Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012768.t1 | XP_013458681.1 | 96.6 | 447 | 14 | 1 | 16 | 462 | 15 | 460 | 5.80E-257 | 896.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012768.t1 | Q9FIK0 | 76.8 | 431 | 86 | 4 | 38 | 459 | 13 | 438 | 5.6e-192 | 671.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012768.t1 | G7ZZU2 | 96.6 | 447 | 14 | 1 | 16 | 462 | 15 | 460 | 4.2e-257 | 896.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene012768 | MS.gene40242 | PPI |
| MS.gene014594 | MS.gene012768 | PPI |
| MS.gene030334 | MS.gene012768 | PPI |
| MS.gene012768 | MS.gene014596 | PPI |
| MS.gene012768 | MS.gene75027 | PPI |
| MS.gene012768 | MS.gene69076 | PPI |
| MS.gene40737 | MS.gene012768 | PPI |
| MS.gene66384 | MS.gene012768 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012768.t1 | MTR_4g134290 | 96.644 | 447 | 14 | 1 | 16 | 462 | 15 | 460 | 0.0 | 900 |
| MS.gene012768.t1 | MTR_3g110395 | 55.556 | 441 | 183 | 5 | 28 | 461 | 21 | 455 | 1.53e-178 | 510 |
| MS.gene012768.t1 | MTR_8g102190 | 55.329 | 441 | 183 | 6 | 28 | 460 | 20 | 454 | 1.76e-176 | 503 |
| MS.gene012768.t1 | MTR_6g090130 | 55.556 | 441 | 183 | 5 | 28 | 461 | 17 | 451 | 2.07e-175 | 501 |
| MS.gene012768.t1 | MTR_1g090300 | 54.072 | 442 | 190 | 5 | 28 | 462 | 87 | 522 | 1.09e-173 | 498 |
| MS.gene012768.t1 | MTR_2g100710 | 53.362 | 461 | 196 | 7 | 8 | 460 | 4 | 453 | 1.07e-170 | 488 |
| MS.gene012768.t1 | MTR_8g102190 | 54.722 | 360 | 149 | 6 | 28 | 379 | 20 | 373 | 2.11e-138 | 402 |
| MS.gene012768.t1 | MTR_8g102190 | 56.268 | 343 | 137 | 5 | 28 | 362 | 20 | 357 | 8.27e-137 | 399 |
| MS.gene012768.t1 | MTR_2g100710 | 54.821 | 363 | 147 | 6 | 8 | 362 | 4 | 357 | 4.10e-133 | 389 |
| MS.gene012768.t1 | MTR_8g069040 | 48.549 | 379 | 187 | 4 | 82 | 460 | 159 | 529 | 1.69e-120 | 362 |
| MS.gene012768.t1 | MTR_5g032570 | 45.646 | 379 | 198 | 4 | 82 | 460 | 163 | 533 | 9.53e-115 | 347 |
| MS.gene012768.t1 | MTR_2g100670 | 47.253 | 91 | 33 | 2 | 274 | 363 | 32 | 108 | 6.79e-17 | 82.8 |
| MS.gene012768.t1 | MTR_2g066850 | 51.351 | 74 | 35 | 1 | 172 | 245 | 389 | 461 | 3.19e-13 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012768.t1 | AT5G47810 | 75.737 | 441 | 89 | 5 | 28 | 459 | 7 | 438 | 0.0 | 678 |
| MS.gene012768.t1 | AT4G32840 | 55.682 | 440 | 179 | 6 | 28 | 460 | 21 | 451 | 8.84e-175 | 498 |
| MS.gene012768.t1 | AT4G26270 | 55.227 | 440 | 183 | 5 | 28 | 460 | 20 | 452 | 2.55e-174 | 498 |
| MS.gene012768.t1 | AT5G61580 | 54.091 | 440 | 189 | 5 | 28 | 460 | 71 | 504 | 7.28e-173 | 496 |
| MS.gene012768.t1 | AT5G56630 | 55.227 | 440 | 182 | 6 | 28 | 460 | 20 | 451 | 7.12e-172 | 492 |
| MS.gene012768.t1 | AT5G61580 | 54.091 | 440 | 188 | 6 | 28 | 460 | 71 | 503 | 5.62e-171 | 491 |
| MS.gene012768.t1 | AT4G29220 | 55.180 | 444 | 179 | 7 | 28 | 461 | 21 | 454 | 3.69e-169 | 484 |
| MS.gene012768.t1 | AT2G22480 | 47.906 | 382 | 185 | 5 | 82 | 460 | 167 | 537 | 3.78e-121 | 364 |
| MS.gene012768.t1 | AT1G12000 | 26.131 | 199 | 133 | 4 | 95 | 284 | 96 | 289 | 3.31e-12 | 68.9 |
| MS.gene012768.t1 | AT4G04040 | 27.027 | 296 | 170 | 14 | 95 | 363 | 98 | 374 | 3.47e-12 | 68.9 |
Find 113 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTGATTGAAGCCTTGATTT+TGG | 0.165329 | 8.1:-536248 | None:intergenic |
