Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012743.t1 | RHN65114.1 | 77.9 | 561 | 124 | 0 | 1 | 561 | 1 | 561 | 4.20E-177 | 631.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012743.t1 | Q9FWW5 | 37.2 | 333 | 191 | 5 | 5 | 323 | 11 | 339 | 1.9e-37 | 158.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012743.t1 | A0A396ILB0 | 77.9 | 561 | 124 | 0 | 1 | 561 | 1 | 561 | 3.0e-177 | 631.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene85146 | MS.gene012743 | PPI |
| MS.gene79559 | MS.gene012743 | PPI |
| MS.gene85145 | MS.gene012743 | PPI |
| MS.gene021743 | MS.gene012743 | PPI |
| MS.gene045052 | MS.gene012743 | PPI |
| MS.gene65337 | MS.gene012743 | PPI |
| MS.gene86539 | MS.gene012743 | PPI |
| MS.gene64896 | MS.gene012743 | PPI |
| MS.gene86533 | MS.gene012743 | PPI |
| MS.gene069865 | MS.gene012743 | PPI |
| MS.gene36347 | MS.gene012743 | PPI |
| MS.gene070627 | MS.gene012743 | PPI |
| MS.gene76530 | MS.gene012743 | PPI |
| MS.gene36348 | MS.gene012743 | PPI |
| MS.gene72664 | MS.gene012743 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012743.t1 | MTR_4g134110 | 95.544 | 561 | 25 | 0 | 1 | 561 | 1 | 561 | 0.0 | 998 |
| MS.gene012743.t1 | MTR_2g027130 | 59.123 | 570 | 216 | 6 | 2 | 557 | 11 | 577 | 0.0 | 554 |
| MS.gene012743.t1 | MTR_4g133450 | 94.704 | 321 | 17 | 0 | 241 | 561 | 5 | 325 | 0.0 | 538 |
| MS.gene012743.t1 | MTR_3g060660 | 45.081 | 559 | 278 | 10 | 6 | 541 | 14 | 566 | 3.34e-97 | 309 |
| MS.gene012743.t1 | MTR_3g060660 | 43.019 | 530 | 278 | 8 | 30 | 541 | 32 | 555 | 2.14e-81 | 267 |
| MS.gene012743.t1 | MTR_5g096080 | 38.801 | 567 | 310 | 10 | 6 | 543 | 15 | 573 | 7.77e-77 | 256 |
| MS.gene012743.t1 | MTR_3g007920 | 39.292 | 565 | 300 | 9 | 11 | 543 | 20 | 573 | 3.00e-75 | 251 |
| MS.gene012743.t1 | MTR_1g019490 | 26.678 | 596 | 354 | 18 | 5 | 540 | 259 | 831 | 4.46e-14 | 75.9 |
| MS.gene012743.t1 | MTR_3g101660 | 27.090 | 598 | 349 | 21 | 1 | 540 | 281 | 849 | 1.95e-13 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012743.t1 | AT1G12150 | 46.858 | 557 | 258 | 9 | 5 | 545 | 11 | 545 | 3.04e-124 | 376 |
| MS.gene012743.t1 | AT1G12150 | 46.858 | 557 | 258 | 9 | 5 | 545 | 11 | 545 | 3.04e-124 | 376 |
| MS.gene012743.t1 | AT5G55860 | 41.103 | 562 | 298 | 9 | 6 | 543 | 14 | 566 | 8.21e-79 | 261 |
| MS.gene012743.t1 | AT4G17210 | 32.496 | 557 | 309 | 9 | 7 | 543 | 17 | 526 | 2.04e-60 | 209 |
| MS.gene012743.t1 | AT2G26570 | 27.986 | 586 | 356 | 20 | 2 | 540 | 156 | 722 | 1.96e-20 | 95.9 |
| MS.gene012743.t1 | AT2G26570 | 27.986 | 586 | 356 | 20 | 2 | 540 | 156 | 722 | 1.96e-20 | 95.9 |
| MS.gene012743.t1 | AT4G33390 | 27.288 | 590 | 337 | 17 | 14 | 541 | 156 | 715 | 1.06e-12 | 71.6 |
Find 97 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCATCATATTCATTCTTTA+AGG | 0.132312 | 8.1:+695109 | None:intergenic |
