None:intergenic | 40.0% | |
| TCCAGACATACCAAATGCTT+AGG | + | chr8.4:1932300-1932319 | MS.gene042261:CDS | 40.0% | |
| TCCTAAGCATTTGGTATGTC+TGG | - | chr8.4:1932304-1932323 | None:intergenic | 40.0% | |
| TGAAACTCCAACTGAAAAGG+GGG | + | chr8.4:1931372-1931391 | MS.gene042261:intron | 40.0% | |
| TGAGTTACTTACCTTACCTG+TGG | - | chr8.4:1929745-1929764 | None:intergenic | 40.0% | |
| TTCATAGGAGAGGTCCATTA+GGG | - | chr8.4:1931356-1931375 | None:intergenic | 40.0% | |
| TTTCATAGGAGAGGTCCATT+AGG | - | chr8.4:1931357-1931376 | None:intergenic | 40.0% | |
| TTTGTTTGCTTGGCTAGTGA+TGG | - | chr8.4:1932250-1932269 | None:intergenic | 40.0% | |
| ! | ACCCTGTAAAGGTCACATTT+TGG | + | chr8.4:1930084-1930103 | MS.gene042261:CDS | 40.0% |
| ! | CCCATTTTCACTCACCAAAA+AGG | - | chr8.4:1930909-1930928 | None:intergenic | 40.0% |
| ! | CTTCACAGTGCTATTCTTTC+AGG | + | chr8.4:1930047-1930066 | MS.gene042261:CDS | 40.0% |
| ! | GGGTAACCGCAAAACATTTT+TGG | + | chr8.4:1931700-1931719 | MS.gene042261:intron | 40.0% |
| ! | TCATGGTAATGCTGCTGATT+TGG | + | chr8.4:1929280-1929299 | MS.gene042261:CDS | 40.0% |
| !! | ACTTAGTGCCATCGATTCTT+TGG | - | chr8.4:1930738-1930757 | None:intergenic | 40.0% |
| !! | CATGGTAATGCTGCTGATTT+GGG | + | chr8.4:1929281-1929300 | MS.gene042261:CDS | 40.0% |
| !! | CTAGGGCTTTAGAAGAAGAT+AGG | - | chr8.4:1930871-1930890 | None:intergenic | 40.0% |
| !!! | AAAGTTTGCTTTTTTCCCGC+CGG | + | chr8.4:1929091-1929110 | MS.gene042261:CDS | 40.0% |
| ACTCAGATGGCTATCACAGT+TGG | - | chr8.4:1929875-1929894 | None:intergenic | 45.0% | |
| ACTTTGACTAGGAATGTGGG+TGG | - | chr8.4:1930647-1930666 | None:intergenic | 45.0% | |
| ATATGGACGTTCCACAGGTA+AGG | + | chr8.4:1929731-1929750 | MS.gene042261:CDS | 45.0% | |
| CAGTTGGAGTTTCATAGGAG+AGG | - | chr8.4:1931366-1931385 | None:intergenic | 45.0% | |
| CTCCCCAATGATTGTATCGT+TGG | - | chr8.4:1931808-1931827 | None:intergenic | 45.0% | |
| GAAACTCCAACTGAAAAGGG+GGG | + | chr8.4:1931373-1931392 | MS.gene042261:intron | 45.0% | |
| GCTGGATACGAAGTTCCAAT+CGG | - | chr8.4:1931599-1931618 | None:intergenic | 45.0% | |
| GGATTGTTTACAGGGAACAG+AGG | + | chr8.4:1932065-1932084 | MS.gene042261:intron | 45.0% | |
| GGTGAGTGAAAATGGGTACT+GGG | + | chr8.4:1930913-1930932 | MS.gene042261:intron | 45.0% | |
| TATGGTCAATCGGTTGGAAG+TGG | + | chr8.4:1929975-1929994 | MS.gene042261:CDS | 45.0% | |