| GACCAACGACTGAAAGAAAA+TGG | 0.210119 | 8.1:+537242 | MS.gene012768:CDS |
| GAGAGCTTGTTGTTGGTCTT+TGG | 0.225491 | 8.1:+536043 | MS.gene012768:CDS |
| GGAATAATCGACAGATCTTT+TGG | 0.247415 | 8.1:+537002 | MS.gene012768:CDS |
| AGAGAAAACGAGGTCGTTTA+AGG | 0.268173 | 8.1:-535896 | None:intergenic |
| AGAGCTTGTTGTTGGTCTTT+GGG | 0.275052 | 8.1:+536044 | MS.gene012768:CDS |
| GGGTTTAGATCAAGTGGATT+TGG | 0.287362 | 8.1:-535835 | None:intergenic |
| CGTCAACAGGTGTACATTAT+AGG | 0.310047 | 8.1:+536873 | MS.gene012768:intron |
| TATGCATAATTGCCATTAAT+AGG | 0.315023 | 8.1:-537572 | None:intergenic |
| ACTCCAACATCTAAGAAAAC+TGG | 0.333926 | 8.1:-537356 | None:intergenic |
| GGATATACTGGATTTGTTGC+TGG | 0.335094 | 8.1:+537548 | MS.gene012768:CDS |
| TTTGTTGCTGGTCCTATTAA+TGG | 0.347699 | 8.1:+537560 | MS.gene012768:CDS |
| GATGTAGAAGTGTTGGAGTT+GGG | 0.350430 | 8.1:-535872 | None:intergenic |
| TTAATACAAAAGATCATAAT+TGG | 0.352372 | 8.1:+537633 | MS.gene012768:CDS |
| TGTCTAGCTCTTCAGAAAAT+CGG | 0.360046 | 8.1:-537684 | None:intergenic |
| GGTTTAGATCAAGTGGATTT+GGG | 0.366705 | 8.1:-535834 | None:intergenic |
| CTCTGCAATTCATGGTGTTA+TGG | 0.369770 | 8.1:+537523 | MS.gene012768:CDS |
| TTGGTCTTTGGGATCTCTAC+GGG | 0.382473 | 8.1:+536055 | MS.gene012768:CDS |
| CTTCAGAAAATCGGGTTGAT+TGG | 0.401398 | 8.1:-537675 | None:intergenic |
| ATGTAGAAGTGTTGGAGTTG+GGG | 0.402048 | 8.1:-535871 | None:intergenic |
| AGCTGAAGAAATGGTGGGAC+AGG | 0.403942 | 8.1:+537393 | MS.gene012768:CDS |
| AAACTGAATGTTGCAGTTGT+TGG | 0.405610 | 8.1:+536951 | MS.gene012768:CDS |
| GTTATTAGAGAGCTTGTTGT+TGG | 0.416848 | 8.1:+536036 | MS.gene012768:CDS |
| TGCCAGTGGTGAACAATACT+AGG | 0.423482 | 8.1:-536156 | None:intergenic |
| CTGTTCTTGGTATTATATCC+TGG | 0.424765 | 8.1:-537298 | None:intergenic |
| TTGGCACACTCTGCAATTCA+TGG | 0.425156 | 8.1:+537515 | MS.gene012768:CDS |
| GAGTGTACAATACAAATTAT+CGG | 0.426630 | 8.1:-537492 | None:intergenic |
| TAATTTGTATTGTACACTCT+TGG | 0.431844 | 8.1:+537496 | MS.gene012768:CDS |
| ATAATTGTGTTACATCTTCA+AGG | 0.436653 | 8.1:-535747 | None:intergenic |
| GGTGTTATGGCTGGATATAC+TGG | 0.436710 | 8.1:+537536 | MS.gene012768:CDS |
| ATTTCAAACAGCAGTTGAAA+TGG | 0.436991 | 8.1:+537025 | MS.gene012768:CDS |
| ATTTGGGAAGGTCTTGAGGT+TGG | 0.441059 | 8.1:-535818 | None:intergenic |
| CTTGTAGTTGCCGAGGGTGC+TGG | 0.445579 | 8.1:+537275 | MS.gene012768:CDS |
| CCAAAATCAAGGCTTCAATC+AGG | 0.445999 | 8.1:+536248 | MS.gene012768:CDS |
| TTCTTCTTCTACTCAACCGT+TGG | 0.453511 | 8.1:+536122 | MS.gene012768:CDS |
| GTTGGTCTTTGGGATCTCTA+CGG | 0.457538 | 8.1:+536054 | MS.gene012768:CDS |
| TATAGGCCTTGTGAAGTTGA+TGG | 0.459156 | 8.1:+537100 | MS.gene012768:CDS |
| AAGGAAGAGCGAGATGAATC+TGG | 0.459729 | 8.1:+537329 | MS.gene012768:CDS |
| GTCTAGCTCTTCAGAAAATC+GGG | 0.461245 | 8.1:-537683 | None:intergenic |
| GAGAGTGCAGTTAACGGTAT+AGG | 0.469199 | 8.1:+537083 | MS.gene012768:CDS |
| CTGAAGAACAGTACCACCTT+TGG | 0.476929 | 8.1:-536181 | None:intergenic |
| CAAAAGATCATAATTGGTCA+TGG | 0.484945 | 8.1:+537639 | MS.gene012768:CDS |
| GCAATTCATGGTGTTATGGC+TGG | 0.485776 | 8.1:+537527 | MS.gene012768:CDS |
| GAAGACGCTGTTGCGAGGAC+CGG | 0.491221 | 8.1:-535947 | None:intergenic |
| AGTTGCCGAGGGTGCTGGCC+AGG | 0.491874 | 8.1:+537280 | MS.gene012768:CDS |
| AAGTTGATGGGTCGAAGCAC+AGG | 0.498644 | 8.1:+537113 | MS.gene012768:CDS |
