Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012848.t1 | XP_013461819.1 | 98.7 | 703 | 3 | 3 | 1 | 702 | 1 | 698 | 0.00E+00 | 1345.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012848.t1 | Q9ZQB9 | 78.1 | 713 | 131 | 8 | 1 | 702 | 1 | 699 | 7.0e-313 | 1073.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012848.t1 | A0A072V1K1 | 98.7 | 703 | 3 | 3 | 1 | 702 | 1 | 698 | 0.0e+00 | 1345.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene012848 | MS.gene022823 | PPI |
| MS.gene012848 | MS.gene014716 | PPI |
| MS.gene40373 | MS.gene012848 | PPI |
| MS.gene012848 | MS.gene073023 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012848.t1 | MTR_3g103500 | 98.720 | 703 | 3 | 3 | 1 | 702 | 1 | 698 | 0.0 | 1417 |
| MS.gene012848.t1 | MTR_3g103500 | 97.782 | 496 | 6 | 2 | 1 | 496 | 1 | 491 | 0.0 | 1004 |
| MS.gene012848.t1 | MTR_3g109040 | 64.665 | 716 | 210 | 11 | 1 | 702 | 1 | 687 | 0.0 | 907 |
| MS.gene012848.t1 | MTR_3g109040 | 65.199 | 704 | 205 | 10 | 10 | 702 | 2 | 676 | 0.0 | 904 |
| MS.gene012848.t1 | MTR_4g006010 | 63.194 | 720 | 226 | 7 | 1 | 702 | 1 | 699 | 0.0 | 884 |
| MS.gene012848.t1 | MTR_6g007807 | 66.261 | 658 | 186 | 8 | 53 | 701 | 35 | 665 | 0.0 | 848 |
| MS.gene012848.t1 | MTR_8g012320 | 66.516 | 663 | 191 | 7 | 46 | 701 | 63 | 701 | 0.0 | 839 |
| MS.gene012848.t1 | MTR_1g061510 | 42.125 | 527 | 273 | 5 | 176 | 698 | 19 | 517 | 1.35e-147 | 440 |
| MS.gene012848.t1 | MTR_1g061340 | 41.176 | 527 | 278 | 5 | 176 | 698 | 19 | 517 | 1.69e-146 | 437 |
| MS.gene012848.t1 | MTR_1g061270 | 41.635 | 526 | 276 | 3 | 176 | 698 | 19 | 516 | 8.63e-146 | 436 |
| MS.gene012848.t1 | MTR_1g061280 | 40.678 | 531 | 283 | 5 | 176 | 702 | 19 | 521 | 1.28e-144 | 432 |
| MS.gene012848.t1 | MTR_7g103590 | 41.556 | 527 | 276 | 5 | 176 | 698 | 28 | 526 | 6.38e-144 | 431 |
| MS.gene012848.t1 | MTR_1g492700 | 45.513 | 468 | 226 | 4 | 232 | 698 | 85 | 524 | 6.45e-144 | 431 |
| MS.gene012848.t1 | MTR_4g055520 | 41.746 | 527 | 280 | 7 | 185 | 701 | 33 | 542 | 5.00e-139 | 419 |
| MS.gene012848.t1 | MTR_7g101950 | 40.377 | 530 | 285 | 6 | 176 | 701 | 25 | 527 | 5.21e-138 | 416 |
| MS.gene012848.t1 | MTR_4g055520 | 46.512 | 430 | 217 | 4 | 185 | 604 | 33 | 459 | 3.83e-135 | 407 |
| MS.gene012848.t1 | MTR_4g055520 | 43.304 | 448 | 239 | 4 | 255 | 701 | 29 | 462 | 3.08e-130 | 393 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012848.t1 | AT4G07960 | 77.139 | 713 | 138 | 8 | 1 | 702 | 1 | 699 | 0.0 | 1072 |
| MS.gene012848.t1 | AT4G07960 | 77.139 | 713 | 138 | 8 | 1 | 702 | 1 | 699 | 0.0 | 1072 |
| MS.gene012848.t1 | AT4G31590 | 65.546 | 714 | 212 | 8 | 1 | 702 | 1 | 692 | 0.0 | 927 |
| MS.gene012848.t1 | AT2G24630 | 63.534 | 713 | 226 | 7 | 1 | 702 | 1 | 690 | 0.0 | 905 |
| MS.gene012848.t1 | AT2G24630 | 63.534 | 713 | 226 | 7 | 1 | 702 | 1 | 690 | 0.0 | 905 |
| MS.gene012848.t1 | AT3G28180 | 64.011 | 703 | 200 | 11 | 18 | 702 | 6 | 673 | 0.0 | 862 |
| MS.gene012848.t1 | AT3G07330 | 64.253 | 663 | 198 | 7 | 51 | 702 | 48 | 682 | 0.0 | 845 |
| MS.gene012848.t1 | AT3G07330 | 64.253 | 663 | 198 | 7 | 51 | 702 | 48 | 682 | 0.0 | 845 |
| MS.gene012848.t1 | AT5G22740 | 41.431 | 531 | 279 | 5 | 176 | 701 | 29 | 532 | 4.97e-143 | 429 |
| MS.gene012848.t1 | AT5G03760 | 40.755 | 530 | 276 | 5 | 179 | 701 | 32 | 530 | 1.07e-139 | 420 |
| MS.gene012848.t1 | AT1G23480 | 40.678 | 531 | 282 | 5 | 176 | 701 | 51 | 553 | 4.41e-139 | 419 |
| MS.gene012848.t1 | AT1G23480 | 40.678 | 531 | 282 | 5 | 176 | 701 | 51 | 553 | 4.41e-139 | 419 |
| MS.gene012848.t1 | AT2G35650 | 41.199 | 517 | 269 | 5 | 176 | 688 | 51 | 536 | 3.92e-138 | 417 |
| MS.gene012848.t1 | AT5G16190 | 40.987 | 527 | 278 | 6 | 176 | 698 | 6 | 503 | 7.61e-137 | 412 |
| MS.gene012848.t1 | AT4G13410 | 44.444 | 459 | 245 | 5 | 176 | 630 | 43 | 495 | 1.60e-136 | 412 |
| MS.gene012848.t1 | AT1G23480 | 41.223 | 507 | 265 | 5 | 200 | 701 | 3 | 481 | 2.37e-135 | 407 |
| MS.gene012848.t1 | AT5G16190 | 45.638 | 447 | 238 | 4 | 176 | 618 | 6 | 451 | 8.19e-135 | 405 |
| MS.gene012848.t1 | AT5G16190 | 43.376 | 468 | 235 | 4 | 232 | 698 | 4 | 442 | 2.93e-134 | 403 |
| MS.gene012848.t1 | AT1G24070 | 38.621 | 580 | 319 | 8 | 125 | 698 | 3 | 551 | 4.41e-134 | 406 |
| MS.gene012848.t1 | AT2G35650 | 43.668 | 458 | 226 | 4 | 232 | 688 | 38 | 464 | 5.27e-134 | 404 |
| MS.gene012848.t1 | AT2G35650 | 43.668 | 458 | 226 | 4 | 232 | 688 | 38 | 464 | 5.27e-134 | 404 |
| MS.gene012848.t1 | AT3G56000 | 40.377 | 530 | 279 | 6 | 180 | 701 | 26 | 526 | 7.48e-131 | 397 |
| MS.gene012848.t1 | AT5G16190 | 38.571 | 560 | 278 | 7 | 176 | 698 | 6 | 536 | 1.16e-129 | 394 |
| MS.gene012848.t1 | AT4G16590 | 37.879 | 528 | 259 | 8 | 176 | 698 | 56 | 519 | 2.23e-117 | 362 |
