Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014716.t1 | XP_003603555.1 | 99.1 | 687 | 6 | 0 | 1 | 687 | 1 | 687 | 0.00E+00 | 1370.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014716.t1 | Q9SB75 | 79.8 | 693 | 133 | 5 | 1 | 687 | 1 | 692 | 0.0e+00 | 1109.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014716.t1 | G7J2T7 | 99.1 | 687 | 6 | 0 | 1 | 687 | 1 | 687 | 0.0e+00 | 1370.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene015052 | MS.gene014716 | PPI |
| MS.gene014716 | MS.gene022823 | PPI |
| MS.gene012848 | MS.gene014716 | PPI |
| MS.gene32853 | MS.gene014716 | PPI |
| MS.gene37459 | MS.gene014716 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014716.t1 | MTR_3g109040 | 99.127 | 687 | 6 | 0 | 1 | 687 | 1 | 687 | 0.0 | 1403 |
| MS.gene014716.t1 | MTR_3g109040 | 99.112 | 676 | 6 | 0 | 12 | 687 | 1 | 676 | 0.0 | 1379 |
| MS.gene014716.t1 | MTR_4g006010 | 74.253 | 703 | 161 | 7 | 1 | 687 | 1 | 699 | 0.0 | 1043 |
| MS.gene014716.t1 | MTR_3g103500 | 65.211 | 710 | 212 | 10 | 1 | 687 | 1 | 698 | 0.0 | 900 |
| MS.gene014716.t1 | MTR_6g007807 | 66.865 | 673 | 206 | 6 | 19 | 687 | 7 | 666 | 0.0 | 897 |
| MS.gene014716.t1 | MTR_8g012320 | 60.790 | 709 | 245 | 8 | 2 | 687 | 4 | 702 | 0.0 | 840 |
| MS.gene014716.t1 | MTR_3g103500 | 63.765 | 494 | 154 | 7 | 1 | 474 | 1 | 489 | 0.0 | 634 |
| MS.gene014716.t1 | MTR_1g061270 | 42.481 | 532 | 269 | 5 | 155 | 683 | 19 | 516 | 1.18e-144 | 432 |
| MS.gene014716.t1 | MTR_1g061510 | 42.105 | 532 | 272 | 5 | 155 | 683 | 19 | 517 | 4.13e-144 | 431 |
| MS.gene014716.t1 | MTR_1g061340 | 41.541 | 532 | 275 | 4 | 155 | 683 | 19 | 517 | 3.14e-143 | 428 |
| MS.gene014716.t1 | MTR_1g061280 | 41.791 | 536 | 276 | 6 | 155 | 687 | 19 | 521 | 3.79e-142 | 426 |
| MS.gene014716.t1 | MTR_7g103590 | 41.917 | 532 | 273 | 5 | 155 | 683 | 28 | 526 | 5.52e-142 | 426 |
| MS.gene014716.t1 | MTR_1g492700 | 45.188 | 478 | 229 | 4 | 207 | 683 | 79 | 524 | 2.42e-141 | 424 |
| MS.gene014716.t1 | MTR_4g055520 | 41.155 | 537 | 283 | 7 | 155 | 683 | 28 | 539 | 1.20e-136 | 412 |
| MS.gene014716.t1 | MTR_7g101950 | 39.332 | 539 | 280 | 5 | 154 | 683 | 24 | 524 | 4.71e-136 | 410 |
| MS.gene014716.t1 | MTR_4g055520 | 45.727 | 433 | 231 | 3 | 155 | 584 | 28 | 459 | 7.95e-134 | 403 |
| MS.gene014716.t1 | MTR_4g055520 | 42.857 | 455 | 230 | 5 | 235 | 683 | 29 | 459 | 2.40e-126 | 383 |
| MS.gene014716.t1 | MTR_4g074380 | 53.093 | 194 | 32 | 3 | 42 | 235 | 7 | 141 | 2.01e-49 | 171 |
| MS.gene014716.t1 | MTR_4g108050 | 77.966 | 59 | 13 | 0 | 42 | 100 | 7 | 65 | 8.26e-23 | 92.8 |