| TTGTTTCCTCAACAGCTTTC+AGG | 0.144522 | 8.1:+694319 | None:intergenic |
| CAAGTTTCGCGTCTAGATTT+TGG | 0.198421 | 8.1:+695075 | None:intergenic |
| AAAGCTGCTGTTAGTTTATT+TGG | 0.205244 | 8.1:-696138 | MS.gene012743:CDS |
| GATAATCTTCATCTCTTTAA+TGG | 0.206604 | 8.1:+694536 | None:intergenic |
| AGCCTTTCTGCTCATCTCTT+TGG | 0.236137 | 8.1:+694671 | None:intergenic |
| CTCAATCTCTGCACTTGTTT+CGG | 0.295156 | 8.1:+695052 | None:intergenic |
| GGCTGAAGCTGTGAGGAATA+AGG | 0.309488 | 8.1:-695495 | MS.gene012743:CDS |
| ACCCTATCCCTAAAAGTTAT+AGG | 0.313601 | 8.1:-695455 | MS.gene012743:CDS |
| CGGCAATTGAACGTGAATTA+AGG | 0.320877 | 8.1:-694242 | MS.gene012743:CDS |
| CTGTCTCCGATTGTAGCTTC+TGG | 0.322489 | 8.1:+694712 | None:intergenic |
| CGCTTTGATTGCTGATTCCT+TGG | 0.325341 | 8.1:+695517 | None:intergenic |
| GAGAAAATACTAGCTTCTTA+AGG | 0.329746 | 8.1:+694910 | None:intergenic |
| CTGCTTCTTCAGCCGCTGCT+CGG | 0.339770 | 8.1:+694619 | None:intergenic |
| AACATCCTGCAGTGTCTTTG+TGG | 0.340359 | 8.1:+694950 | None:intergenic |
| TGCTTTAACTTTCGTGGTCT+CGG | 0.344082 | 8.1:+695610 | None:intergenic |
| CTCTCGATTTCAAAATTTAG+TGG | 0.349735 | 8.1:-694495 | MS.gene012743:CDS |
| GGCAAAGCTAGCAGCACTGC+AGG | 0.355322 | 8.1:-695309 | MS.gene012743:CDS |
| GTGCTCTATCGATGCTTTCA+TGG | 0.374865 | 8.1:+695214 | None:intergenic |
| TAACAGCAGCTTTGACAGAT+TGG | 0.377262 | 8.1:+696148 | None:intergenic |
| TTCTCTCACATTGTTCAGCT+TGG | 0.378811 | 8.1:+695541 | None:intergenic |
| GGCAAAAGCAGCAGAACAAA+AGG | 0.397186 | 8.1:-694559 | MS.gene012743:CDS |
| AGCAAGAACTCACGAAAATC+AGG | 0.398382 | 8.1:-695355 | MS.gene012743:CDS |
| AGAAAATACTAGCTTCTTAA+GGG | 0.410056 | 8.1:+694911 | None:intergenic |
| TGCTTCTTCAGCCGCTGCTC+GGG | 0.410829 | 8.1:+694620 | None:intergenic |
| CTAGCAGCACTGCAGGCAAC+AGG | 0.421103 | 8.1:-695302 | MS.gene012743:CDS |
| CAAACTCTCAAGGGTCTCCT+TGG | 0.423083 | 8.1:+695568 | None:intergenic |
| ATCGGTGAAGATGTACTATC+AGG | 0.427441 | 8.1:+694207 | None:intergenic |
| AGTGAAGGAATACCAAGAAT+TGG | 0.430131 | 8.1:-694427 | MS.gene012743:CDS |
| GCTGAAGCTGTGAGGAATAA+GGG | 0.430229 | 8.1:-695494 | MS.gene012743:CDS |
| CAAAATTTAGTGGTAAGATC+AGG | 0.437222 | 8.1:-694485 | MS.gene012743:CDS |
| TTATCTGAACAATCTGATAT+CGG | 0.442943 | 8.1:+694189 | None:intergenic |
| GGAAAGTGCTTTAACTTTCG+TGG | 0.447771 | 8.1:+695604 | None:intergenic |
| CTGCAAAATTTAACTCAGAA+AGG | 0.449552 | 8.1:-695265 | MS.gene012743:CDS |
| AAAGAAAGAGGCAGCTATCA+TGG | 0.460393 | 8.1:-694400 | MS.gene012743:CDS |
| CGAAACAAGTGCAGAGATTG+AGG | 0.462554 | 8.1:-695051 | MS.gene012743:CDS |
| TTGCTTGGAAGAATCTAGTT+CGG | 0.465635 | 8.1:+695373 | None:intergenic |
| CTGCAATGGAGACGGCTTTG+TGG | 0.473961 | 8.1:-694293 | MS.gene012743:CDS |
| GAAGAGGCGGGGCCTCAGCC+AGG | 0.487515 | 8.1:-694777 | MS.gene012743:CDS |