| MS.gene012848.t1 | AT1G23480 | 41.205 | 415 | 216 | 2 | 288 | 701 | 21 | 408 | 2.13e-112 | 345 |
| MS.gene012848.t1 | AT4G13410 | 47.633 | 338 | 171 | 2 | 294 | 630 | 2 | 334 | 5.86e-110 | 338 |
| MS.gene012848.t1 | AT2G35650 | 41.337 | 404 | 206 | 3 | 286 | 688 | 5 | 378 | 1.92e-108 | 335 |
| MS.gene012848.t1 | AT4G13410 | 47.516 | 322 | 165 | 3 | 176 | 494 | 43 | 363 | 7.74e-99 | 310 |
| MS.gene012848.t1 | AT1G24070 | 42.373 | 413 | 219 | 6 | 125 | 532 | 3 | 401 | 2.28e-98 | 309 |
Find 151 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAATCAAAGATTGTGTAAT+TGG | 0.117866 | 3.3:+85524580 | None:intergenic |
| CAGCAGCTCTATGAGCTTTA+AGG | 0.164902 | 3.3:+85525338 | None:intergenic |
| AGTTCATCAATGTCCCAATT+TGG | 0.224089 | 3.3:+85525466 | None:intergenic |
| TATTGCAGCAGTGTGTAATT+TGG | 0.228223 | 3.3:-85524653 | MS.gene012848:CDS |
| CTGTAAGCTTCGTAAGATTC+AGG | 0.244033 | 3.3:+85523766 | None:intergenic |
| GATAGATTGGTTCTTTGTTT+AGG | 0.261285 | 3.3:-85524926 | MS.gene012848:CDS |
| CAAATTGCTCCTGCATTGTT+TGG | 0.262621 | 3.3:-85525304 | MS.gene012848:CDS |
| AAATGGCACCTTTGTTCAAT+TGG | 0.282770 | 3.3:-85525540 | MS.gene012848:CDS |
| AATTACACAATCTTTGATTA+AGG | 0.283313 | 3.3:-85524578 | MS.gene012848:CDS |
| CTTGTTGTTCCACTTCAAAA+TGG | 0.290451 | 3.3:+85524073 | None:intergenic |
| GGGCACCGACATTTGGTGTT+AGG | 0.298422 | 3.3:-85525063 | MS.gene012848:CDS |
| GTCAAACGCCGCGTCGCTTC+TGG | 0.301307 | 3.3:-85525268 | MS.gene012848:CDS |
| TTGGTTGGTCTAGACTTAAT+TGG | 0.308940 | 3.3:-85522673 | MS.gene012848:CDS |
| CATTGAACCCAAAGAAATTA+AGG | 0.311415 | 3.3:+85524037 | None:intergenic |
| TCTGAAACATCACCACCTTT+TGG | 0.311924 | 3.3:+85524866 | None:intergenic |
| CTACAGGATAATGACGAATT+AGG | 0.322967 | 3.3:-85524174 | MS.gene012848:intron |
| CTTAATTTCTTTGGGTTCAA+TGG | 0.325307 | 3.3:-85524036 | MS.gene012848:CDS |
| ACTATGAAAGGAAAAGCTTT+TGG | 0.326733 | 3.3:+85523072 | None:intergenic |
| GCTGTTCGAGCTCATCTTCA+TGG | 0.327528 | 3.3:-85523931 | MS.gene012848:CDS |
| TTTCACATAGCTACAATTCA+TGG | 0.336791 | 3.3:+85524462 | None:intergenic |
| GAGGACCACTGTGGAGGATA+TGG | 0.337343 | 3.3:-85523959 | MS.gene012848:CDS |
| GATGACCCTCGTTGATGCTT+TGG | 0.351008 | 3.3:+85522898 | None:intergenic |
| AATAGAGTGAACGAGTAAAA+TGG | 0.354129 | 3.3:+85523201 | None:intergenic |
| AATGGCACCTTTGTTCAATT+GGG | 0.361924 | 3.3:-85525539 | MS.gene012848:CDS |
| CCGACATGGTGTTCTCAAAT+AGG | 0.365826 | 3.3:+85523040 | None:intergenic |
| TTGTTTGCCTGATGTCATAA+AGG | 0.368029 | 3.3:-85523695 | MS.gene012848:CDS |
| TCTTTCATTTCTTCCAGATC+AGG | 0.374102 | 3.3:+85522871 | None:intergenic |
| TATTCAGAGTATAGATAGAT+TGG | 0.375619 | 3.3:-85524939 | MS.gene012848:CDS |
| TTTGGGTTCAATGGTACTGC+TGG | 0.378978 | 3.3:-85524027 | MS.gene012848:CDS |
| CAGCAGCATAGATGGCATTC+TGG | 0.380899 | 3.3:-85523739 | MS.gene012848:CDS |
| GATGTTTCAGATCTTGAATC+TGG | 0.386991 | 3.3:-85524854 | MS.gene012848:CDS |
| GATCTTGAATCTGGAGATAA+GGG | 0.389985 | 3.3:-85524845 | MS.gene012848:CDS |
| TTAAGGAGGAGGTTCATAAA+TGG | 0.393056 | 3.3:-85524561 | MS.gene012848:CDS |
| GTATTTGAAGGAACTTGCTT+TGG | 0.396618 | 3.3:-85522788 | MS.gene012848:CDS |
| AAGAAATGAAAGAGGAAATC+AGG | 0.399107 | 3.3:-85522861 | MS.gene012848:CDS |
| TCAATGGTACTGCTGGAGTT+TGG | 0.399721 | 3.3:-85524020 | MS.gene012848:CDS |
| AGGGTCATCAGCACCTGATC+TGG | 0.403205 | 3.3:-85522884 | MS.gene012848:CDS |
| ACCTTGGCCTTTATGACATC+AGG | 0.403380 | 3.3:+85523688 | None:intergenic |
| ACAGAAAACAGCAGCATAGA+TGG | 0.412430 | 3.3:-85523747 | MS.gene012848:CDS |
| TGCTCCACATCTTGAATTGT+GGG | 0.424265 | 3.3:-85525083 | MS.gene012848:CDS |
| GAATTGTGGGCACCGACATT+TGG | 0.427447 | 3.3:-85525070 | MS.gene012848:CDS |
| TGCTGGAGTTTGGAGAATAA+AGG | 0.431597 | 3.3:-85524010 | MS.gene012848:CDS |
| ACGCACTTCCTAGCTGGAAT+AGG | 0.438031 | 3.3:+85522989 | None:intergenic |
| TAATCAAAGATTGTGTAATT+GGG | 0.439751 | 3.3:+85524581 | None:intergenic |
| AGATAAGGGTTTCTTCCCTA+TGG | 0.441243 | 3.3:-85524831 | MS.gene012848:CDS |
| AGATCTTGAATCTGGAGATA+AGG | 0.445844 | 3.3:-85524846 | MS.gene012848:CDS |
| CTTTCTTGCAGATAAGCATA+TGG | 0.446258 | 3.3:-85523275 | MS.gene012848:intron |
| CAAGGTGTTTCTATGTTTGT+CGG | 0.458917 | 3.3:-85525158 | MS.gene012848:CDS |
| AGTTTGGAGAATAAAGGCTT+TGG | 0.460085 | 3.3:-85524004 | MS.gene012848:CDS |
| AAATTCAATGCTATGATCTC+AGG | 0.461079 | 3.3:-85523012 | MS.gene012848:CDS |
| CTTAAAGCTCATAGAGCTGC+TGG | 0.464353 | 3.3:-85525337 | MS.gene012848:CDS |
| TCTTCAAGAGACAAAGGAAA+AGG | 0.476352 | 3.3:-85525394 | MS.gene012848:CDS |
| GGCACCGACATTTGGTGTTA+GGG | 0.481814 | 3.3:-85525062 | MS.gene012848:CDS |
| ATTCGTACGCACTTCCTAGC+TGG | 0.482898 | 3.3:+85522983 | None:intergenic |
| TGGGACATTGATGAACTTGA+AGG | 0.483005 | 3.3:-85525460 | MS.gene012848:CDS |