| MS.gene014716.t1 | MTR_4g116020 | 80.769 | 52 | 10 | 0 | 189 | 240 | 59 | 110 | 3.36e-20 | 87.0 |
| MS.gene014716.t1 | MTR_4g116020 | 85.106 | 47 | 7 | 0 | 189 | 235 | 34 | 80 | 3.27e-19 | 83.6 |
| MS.gene014716.t1 | MTR_4g116020 | 85.106 | 47 | 7 | 0 | 189 | 235 | 59 | 105 | 9.02e-19 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014716.t1 | AT4G31590 | 79.654 | 693 | 134 | 5 | 1 | 687 | 1 | 692 | 0.0 | 1105 |
| MS.gene014716.t1 | AT2G24630 | 76.734 | 692 | 154 | 5 | 1 | 687 | 1 | 690 | 0.0 | 1085 |
| MS.gene014716.t1 | AT2G24630 | 76.734 | 692 | 154 | 5 | 1 | 687 | 1 | 690 | 0.0 | 1085 |
| MS.gene014716.t1 | AT3G28180 | 66.618 | 689 | 187 | 8 | 21 | 687 | 6 | 673 | 0.0 | 915 |
| MS.gene014716.t1 | AT4G07960 | 64.316 | 709 | 219 | 9 | 1 | 686 | 1 | 698 | 0.0 | 882 |
| MS.gene014716.t1 | AT4G07960 | 64.316 | 709 | 219 | 9 | 1 | 686 | 1 | 698 | 0.0 | 882 |
| MS.gene014716.t1 | AT3G07330 | 61.842 | 684 | 250 | 5 | 6 | 687 | 8 | 682 | 0.0 | 857 |
| MS.gene014716.t1 | AT3G07330 | 61.842 | 684 | 250 | 5 | 6 | 687 | 8 | 682 | 0.0 | 857 |
| MS.gene014716.t1 | AT5G03760 | 42.830 | 530 | 263 | 9 | 159 | 683 | 33 | 527 | 1.49e-141 | 424 |
| MS.gene014716.t1 | AT5G22740 | 41.353 | 532 | 278 | 5 | 155 | 683 | 29 | 529 | 1.63e-140 | 422 |
| MS.gene014716.t1 | AT1G23480 | 41.264 | 538 | 278 | 6 | 150 | 683 | 47 | 550 | 4.65e-139 | 419 |
| MS.gene014716.t1 | AT1G23480 | 41.264 | 538 | 278 | 6 | 150 | 683 | 47 | 550 | 4.65e-139 | 419 |
| MS.gene014716.t1 | AT1G23480 | 44.050 | 479 | 233 | 4 | 207 | 683 | 33 | 478 | 6.23e-137 | 411 |
| MS.gene014716.t1 | AT2G35650 | 46.697 | 439 | 230 | 3 | 155 | 590 | 51 | 488 | 1.32e-135 | 410 |
| MS.gene014716.t1 | AT4G13410 | 43.506 | 462 | 247 | 3 | 155 | 608 | 43 | 498 | 1.46e-134 | 407 |
| MS.gene014716.t1 | AT2G35650 | 50.526 | 380 | 187 | 1 | 212 | 590 | 37 | 416 | 5.09e-134 | 403 |
| MS.gene014716.t1 | AT2G35650 | 50.526 | 380 | 187 | 1 | 212 | 590 | 37 | 416 | 5.09e-134 | 403 |
| MS.gene014716.t1 | AT5G16190 | 40.490 | 531 | 281 | 4 | 155 | 683 | 6 | 503 | 1.32e-133 | 403 |
| MS.gene014716.t1 | AT1G24070 | 38.941 | 529 | 286 | 5 | 158 | 683 | 57 | 551 | 4.16e-133 | 403 |
| MS.gene014716.t1 | AT5G16190 | 42.495 | 473 | 238 | 3 | 212 | 683 | 3 | 442 | 1.26e-130 | 393 |
| MS.gene014716.t1 | AT5G16190 | 45.372 | 443 | 240 | 2 | 155 | 595 | 6 | 448 | 1.32e-130 | 394 |
| MS.gene014716.t1 | AT3G56000 | 40.449 | 534 | 273 | 7 | 159 | 683 | 26 | 523 | 1.69e-130 | 396 |
| MS.gene014716.t1 | AT5G16190 | 38.121 | 564 | 281 | 5 | 155 | 683 | 6 | 536 | 2.65e-126 | 385 |
| MS.gene014716.t1 | AT4G16590 | 37.222 | 540 | 267 | 8 | 147 | 683 | 49 | 519 | 3.41e-114 | 353 |