| ATCTCTCCAACCTCTCCCCT+TGG | 0.489793 | 8.1:+696189 | None:intergenic |
| AAAGCTTCATGCTTCCAAGA+TGG | 0.490345 | 8.1:-695009 | MS.gene012743:CDS |
| AGAGATGAGCAGAAAGGCTC+AGG | 0.494120 | 8.1:-694667 | MS.gene012743:CDS |
| GGCTTTGTGGTATGCAGAGA+TGG | 0.496437 | 8.1:-694280 | MS.gene012743:CDS |
| GCATCCACGGTACCTGGCTG+AGG | 0.500220 | 8.1:+694765 | None:intergenic |
| GATTCTCCAAGGGGAGAGGT+TGG | 0.507507 | 8.1:-696195 | MS.gene012743:CDS |
| GAAGAGTTTGAGTCACTGAA+TGG | 0.508477 | 8.1:-694453 | MS.gene012743:CDS |
| GCTTGGTTGTCAAACTCTCA+AGG | 0.509583 | 8.1:+695558 | None:intergenic |
| AAGTTTCACAGAATCCATCT+TGG | 0.515653 | 8.1:+694995 | None:intergenic |
| TTGACAGCGAATCTGTCCTT+AGG | 0.517593 | 8.1:+696102 | None:intergenic |
| ACATTGGCATCCACGGTACC+TGG | 0.522638 | 8.1:+694759 | None:intergenic |
| AAAGGAGACACAGCTTATCC+TGG | 0.526439 | 8.1:-695675 | MS.gene012743:CDS |
| TCTGCAGAACGTATTTGAAA+AGG | 0.526723 | 8.1:-695693 | MS.gene012743:intron |
| TGAGGAAACAAAGGCTGCAA+TGG | 0.535827 | 8.1:-694307 | MS.gene012743:CDS |
| TAAAATCCAGAAGCTACAAT+CGG | 0.536535 | 8.1:-694718 | MS.gene012743:CDS |
| TGGTGAAGTAGCAGTTCCTA+AGG | 0.542024 | 8.1:-696118 | MS.gene012743:CDS |
| AGCTAACCTGAAAGCTGTTG+AGG | 0.545144 | 8.1:-694325 | MS.gene012743:CDS |
| CTCCTTGGCCTTCTCAAGGT+CGG | 0.546026 | 8.1:+695583 | None:intergenic |
| AAGTTATAGGATATGAAGCT+TGG | 0.546034 | 8.1:-695442 | MS.gene012743:CDS |
| GGGTCTCCTTGGCCTTCTCA+AGG | 0.547497 | 8.1:+695579 | None:intergenic |
| GAGCAAAGATATGAGAAAGG+TGG | 0.550127 | 8.1:-696217 | None:intergenic |
| TTAGAGCAAAGATATGAGAA+AGG | 0.552619 | 8.1:-696220 | None:intergenic |
| GAAAGAGCAAGATGAGCTGA+AGG | 0.554843 | 8.1:-694862 | MS.gene012743:CDS |
| AGCTGAAGCATCCCGAGCAG+CGG | 0.556164 | 8.1:-694631 | MS.gene012743:CDS |
| AACAAAGGCTGCAATGGAGA+CGG | 0.559947 | 8.1:-694301 | MS.gene012743:CDS |
| GGTGGATTCTCCAAGGGGAG+AGG | 0.568728 | 8.1:-696199 | MS.gene012743:CDS |
| AAAAGAGCGCGGAAGAGGCG+GGG | 0.571475 | 8.1:-694788 | MS.gene012743:CDS |
| AAGAAACGAGTACACGACTA+AGG | 0.572909 | 8.1:-695399 | MS.gene012743:CDS |
| AGCCAAAGAGATGAGCAGAA+AGG | 0.575074 | 8.1:-694673 | MS.gene012743:CDS |
| GAACAATGTGAGAGAATCCA+AGG | 0.577444 | 8.1:-695534 | MS.gene012743:CDS |
| AGCACTTTCCGACCTTGAGA+AGG | 0.580366 | 8.1:-695591 | MS.gene012743:CDS |
| GTCACTGAATGGAAAAGTGA+AGG | 0.582811 | 8.1:-694442 | MS.gene012743:CDS |
| GATCTTGCTTCTAACCTCAC+TGG | 0.583636 | 8.1:-694819 | MS.gene012743:CDS |
| CTTGGTTGTCAAACTCTCAA+GGG | 0.592536 | 8.1:+695559 | None:intergenic |
| AGAATTGGCAGAAAAGAAAG+AGG | 0.594912 | 8.1:-694412 | MS.gene012743:CDS |
| GTAGAAGACATTGGCATCCA+CGG | 0.595783 | 8.1:+694752 | None:intergenic |
| TTCCGACCTTGAGAAGGCCA+AGG | 0.596478 | 8.1:-695585 | MS.gene012743:CDS |
| TGAGAAAGGTGGATTCTCCA+AGG | 0.601503 | 8.1:-696206 | MS.gene012743:CDS |
| GAAAGCTGTTGAGGAAACAA+AGG | 0.603568 | 8.1:-694316 | MS.gene012743:CDS |