| TCATAGGAGAGGTCCATTAG+GGG | - | chr8.4:1931355-1931374 | None:intergenic | 45.0% | |
| TGGTGAGTGAAAATGGGTAC+TGG | + | chr8.4:1930912-1930931 | MS.gene042261:intron | 45.0% | |
| TGTACTCGGGGAAAGTTTCA+AGG | - | chr8.4:1932185-1932204 | None:intergenic | 45.0% | |
| TTAGAAGCCAAGTGTAGCGT+CGG | - | chr8.4:1930002-1930021 | None:intergenic | 45.0% | |
| TTCTCATGGAAAGCGGTTGT+GGG | + | chr8.4:1932104-1932123 | MS.gene042261:CDS | 45.0% | |
| ! | AAGGGTCTTGTACCCTGTAA+AGG | + | chr8.4:1930073-1930092 | MS.gene042261:CDS | 45.0% |
| ! | TAGTGGATGGTCATCATGGT+GGG | + | chr8.4:1931569-1931588 | MS.gene042261:intron | 45.0% |
| ! | TATGACCCCTTGTGGGTTAA+AGG | + | chr8.4:1932144-1932163 | MS.gene042261:CDS | 45.0% |
| ! | TGTGGAAACACCCTTTTGCA+AGG | + | chr8.4:1929240-1929259 | MS.gene042261:CDS | 45.0% |
| ! | TTAGTGGATGGTCATCATGG+TGG | + | chr8.4:1931568-1931587 | MS.gene042261:intron | 45.0% |
| ! | TTGAGGCTTTTGTCCTGATG+CGG | + | chr8.4:1930346-1930365 | MS.gene042261:intron | 45.0% |
| !! | GAGCTCTAAGCTCAATGAAG+AGG | - | chr8.4:1929319-1929338 | None:intergenic | 45.0% |
| !! | GATGGGGTGTTGAAGATTTC+CGG | + | chr8.4:1929149-1929168 | MS.gene042261:CDS | 45.0% |
| !!! | TTTTTTTTTTTTTTTTGAAT+TGG | + | chr8.4:1929464-1929483 | MS.gene042261:intron | 5.0% |
| AAAGCCGACATGGAAGACAG+AGG | - | chr8.4:1930811-1930830 | None:intergenic | 50.0% | |
| ATTGGTAGAACGGGGACACA+CGG | - | chr8.4:1931666-1931685 | None:intergenic | 50.0% | |
| CCTCCACCTTTAACCCACAA+GGG | - | chr8.4:1932153-1932172 | None:intergenic | 50.0% | |
| CTCCACCTTTAACCCACAAG+GGG | - | chr8.4:1932152-1932171 | None:intergenic | 50.0% | |
| GTTCTCATGGAAAGCGGTTG+TGG | + | chr8.4:1932103-1932122 | MS.gene042261:CDS | 50.0% | |
| GTTGAAGATTTCCGGCACGA+CGG | + | chr8.4:1929157-1929176 | MS.gene042261:CDS | 50.0% | |
| TCGATTGTTTAGGGACCTGG+TGG | + | chr8.4:1931078-1931097 | MS.gene042261:intron | 50.0% | |
| TCTGGATATGGACGTTCCAC+AGG | + | chr8.4:1929726-1929745 | MS.gene042261:CDS | 50.0% | |
| ! | ATCATGGTGGGATGTCCGAT+TGG | + | chr8.4:1931581-1931600 | MS.gene042261:intron | 50.0% |
| ! | CACCCCATTGTTTTCCCATC+TGG | + | chr8.4:1930586-1930605 | MS.gene042261:intron | 50.0% |
| ! | GAGGAGAGCATGGGATCAAA+TGG | - | chr8.4:1930780-1930799 | None:intergenic | 50.0% |
| ! | GGATGGATCTAAAGCCGACA+TGG | - | chr8.4:1930821-1930840 | None:intergenic | 50.0% |
| !! | ACTTCGTATGTTGGTGGCTC+CGG | - | chr8.4:1929113-1929132 | None:intergenic | 50.0% |