| MS.gene014716.t1 | AT1G23480 | 42.344 | 418 | 206 | 4 | 268 | 683 | 21 | 405 | 1.39e-111 | 343 |
| MS.gene014716.t1 | AT2G35650 | 48.447 | 322 | 165 | 1 | 270 | 590 | 9 | 330 | 1.46e-106 | 329 |
| MS.gene014716.t1 | AT4G13410 | 45.833 | 336 | 181 | 1 | 274 | 608 | 2 | 337 | 5.34e-106 | 327 |
| MS.gene014716.t1 | AT1G24070 | 48.276 | 319 | 162 | 2 | 158 | 474 | 57 | 374 | 7.37e-102 | 317 |
| MS.gene014716.t1 | AT4G13410 | 47.706 | 327 | 158 | 2 | 155 | 474 | 43 | 363 | 1.80e-100 | 313 |
Find 156 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTTTCAAGGTTGGCATTT+TGG | 0.120896 | 3.1:-86946183 | MS.gene014716:CDS |
| AATCTTCACAACTGAGAAAT+TGG | 0.125987 | 3.1:+86946473 | None:intergenic |
| GTTAATTTCTTTGGCTGTTT+TGG | 0.142194 | 3.1:-86946223 | MS.gene014716:CDS |
| ACCGTATGCTTCTTTGTTTC+GGG | 0.170225 | 3.1:-86946005 | MS.gene014716:CDS |
| CAGAGGCAGAACTTCCTTTA+TGG | 0.175113 | 3.1:-86944096 | MS.gene014716:CDS |
| TTCTCAGTTGTGAAGATTAA+TGG | 0.191808 | 3.1:-86946468 | MS.gene014716:CDS |
| CAGCAACACCGCTGGCATTC+AGG | 0.192229 | 3.1:-86944599 | MS.gene014716:CDS |
| CTTGGTTAGTAACTGTTCTT+TGG | 0.224084 | 3.1:-86946341 | MS.gene014716:CDS |
| GGGGTGTTTCTTAATTTCTT+TGG | 0.229657 | 3.1:-86944974 | MS.gene014716:CDS |
| TTAGCTTTCTTAACAGGTTC+TGG | 0.235289 | 3.1:+86943752 | None:intergenic |
| AAATAAGGTGAAGGAGTAAA+AGG | 0.246621 | 3.1:+86944150 | None:intergenic |
| TTCTTTGTTTCGGGTGGTTT+TGG | 0.256673 | 3.1:-86945996 | MS.gene014716:CDS |
| GGAAGCATAAATTTATGTTT+TGG | 0.261801 | 3.1:+86945023 | None:intergenic |
| AAATTTAATGCAATGGTATC+TGG | 0.270707 | 3.1:-86943962 | MS.gene014716:CDS |
| CCTGCTGTTCTACTTCAAAA+TGG | 0.273610 | 3.1:+86945002 | None:intergenic |
| CAGGGAGTGGCTGTTGAAAA+AGG | 0.279089 | 3.1:-86946279 | MS.gene014716:CDS |
| ATGCATTTATCCAATGGTTT+TGG | 0.280954 | 3.1:-86945902 | MS.gene014716:CDS |
| CTTAATTTCTTTGGTTTCAA+TGG | 0.284700 | 3.1:-86944965 | MS.gene014716:CDS |
| GACCGTATGCTTCTTTGTTT+CGG | 0.285549 | 3.1:-86946006 | MS.gene014716:CDS |
| TGATCACCTTGACATCATTT+AGG | 0.295314 | 3.1:+86944822 | None:intergenic |
| AGGAGGTAAGGAACAATAAA+AGG | 0.298765 | 3.1:+86944010 | None:intergenic |
| ATCTTGTTAGCTTTCTTAAC+AGG | 0.305652 | 3.1:+86943746 | None:intergenic |
| GAGGTTGTTGCTTACTTTCA+AGG | 0.311089 | 3.1:-86946195 | MS.gene014716:CDS |
| ACAGTTTGCTTAAGAAAATC+AGG | 0.311338 | 3.1:+86945223 | None:intergenic |
| ACAATAAAAGGAAAAGATTT+AGG | 0.311629 | 3.1:+86944022 | None:intergenic |
| ACCTCAGATTTCAAAATTGC+TGG | 0.313915 | 3.1:+86944548 | None:intergenic |
| CTGAGTCATATGAAGCTTAC+AGG | 0.314147 | 3.1:-86944625 | MS.gene014716:CDS |