| GAGAAAGGTGGATTCTCCAA+GGG | 0.604164 | 8.1:-696205 | MS.gene012743:CDS |
| GCTATCATGGCTGAGTTGCA+AGG | 0.607203 | 8.1:-694387 | MS.gene012743:CDS |
| AAATGAATTAGACATAAAGG+TGG | 0.613977 | 8.1:-694349 | MS.gene012743:CDS |
| AGAACTCACGAAAATCAGGC+AGG | 0.613981 | 8.1:-695351 | MS.gene012743:CDS |
| GATGGCAAATTCTGCAAAAG+CGG | 0.615271 | 8.1:-694262 | MS.gene012743:CDS |
| AGAAGCCACAAAGACACTGC+AGG | 0.623758 | 8.1:-694955 | MS.gene012743:CDS |
| GGGGCCTCAGCCAGGTACCG+TGG | 0.637542 | 8.1:-694769 | MS.gene012743:CDS |
| GGTTGGAGAGATTGACACAA+GGG | 0.639933 | 8.1:-696178 | MS.gene012743:CDS |
| AAATTTAACTCAGAAAGGAT+CGG | 0.640420 | 8.1:-695260 | MS.gene012743:CDS |
| ACTTTGCATGTAGAAGACAT+TGG | 0.657532 | 8.1:+694743 | None:intergenic |
| GCAGCTTTGACAGATTGGAA+TGG | 0.664413 | 8.1:+696153 | None:intergenic |
| AGTTGCAAGGAATGTACACA+AGG | 0.668978 | 8.1:-694374 | MS.gene012743:CDS |
| AGGTTGGAGAGATTGACACA+AGG | 0.675431 | 8.1:-696179 | MS.gene012743:CDS |
| AAGGATCGGTGAACTCTCAG+AGG | 0.679076 | 8.1:-695246 | MS.gene012743:CDS |
| TGTCAAGAGAAGATCGTCAG+AGG | 0.688771 | 8.1:-696085 | MS.gene012743:intron |
| TCAAAGCGGCTGAAGCTGTG+AGG | 0.688806 | 8.1:-695502 | MS.gene012743:CDS |
| AGAAAGGTGGATTCTCCAAG+GGG | 0.690833 | 8.1:-696204 | MS.gene012743:CDS |
| CGAGAGTCTACTTTGCACGT+CGG | 0.708077 | 8.1:+694512 | None:intergenic |
| CAAGGAATCAGCAATCAAAG+CGG | 0.736218 | 8.1:-695516 | MS.gene012743:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAATAATTTATACCATAT+TGG | - | chr8.1:694325-694344 | MS.gene012743:CDS | 10.0% |
| !! | TGTATAAAAAAAATCCAATA+TGG | + | chr8.1:694342-694361 | None:intergenic | 15.0% |
| !!! | TAACTTACATAATTCTTTTT+GGG | + | chr8.1:694725-694744 | None:intergenic | 15.0% |
| !!! | TTAACTTACATAATTCTTTT+TGG | + | chr8.1:694726-694745 | None:intergenic | 15.0% |
| !!! | TTTTATACATATTGTTTCAT+AGG | - | chr8.1:694353-694372 | MS.gene012743:CDS | 15.0% |
| !! | ATCATCATATTCATTCTTTA+AGG | + | chr8.1:695268-695287 | None:intergenic | 20.0% |
| !! | GAAAAATGAATTAGACATAA+AGG | - | chr8.1:696022-696041 | MS.gene012743:intron | 20.0% |
| !!! | TTCATATCCTATAACTTTTA+GGG | + | chr8.1:694929-694948 | None:intergenic | 20.0% |
| ! | AAATGAATTAGACATAAAGG+TGG | - | chr8.1:696025-696044 | MS.gene012743:intron | 25.0% |
| ! | AAATTTAACTCAGAAAGGAT+CGG | - | chr8.1:695114-695133 | MS.gene012743:CDS | 25.0% |
| ! | GATAATCTTCATCTCTTTAA+TGG | + | chr8.1:695841-695860 | None:intergenic | 25.0% |
| ! | TTATCTGAACAATCTGATAT+CGG | + | chr8.1:696188-696207 | None:intergenic | 25.0% |
| !! | AGAAAATACTAGCTTCTTAA+GGG | + | chr8.1:695466-695485 | None:intergenic | 25.0% |
| !! | ATCCTAGACATTTTAAATGT+TGG | - | chr8.1:694440-694459 | MS.gene012743:CDS | 25.0% |
| !! | CTTCATATCCTATAACTTTT+AGG | + | chr8.1:694930-694949 | None:intergenic | 25.0% |