| !! | GAGTGAAAATGGGTACTGGG+TGG | + | chr8.4:1930916-1930935 | MS.gene042261:intron | 50.0% |
| AAGTGGACCGACGCTACACT+TGG | + | chr8.4:1929992-1930011 | MS.gene042261:CDS | 55.0% | |
| ACTCCAACTGAAAAGGGGGG+CGG | + | chr8.4:1931376-1931395 | MS.gene042261:intron | 55.0% | |
| GCCTCCACCTTTAACCCACA+AGG | - | chr8.4:1932154-1932173 | None:intergenic | 55.0% | |
| TAATGTCACGGGAACGGTGG+CGG | + | chr8.4:1929067-1929086 | MS.gene042261:CDS | 55.0% | |
| ! | CCCTTGTGGGTTAAAGGTGG+AGG | + | chr8.4:1932150-1932169 | MS.gene042261:CDS | 55.0% |
| ! | GACCCCTTGTGGGTTAAAGG+TGG | + | chr8.4:1932147-1932166 | MS.gene042261:CDS | 55.0% |
| ! | GACGCTTTTATCCGTCGTGC+CGG | - | chr8.4:1929171-1929190 | None:intergenic | 55.0% |
| GCGGTTGTGGGAGCTCTCAA+AGG | + | chr8.4:1932116-1932135 | MS.gene042261:CDS | 60.0% | |
| GGGTAATGTCACGGGAACGG+TGG | + | chr8.4:1929064-1929083 | MS.gene042261:CDS | 60.0% | |
| ! | CATCCGCCCCCCTTTTCAGT+TGG | - | chr8.4:1931382-1931401 | None:intergenic | 60.0% |
| !! | TCGTATGTTGGTGGCTCCGG+CGG | - | chr8.4:1929110-1929129 | None:intergenic | 60.0% |
| !! | CGTATGTTGGTGGCTCCGGC+GGG | - | chr8.4:1929109-1929128 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 1929062 | 1932338 | 1929062 | ID=MS.gene042261 |
| chr8.4 | mRNA | 1929062 | 1932338 | 1929062 | ID=MS.gene042261.t1;Parent=MS.gene042261 |
| chr8.4 | exon | 1929062 | 1929360 | 1929062 | ID=MS.gene042261.t1.exon1;Parent=MS.gene042261.t1 |
| chr8.4 | CDS | 1929062 | 1929360 | 1929062 | ID=cds.MS.gene042261.t1;Parent=MS.gene042261.t1 |
| chr8.4 | exon | 1929716 | 1929752 | 1929716 | ID=MS.gene042261.t1.exon2;Parent=MS.gene042261.t1 |
| chr8.4 | CDS | 1929716 | 1929752 | 1929716 | ID=cds.MS.gene042261.t1;Parent=MS.gene042261.t1 |
| chr8.4 | exon | 1929885 | 1930121 | 1929885 | ID=MS.gene042261.t1.exon3;Parent=MS.gene042261.t1 |
| chr8.4 | CDS | 1929885 | 1930121 | 1929885 | ID=cds.MS.gene042261.t1;Parent=MS.gene042261.t1 |
| chr8.4 | exon | 1930209 | 1930256 | 1930209 | ID=MS.gene042261.t1.exon4;Parent=MS.gene042261.t1 |
| chr8.4 | CDS | 1930209 | 1930256 | 1930209 | ID=cds.MS.gene042261.t1;Parent=MS.gene042261.t1 |
| chr8.4 | exon | 1932078 | 1932338 | 1932078 | ID=MS.gene042261.t1.exon5;Parent=MS.gene042261.t1 |
| chr8.4 | CDS | 1932078 | 1932338 | 1932078 | ID=cds.MS.gene042261.t1;Parent=MS.gene042261.t1 |
| Gene Sequence |
| Protein sequence |