| TGTAGAAGTGTTGGAGTTGG+GGG | 0.499814 | 8.1:-535870 | None:intergenic |
| TAAAGTCAGAGCTGAAGAAA+TGG | 0.504227 | 8.1:+537384 | MS.gene012768:CDS |
| ACATGCGGTGGTCTCTGTCC+TGG | 0.504962 | 8.1:+536003 | MS.gene012768:CDS |
| CTCCAACATCTAAGAAAACT+GGG | 0.507207 | 8.1:-537355 | None:intergenic |
| CTAATAACGGTGTTGAGTCC+AGG | 0.509861 | 8.1:-536021 | None:intergenic |
| TTAAGGTGATGTAGAAGTGT+TGG | 0.514426 | 8.1:-535879 | None:intergenic |
| GTGTACATTATAGGTGGAGA+TGG | 0.515210 | 8.1:+536882 | MS.gene012768:CDS |
| ATAGCAGCTCTTACATCAGA+AGG | 0.525537 | 8.1:-535976 | None:intergenic |
| AATTATCGGTAGCATTTGCA+TGG | 0.527760 | 8.1:-537478 | None:intergenic |
| ACCAACGACTGAAAGAAAAT+GGG | 0.529393 | 8.1:+537243 | MS.gene012768:CDS |
| ACCAAGAACAGAGTCACAAA+AGG | 0.530216 | 8.1:+537310 | MS.gene012768:CDS |
| TAAAACAGTGGATAATGATG+TGG | 0.531127 | 8.1:+536980 | MS.gene012768:CDS |
| GTGGATTTGGGAAGGTCTTG+AGG | 0.531662 | 8.1:-535822 | None:intergenic |
| TATATCCTGGCCAGCACCCT+CGG | 0.533467 | 8.1:-537285 | None:intergenic |
| AGCAATCAGTGCTGCTCATG+TGG | 0.535740 | 8.1:+537055 | MS.gene012768:CDS |
| AACAACAAGCTCTCTAATAA+CGG | 0.535759 | 8.1:-536034 | None:intergenic |
| CGCTTCGCTTATCGCAGCGC+CGG | 0.540203 | 8.1:+535928 | MS.gene012768:CDS |
| AAGTAAGGGTTTAGATCAAG+TGG | 0.541976 | 8.1:-535841 | None:intergenic |
| ACTGTTCTTCAGACTTCTAG+AGG | 0.542115 | 8.1:+536192 | MS.gene012768:CDS |
| GAGGCCGAGAGTGCAGTTAA+CGG | 0.545631 | 8.1:+537077 | MS.gene012768:CDS |
| TGATGTAGAAGTGTTGGAGT+TGG | 0.549753 | 8.1:-535873 | None:intergenic |
| CAATTATGCATACATTCCAC+TGG | 0.555213 | 8.1:+537583 | MS.gene012768:CDS |
| GTTGATGCCATCCAAAATCA+AGG | 0.555592 | 8.1:+536237 | MS.gene012768:CDS |
| TGTTGGAATTCCTAAAACAG+TGG | 0.558287 | 8.1:+536968 | MS.gene012768:CDS |
| TAGATCAAGTGGATTTGGGA+AGG | 0.564879 | 8.1:-535830 | None:intergenic |
| TGCAGTGCTTGTAGTTGCCG+AGG | 0.566674 | 8.1:+537268 | MS.gene012768:CDS |
| ATAGGCCTTGTGAAGTTGAT+GGG | 0.567702 | 8.1:+537101 | MS.gene012768:CDS |
| AAAAGATCATAATTGGTCAT+GGG | 0.567773 | 8.1:+537640 | MS.gene012768:CDS |
| ACTGCACGAATCATGTATGT+AGG | 0.577072 | 8.1:-537455 | None:intergenic |
| ACCCTAGTATTGTTCACCAC+TGG | 0.578946 | 8.1:+536154 | MS.gene012768:CDS |
| TGGTGGGACAGGGACCATCC+TGG | 0.579487 | 8.1:+537404 | MS.gene012768:CDS |
| GTAGAAGTGTTGGAGTTGGG+GGG | 0.580821 | 8.1:-535869 | None:intergenic |
| AGTCAGAGCTGAAGAAATGG+TGG | 0.587927 | 8.1:+537387 | MS.gene012768:CDS |
| GGTATCACCGCTGGTTACAG+AGG | 0.588696 | 8.1:+536093 | MS.gene012768:CDS |
| GCAGTGCTTGTAGTTGCCGA+GGG | 0.592925 | 8.1:+537269 | MS.gene012768:CDS |
| GGTGGAGATGGGACTATGCG+AGG | 0.594506 | 8.1:+536894 | MS.gene012768:CDS |
| TCTTGAGGTTGGAGATGTAG+TGG | 0.595437 | 8.1:-535807 | None:intergenic |
| GTGGAGATGGGACTATGCGA+GGG | 0.599425 | 8.1:+536895 | MS.gene012768:CDS |
| GTTCTTCAGACTTCTAGAGG+TGG | 0.602049 | 8.1:+536195 | MS.gene012768:CDS |
| TTTACTTGGAAGGAAAAGGA+GGG | 0.603614 | 8.1:+537204 | MS.gene012768:CDS |
| GCTGAAGAAATGGTGGGACA+GGG | 0.604170 | 8.1:+537394 | MS.gene012768:CDS |
| AAAACAGTGGATAATGATGT+GGG | 0.607749 | 8.1:+536981 | MS.gene012768:CDS |
| TGTACATTATAGGTGGAGAT+GGG | 0.608105 | 8.1:+536883 | MS.gene012768:CDS |
| CACCACTGGCATACCAAAGG+TGG | 0.610272 | 8.1:+536168 | MS.gene012768:CDS |
| TTGACTGTAAATAGCTCACC+AGG | 0.616449 | 8.1:-537422 | None:intergenic |