| AACAACCCACGCAGGAATCT+CGG | 0.484233 | 3.3:+85523140 | None:intergenic |
| ACAATCTTTGATTAAGGAGG+AGG | 0.486658 | 3.3:-85524572 | MS.gene012848:CDS |
| GTGCTCCACATCTTGAATTG+TGG | 0.487800 | 3.3:-85525084 | MS.gene012848:CDS |
| AGCTAGGAAGTGCGTACGAA+TGG | 0.488925 | 3.3:-85522981 | MS.gene012848:CDS |
| AGAAGCGACGCGGCGTTTGA+CGG | 0.489772 | 3.3:+85525270 | None:intergenic |
| AAAATTAAACCTGTTCCAAA+AGG | 0.496075 | 3.3:-85524881 | MS.gene012848:CDS |
| TTCTACTTCTTGCTATTCCA+AGG | 0.497931 | 3.3:-85522709 | MS.gene012848:CDS |
| CGGTGGTGTTGGTGGTGGTA+GGG | 0.498109 | 3.3:-85525224 | MS.gene012848:CDS |
| ATCAGGGGTAGGCTGAAAAT+CGG | 0.498763 | 3.3:+85524411 | None:intergenic |
| TAAGAAGTCCGGTCGTTCAT+CGG | 0.499552 | 3.3:-85522950 | MS.gene012848:CDS |
| TTTAGTAGTACCTTAAAATG+AGG | 0.500382 | 3.3:+85524370 | None:intergenic |
| TAGGACTTGTGCAAGCTAGA+TGG | 0.503401 | 3.3:-85524155 | MS.gene012848:CDS |
| CCCCATGTGCAATGAGAAAG+AGG | 0.505230 | 3.3:-85524795 | MS.gene012848:intron |
| CACGCAGGAATCTCGGCCTC+CGG | 0.505996 | 3.3:+85523147 | None:intergenic |
| ATTAGAGATGGGTACAAAGC+TGG | 0.509776 | 3.3:-85524499 | MS.gene012848:CDS |
| ATCGACGGTGGTGTTGGTGG+TGG | 0.510363 | 3.3:-85525229 | MS.gene012848:CDS |
| AAAAGTAAATCTTCTTCTGA+AGG | 0.511562 | 3.3:+85525436 | None:intergenic |
| ACATAACAAAATGTATTTGA+AGG | 0.516862 | 3.3:-85522800 | MS.gene012848:CDS |
| GCGGATATCGACGGTGGTGT+TGG | 0.521978 | 3.3:-85525235 | MS.gene012848:CDS |
| TTGAGAAATGACATGACTGC+TGG | 0.523060 | 3.3:+85523108 | None:intergenic |
| ATCACCCTCCGATGAACGAC+CGG | 0.523064 | 3.3:+85522942 | None:intergenic |
| ACGGTGGTGTTGGTGGTGGT+AGG | 0.524657 | 3.3:-85525225 | MS.gene012848:CDS |
| CAGCAGTGTGTAATTTGGAT+TGG | 0.524727 | 3.3:-85524648 | MS.gene012848:CDS |
| GGGATCTGAACAAGAACCAT+AGG | 0.528282 | 3.3:+85524815 | None:intergenic |
| GCAACACCAACTTTCTAAGA+AGG | 0.529828 | 3.3:+85523223 | None:intergenic |
| CCTCTTTCTCATTGCACATG+GGG | 0.530589 | 3.3:+85524795 | None:intergenic |
| CGACACCGTGTGATTAGAGA+TGG | 0.531408 | 3.3:-85524511 | MS.gene012848:CDS |
| ACCTCTTTCTCATTGCACAT+GGG | 0.534788 | 3.3:+85524794 | None:intergenic |
| TTCGAGCTCATCTTCATGGA+TGG | 0.538595 | 3.3:-85523927 | MS.gene012848:CDS |
| CAAAGGCGAAACAATTGCAT+TGG | 0.541740 | 3.3:+85523715 | None:intergenic |
| AGAACCCTACAGTGAAAAGT+AGG | 0.543807 | 3.3:-85525195 | MS.gene012848:CDS |
| AGGAGATACGGTACTATGAA+AGG | 0.544564 | 3.3:+85523060 | None:intergenic |
| AAGCTGGTGGTTGGTTGGAG+AGG | 0.544703 | 3.3:-85523978 | MS.gene012848:CDS |
| TACACAATCTTTGATTAAGG+AGG | 0.545280 | 3.3:-85524575 | MS.gene012848:CDS |
| AGGAGTCTACTTTCAGCTCA+AGG | 0.545457 | 3.3:-85522739 | MS.gene012848:CDS |
| GCTAGGAAGTGCGTACGAAT+GGG | 0.547002 | 3.3:-85522980 | MS.gene012848:CDS |
| TACCTCTTTCTCATTGCACA+TGG | 0.547325 | 3.3:+85524793 | None:intergenic |
| GATATCGACGGTGGTGTTGG+TGG | 0.547514 | 3.3:-85525232 | MS.gene012848:CDS |
| ATGGCACCTTTGTTCAATTG+GGG | 0.552161 | 3.3:-85525538 | MS.gene012848:CDS |
| GTTCATAAATGGCAAGAAGA+AGG | 0.553785 | 3.3:-85524550 | MS.gene012848:CDS |
| ATAAAGGCTTTGGAAGAAGC+TGG | 0.554855 | 3.3:-85523994 | MS.gene012848:CDS |
| TGGGTAGTCACTAAGAAGTC+CGG | 0.559717 | 3.3:-85522961 | MS.gene012848:CDS |
| TGATCTGGAAGAAATGAAAG+AGG | 0.560195 | 3.3:-85522869 | MS.gene012848:CDS |
| GGAAGAAGCTGGTGGTTGGT+TGG | 0.560517 | 3.3:-85523983 | MS.gene012848:CDS |
| GTGTTCTCAAATAGGAGATA+CGG | 0.560798 | 3.3:+85523048 | None:intergenic |
| TTCTTAAGGAAATCAGGGGT+AGG | 0.562002 | 3.3:+85524400 | None:intergenic |
| CTTTGGAAGAAGCTGGTGGT+TGG | 0.566030 | 3.3:-85523987 | MS.gene012848:CDS |
| GAAGTCCGGTCGTTCATCGG+AGG | 0.568647 | 3.3:-85522947 | MS.gene012848:CDS |
| GCCTGATGTCATAAAGGCCA+AGG | 0.569837 | 3.3:-85523689 | MS.gene012848:intron |
| ATTAAACCTGTTCCAAAAGG+TGG | 0.570493 | 3.3:-85524878 | MS.gene012848:CDS |
| TCCCATGACAATGTTCGTAC+CGG | 0.571170 | 3.3:-85523166 | MS.gene012848:CDS |
| GGAGTCTACTTTCAGCTCAA+GGG | 0.571457 | 3.3:-85522738 | MS.gene012848:CDS |
| AAAACGCTAAACAACTCACA+TGG | 0.573149 | 3.3:-85525369 | MS.gene012848:CDS |
| CTCCGGTACGAACATTGTCA+TGG | 0.573525 | 3.3:+85523164 | None:intergenic |
| AATTCTTCTTCAAGAGACAA+AGG | 0.578590 | 3.3:-85525400 | MS.gene012848:CDS |
| GGAGGCCGAGATTCCTGCGT+GGG | 0.590482 | 3.3:-85523145 | MS.gene012848:CDS |
| GAAACTAAACCAAACAATGC+AGG | 0.595411 | 3.3:+85525295 | None:intergenic |
| TTTGTGAGAAATTGCAAAGG+AGG | 0.595685 | 3.3:+85524983 | None:intergenic |
| AAGTCCGGTCGTTCATCGGA+GGG | 0.596120 | 3.3:-85522946 | MS.gene012848:CDS |
| TAGGTTCTATACATTCATCA+AGG | 0.599235 | 3.3:-85525176 | MS.gene012848:CDS |
| TCCGGTACGAACATTGTCAT+GGG | 0.602923 | 3.3:+85523165 | None:intergenic |
| TTCGCACCCCAATTGAACAA+AGG | 0.603697 | 3.3:+85525532 | None:intergenic |