| !! | TTCCAACATTTAAAATGTCT+AGG | + | chr8.1:694445-694464 | None:intergenic | 25.0% |
| !!! | AGTTTTGTAAAAGTCGAATT+GGG | + | chr8.1:695214-695233 | None:intergenic | 25.0% |
| AAACAAGTTTCACACTTCTT+TGG | - | chr8.1:694655-694674 | MS.gene012743:CDS | 30.0% | |
| AAGTTATAGGATATGAAGCT+TGG | - | chr8.1:694932-694951 | MS.gene012743:CDS | 30.0% | |
| CAAAATTTAGTGGTAAGATC+AGG | - | chr8.1:695889-695908 | MS.gene012743:intron | 30.0% | |
| CTCTCGATTTCAAAATTTAG+TGG | - | chr8.1:695879-695898 | MS.gene012743:intron | 30.0% | |
| CTGCAAAATTTAACTCAGAA+AGG | - | chr8.1:695109-695128 | MS.gene012743:CDS | 30.0% | |
| TAAAATCCAGAAGCTACAAT+CGG | - | chr8.1:695656-695675 | MS.gene012743:CDS | 30.0% | |
| TGACACACAAACAATACAAA+AGG | - | chr8.1:694532-694551 | MS.gene012743:CDS | 30.0% | |
| ! | AAAGCTGCTGTTAGTTTATT+TGG | - | chr8.1:694236-694255 | MS.gene012743:CDS | 30.0% |
| ! | AAGAAGTGTGAAACTTGTTT+AGG | + | chr8.1:694655-694674 | None:intergenic | 30.0% |
| ! | AGAAGCTAGTATTTTCTCTT+AGG | - | chr8.1:695469-695488 | MS.gene012743:CDS | 30.0% |
| ! | GAGAAAATACTAGCTTCTTA+AGG | + | chr8.1:695467-695486 | None:intergenic | 30.0% |
| !! | ATCCTATAACTTTTAGGGAT+AGG | + | chr8.1:694924-694943 | None:intergenic | 30.0% |
| !! | CAGTTTTGTAAAAGTCGAAT+TGG | + | chr8.1:695215-695234 | None:intergenic | 30.0% |
| !! | GAAAAAGCTAGAACTTGTTT+TGG | - | chr8.1:695779-695798 | MS.gene012743:intron | 30.0% |
| !! | TCCTATAACTTTTAGGGATA+GGG | + | chr8.1:694923-694942 | None:intergenic | 30.0% |
| !!! | TCTAGATTTTGGATTAGTTC+TGG | + | chr8.1:695291-695310 | None:intergenic | 30.0% |
| AAGTTTCACAGAATCCATCT+TGG | + | chr8.1:695382-695401 | None:intergenic | 35.0% | |
| ACCCTATCCCTAAAAGTTAT+AGG | - | chr8.1:694919-694938 | MS.gene012743:CDS | 35.0% | |
| ACTTTGCATGTAGAAGACAT+TGG | + | chr8.1:695634-695653 | None:intergenic | 35.0% | |
| AGAATTGGCAGAAAAGAAAG+AGG | - | chr8.1:695962-695981 | MS.gene012743:intron | 35.0% | |
| AGTGAAGGAATACCAAGAAT+TGG | - | chr8.1:695947-695966 | MS.gene012743:intron | 35.0% | |
| TCTGCAGAACGTATTTGAAA+AGG | - | chr8.1:694681-694700 | MS.gene012743:CDS | 35.0% | |
| TTCACACAATACCTGATGTT+AGG | - | chr8.1:694504-694523 | MS.gene012743:CDS | 35.0% | |
| TTGCTTGGAAGAATCTAGTT+CGG | + | chr8.1:695004-695023 | None:intergenic | 35.0% | |
| ! | AGAAGAAGCACAGAAAAAAC+TGG | - | chr8.1:695239-695258 | MS.gene012743:CDS | 35.0% |
| ! | CTTTCTTTTCTGCCAATTCT+TGG | + | chr8.1:695962-695981 | None:intergenic | 35.0% |
| ! | TCAGGTATTGTGTGAAACTT+TGG | + | chr8.1:694500-694519 | None:intergenic | 35.0% |
| !! | TACATAATTCTTTTTGGGCC+AGG | + | chr8.1:694720-694739 | None:intergenic | 35.0% |
| !!! | TCTTTTTCAATTCACCAGTG+AGG | + | chr8.1:695572-695591 | None:intergenic | 35.0% |
| AAAGAAAGAGGCAGCTATCA+TGG | - | chr8.1:695974-695993 | MS.gene012743:intron | 40.0% | |
| AAAGCTTCATGCTTCCAAGA+TGG | - | chr8.1:695365-695384 | MS.gene012743:CDS | 40.0% | |