| CAACAGGTGTACATTATAGG+TGG | 0.618654 | 8.1:+536876 | MS.gene012768:intron |
| GCCAGTGGTGAACAATACTA+GGG | 0.620862 | 8.1:-536155 | None:intergenic |
| TTGAAGAAGACGCTGTTGCG+AGG | 0.623813 | 8.1:-535952 | None:intergenic |
| AATCAGTGCTGCTCATGTGG+AGG | 0.626587 | 8.1:+537058 | MS.gene012768:CDS |
| TATACCGTTAACTGCACTCT+CGG | 0.626708 | 8.1:-537081 | None:intergenic |
| TTCGACCCATCAACTTCACA+AGG | 0.629286 | 8.1:-537106 | None:intergenic |
| CTAGGGTTGAGCTGAACCAA+CGG | 0.632100 | 8.1:-536138 | None:intergenic |
| GAGATGTAGTGGTTGAGATG+AGG | 0.632753 | 8.1:-535796 | None:intergenic |
| CTGTAAATAGCTCACCAGGA+TGG | 0.636294 | 8.1:-537418 | None:intergenic |
| GCACATGCTACATCTTCCAG+TGG | 0.639068 | 8.1:-537599 | None:intergenic |
| GCTGCTATTGTAACATGCGG+TGG | 0.641272 | 8.1:+535991 | MS.gene012768:CDS |
| GTTCACCACTGGCATACCAA+AGG | 0.645345 | 8.1:+536165 | MS.gene012768:CDS |
| GTCAGAGCTGAAGAAATGGT+GGG | 0.650633 | 8.1:+537388 | MS.gene012768:CDS |
| TAGCAGCTCTTACATCAGAA+GGG | 0.652881 | 8.1:-535975 | None:intergenic |
| TGGTCTTTGGGATCTCTACG+GGG | 0.653652 | 8.1:+536056 | MS.gene012768:CDS |
| TTAGGCAGCAATCAACGTCA+CGG | 0.665680 | 8.1:-537166 | None:intergenic |
| TACCACCTTTGGTATGCCAG+TGG | 0.676671 | 8.1:-536170 | None:intergenic |
| ATAAAAGCCTCTGTAACCAG+CGG | 0.688336 | 8.1:-536100 | None:intergenic |
| TGGAGATGGGACTATGCGAG+GGG | 0.690556 | 8.1:+536896 | MS.gene012768:CDS |
| GCTGCGATAAGCGAAGCGTG+TGG | 0.702419 | 8.1:-535923 | None:intergenic |
| GTGTGGAGTGAGAGAAAACG+AGG | 0.714528 | 8.1:-535906 | None:intergenic |
| AGAGCTGCTATTGTAACATG+CGG | 0.761108 | 8.1:+535988 | MS.gene012768:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACCAAAATATAAAATGAA+AGG | + | chr8.1:536338-536357 | MS.gene012768:intron | 15.0% |
| !! | TTAATACAAAAGATCATAAT+TGG | + | chr8.1:537633-537652 | MS.gene012768:CDS | 15.0% |
| !! | AAGATTCAAGTAAATTGTAA+TGG | - | chr8.1:536610-536629 | None:intergenic | 20.0% |
| !!! | AAGCCTTTCATTTTATATTT+TGG | - | chr8.1:536344-536363 | None:intergenic | 20.0% |
| !!! | TATGATCTTTTGTATTAACT+GGG | - | chr8.1:537631-537650 | None:intergenic | 20.0% |
| !!! | TTATGATCTTTTGTATTAAC+TGG | - | chr8.1:537632-537651 | None:intergenic | 20.0% |
| ! | AAAAGATCATAATTGGTCAT+GGG | + | chr8.1:537640-537659 | MS.gene012768:CDS | 25.0% |
| ! | ACATAATAAATAAGAGCTAC+TGG | + | chr8.1:536538-536557 | MS.gene012768:intron | 25.0% |
| ! | ATAATTGTGTTACATCTTCA+AGG | - | chr8.1:535750-535769 | None:intergenic | 25.0% |
| ! | ATAGTTAAGGTGAAAATACA+AGG | - | chr8.1:536661-536680 | None:intergenic | 25.0% |
| ! | GAGTGTACAATACAAATTAT+CGG | - | chr8.1:537495-537514 | None:intergenic | 25.0% |
| ! | TAATTTGGAAGAAACACATA+AGG | - | chr8.1:536750-536769 | None:intergenic | 25.0% |
| ! | TATGCATAATTGCCATTAAT+AGG | - | chr8.1:537575-537594 | None:intergenic | 25.0% |
| !! | ATTTAACTTTATTGCTGCAA+AGG | - | chr8.1:536481-536500 | None:intergenic | 25.0% |
| !! | GAATTTGAGATGAATAGTTA+AGG | - | chr8.1:536674-536693 | None:intergenic | 25.0% |
| !! | TAATTTGTATTGTACACTCT+TGG | + | chr8.1:537496-537515 | MS.gene012768:CDS | 25.0% |
| !! | TTTAACTTTATTGCTGCAAA+GGG | - | chr8.1:536480-536499 | None:intergenic | 25.0% |
| AAAACAGTGGATAATGATGT+GGG | + | chr8.1:536981-537000 | MS.gene012768:CDS | 30.0% | |