| AGAGGAAATCAGGAGACAAG+AGG | 0.607350 | 3.3:-85522851 | MS.gene012848:CDS |
| ACGGTGTCGGTACAAAATGT+TGG | 0.614765 | 3.3:+85524525 | None:intergenic |
| GGTGCCCACAATTCAAGATG+TGG | 0.618003 | 3.3:+85525079 | None:intergenic |
| CATGACAATGTTCGTACCGG+AGG | 0.621883 | 3.3:-85523163 | MS.gene012848:CDS |
| ATCTCAGGCCTATTCCAGCT+AGG | 0.627956 | 3.3:-85522997 | MS.gene012848:CDS |
| AGCGACGCGGCGTTTGACGG+CGG | 0.631539 | 3.3:+85525273 | None:intergenic |
| AAGATTCAGGTAACTCACAT+TGG | 0.636142 | 3.3:+85523779 | None:intergenic |
| GGATCTGAACAAGAACCATA+GGG | 0.636957 | 3.3:+85524816 | None:intergenic |
| TGAGAAATGACATGACTGCT+GGG | 0.640975 | 3.3:+85523109 | None:intergenic |
| GCAGTACCTCCACATCATTG+AGG | 0.643002 | 3.3:+85523893 | None:intergenic |
| TTATGACATCAGGCAAACAA+AGG | 0.646531 | 3.3:+85523698 | None:intergenic |
| AGAACCGACGCGGATATCGA+CGG | 0.646947 | 3.3:-85525244 | MS.gene012848:CDS |
| AGGATGAGAATCTTCTAACA+AGG | 0.648818 | 3.3:-85524119 | MS.gene012848:CDS |
| CGGTTCTACCAGAAGCGACG+CGG | 0.649354 | 3.3:+85525260 | None:intergenic |
| CCTATTTGAGAACACCATGT+CGG | 0.660812 | 3.3:-85523040 | MS.gene012848:CDS |
| GACACCGTGTGATTAGAGAT+GGG | 0.666771 | 3.3:-85524510 | MS.gene012848:CDS |
| CGCTTCTGGTAGAACCGACG+CGG | 0.667172 | 3.3:-85525254 | MS.gene012848:CDS |
| GCATTTGTGAGAAATTGCAA+AGG | 0.670287 | 3.3:+85524980 | None:intergenic |
| GTTGGAGAGGACCACTGTGG+AGG | 0.676327 | 3.3:-85523965 | MS.gene012848:CDS |
| CATCTCTAATCACACGGTGT+CGG | 0.680410 | 3.3:+85524512 | None:intergenic |
| TGTACCCATCTCTAATCACA+CGG | 0.680975 | 3.3:+85524506 | None:intergenic |
| ACATCCCTAACACCAAATGT+CGG | 0.680982 | 3.3:+85525058 | None:intergenic |
| AAACGCTAAACAACTCACAT+GGG | 0.684108 | 3.3:-85525368 | MS.gene012848:CDS |
| ACCACCGTCGATATCCGCGT+CGG | 0.706571 | 3.3:+85525240 | None:intergenic |
| AAGGCTTTGGAAGAAGCTGG+TGG | 0.707444 | 3.3:-85523991 | MS.gene012848:CDS |
| ATATAACAAACAACCCACGC+AGG | 0.712609 | 3.3:+85523132 | None:intergenic |
| CGGAGGCCGAGATTCCTGCG+TGG | 0.712962 | 3.3:-85523146 | MS.gene012848:CDS |
| AGAAACCAAAGCATCAACGA+GGG | 0.719081 | 3.3:-85522903 | MS.gene012848:CDS |
| GGTGCGAAAGAAAGTCACAA+AGG | 0.727517 | 3.3:-85525517 | MS.gene012848:CDS |
| AAGTCACAAAGGAACACCAG+TGG | 0.729436 | 3.3:-85525506 | MS.gene012848:CDS |
| GAGAAACCAAAGCATCAACG+AGG | 0.730620 | 3.3:-85522904 | MS.gene012848:CDS |
| TTGGTTGGAGAGGACCACTG+TGG | 0.738638 | 3.3:-85523968 | MS.gene012848:CDS |
| ACCGACGCGGATATCGACGG+TGG | 0.749510 | 3.3:-85525241 | MS.gene012848:CDS |
| AATGTCCATATCCTCCACAG+TGG | 0.778249 | 3.3:+85523954 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAATATTTGATTGGATT+TGG | - | chr3.3:85523980-85523999 | MS.gene012848:CDS | 15.0% |
| !! | ATTGAAATTACCAAAAAAAA+AGG | - | chr3.3:85524632-85524651 | MS.gene012848:CDS | 15.0% |
| !!! | AATTGATTGATGATTAATTT+AGG | - | chr3.3:85523846-85523865 | MS.gene012848:intron | 15.0% |
| !!! | TTTTGTTGTTATGTTTTTTA+AGG | - | chr3.3:85523506-85523525 | MS.gene012848:intron | 15.0% |
| !! | AAACAAAATTTCCATGAAAA+GGG | + | chr3.3:85524555-85524574 | None:intergenic | 20.0% |
| !! | AATTACACAATCTTTGATTA+AGG | - | chr3.3:85523617-85523636 | MS.gene012848:intron | 20.0% |
| !! | ACATAACAAAATGTATTTGA+AGG | - | chr3.3:85525395-85525414 | MS.gene012848:CDS | 20.0% |
| !! | AGATAAACAAAACAAACATT+TGG | + | chr3.3:85524352-85524371 | None:intergenic | 20.0% |
| !! | TAATCAAAGATTGTGTAATT+GGG | + | chr3.3:85523617-85523636 | None:intergenic | 20.0% |
| !! | TTAATCAAAGATTGTGTAAT+TGG | + | chr3.3:85523618-85523637 | None:intergenic | 20.0% |
| !!! | AATGTTTGTTTTGTTTATCT+TGG | - | chr3.3:85524352-85524371 | MS.gene012848:intron | 20.0% |
| !!! | GTGTTTTGTTAGTAATTTTA+CGG | + | chr3.3:85524771-85524790 | None:intergenic | 20.0% |
| !!! | TGAATCAAAAAATTGGATTT+TGG | + | chr3.3:85523573-85523592 | None:intergenic | 20.0% |
| !!! | TTTATGTATGCCTTTTTTTT+TGG | + | chr3.3:85524645-85524664 | None:intergenic | 20.0% |
| ! | AAAAATGGAGAATCCAAATT+GGG | - | chr3.3:85522716-85522735 | MS.gene012848:CDS | 25.0% |
| ! | AAAAGTAAATCTTCTTCTGA+AGG | + | chr3.3:85522762-85522781 | None:intergenic | 25.0% |
| ! | AAAATTAAACCTGTTCCAAA+AGG | - | chr3.3:85523314-85523333 | MS.gene012848:intron | 25.0% |
| ! | CAAACAAAATTTCCATGAAA+AGG | + | chr3.3:85524556-85524575 | None:intergenic | 25.0% |
| ! | CAGAACTTGAATCAAAAAAT+TGG | + | chr3.3:85523580-85523599 | None:intergenic | 25.0% |
| ! | TAAAAATGGAGAATCCAAAT+TGG | - | chr3.3:85522715-85522734 | MS.gene012848:CDS | 25.0% |
| ! | TATTCAGAGTATAGATAGAT+TGG | - | chr3.3:85523256-85523275 | MS.gene012848:CDS | 25.0% |
| ! | TGTTTCTTTAATCTAGACTA+CGG | - | chr3.3:85524801-85524820 | MS.gene012848:CDS | 25.0% |
| ! | TTTAGTAGTACCTTAAAATG+AGG | + | chr3.3:85523828-85523847 | None:intergenic | 25.0% |