| AAGAAACGAGTACACGACTA+AGG | - | chr8.1:694975-694994 | MS.gene012743:CDS | 40.0% | |
| AGCAAGAACTCACGAAAATC+AGG | - | chr8.1:695019-695038 | MS.gene012743:CDS | 40.0% | |
| AGTTGCAAGGAATGTACACA+AGG | - | chr8.1:696000-696019 | MS.gene012743:intron | 40.0% | |
| ATCGGTGAAGATGTACTATC+AGG | + | chr8.1:696170-696189 | None:intergenic | 40.0% | |
| CAAGGAATCAGCAATCAAAG+CGG | - | chr8.1:694858-694877 | MS.gene012743:CDS | 40.0% | |
| CGGCAATTGAACGTGAATTA+AGG | - | chr8.1:696132-696151 | MS.gene012743:CDS | 40.0% | |
| CTCAATCTCTGCACTTGTTT+CGG | + | chr8.1:695325-695344 | None:intergenic | 40.0% | |
| CTTGGTTGTCAAACTCTCAA+GGG | + | chr8.1:694818-694837 | None:intergenic | 40.0% | |
| GAAAGCTGTTGAGGAAACAA+AGG | - | chr8.1:696058-696077 | MS.gene012743:intron | 40.0% | |
| GAACAATGTGAGAGAATCCA+AGG | - | chr8.1:694840-694859 | MS.gene012743:CDS | 40.0% | |
| GAAGAGTTTGAGTCACTGAA+TGG | - | chr8.1:695921-695940 | MS.gene012743:intron | 40.0% | |
| GATGGCAAATTCTGCAAAAG+CGG | - | chr8.1:696112-696131 | MS.gene012743:CDS | 40.0% | |
| GTCACTGAATGGAAAAGTGA+AGG | - | chr8.1:695932-695951 | MS.gene012743:intron | 40.0% | |
| GTGTCAAATTGCCTAACATC+AGG | + | chr8.1:694518-694537 | None:intergenic | 40.0% | |
| TGGTGAATTGAAAAAGAGCG+CGG | - | chr8.1:695575-695594 | MS.gene012743:CDS | 40.0% | |
| TTCTCTCACATTGTTCAGCT+TGG | + | chr8.1:694836-694855 | None:intergenic | 40.0% | |
| TTGTTTCCTCAACAGCTTTC+AGG | + | chr8.1:696058-696077 | None:intergenic | 40.0% | |
| ! | AAAGTTTTTCCCATGACGAG+AGG | + | chr8.1:694559-694578 | None:intergenic | 40.0% |
| ! | AAGTTTTTCCCATGACGAGA+GGG | + | chr8.1:694558-694577 | None:intergenic | 40.0% |
| ! | AGAAGCACAGAAAAAACTGG+AGG | - | chr8.1:695242-695261 | MS.gene012743:CDS | 40.0% |
| ! | AGGGATAGGGTCTTTTCAAA+TGG | + | chr8.1:694910-694929 | None:intergenic | 40.0% |
| ! | CAAGTTTCGCGTCTAGATTT+TGG | + | chr8.1:695302-695321 | None:intergenic | 40.0% |
| ! | GATTTTCGTGAGTTCTTGCT+TGG | + | chr8.1:695019-695038 | None:intergenic | 40.0% |
| ! | TAACAGCAGCTTTGACAGAT+TGG | + | chr8.1:694229-694248 | None:intergenic | 40.0% |
| ! | TGCTTTAACTTTCGTGGTCT+CGG | + | chr8.1:694767-694786 | None:intergenic | 40.0% |
| ! | TTGGGTTTCATTTTGTGCAG+AGG | + | chr8.1:695196-695215 | None:intergenic | 40.0% |
| !! | GCAGGATTTTGATGCAGTTT+TGG | - | chr8.1:695041-695060 | MS.gene012743:CDS | 40.0% |
| !! | GGAAAGTGCTTTAACTTTCG+TGG | + | chr8.1:694773-694792 | None:intergenic | 40.0% |
| !! | GGATTTTGATGCAGTTTTGG+AGG | - | chr8.1:695044-695063 | MS.gene012743:CDS | 40.0% |
| !!! | GCTAGAACTTGTTTTGGAAG+AGG | - | chr8.1:695785-695804 | MS.gene012743:intron | 40.0% |
| !!! | TGTTTTGGAAGAGGCTAAAG+AGG | - | chr8.1:695794-695813 | MS.gene012743:intron | 40.0% |
| AAAGGAGACACAGCTTATCC+TGG | - | chr8.1:694699-694718 | MS.gene012743:CDS | 45.0% | |