| AACAACAAGCTCTCTAATAA+CGG | - | chr8.1:536037-536056 | None:intergenic | 30.0% | |
| AATAAATAAGAGCTACTGGA+TGG | + | chr8.1:536542-536561 | MS.gene012768:intron | 30.0% | |
| AATTCAACAATTCTTCTGCT+TGG | + | chr8.1:536498-536517 | MS.gene012768:intron | 30.0% | |
| ATTTCAAACAGCAGTTGAAA+TGG | + | chr8.1:537025-537044 | MS.gene012768:CDS | 30.0% | |
| CAAAAGATCATAATTGGTCA+TGG | + | chr8.1:537639-537658 | MS.gene012768:CDS | 30.0% | |
| GTTATAAGATGAGCAATGAA+AGG | - | chr8.1:536417-536436 | None:intergenic | 30.0% | |
| TAAAACAGTGGATAATGATG+TGG | + | chr8.1:536980-536999 | MS.gene012768:CDS | 30.0% | |
| TTAACTTTATTGCTGCAAAG+GGG | - | chr8.1:536479-536498 | None:intergenic | 30.0% | |
| ! | AAAAATCTAGTTCAGGGATT+AGG | - | chr8.1:537187-537206 | None:intergenic | 30.0% |
| ! | ACATCATTATCCACTGTTTT+AGG | - | chr8.1:536981-537000 | None:intergenic | 30.0% |
| ! | CCAAGTAAAAATCTAGTTCA+GGG | - | chr8.1:537193-537212 | None:intergenic | 30.0% |
| ! | GAACTAGATTTTTACTTGGA+AGG | + | chr8.1:537194-537213 | MS.gene012768:CDS | 30.0% |
| ! | GATTTTTACTTGGAAGGAAA+AGG | + | chr8.1:537200-537219 | MS.gene012768:CDS | 30.0% |
| ! | TCCAAGTAAAAATCTAGTTC+AGG | - | chr8.1:537194-537213 | None:intergenic | 30.0% |
| !!! | AGGAAGATCTTTTAGCTTAA+TGG | - | chr8.1:535779-535798 | None:intergenic | 30.0% |
| !!! | GGAAGATCTTTTAGCTTAAT+GGG | - | chr8.1:535778-535797 | None:intergenic | 30.0% |
| AAACTGAATGTTGCAGTTGT+TGG | + | chr8.1:536951-536970 | MS.gene012768:CDS | 35.0% | |
| AAGTAAGGGTTTAGATCAAG+TGG | - | chr8.1:535844-535863 | None:intergenic | 35.0% | |
| AATTATCGGTAGCATTTGCA+TGG | - | chr8.1:537481-537500 | None:intergenic | 35.0% | |
| ACCAACGACTGAAAGAAAAT+GGG | + | chr8.1:537243-537262 | MS.gene012768:CDS | 35.0% | |
| ACTCCAACATCTAAGAAAAC+TGG | - | chr8.1:537359-537378 | None:intergenic | 35.0% | |
| CAATTATGCATACATTCCAC+TGG | + | chr8.1:537583-537602 | MS.gene012768:CDS | 35.0% | |
| CTCCAACATCTAAGAAAACT+GGG | - | chr8.1:537358-537377 | None:intergenic | 35.0% | |
| CTGTTCTTGGTATTATATCC+TGG | - | chr8.1:537301-537320 | None:intergenic | 35.0% | |
| GTGTTTCTTCCAAATTAAGC+TGG | + | chr8.1:536753-536772 | MS.gene012768:intron | 35.0% | |
| TAAAGTCAGAGCTGAAGAAA+TGG | + | chr8.1:537384-537403 | MS.gene012768:CDS | 35.0% | |
| TGTACATTATAGGTGGAGAT+GGG | + | chr8.1:536883-536902 | MS.gene012768:CDS | 35.0% | |
| TGTTGGAATTCCTAAAACAG+TGG | + | chr8.1:536968-536987 | MS.gene012768:CDS | 35.0% | |
| TTGGAAGAAACACATAAGGA+AGG | - | chr8.1:536746-536765 | None:intergenic | 35.0% | |
| TTTACTTGGAAGGAAAAGGA+GGG | + | chr8.1:537204-537223 | MS.gene012768:CDS | 35.0% | |
| TTTGTTGCTGGTCCTATTAA+TGG | + | chr8.1:537560-537579 | MS.gene012768:CDS | 35.0% | |
| ! | AACCCAGTTTTCTTAGATGT+TGG | + | chr8.1:537353-537372 | MS.gene012768:CDS | 35.0% |
| ! | ATTGAAGCCTTGATTTTGGA+TGG | - | chr8.1:536247-536266 | None:intergenic | 35.0% |
| ! | ATTTTCCAGCCAGCTTAATT+TGG | - | chr8.1:536765-536784 | None:intergenic | 35.0% |
| ! | CCCTGAACTAGATTTTTACT+TGG | + | chr8.1:537190-537209 | MS.gene012768:CDS | 35.0% |
| ! | GGAATAATCGACAGATCTTT+TGG | + | chr8.1:537002-537021 | MS.gene012768:CDS | 35.0% |
| ! | GGTTTAGATCAAGTGGATTT+GGG | - | chr8.1:535837-535856 | None:intergenic | 35.0% |
| ! | TTAAGGTGATGTAGAAGTGT+TGG | - | chr8.1:535882-535901 | None:intergenic | 35.0% |