| !! | AGTGTTTTCCTTAATTTCTT+TGG | - | chr3.3:85524150-85524169 | MS.gene012848:CDS | 25.0% |
| !! | GTGTTTTCCTTAATTTCTTT+GGG | - | chr3.3:85524151-85524170 | MS.gene012848:CDS | 25.0% |
| !!! | CAATTTTTTGATTCAAGTTC+TGG | - | chr3.3:85523578-85523597 | MS.gene012848:intron | 25.0% |
| !!! | TCTCTTGAAGAAGAATTTTT+TGG | + | chr3.3:85522792-85522811 | None:intergenic | 25.0% |
| !!! | TTCTTTGTTTAGGATGTTTT+TGG | - | chr3.3:85523279-85523298 | MS.gene012848:intron | 25.0% |
| !!! | TTGTTGCTTATTTTAAAGGT+TGG | - | chr3.3:85523081-85523100 | MS.gene012848:CDS | 25.0% |
| !!! | TTTTGTTTGAGACATCATTT+TGG | - | chr3.3:85524567-85524586 | MS.gene012848:CDS | 25.0% |
| AAATTCAATGCTATGATCTC+AGG | - | chr3.3:85525183-85525202 | MS.gene012848:CDS | 30.0% | |
| AAGAAATGAAAGAGGAAATC+AGG | - | chr3.3:85525334-85525353 | MS.gene012848:CDS | 30.0% | |
| AATAGAGTGAACGAGTAAAA+TGG | + | chr3.3:85524997-85525016 | None:intergenic | 30.0% | |
| AATTCTTCTTCAAGAGACAA+AGG | - | chr3.3:85522795-85522814 | MS.gene012848:CDS | 30.0% | |
| CATTGAACCCAAAGAAATTA+AGG | + | chr3.3:85524161-85524180 | None:intergenic | 30.0% | |
| TACACAATCTTTGATTAAGG+AGG | - | chr3.3:85523620-85523639 | MS.gene012848:intron | 30.0% | |
| TAGGTTCTATACATTCATCA+AGG | - | chr3.3:85523019-85523038 | MS.gene012848:CDS | 30.0% | |
| TATGTGTATCTCAATTCTCA+AGG | - | chr3.3:85524529-85524548 | MS.gene012848:CDS | 30.0% | |
| TGGTAATTTCAATGCATTCA+GGG | + | chr3.3:85524625-85524644 | None:intergenic | 30.0% | |
| TGTTACAGTTGTGCTTATTA+TGG | - | chr3.3:85524878-85524897 | MS.gene012848:CDS | 30.0% | |
| TTTCACATAGCTACAATTCA+TGG | + | chr3.3:85523736-85523755 | None:intergenic | 30.0% | |
| ! | AATGAGGAACAGTTTTCTTA+AGG | + | chr3.3:85523812-85523831 | None:intergenic | 30.0% |
| ! | ACAGTTTTCTTAAGGAAATC+AGG | + | chr3.3:85523804-85523823 | None:intergenic | 30.0% |
| ! | ACTATGAAAGGAAAAGCTTT+TGG | + | chr3.3:85525126-85525145 | None:intergenic | 30.0% |
| ! | AGTTTTCTTAAGGAAATCAG+GGG | + | chr3.3:85523802-85523821 | None:intergenic | 30.0% |
| ! | ATTCATTTTCCTCAATGATG+TGG | - | chr3.3:85524293-85524312 | MS.gene012848:intron | 30.0% |
| ! | ATTGAATTTTGTAACCGACA+TGG | + | chr3.3:85525172-85525191 | None:intergenic | 30.0% |
| ! | CAGTTTTCTTAAGGAAATCA+GGG | + | chr3.3:85523803-85523822 | None:intergenic | 30.0% |
| ! | CTTAATTTCTTTGGGTTCAA+TGG | - | chr3.3:85524159-85524178 | MS.gene012848:CDS | 30.0% |
| ! | CTTTTTCCTTCTTAGAAAGT+TGG | - | chr3.3:85524966-85524985 | MS.gene012848:CDS | 30.0% |
| ! | GAAAACTGTTCCTCATTTTA+AGG | - | chr3.3:85523815-85523834 | MS.gene012848:intron | 30.0% |
| ! | GATAGATTGGTTCTTTGTTT+AGG | - | chr3.3:85523269-85523288 | MS.gene012848:intron | 30.0% |
| ! | GTTGTGCTTATTATGGATTA+TGG | - | chr3.3:85524885-85524904 | MS.gene012848:CDS | 30.0% |
| ! | TTGGTAATTTCAATGCATTC+AGG | + | chr3.3:85524626-85524645 | None:intergenic | 30.0% |
| !!! | GAGGTTGTTGCTTATTTTAA+AGG | - | chr3.3:85523077-85523096 | MS.gene012848:CDS | 30.0% |
| !!! | TGATTGGTTTTATGCTAGAT+GGG | - | chr3.3:85523163-85523182 | MS.gene012848:CDS | 30.0% |
| !!! | TTGATTGGTTTTATGCTAGA+TGG | - | chr3.3:85523162-85523181 | MS.gene012848:CDS | 30.0% |
| AAAACGCTAAACAACTCACA+TGG | - | chr3.3:85522826-85522845 | MS.gene012848:CDS | 35.0% | |
| AAACGCTAAACAACTCACAT+GGG | - | chr3.3:85522827-85522846 | MS.gene012848:CDS | 35.0% | |
| AAATGTGTGAGACGTTGTTA+CGG | - | chr3.3:85524595-85524614 | MS.gene012848:CDS | 35.0% | |
| AACACCAGTGGTTGTAAAAA+TGG | - | chr3.3:85522701-85522720 | MS.gene012848:CDS | 35.0% | |
| AAGATTCAGGTAACTCACAT+TGG | + | chr3.3:85524419-85524438 | None:intergenic | 35.0% | |
| ACAATCTTTGATTAAGGAGG+AGG | - | chr3.3:85523623-85523642 | MS.gene012848:intron | 35.0% | |
| AGATCTTGAATCTGGAGATA+AGG | - | chr3.3:85523349-85523368 | MS.gene012848:intron | 35.0% | |
| AGGATGAGAATCTTCTAACA+AGG | - | chr3.3:85524076-85524095 | MS.gene012848:CDS | 35.0% | |
| AGTTCATCAATGTCCCAATT+TGG | + | chr3.3:85522732-85522751 | None:intergenic | 35.0% | |
| AGTTTGGAGAATAAAGGCTT+TGG | - | chr3.3:85524191-85524210 | MS.gene012848:intron | 35.0% | |
| ATTAAACCTGTTCCAAAAGG+TGG | - | chr3.3:85523317-85523336 | MS.gene012848:intron | 35.0% | |
| CACTGGAAACATTAACAACT+TGG | + | chr3.3:85524396-85524415 | None:intergenic | 35.0% | |
| CCAAAAAGAAAGATACTCCT+TGG | + | chr3.3:85525506-85525525 | None:intergenic | 35.0% | |
| CGTGTAGCTTCAAGAAATTA+TGG | - | chr3.3:85523920-85523939 | MS.gene012848:CDS | 35.0% | |
| CTACAGGATAATGACGAATT+AGG | - | chr3.3:85524021-85524040 | MS.gene012848:CDS | 35.0% | |
| CTTTCTTGCAGATAAGCATA+TGG | - | chr3.3:85524920-85524939 | MS.gene012848:CDS | 35.0% | |
| GAAACTAAACCAAACAATGC+AGG | + | chr3.3:85522903-85522922 | None:intergenic | 35.0% | |