| AGATTATGTTGATTCCCTTT+TGG | 0.319352 | 3.1:+86945365 | None:intergenic |
| CTTGTAGGCCTTGATTTGAT+TGG | 0.321359 | 3.1:-86943608 | MS.gene014716:CDS |
| AACACCAGTGGTGGTGAAAA+TGG | 0.333264 | 3.1:-86946502 | MS.gene014716:CDS |
| AGGAAGGATTATGCAAAATA+AGG | 0.334621 | 3.1:+86944135 | None:intergenic |
| GTGCCGTTGGTTGTGTTACT+TGG | 0.350606 | 3.1:-86946359 | MS.gene014716:CDS |
| ATTTACAATGGCTCCAAGAT+TGG | 0.353231 | 3.1:-86946562 | None:intergenic |
| TCTGGAACAAACATGGTTAA+AGG | 0.354104 | 3.1:+86944115 | None:intergenic |
| CTACATTGCTCCACCAATTC+AGG | 0.355815 | 3.1:-86946073 | MS.gene014716:CDS |
| AAACCATATGGAACCACCTT+TGG | 0.363318 | 3.1:+86946124 | None:intergenic |
| GCAAACTGTGCCACATTTCA+AGG | 0.370258 | 3.1:-86945209 | MS.gene014716:intron |
| TCCATATGGTTTATGTTGCT+TGG | 0.374551 | 3.1:-86946113 | MS.gene014716:CDS |
| GAGCATACAGTGGTTAATTA+AGG | 0.378443 | 3.1:-86945407 | MS.gene014716:CDS |
| TTGGTTAGTAACTGTTCTTT+GGG | 0.379476 | 3.1:-86946340 | MS.gene014716:CDS |
| ATCAAAGCCCTAGAAGAATC+TGG | 0.380417 | 3.1:-86944923 | MS.gene014716:CDS |
| ATCTTCACAACTGAGAAATT+GGG | 0.381353 | 3.1:+86946474 | None:intergenic |
| TGCTTAAGAAAATCAGGGTT+TGG | 0.389882 | 3.1:+86945229 | None:intergenic |
| AGCAACACCGCTGGCATTCA+GGG | 0.390128 | 3.1:-86944598 | MS.gene014716:CDS |
| GGTATCTGGACTCTTCCAAT+TGG | 0.403642 | 3.1:-86943948 | MS.gene014716:CDS |
| GGGATGACATTCTTCCTTGT+AGG | 0.403705 | 3.1:-86943623 | MS.gene014716:CDS |
| AATTGGGAAGCTCTTATGAA+TGG | 0.404164 | 3.1:-86943931 | MS.gene014716:CDS |
| AATGGATCCCCATTGATCAT+TGG | 0.406112 | 3.1:+86945952 | None:intergenic |
| GCTTGGACCAAACCTAGTTC+AGG | 0.414765 | 3.1:+86945091 | None:intergenic |
| GAGAACAACTGTAGAAGATA+TGG | 0.416414 | 3.1:-86944888 | MS.gene014716:CDS |
| TTTCCAAAGGTGGTTCCATA+TGG | 0.418411 | 3.1:-86946127 | MS.gene014716:CDS |
| TTTGGTTTCAATGGAACTGC+TGG | 0.420392 | 3.1:-86944956 | MS.gene014716:CDS |
| GCAAGAATGCTAAACAAGTT+AGG | 0.432413 | 3.1:-86946407 | MS.gene014716:CDS |
| AGTATGAGGAATGTGCAAAT+TGG | 0.435051 | 3.1:+86946155 | None:intergenic |
| AGGTTAAGCCAATGATCAAT+GGG | 0.437598 | 3.1:-86945960 | MS.gene014716:CDS |
| GAAGTAGAACAGCAGGTCAA+TGG | 0.438411 | 3.1:-86944995 | MS.gene014716:CDS |
| GAAAAGGCTGGTTCGTAGAC+AGG | 0.438680 | 3.1:-86946298 | MS.gene014716:CDS |
| AACTTCGAAAGTGCCTGAAT+TGG | 0.444764 | 3.1:+86946060 | None:intergenic |
| AATTTCTGCAGTGTGTCAAA+TGG | 0.446405 | 3.1:-86945482 | MS.gene014716:CDS |
| TTCGAAAGTGCCTGAATTGG+TGG | 0.450121 | 3.1:+86946063 | None:intergenic |
| TCAATGGAACTGCTGGTGTT+TGG | 0.451289 | 3.1:-86944949 | MS.gene014716:CDS |