| ! | TTTTACTTGGAAGGAAAAGG+AGG | + | chr8.1:537203-537222 | MS.gene012768:CDS | 35.0% |
| ! | TTTTCTTAGATGTTGGAGTG+TGG | + | chr8.1:537360-537379 | MS.gene012768:CDS | 35.0% |
| !! | GTTATTAGAGAGCTTGTTGT+TGG | + | chr8.1:536036-536055 | MS.gene012768:CDS | 35.0% |
| AAGAGCTACTGGATGGAATA+TGG | + | chr8.1:536549-536568 | MS.gene012768:intron | 40.0% | |
| ACCAAGAACAGAGTCACAAA+AGG | + | chr8.1:537310-537329 | MS.gene012768:CDS | 40.0% | |
| ACTGCACGAATCATGTATGT+AGG | - | chr8.1:537458-537477 | None:intergenic | 40.0% | |
| ACTGTTCTTCAGACTTCTAG+AGG | + | chr8.1:536192-536211 | MS.gene012768:CDS | 40.0% | |
| AGAGAAAACGAGGTCGTTTA+AGG | - | chr8.1:535899-535918 | None:intergenic | 40.0% | |
| AGAGCTGCTATTGTAACATG+CGG | + | chr8.1:535988-536007 | MS.gene012768:CDS | 40.0% | |
| ATAAAAGCCTCTGTAACCAG+CGG | - | chr8.1:536103-536122 | None:intergenic | 40.0% | |
| ATAGCAGCTCTTACATCAGA+AGG | - | chr8.1:535979-535998 | None:intergenic | 40.0% | |
| CAACAGGTGTACATTATAGG+TGG | + | chr8.1:536876-536895 | MS.gene012768:intron | 40.0% | |
| CCAAAATCAAGGCTTCAATC+AGG | + | chr8.1:536248-536267 | MS.gene012768:CDS | 40.0% | |
| CGTCAACAGGTGTACATTAT+AGG | + | chr8.1:536873-536892 | MS.gene012768:intron | 40.0% | |
| CTTGTCCTGTAAAGTTTAGC+TGG | + | chr8.1:536697-536716 | MS.gene012768:intron | 40.0% | |
| GACCAACGACTGAAAGAAAA+TGG | + | chr8.1:537242-537261 | MS.gene012768:CDS | 40.0% | |
| GGAGTGATATCTGAATTGCA+CGG | - | chr8.1:536725-536744 | None:intergenic | 40.0% | |
| GTGTACATTATAGGTGGAGA+TGG | + | chr8.1:536882-536901 | MS.gene012768:CDS | 40.0% | |
| GTTGATGCCATCCAAAATCA+AGG | + | chr8.1:536237-536256 | MS.gene012768:CDS | 40.0% | |
| TAGCAGCTCTTACATCAGAA+GGG | - | chr8.1:535978-535997 | None:intergenic | 40.0% | |
| TATACCGTTAACTGCACTCT+CGG | - | chr8.1:537084-537103 | None:intergenic | 40.0% | |
| TTCTTCCAAATTAAGCTGGC+TGG | + | chr8.1:536757-536776 | MS.gene012768:intron | 40.0% | |
| TTCTTCTTCTACTCAACCGT+TGG | + | chr8.1:536122-536141 | MS.gene012768:CDS | 40.0% | |
| TTGACTGTAAATAGCTCACC+AGG | - | chr8.1:537425-537444 | None:intergenic | 40.0% | |
| ! | ATAGGCCTTGTGAAGTTGAT+GGG | + | chr8.1:537101-537120 | MS.gene012768:CDS | 40.0% |
| ! | CCTGATTGAAGCCTTGATTT+TGG | - | chr8.1:536251-536270 | None:intergenic | 40.0% |
| ! | CTCTGCAATTCATGGTGTTA+TGG | + | chr8.1:537523-537542 | MS.gene012768:CDS | 40.0% |
| ! | GGGTTTAGATCAAGTGGATT+TGG | - | chr8.1:535838-535857 | None:intergenic | 40.0% |
| ! | TAGATCAAGTGGATTTGGGA+AGG | - | chr8.1:535833-535852 | None:intergenic | 40.0% |
| ! | TATAGGCCTTGTGAAGTTGA+TGG | + | chr8.1:537100-537119 | MS.gene012768:CDS | 40.0% |
| ! | TCCTTTTGTGACTCTGTTCT+TGG | - | chr8.1:537314-537333 | None:intergenic | 40.0% |
| !! | AGAGCTTGTTGTTGGTCTTT+GGG | + | chr8.1:536044-536063 | MS.gene012768:CDS | 40.0% |
| !! | ATGTAGAAGTGTTGGAGTTG+GGG | - | chr8.1:535874-535893 | None:intergenic | 40.0% |
| !! | CACTCGGTTGATAGATAGAT+AGG | - | chr8.1:536380-536399 | None:intergenic | 40.0% |
| !! | CGGTTGATAGATAGATAGGA+AGG | - | chr8.1:536376-536395 | None:intergenic | 40.0% |
| !! | CTTCAGAAAATCGGGTTGAT+TGG | - | chr8.1:537678-537697 | None:intergenic | 40.0% |
| !! | GATGTAGAAGTGTTGGAGTT+GGG | - | chr8.1:535875-535894 | None:intergenic | 40.0% |
| !! | GGATATACTGGATTTGTTGC+TGG | + | chr8.1:537548-537567 | MS.gene012768:CDS | 40.0% |