| AACAAAGGCTGCAATGGAGA+CGG | - | chr8.1:696073-696092 | MS.gene012743:intron | 45.0% | |
| AACATCCTGCAGTGTCTTTG+TGG | + | chr8.1:695427-695446 | None:intergenic | 45.0% | |
| AGAACTCACGAAAATCAGGC+AGG | - | chr8.1:695023-695042 | MS.gene012743:CDS | 45.0% | |
| AGCCAAAGAGATGAGCAGAA+AGG | - | chr8.1:695701-695720 | MS.gene012743:intron | 45.0% | |
| AGCCTTTCTGCTCATCTCTT+TGG | + | chr8.1:695706-695725 | None:intergenic | 45.0% | |
| AGCTAACCTGAAAGCTGTTG+AGG | - | chr8.1:696049-696068 | MS.gene012743:intron | 45.0% | |
| AGGTTGGAGAGATTGACACA+AGG | - | chr8.1:694195-694214 | MS.gene012743:CDS | 45.0% | |
| CGAAACAAGTGCAGAGATTG+AGG | - | chr8.1:695323-695342 | MS.gene012743:CDS | 45.0% | |
| GAAAGAGCAAGATGAGCTGA+AGG | - | chr8.1:695512-695531 | MS.gene012743:CDS | 45.0% | |
| GATCTTGCTTCTAACCTCAC+TGG | - | chr8.1:695555-695574 | MS.gene012743:CDS | 45.0% | |
| GCTGAAGCTGTGAGGAATAA+GGG | - | chr8.1:694880-694899 | MS.gene012743:CDS | 45.0% | |
| GCTTGGTTGTCAAACTCTCA+AGG | + | chr8.1:694819-694838 | None:intergenic | 45.0% | |
| GGCAAAAGCAGCAGAACAAA+AGG | - | chr8.1:695815-695834 | MS.gene012743:intron | 45.0% | |
| GGTTGGAGAGATTGACACAA+GGG | - | chr8.1:694196-694215 | MS.gene012743:CDS | 45.0% | |
| GTAGAAGACATTGGCATCCA+CGG | + | chr8.1:695625-695644 | None:intergenic | 45.0% | |
| GTGCTCTATCGATGCTTTCA+TGG | + | chr8.1:695163-695182 | None:intergenic | 45.0% | |
| TGAGGAAACAAAGGCTGCAA+TGG | - | chr8.1:696067-696086 | MS.gene012743:intron | 45.0% | |
| TGGTGAAGTAGCAGTTCCTA+AGG | - | chr8.1:694256-694275 | MS.gene012743:CDS | 45.0% | |
| TGTCAAGAGAAGATCGTCAG+AGG | - | chr8.1:694289-694308 | MS.gene012743:CDS | 45.0% | |
| TTGACAGCGAATCTGTCCTT+AGG | + | chr8.1:694275-694294 | None:intergenic | 45.0% | |
| ! | AGAAAGGTGGATTCTCCAAG+GGG | - | chr8.1:694170-694189 | MS.gene012743:CDS | 45.0% |
| ! | ATTGAAAAAGAGCGCGGAAG+AGG | - | chr8.1:695581-695600 | MS.gene012743:CDS | 45.0% |
| ! | GAGAAAGGTGGATTCTCCAA+GGG | - | chr8.1:694169-694188 | MS.gene012743:CDS | 45.0% |
| ! | GCAGCTTTGACAGATTGGAA+TGG | + | chr8.1:694224-694243 | None:intergenic | 45.0% |
| ! | TGAGAAAGGTGGATTCTCCA+AGG | - | chr8.1:694168-694187 | MS.gene012743:CDS | 45.0% |
| !! | CGCTTTGATTGCTGATTCCT+TGG | + | chr8.1:694860-694879 | None:intergenic | 45.0% |
| AAGGATCGGTGAACTCTCAG+AGG | - | chr8.1:695128-695147 | MS.gene012743:CDS | 50.0% | |
| ACAAAAGGCCCTCTCGTCAT+GGG | - | chr8.1:694547-694566 | MS.gene012743:CDS | 50.0% | |
| AGAAGCCACAAAGACACTGC+AGG | - | chr8.1:695419-695438 | MS.gene012743:CDS | 50.0% | |
| AGAGATGAGCAGAAAGGCTC+AGG | - | chr8.1:695707-695726 | MS.gene012743:intron | 50.0% | |
| AGCACTTTCCGACCTTGAGA+AGG | - | chr8.1:694783-694802 | MS.gene012743:CDS | 50.0% | |
| CAAACTCTCAAGGGTCTCCT+TGG | + | chr8.1:694809-694828 | None:intergenic | 50.0% | |