| ACCAAGCAACATAAACCATA+TGG | 0.452313 | 3.1:+86946112 | None:intergenic |
| AAGTAGAACAGCAGGTCAAT+GGG | 0.453067 | 3.1:-86944994 | MS.gene014716:CDS |
| GGATAATCCTGAACTAGGTT+TGG | 0.455019 | 3.1:-86945098 | MS.gene014716:CDS |
| ACATAGCAGATCAACCATAA+AGG | 0.458153 | 3.1:+86944082 | None:intergenic |
| AAAGGAAAAGATTTAGGTGC+AGG | 0.463485 | 3.1:+86944028 | None:intergenic |
| TGTTGAGTTACAGCAATTGA+AGG | 0.464132 | 3.1:-86943792 | MS.gene014716:CDS |
| TGCTTGGTGCTATTAAGAAA+AGG | 0.466972 | 3.1:-86946314 | MS.gene014716:CDS |
| GGAATTTGAACCAAAACCAT+TGG | 0.468674 | 3.1:+86945892 | None:intergenic |
| TCAACATCATCAACCTTGAA+TGG | 0.468739 | 3.1:+86945934 | None:intergenic |
| GGTCTCTAAGTGGAACCAAA+AGG | 0.473118 | 3.1:-86945380 | MS.gene014716:CDS |
| ATCTGTATGCATTTATCCAA+TGG | 0.475291 | 3.1:-86945908 | MS.gene014716:CDS |
| AAGGTTAAGCCAATGATCAA+TGG | 0.477569 | 3.1:-86945961 | MS.gene014716:CDS |
| CGGCATCGCTTGGTCAGGAC+TGG | 0.477703 | 3.1:-86945340 | MS.gene014716:CDS |
| ATTCATAAGAGCTTCCCAAT+TGG | 0.477893 | 3.1:+86943933 | None:intergenic |
| TCTATCGGCATCGCTTGGTC+AGG | 0.480004 | 3.1:-86945345 | MS.gene014716:CDS |
| TTACAGGATAATCCTGAACT+AGG | 0.481264 | 3.1:-86945103 | MS.gene014716:intron |
| TCCAATGTGCAATGAGAAAG+AGG | 0.482610 | 3.1:-86945872 | MS.gene014716:intron |
| GTCAGGACTGGATATAAAGC+TGG | 0.486529 | 3.1:-86945328 | MS.gene014716:CDS |
| ACTGTTCTTTGGGATTTGCT+TGG | 0.488047 | 3.1:-86946330 | MS.gene014716:CDS |
| ATTAAGTTTGCTTTCTTCCA+CGG | 0.493411 | 3.1:+86944208 | None:intergenic |
| GAAGCATACGGTCCACGGAT+TGG | 0.496178 | 3.1:+86946016 | None:intergenic |
| AATAAGGTGAAGGAGTAAAA+GGG | 0.501255 | 3.1:+86944151 | None:intergenic |
| GATCAATGGGGATCCATTCA+AGG | 0.501987 | 3.1:-86945947 | MS.gene014716:CDS |
| TGGATTGTCACAAAGAAAGC+TGG | 0.503165 | 3.1:-86943911 | MS.gene014716:CDS |
| TCCGAGCTCACCTCAATGGT+TGG | 0.504060 | 3.1:-86944856 | MS.gene014716:CDS |
| CAAGGAAGAATGTCATCCCT+TGG | 0.504529 | 3.1:+86943627 | None:intergenic |
| ATGGTGCAGATGCTGCATTT+AGG | 0.506624 | 3.1:-86946449 | MS.gene014716:CDS |
| TCAAAGCCCTAGAAGAATCT+GGG | 0.507079 | 3.1:-86944922 | MS.gene014716:CDS |
| TCCAACCATTGAGGTGAGCT+CGG | 0.507425 | 3.1:+86944855 | None:intergenic |
| TTGTTGCTTACTTTCAAGGT+TGG | 0.508405 | 3.1:-86946191 | MS.gene014716:CDS |
| CTCATACTTCTGATTTCCAA+AGG | 0.508694 | 3.1:-86946140 | MS.gene014716:CDS |
| GTATCTGGACTCTTCCAATT+GGG | 0.517060 | 3.1:-86943947 | MS.gene014716:CDS |
| TTCAAGGTTGATGATGTTGA+AGG | 0.517442 | 3.1:-86945931 | MS.gene014716:CDS |
| CTTAAAGCTCATCGTGCCGT+TGG | 0.518642 | 3.1:-86946372 | MS.gene014716:CDS |
| CATAAAGGAAGTTCTGCCTC+TGG | 0.523961 | 3.1:+86944097 | None:intergenic |