| !! | TGATGTAGAAGTGTTGGAGT+TGG | - | chr8.1:535876-535895 | None:intergenic | 40.0% |
| AAGGAAGAGCGAGATGAATC+TGG | + | chr8.1:537329-537348 | MS.gene012768:CDS | 45.0% | |
| ACCCTAGTATTGTTCACCAC+TGG | + | chr8.1:536154-536173 | MS.gene012768:CDS | 45.0% | |
| AGTCAGAGCTGAAGAAATGG+TGG | + | chr8.1:537387-537406 | MS.gene012768:CDS | 45.0% | |
| ATCATCCTGTTCTCGTCAAC+AGG | + | chr8.1:536860-536879 | MS.gene012768:intron | 45.0% | |
| ATTTGGGAAGGTCTTGAGGT+TGG | - | chr8.1:535821-535840 | None:intergenic | 45.0% | |
| CGGTTCCAGCTAAACTTTAC+AGG | - | chr8.1:536705-536724 | None:intergenic | 45.0% | |
| CTGAAGAACAGTACCACCTT+TGG | - | chr8.1:536184-536203 | None:intergenic | 45.0% | |
| CTGTAAATAGCTCACCAGGA+TGG | - | chr8.1:537421-537440 | None:intergenic | 45.0% | |
| GAGATGTAGTGGTTGAGATG+AGG | - | chr8.1:535799-535818 | None:intergenic | 45.0% | |
| GCCAGTGGTGAACAATACTA+GGG | - | chr8.1:536158-536177 | None:intergenic | 45.0% | |
| GCGAAACTCACAACACAAAC+TGG | + | chr8.1:536286-536305 | MS.gene012768:intron | 45.0% | |
| GGCATCAGCAAAGAATCACT+CGG | - | chr8.1:536396-536415 | None:intergenic | 45.0% | |
| GTCAGAGCTGAAGAAATGGT+GGG | + | chr8.1:537388-537407 | MS.gene012768:CDS | 45.0% | |
| TCTTGAGGTTGGAGATGTAG+TGG | - | chr8.1:535810-535829 | None:intergenic | 45.0% | |
| TGCCAGTGGTGAACAATACT+AGG | - | chr8.1:536159-536178 | None:intergenic | 45.0% | |
| TTAGGCAGCAATCAACGTCA+CGG | - | chr8.1:537169-537188 | None:intergenic | 45.0% | |
| TTCGACCCATCAACTTCACA+AGG | - | chr8.1:537109-537128 | None:intergenic | 45.0% | |
| TTGGCACACTCTGCAATTCA+TGG | + | chr8.1:537515-537534 | MS.gene012768:CDS | 45.0% | |
| ! | AGAGGCATACAGTGTTACAG+AGG | - | chr8.1:536453-536472 | None:intergenic | 45.0% |
| ! | CTAATAACGGTGTTGAGTCC+AGG | - | chr8.1:536024-536043 | None:intergenic | 45.0% |
| ! | GAGAGTGCAGTTAACGGTAT+AGG | + | chr8.1:537083-537102 | MS.gene012768:CDS | 45.0% |
| ! | GCCCATTTTCTTTCAGTCGT+TGG | - | chr8.1:537247-537266 | None:intergenic | 45.0% |
| ! | GGTGTTATGGCTGGATATAC+TGG | + | chr8.1:537536-537555 | MS.gene012768:CDS | 45.0% |
| ! | GTTCTTCAGACTTCTAGAGG+TGG | + | chr8.1:536195-536214 | MS.gene012768:CDS | 45.0% |
| ! | TACGGGGTTCGACAGATTTT+TGG | + | chr8.1:536072-536091 | MS.gene012768:CDS | 45.0% |
| !! | GAGAGCTTGTTGTTGGTCTT+TGG | + | chr8.1:536043-536062 | MS.gene012768:CDS | 45.0% |
| !! | GCAATTCATGGTGTTATGGC+TGG | + | chr8.1:537527-537546 | MS.gene012768:CDS | 45.0% |
| !! | GTTGGTCTTTGGGATCTCTA+CGG | + | chr8.1:536054-536073 | MS.gene012768:CDS | 45.0% |
| !! | TGTAGAAGTGTTGGAGTTGG+GGG | - | chr8.1:535873-535892 | None:intergenic | 45.0% |
| !! | TTGGTCTTTGGGATCTCTAC+GGG | + | chr8.1:536055-536074 | MS.gene012768:CDS | 45.0% |
| !!! | CAGATTTTTGGTATCACCGC+TGG | + | chr8.1:536084-536103 | MS.gene012768:CDS | 45.0% |
| ATTGCTGCAAAGGGGAAGAG+AGG | - | chr8.1:536471-536490 | None:intergenic | 50.0% | |
| CTAGGGTTGAGCTGAACCAA+CGG | - | chr8.1:536141-536160 | None:intergenic | 50.0% | |
| GCACATGCTACATCTTCCAG+TGG | - | chr8.1:537602-537621 | None:intergenic | 50.0% | |
| GCTGCTATTGTAACATGCGG+TGG | + | chr8.1:535991-536010 | MS.gene012768:CDS | 50.0% | |
| GGCATACAGTGTTACAGAGG+TGG | - | chr8.1:536450-536469 | None:intergenic | 50.0% | |
| GTACACCTGTTGACGAGAAC+AGG | - | chr8.1:536868-536887 | None:intergenic | 50.0% | |