| CGAGAGTCTACTTTGCACGT+CGG | + | chr8.1:695865-695884 | None:intergenic | 50.0% | |
| CTGTCTCCGATTGTAGCTTC+TGG | + | chr8.1:695665-695684 | None:intergenic | 50.0% | |
| GCTATCATGGCTGAGTTGCA+AGG | - | chr8.1:695987-696006 | MS.gene012743:intron | 50.0% | |
| GGCTGAAGCTGTGAGGAATA+AGG | - | chr8.1:694879-694898 | MS.gene012743:CDS | 50.0% | |
| TACAAAAGGCCCTCTCGTCA+TGG | - | chr8.1:694546-694565 | MS.gene012743:CDS | 50.0% | |
| ! | GGCTTTGTGGTATGCAGAGA+TGG | - | chr8.1:696094-696113 | MS.gene012743:CDS | 50.0% |
| ACATTGGCATCCACGGTACC+TGG | + | chr8.1:695618-695637 | None:intergenic | 55.0% | |
| ATCTCTCCAACCTCTCCCCT+TGG | + | chr8.1:694188-694207 | None:intergenic | 55.0% | |
| CTGCAATGGAGACGGCTTTG+TGG | - | chr8.1:696081-696100 | MS.gene012743:intron | 55.0% | |
| GATTCTCCAAGGGGAGAGGT+TGG | - | chr8.1:694179-694198 | MS.gene012743:CDS | 55.0% | |
| TCAAAGCGGCTGAAGCTGTG+AGG | - | chr8.1:694872-694891 | MS.gene012743:CDS | 55.0% | |
| TTCCGACCTTGAGAAGGCCA+AGG | - | chr8.1:694789-694808 | MS.gene012743:CDS | 55.0% | |
| ! | AAAAAGAGCGCGGAAGAGGC+GGG | - | chr8.1:695585-695604 | MS.gene012743:CDS | 55.0% |
| ! | CTCCTTGGCCTTCTCAAGGT+CGG | + | chr8.1:694794-694813 | None:intergenic | 55.0% |
| ! | GAAAAAGAGCGCGGAAGAGG+CGG | - | chr8.1:695584-695603 | MS.gene012743:CDS | 55.0% |
| CTAGCAGCACTGCAGGCAAC+AGG | - | chr8.1:695072-695091 | MS.gene012743:CDS | 60.0% | |
| CTGCTTCTTCAGCCGCTGCT+CGG | + | chr8.1:695758-695777 | None:intergenic | 60.0% | |
| GGCAAAGCTAGCAGCACTGC+AGG | - | chr8.1:695065-695084 | MS.gene012743:CDS | 60.0% | |
| TGCTTCTTCAGCCGCTGCTC+GGG | + | chr8.1:695757-695776 | None:intergenic | 60.0% | |
| ! | AAAAGAGCGCGGAAGAGGCG+GGG | - | chr8.1:695586-695605 | MS.gene012743:CDS | 60.0% |
| ! | AGCTGAAGCATCCCGAGCAG+CGG | - | chr8.1:695743-695762 | MS.gene012743:intron | 60.0% |
| ! | GGGTCTCCTTGGCCTTCTCA+AGG | + | chr8.1:694798-694817 | None:intergenic | 60.0% |
| ! | GGTGGATTCTCCAAGGGGAG+AGG | - | chr8.1:694175-694194 | MS.gene012743:CDS | 60.0% |
| GCATCCACGGTACCTGGCTG+AGG | + | chr8.1:695612-695631 | None:intergenic | 65.0% | |
| GAAGAGGCGGGGCCTCAGCC+AGG | - | chr8.1:695597-695616 | MS.gene012743:CDS | 75.0% | |
| ! | GGGGCCTCAGCCAGGTACCG+TGG | - | chr8.1:695605-695624 | MS.gene012743:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 694167 | 696229 | 694167 | ID=MS.gene012743 |
| chr8.1 | mRNA | 694167 | 696229 | 694167 | ID=MS.gene012743.t1;Parent=MS.gene012743 |
| chr8.1 | exon | 696086 | 696229 | 696086 | ID=MS.gene012743.t1.exon1;Parent=MS.gene012743.t1 |
| chr8.1 | CDS | 696086 | 696229 | 696086 | ID=cds.MS.gene012743.t1;Parent=MS.gene012743.t1 |
| chr8.1 | exon | 694167 | 695708 | 694167 | ID=MS.gene012743.t1.exon2;Parent=MS.gene012743.t1 |
| chr8.1 | CDS | 694167 | 695708 | 694167 | ID=cds.MS.gene012743.t1;Parent=MS.gene012743.t1 |
| Gene Sequence |
| Protein sequence |