| GAATTGAGATACACATACCT+TGG | + | chr3.3:85524526-85524545 | None:intergenic | 35.0% | |
| GATCTTGAATCTGGAGATAA+GGG | - | chr3.3:85523350-85523369 | MS.gene012848:intron | 35.0% | |
| GATGTTTCAGATCTTGAATC+TGG | - | chr3.3:85523341-85523360 | MS.gene012848:intron | 35.0% | |
| GCATTTGTGAGAAATTGCAA+AGG | + | chr3.3:85523218-85523237 | None:intergenic | 35.0% | |
| GTAGCTTCAAGAAATTATGG+TGG | - | chr3.3:85523923-85523942 | MS.gene012848:CDS | 35.0% | |
| GTGTTCTCAAATAGGAGATA+CGG | + | chr3.3:85525150-85525169 | None:intergenic | 35.0% | |
| GTTCATAAATGGCAAGAAGA+AGG | - | chr3.3:85523645-85523664 | MS.gene012848:intron | 35.0% | |
| TATTGCAGCAGTGTGTAATT+TGG | - | chr3.3:85523542-85523561 | MS.gene012848:intron | 35.0% | |
| TCTTCAAGAGACAAAGGAAA+AGG | - | chr3.3:85522801-85522820 | MS.gene012848:CDS | 35.0% | |
| TCTTTCATTTCTTCCAGATC+AGG | + | chr3.3:85525327-85525346 | None:intergenic | 35.0% | |
| TGATCTGGAAGAAATGAAAG+AGG | - | chr3.3:85525326-85525345 | MS.gene012848:CDS | 35.0% | |
| TTAAGGAGGAGGTTCATAAA+TGG | - | chr3.3:85523634-85523653 | MS.gene012848:intron | 35.0% | |
| TTATGACATCAGGCAAACAA+AGG | + | chr3.3:85524500-85524519 | None:intergenic | 35.0% | |
| TTGTTTGCCTGATGTCATAA+AGG | - | chr3.3:85524500-85524519 | MS.gene012848:CDS | 35.0% | |
| TTTGTGAGAAATTGCAAAGG+AGG | + | chr3.3:85523215-85523234 | None:intergenic | 35.0% | |
| ! | CAAGGTGTTTCTATGTTTGT+CGG | - | chr3.3:85523037-85523056 | MS.gene012848:CDS | 35.0% |
| ! | GGTGGATGTGTCATATATTT+TGG | - | chr3.3:85523941-85523960 | MS.gene012848:CDS | 35.0% |
| ! | GTATTTGAAGGAACTTGCTT+TGG | - | chr3.3:85525407-85525426 | MS.gene012848:CDS | 35.0% |
| ! | TACTTTTAACAGCTTCAGCA+AGG | - | chr3.3:85525436-85525455 | MS.gene012848:CDS | 35.0% |
| ! | TAGATGGTCTTTTGTGAACA+AGG | - | chr3.3:85524056-85524075 | MS.gene012848:CDS | 35.0% |
| !! | AGAACCTACTTTTCACTGTA+GGG | + | chr3.3:85523007-85523026 | None:intergenic | 35.0% |
| !! | CTTGTTGTTCCACTTCAAAA+TGG | + | chr3.3:85524125-85524144 | None:intergenic | 35.0% |
| !! | GGAGTATCTTTCTTTTTGGT+TGG | - | chr3.3:85525507-85525526 | MS.gene012848:CDS | 35.0% |
| !! | GGTGTTTTTGTTGTGTTTTG+AGG | - | chr3.3:85523058-85523077 | MS.gene012848:CDS | 35.0% |
| !! | GTGTTAGGGATGTTTTTGAT+TGG | - | chr3.3:85523147-85523166 | MS.gene012848:CDS | 35.0% |
| !! | TAGAACCTACTTTTCACTGT+AGG | + | chr3.3:85523008-85523027 | None:intergenic | 35.0% |
| !! | TCTGTGTTTCCATTTTGAAG+TGG | - | chr3.3:85524113-85524132 | MS.gene012848:CDS | 35.0% |
| !! | TTCTACTTCTTGCTATTCCA+AGG | - | chr3.3:85525486-85525505 | MS.gene012848:CDS | 35.0% |
| !! | TTCTCCATTTTTACAACCAC+TGG | + | chr3.3:85522708-85522727 | None:intergenic | 35.0% |
| !! | TTGGTTGGTCTAGACTTAAT+TGG | - | chr3.3:85525522-85525541 | MS.gene012848:CDS | 35.0% |
| !!! | CCAAGGAGTATCTTTCTTTT+TGG | - | chr3.3:85525503-85525522 | MS.gene012848:CDS | 35.0% |
| !!! | GTTAGTTTGTCACGTTGTTT+TGG | - | chr3.3:85524675-85524694 | MS.gene012848:intron | 35.0% |
| ACAACGTGACAAACTAACGA+AGG | + | chr3.3:85524673-85524692 | None:intergenic | 40.0% | |
| ACAGAAAACAGCAGCATAGA+TGG | - | chr3.3:85524448-85524467 | MS.gene012848:CDS | 40.0% | |
| ACATCCCTAACACCAAATGT+CGG | + | chr3.3:85523140-85523159 | None:intergenic | 40.0% | |
| ACCTCTTTCTCATTGCACAT+GGG | + | chr3.3:85523404-85523423 | None:intergenic | 40.0% | |
| AGAACCCTACAGTGAAAAGT+AGG | - | chr3.3:85523000-85523019 | MS.gene012848:CDS | 40.0% | |
| AGATAAGGGTTTCTTCCCTA+TGG | - | chr3.3:85523364-85523383 | MS.gene012848:intron | 40.0% | |
| AGGAGATACGGTACTATGAA+AGG | + | chr3.3:85525138-85525157 | None:intergenic | 40.0% | |
| ATATAACAAACAACCCACGC+AGG | + | chr3.3:85525066-85525085 | None:intergenic | 40.0% | |
| ATGGCACCTTTGTTCAATTG+GGG | - | chr3.3:85522657-85522676 | MS.gene012848:CDS | 40.0% | |
| ATTAGAGATGGGTACAAAGC+TGG | - | chr3.3:85523696-85523715 | MS.gene012848:CDS | 40.0% | |
| CAAAGGCGAAACAATTGCAT+TGG | + | chr3.3:85524483-85524502 | None:intergenic | 40.0% | |
| CAAATTGCTCCTGCATTGTT+TGG | - | chr3.3:85522891-85522910 | MS.gene012848:CDS | 40.0% | |
| CAGCAGTGTGTAATTTGGAT+TGG | - | chr3.3:85523547-85523566 | MS.gene012848:intron | 40.0% | |
| CCTATTTGAGAACACCATGT+CGG | - | chr3.3:85525155-85525174 | MS.gene012848:CDS | 40.0% | |
| CTGTAAGCTTCGTAAGATTC+AGG | + | chr3.3:85524432-85524451 | None:intergenic | 40.0% | |
| GGATCTGAACAAGAACCATA+GGG | + | chr3.3:85523382-85523401 | None:intergenic | 40.0% | |
| TACCTCTTTCTCATTGCACA+TGG | + | chr3.3:85523405-85523424 | None:intergenic | 40.0% | |
| TGAGAAATGACATGACTGCT+GGG | + | chr3.3:85525089-85525108 | None:intergenic | 40.0% | |
| TGATTGGATTTGGATCCACT+TGG | - | chr3.3:85523990-85524009 | MS.gene012848:CDS | 40.0% | |
| TGCTCCACATCTTGAATTGT+GGG | - | chr3.3:85523112-85523131 | MS.gene012848:CDS | 40.0% | |