| GTGGATTTGGGAAGGTCTTG+AGG | - | chr8.1:535825-535844 | None:intergenic | 50.0% | |
| GTGTGGAGTGAGAGAAAACG+AGG | - | chr8.1:535909-535928 | None:intergenic | 50.0% | |
| GTTCACCACTGGCATACCAA+AGG | + | chr8.1:536165-536184 | MS.gene012768:CDS | 50.0% | |
| TACCACCTTTGGTATGCCAG+TGG | - | chr8.1:536173-536192 | None:intergenic | 50.0% | |
| TTGAAGAAGACGCTGTTGCG+AGG | - | chr8.1:535955-535974 | None:intergenic | 50.0% | |
| ! | AATCAGTGCTGCTCATGTGG+AGG | + | chr8.1:537058-537077 | MS.gene012768:CDS | 50.0% |
| ! | AGCAATCAGTGCTGCTCATG+TGG | + | chr8.1:537055-537074 | MS.gene012768:CDS | 50.0% |
| ! | AGCTGAAGAAATGGTGGGAC+AGG | + | chr8.1:537393-537412 | MS.gene012768:CDS | 50.0% |
| ! | GCTGAAGAAATGGTGGGACA+GGG | + | chr8.1:537394-537413 | MS.gene012768:CDS | 50.0% |
| !! | AAGTTGATGGGTCGAAGCAC+AGG | + | chr8.1:537113-537132 | MS.gene012768:CDS | 50.0% |
| !! | GTAGAAGTGTTGGAGTTGGG+GGG | - | chr8.1:535872-535891 | None:intergenic | 50.0% |
| !! | TGGTCTTTGGGATCTCTACG+GGG | + | chr8.1:536056-536075 | MS.gene012768:CDS | 50.0% |
| CACCACTGGCATACCAAAGG+TGG | + | chr8.1:536168-536187 | MS.gene012768:CDS | 55.0% | |
| GCAGTGCTTGTAGTTGCCGA+GGG | + | chr8.1:537269-537288 | MS.gene012768:CDS | 55.0% | |
| GTGGAGATGGGACTATGCGA+GGG | + | chr8.1:536895-536914 | MS.gene012768:CDS | 55.0% | |
| TATATCCTGGCCAGCACCCT+CGG | - | chr8.1:537288-537307 | None:intergenic | 55.0% | |
| TGCAGTGCTTGTAGTTGCCG+AGG | + | chr8.1:537268-537287 | MS.gene012768:CDS | 55.0% | |
| TGGAGATGGGACTATGCGAG+GGG | + | chr8.1:536896-536915 | MS.gene012768:CDS | 55.0% | |
| ! | AGTTGGGGGGTGTGGAAGTA+AGG | - | chr8.1:535859-535878 | None:intergenic | 55.0% |
| ! | GAGGCCGAGAGTGCAGTTAA+CGG | + | chr8.1:537077-537096 | MS.gene012768:CDS | 55.0% |
| ! | GGTATCACCGCTGGTTACAG+AGG | + | chr8.1:536093-536112 | MS.gene012768:CDS | 55.0% |
| ! | GTTGGGGGGTGTGGAAGTAA+GGG | - | chr8.1:535858-535877 | None:intergenic | 55.0% |
| ACATGCGGTGGTCTCTGTCC+TGG | + | chr8.1:536003-536022 | MS.gene012768:CDS | 60.0% | |
| GAAGACGCTGTTGCGAGGAC+CGG | - | chr8.1:535950-535969 | None:intergenic | 60.0% | |
| GCTGCGATAAGCGAAGCGTG+TGG | - | chr8.1:535926-535945 | None:intergenic | 60.0% | |
| GGTGGAGATGGGACTATGCG+AGG | + | chr8.1:536894-536913 | MS.gene012768:CDS | 60.0% | |
| ! | AGTGTTGGAGTTGGGGGGTG+TGG | - | chr8.1:535867-535886 | None:intergenic | 60.0% |
| ! | CTTGTAGTTGCCGAGGGTGC+TGG | + | chr8.1:537275-537294 | MS.gene012768:CDS | 60.0% |
| CGCTTCGCTTATCGCAGCGC+CGG | + | chr8.1:535928-535947 | MS.gene012768:CDS | 65.0% | |
| TGGTGGGACAGGGACCATCC+TGG | + | chr8.1:537404-537423 | MS.gene012768:CDS | 65.0% | |
| !! | AGTTGCCGAGGGTGCTGGCC+AGG | + | chr8.1:537280-537299 | MS.gene012768:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 535703 | 537703 | 535703 | ID=MS.gene012768 |
| chr8.1 | mRNA | 535703 | 537703 | 535703 | ID=MS.gene012768.t1;Parent=MS.gene012768 |
| chr8.1 | exon | 535703 | 536269 | 535703 | ID=MS.gene012768.t1.exon1;Parent=MS.gene012768.t1 |
| chr8.1 | CDS | 535703 | 536269 | 535703 | ID=cds.MS.gene012768.t1;Parent=MS.gene012768.t1 |
| chr8.1 | exon | 536882 | 537703 | 536882 | ID=MS.gene012768.t1.exon2;Parent=MS.gene012768.t1 |
| chr8.1 | CDS | 536882 | 537703 | 536882 | ID=cds.MS.gene012768.t1;Parent=MS.gene012768.t1 |
| Gene Sequence |
| Protein sequence |