| GTCTCTAAGTGGAACCAAAA+GGG | 0.527274 | 3.1:-86945379 | MS.gene014716:CDS |
| CTTTGGAAATCAGAAGTATG+AGG | 0.527295 | 3.1:+86946141 | None:intergenic |
| GCTGTCCGAGCTCACCTCAA+TGG | 0.528881 | 3.1:-86944860 | MS.gene014716:CDS |
| CAATCAAATCAAGGCCTACA+AGG | 0.531066 | 3.1:+86943609 | None:intergenic |
| ACCTCTTTCTCATTGCACAT+TGG | 0.537709 | 3.1:+86945871 | None:intergenic |
| CATAATCTATCGGCATCGCT+TGG | 0.540008 | 3.1:-86945350 | MS.gene014716:CDS |
| ACAAAGAAGCATACGGTCCA+CGG | 0.540829 | 3.1:+86946011 | None:intergenic |
| AAAAGGCTGGTTCGTAGACA+GGG | 0.541112 | 3.1:-86946297 | MS.gene014716:CDS |
| TCTGCTCTCCAATCAAATCA+AGG | 0.541124 | 3.1:+86943600 | None:intergenic |
| TGGTGCTATTAAGAAAAGGC+TGG | 0.543425 | 3.1:-86946310 | MS.gene014716:CDS |
| AGATAAATTTCCAACCATTG+AGG | 0.544758 | 3.1:+86944846 | None:intergenic |
| TTTAACCATGTTTGTTCCAG+AGG | 0.547320 | 3.1:-86944113 | MS.gene014716:CDS |
| CTGCAGTGTGTCAAATGGAT+TGG | 0.548428 | 3.1:-86945477 | MS.gene014716:CDS |
| TTAAGGATTGACATGCATAC+AGG | 0.551931 | 3.1:+86944058 | None:intergenic |
| TTTGTTTCTTATCCAATCCG+TGG | 0.553534 | 3.1:-86946028 | MS.gene014716:CDS |
| TATCTTCCTAAATGATGTCA+AGG | 0.553615 | 3.1:-86944828 | MS.gene014716:intron |
| TCACAAAAGACCATCTAGCT+TGG | 0.556166 | 3.1:+86945074 | None:intergenic |
| GAATGCTAAACAAGTTAGGT+GGG | 0.557662 | 3.1:-86946403 | MS.gene014716:CDS |
| GCTGGTTCGTAGACAGGGAG+TGG | 0.560932 | 3.1:-86946292 | MS.gene014716:CDS |
| TGAATCAGTAAACGATCCCT+TGG | 0.561328 | 3.1:+86945454 | None:intergenic |
| TAGGTGCAGGAAGAATGTTA+AGG | 0.561478 | 3.1:+86944041 | None:intergenic |
| AGGGAATCAACATAATCTAT+CGG | 0.563806 | 3.1:-86945360 | MS.gene014716:CDS |
| TGTGTCAAATGGATTGGCCA+AGG | 0.564789 | 3.1:-86945471 | MS.gene014716:CDS |
| AGAATGCTAAACAAGTTAGG+TGG | 0.573310 | 3.1:-86946404 | MS.gene014716:CDS |
| TGCAGATGCTGCATTTAGGC+CGG | 0.573889 | 3.1:-86946445 | MS.gene014716:CDS |
| TCTTCACAACTGAGAAATTG+GGG | 0.578230 | 3.1:+86946475 | None:intergenic |
| ACAGGAAGCAGCAACACCGC+TGG | 0.578674 | 3.1:-86944607 | MS.gene014716:CDS |
| GTATGCTTCTTTGTTTCGGG+TGG | 0.578929 | 3.1:-86946002 | MS.gene014716:CDS |
| CTGTAAGCTTCATATGACTC+AGG | 0.579123 | 3.1:+86944626 | None:intergenic |
| TAGGTTTGGTCCAAGCTAGA+TGG | 0.582078 | 3.1:-86945084 | MS.gene014716:CDS |
| ACAGTGGTTAATTAAGGCTG+AGG | 0.582788 | 3.1:-86945401 | MS.gene014716:CDS |
| GAACAAACATGGTTAAAGGA+AGG | 0.583578 | 3.1:+86944119 | None:intergenic |
| CAGTTTGCTTAAGAAAATCA+GGG | 0.584235 | 3.1:+86945224 | None:intergenic |
| TGGATGAAGGATTCACAGAA+AGG | 0.587309 | 3.1:-86946525 | MS.gene014716:CDS |