| TGCTGGAGTTTGGAGAATAA+AGG | - | chr3.3:85524185-85524204 | MS.gene012848:intron | 40.0% | |
| TGGGACATTGATGAACTTGA+AGG | - | chr3.3:85522735-85522754 | MS.gene012848:CDS | 40.0% | |
| TGTACCCATCTCTAATCACA+CGG | + | chr3.3:85523692-85523711 | None:intergenic | 40.0% | |
| TTCTTAAGGAAATCAGGGGT+AGG | + | chr3.3:85523798-85523817 | None:intergenic | 40.0% | |
| TTGAGAAATGACATGACTGC+TGG | + | chr3.3:85525090-85525109 | None:intergenic | 40.0% | |
| ! | AATTCTCAAGGCCCTTTTCA+TGG | - | chr3.3:85524541-85524560 | MS.gene012848:CDS | 40.0% |
| ! | AGAAACCAAAGCATCAACGA+GGG | - | chr3.3:85525292-85525311 | MS.gene012848:CDS | 40.0% |
| ! | CATTTTCCTCAATGATGTGG+AGG | - | chr3.3:85524296-85524315 | MS.gene012848:intron | 40.0% |
| ! | GCAACACCAACTTTCTAAGA+AGG | + | chr3.3:85524975-85524994 | None:intergenic | 40.0% |
| !! | ATAAAGGCTTTGGAAGAAGC+TGG | - | chr3.3:85524201-85524220 | MS.gene012848:intron | 40.0% |
| !! | TCTGAAACATCACCACCTTT+TGG | + | chr3.3:85523332-85523351 | None:intergenic | 40.0% |
| !!! | AAAGGAAAAGCTTTTGGAGC+TGG | + | chr3.3:85525120-85525139 | None:intergenic | 40.0% |
| AAGTCACAAAGGAACACCAG+TGG | - | chr3.3:85522689-85522708 | MS.gene012848:CDS | 45.0% | |
| AATGTCCATATCCTCCACAG+TGG | + | chr3.3:85524244-85524263 | None:intergenic | 45.0% | |
| AGAGGAAATCAGGAGACAAG+AGG | - | chr3.3:85525344-85525363 | MS.gene012848:CDS | 45.0% | |
| AGGAGTCTACTTTCAGCTCA+AGG | - | chr3.3:85525456-85525475 | MS.gene012848:CDS | 45.0% | |
| ATCAGGGGTAGGCTGAAAAT+CGG | + | chr3.3:85523787-85523806 | None:intergenic | 45.0% | |
| CAGCAGCTCTATGAGCTTTA+AGG | + | chr3.3:85522860-85522879 | None:intergenic | 45.0% | |
| CATCTCTAATCACACGGTGT+CGG | + | chr3.3:85523686-85523705 | None:intergenic | 45.0% | |
| CCGACATGGTGTTCTCAAAT+AGG | + | chr3.3:85525158-85525177 | None:intergenic | 45.0% | |
| CCTCTTTCTCATTGCACATG+GGG | + | chr3.3:85523403-85523422 | None:intergenic | 45.0% | |
| CTTAAAGCTCATAGAGCTGC+TGG | - | chr3.3:85522858-85522877 | MS.gene012848:CDS | 45.0% | |
| GACACCGTGTGATTAGAGAT+GGG | - | chr3.3:85523685-85523704 | MS.gene012848:intron | 45.0% | |
| GGAGTCTACTTTCAGCTCAA+GGG | - | chr3.3:85525457-85525476 | MS.gene012848:CDS | 45.0% | |
| GGGATCTGAACAAGAACCAT+AGG | + | chr3.3:85523383-85523402 | None:intergenic | 45.0% | |
| GGTGCGAAAGAAAGTCACAA+AGG | - | chr3.3:85522678-85522697 | MS.gene012848:CDS | 45.0% | |
| GTGCTCCACATCTTGAATTG+TGG | - | chr3.3:85523111-85523130 | MS.gene012848:CDS | 45.0% | |
| TAAGAAGTCCGGTCGTTCAT+CGG | - | chr3.3:85525245-85525264 | MS.gene012848:CDS | 45.0% | |
| TAGGACTTGTGCAAGCTAGA+TGG | - | chr3.3:85524040-85524059 | MS.gene012848:CDS | 45.0% | |
| TCAATGGTACTGCTGGAGTT+TGG | - | chr3.3:85524175-85524194 | MS.gene012848:intron | 45.0% | |
| TCCCATGACAATGTTCGTAC+CGG | - | chr3.3:85525029-85525048 | MS.gene012848:CDS | 45.0% | |
| TCCGGTACGAACATTGTCAT+GGG | + | chr3.3:85525033-85525052 | None:intergenic | 45.0% | |
| TGGGTAGTCACTAAGAAGTC+CGG | - | chr3.3:85525234-85525253 | MS.gene012848:CDS | 45.0% | |
| TTCGAGCTCATCTTCATGGA+TGG | - | chr3.3:85524268-85524287 | MS.gene012848:intron | 45.0% | |
| TTCGCACCCCAATTGAACAA+AGG | + | chr3.3:85522666-85522685 | None:intergenic | 45.0% | |
| ! | ACCTTGGCCTTTATGACATC+AGG | + | chr3.3:85524510-85524529 | None:intergenic | 45.0% |
| ! | GAGAAACCAAAGCATCAACG+AGG | - | chr3.3:85525291-85525310 | MS.gene012848:CDS | 45.0% |
| ! | TTTGGGTTCAATGGTACTGC+TGG | - | chr3.3:85524168-85524187 | MS.gene012848:CDS | 45.0% |
| !! | ACGGTGTCGGTACAAAATGT+TGG | + | chr3.3:85523673-85523692 | None:intergenic | 45.0% |
| !!! | ACATCACCACCTTTTGGAAC+AGG | + | chr3.3:85523326-85523345 | None:intergenic | 45.0% |
| !! | ATAATTAATTAATATTTGAT+TGG | - | chr3.3:85523974-85523993 | MS.gene012848:CDS | 5.0% |
| AACAACCCACGCAGGAATCT+CGG | + | chr3.3:85525058-85525077 | None:intergenic | 50.0% | |
| ACGCACTTCCTAGCTGGAAT+AGG | + | chr3.3:85525209-85525228 | None:intergenic | 50.0% | |
| ATCTCAGGCCTATTCCAGCT+AGG | - | chr3.3:85525198-85525217 | MS.gene012848:CDS | 50.0% | |
| ATTCGTACGCACTTCCTAGC+TGG | + | chr3.3:85525215-85525234 | None:intergenic | 50.0% | |
| CAGCAGCATAGATGGCATTC+TGG | - | chr3.3:85524456-85524475 | MS.gene012848:CDS | 50.0% | |
| CAGGTAACTCACATTGGCAC+TGG | + | chr3.3:85524413-85524432 | None:intergenic | 50.0% | |
| CATGACAATGTTCGTACCGG+AGG | - | chr3.3:85525032-85525051 | MS.gene012848:CDS | 50.0% | |
| CCCCATGTGCAATGAGAAAG+AGG | - | chr3.3:85523400-85523419 | MS.gene012848:intron | 50.0% | |
| CCTGTAGCATCATCACCAAG+TGG | + | chr3.3:85524008-85524027 | None:intergenic | 50.0% | |
| CGACACCGTGTGATTAGAGA+TGG | - | chr3.3:85523684-85523703 | MS.gene012848:intron | 50.0% | |
| CTCCGGTACGAACATTGTCA+TGG | + | chr3.3:85525034-85525053 | None:intergenic | 50.0% | |