| CTTGTTTAGCATTCTTGCCG+CGG | 0.588225 | 3.1:+86946412 | None:intergenic |
| ATACTTCTGATTTCCAAAGG+TGG | 0.593673 | 3.1:-86946137 | MS.gene014716:CDS |
| TGTGACTAAATTTAATGCAA+TGG | 0.593823 | 3.1:-86943969 | MS.gene014716:CDS |
| TTCTGCCTCTGGAACAAACA+TGG | 0.595292 | 3.1:+86944108 | None:intergenic |
| GATTATGCAAAATAAGGTGA+AGG | 0.598839 | 3.1:+86944141 | None:intergenic |
| AGGTGAAGGAGTAAAAGGGA+AGG | 0.604134 | 3.1:+86944155 | None:intergenic |
| CTTCACTTAACCTTGAAATG+TGG | 0.610582 | 3.1:+86945199 | None:intergenic |
| CAAAGCCCTAGAAGAATCTG+GGG | 0.611476 | 3.1:-86944921 | MS.gene014716:CDS |
| CACAGAGGAGCTTCTGACAG+TGG | 0.622297 | 3.1:-86943818 | MS.gene014716:CDS |
| TAACCAAGTAACACAACCAA+CGG | 0.623439 | 3.1:+86946356 | None:intergenic |
| GTGTCAAATGGATTGGCCAA+GGG | 0.623875 | 3.1:-86945470 | MS.gene014716:CDS |
| ACCCGAAACAAAGAAGCATA+CGG | 0.633312 | 3.1:+86946004 | None:intergenic |
| TTAAGGCTGAGGTCTCTAAG+TGG | 0.635565 | 3.1:-86945390 | MS.gene014716:CDS |
| ACAGAAAGGAACACCAGTGG+TGG | 0.639233 | 3.1:-86946511 | MS.gene014716:CDS |
| ATTAAATTTAGTCACAGACA+TGG | 0.642279 | 3.1:+86943976 | None:intergenic |
| AGAAGTCTGTTATCTGCACA+AGG | 0.657709 | 3.1:-86943674 | MS.gene014716:CDS |
| GCATAGGCCCTGAATGCCAG+CGG | 0.668252 | 3.1:+86944591 | None:intergenic |
| TTGTCACAAAGAAAGCTGGA+AGG | 0.675157 | 3.1:-86943907 | MS.gene014716:CDS |
| ACCAGTGGTGGTGAAAATGG+AGG | 0.695679 | 3.1:-86946499 | MS.gene014716:CDS |
| AGTAGAACAGCAGGTCAATG+GGG | 0.717208 | 3.1:-86944993 | MS.gene014716:CDS |
| TTCACAGAAAGGAACACCAG+TGG | 0.722164 | 3.1:-86946514 | MS.gene014716:CDS |
| GAACAACAAAAGATTCACAG+AGG | 0.731952 | 3.1:-86943833 | MS.gene014716:CDS |
| AAAGCCCTAGAAGAATCTGG+GGG | 0.740097 | 3.1:-86944920 | MS.gene014716:CDS |
| CTGATGATGAGAGCATACAG+TGG | 0.744429 | 3.1:-86945417 | MS.gene014716:CDS |
| TTTAACTGCAGGTGTCACCG+TGG | 0.746704 | 3.1:-86944225 | MS.gene014716:intron |
| GGTTAAGCCAATGATCAATG+GGG | 0.761083 | 3.1:-86945959 | MS.gene014716:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGTTTTTGTTAATTTCTT+TGG | - | chr3.1:86943915-86943934 | MS.gene014716:CDS | 15.0% |
| !! | ACAATAAAAGGAAAAGATTT+AGG | + | chr3.1:86946128-86946147 | None:intergenic | 20.0% |
| !! | CTTAATTGTGTTTAAATTTC+AGG | - | chr3.1:86945484-86945503 | MS.gene014716:CDS | 20.0% |
| !!! | AATAAAATTTAAGACCCTTT+AGG | + | chr3.1:86945904-86945923 | None:intergenic | 20.0% |
| !!! | CTTAAATTTTATTTAACTGC+AGG | - | chr3.1:86945911-86945930 | MS.gene014716:CDS | 20.0% |
| ! | AAATTTAAGAGAGTTCTTCA+GGG | + | chr3.1:86945464-86945483 | None:intergenic | 25.0% |
| ! | AAATTTAATGCAATGGTATC+TGG | - | chr3.1:86946185-86946204 | MS.gene014716:CDS | 25.0% |