| GATGACCCTCGTTGATGCTT+TGG | + | chr3.3:85525300-85525319 | None:intergenic | 50.0% | |
| GCAGTACCTCCACATCATTG+AGG | + | chr3.3:85524305-85524324 | None:intergenic | 50.0% | |
| GCCTGATGTCATAAAGGCCA+AGG | - | chr3.3:85524506-85524525 | MS.gene012848:CDS | 50.0% | |
| GCTGTTCGAGCTCATCTTCA+TGG | - | chr3.3:85524264-85524283 | MS.gene012848:intron | 50.0% | |
| GGTGCCCACAATTCAAGATG+TGG | + | chr3.3:85523119-85523138 | None:intergenic | 50.0% | |
| ! | AGCTAGGAAGTGCGTACGAA+TGG | - | chr3.3:85525214-85525233 | MS.gene012848:CDS | 50.0% |
| ! | CTTTGGAAGAAGCTGGTGGT+TGG | - | chr3.3:85524208-85524227 | MS.gene012848:intron | 50.0% |
| ! | GCTAGGAAGTGCGTACGAAT+GGG | - | chr3.3:85525215-85525234 | MS.gene012848:CDS | 50.0% |
| !! | AAGGCTTTGGAAGAAGCTGG+TGG | - | chr3.3:85524204-85524223 | MS.gene012848:intron | 50.0% |
| !! | CCACTTGGTGATGATGCTAC+AGG | - | chr3.3:85524005-85524024 | MS.gene012848:CDS | 50.0% |
| !! | GAATTGTGGGCACCGACATT+TGG | - | chr3.3:85523125-85523144 | MS.gene012848:CDS | 50.0% |
| !! | GGCACCGACATTTGGTGTTA+GGG | - | chr3.3:85523133-85523152 | MS.gene012848:CDS | 50.0% |
| AAGTCCGGTCGTTCATCGGA+GGG | - | chr3.3:85525249-85525268 | MS.gene012848:CDS | 55.0% | |
| AGAACCGACGCGGATATCGA+CGG | - | chr3.3:85522951-85522970 | MS.gene012848:CDS | 55.0% | |
| AGGGTCATCAGCACCTGATC+TGG | - | chr3.3:85525311-85525330 | MS.gene012848:CDS | 55.0% | |
| ATCACCCTCCGATGAACGAC+CGG | + | chr3.3:85525256-85525275 | None:intergenic | 55.0% | |
| GAGGACCACTGTGGAGGATA+TGG | - | chr3.3:85524236-85524255 | MS.gene012848:intron | 55.0% | |
| GGAAGAAGCTGGTGGTTGGT+TGG | - | chr3.3:85524212-85524231 | MS.gene012848:intron | 55.0% | |
| TTGGTTGGAGAGGACCACTG+TGG | - | chr3.3:85524227-85524246 | MS.gene012848:intron | 55.0% | |
| ! | AAGCTGGTGGTTGGTTGGAG+AGG | - | chr3.3:85524217-85524236 | MS.gene012848:intron | 55.0% |
| ! | GATATCGACGGTGGTGTTGG+TGG | - | chr3.3:85522963-85522982 | MS.gene012848:CDS | 55.0% |
| !! | GGGCACCGACATTTGGTGTT+AGG | - | chr3.3:85523132-85523151 | MS.gene012848:CDS | 55.0% |
| ACCACCGTCGATATCCGCGT+CGG | + | chr3.3:85522958-85522977 | None:intergenic | 60.0% | |
| AGAAGCGACGCGGCGTTTGA+CGG | + | chr3.3:85522928-85522947 | None:intergenic | 60.0% | |
| CGCTTCTGGTAGAACCGACG+CGG | - | chr3.3:85522941-85522960 | MS.gene012848:CDS | 60.0% | |
| CGGTTCTACCAGAAGCGACG+CGG | + | chr3.3:85522938-85522957 | None:intergenic | 60.0% | |
| GAAGTCCGGTCGTTCATCGG+AGG | - | chr3.3:85525248-85525267 | MS.gene012848:CDS | 60.0% | |
| GCGGATATCGACGGTGGTGT+TGG | - | chr3.3:85522960-85522979 | MS.gene012848:CDS | 60.0% | |
| GTTGGAGAGGACCACTGTGG+AGG | - | chr3.3:85524230-85524249 | MS.gene012848:intron | 60.0% | |
| !! | ACGGTGGTGTTGGTGGTGGT+AGG | - | chr3.3:85522970-85522989 | MS.gene012848:CDS | 60.0% |
| !! | ATCGACGGTGGTGTTGGTGG+TGG | - | chr3.3:85522966-85522985 | MS.gene012848:CDS | 60.0% |
| !! | CGGTGGTGTTGGTGGTGGTA+GGG | - | chr3.3:85522971-85522990 | MS.gene012848:CDS | 60.0% |
| ACCGACGCGGATATCGACGG+TGG | - | chr3.3:85522954-85522973 | MS.gene012848:CDS | 65.0% | |
| CACGCAGGAATCTCGGCCTC+CGG | + | chr3.3:85525051-85525070 | None:intergenic | 65.0% | |
| GGAGGCCGAGATTCCTGCGT+GGG | - | chr3.3:85525050-85525069 | MS.gene012848:CDS | 65.0% | |
| GTCAAACGCCGCGTCGCTTC+TGG | - | chr3.3:85522927-85522946 | MS.gene012848:CDS | 65.0% | |
| AGCGACGCGGCGTTTGACGG+CGG | + | chr3.3:85522925-85522944 | None:intergenic | 70.0% | |
| CGGAGGCCGAGATTCCTGCG+TGG | - | chr3.3:85525049-85525068 | MS.gene012848:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 85522657 | 85525560 | 85522657 | ID=MS.gene012848 |
| chr3.3 | mRNA | 85522657 | 85525560 | 85522657 | ID=MS.gene012848.t1;Parent=MS.gene012848 |
| chr3.3 | exon | 85524796 | 85525560 | 85524796 | ID=MS.gene012848.t1.exon1;Parent=MS.gene012848.t1 |
| chr3.3 | CDS | 85524796 | 85525560 | 85524796 | ID=cds.MS.gene012848.t1;Parent=MS.gene012848.t1 |
| chr3.3 | exon | 85524381 | 85524689 | 85524381 | ID=MS.gene012848.t1.exon2;Parent=MS.gene012848.t1 |
| chr3.3 | CDS | 85524381 | 85524689 | 85524381 | ID=cds.MS.gene012848.t1;Parent=MS.gene012848.t1 |
| chr3.3 | exon | 85523900 | 85524190 | 85523900 | ID=MS.gene012848.t1.exon3;Parent=MS.gene012848.t1 |
| chr3.3 | CDS | 85523900 | 85524190 | 85523900 | ID=cds.MS.gene012848.t1;Parent=MS.gene012848.t1 |
| chr3.3 | exon | 85523690 | 85523803 | 85523690 | ID=MS.gene012848.t1.exon4;Parent=MS.gene012848.t1 |
| chr3.3 | CDS | 85523690 | 85523803 | 85523690 | ID=cds.MS.gene012848.t1;Parent=MS.gene012848.t1 |
| chr3.3 | exon | 85522657 | 85523286 | 85522657 | ID=MS.gene012848.t1.exon5;Parent=MS.gene012848.t1 |
| chr3.3 | CDS | 85522657 | 85523286 | 85522657 | ID=cds.MS.gene012848.t1;Parent=MS.gene012848.t1 |
| Gene Sequence |
| Protein sequence |