| ! | ACTATTACATTGAAACTTAC+TGG | + | chr3.1:86944364-86944383 | None:intergenic | 25.0% |
| ! | AGATTGCAGAAAATTCTTAA+GGG | + | chr3.1:86944493-86944512 | None:intergenic | 25.0% |
| ! | ATTAAATTTAGTCACAGACA+TGG | + | chr3.1:86946174-86946193 | None:intergenic | 25.0% |
| ! | TACTGAGTATTTGCAATTAT+TGG | - | chr3.1:86945863-86945882 | MS.gene014716:intron | 25.0% |
| ! | TATATTATGTACTGCCTAAA+GGG | - | chr3.1:86945887-86945906 | MS.gene014716:CDS | 25.0% |
| ! | TATTATGCACTATGAAAGAA+AGG | + | chr3.1:86945388-86945407 | None:intergenic | 25.0% |
| ! | TCAATGACATTGACAAAATA+TGG | - | chr3.1:86944586-86944605 | MS.gene014716:CDS | 25.0% |
| ! | TGTGACTAAATTTAATGCAA+TGG | - | chr3.1:86946178-86946197 | MS.gene014716:CDS | 25.0% |
| ! | TTATATTATGTACTGCCTAA+AGG | - | chr3.1:86945886-86945905 | MS.gene014716:CDS | 25.0% |
| !! | ATATAAAAAAGAGCTGACTT+TGG | - | chr3.1:86946424-86946443 | MS.gene014716:CDS | 25.0% |
| !! | CTTAATTTCTTTGGTTTCAA+TGG | - | chr3.1:86945182-86945201 | MS.gene014716:intron | 25.0% |
| !!! | GGAAGCATAAATTTATGTTT+TGG | + | chr3.1:86945127-86945146 | None:intergenic | 25.0% |
| !!! | TATAAAGTGTTGTCAAATAG+CGG | - | chr3.1:86945759-86945778 | MS.gene014716:intron | 25.0% |
| AAATAAGGTGAAGGAGTAAA+AGG | + | chr3.1:86946000-86946019 | None:intergenic | 30.0% | |
| AATAAGGTGAAGGAGTAAAA+GGG | + | chr3.1:86945999-86946018 | None:intergenic | 30.0% | |
| AATCTTCACAACTGAGAAAT+TGG | + | chr3.1:86943677-86943696 | None:intergenic | 30.0% | |
| AGATAAATTTCCAACCATTG+AGG | + | chr3.1:86945304-86945323 | None:intergenic | 30.0% | |
| AGGAAGGATTATGCAAAATA+AGG | + | chr3.1:86946015-86946034 | None:intergenic | 30.0% | |
| AGGGAATCAACATAATCTAT+CGG | - | chr3.1:86944787-86944806 | MS.gene014716:intron | 30.0% | |
| ATCTGTATGCATTTATCCAA+TGG | - | chr3.1:86944239-86944258 | MS.gene014716:intron | 30.0% | |
| ATCTTCACAACTGAGAAATT+GGG | + | chr3.1:86943676-86943695 | None:intergenic | 30.0% | |
| CAACTTGAAAAATCCAATCT+TGG | + | chr3.1:86943601-86943620 | None:intergenic | 30.0% | |
| GAAATTTAAGAGAGTTCTTC+AGG | + | chr3.1:86945465-86945484 | None:intergenic | 30.0% | |
| GAGATTGCAGAAAATTCTTA+AGG | + | chr3.1:86944494-86944513 | None:intergenic | 30.0% | |
| GATTATGCAAAATAAGGTGA+AGG | + | chr3.1:86946009-86946028 | None:intergenic | 30.0% | |
| TAAAAACCTCATAGCAAAAC+TGG | + | chr3.1:86944323-86944342 | None:intergenic | 30.0% | |
| TAAAACAACACAGCATCAAA+TGG | + | chr3.1:86944542-86944561 | None:intergenic | 30.0% | |
| TATCTTCCTAAATGATGTCA+AGG | - | chr3.1:86945319-86945338 | MS.gene014716:CDS | 30.0% | |
| TTCTCAGTTGTGAAGATTAA+TGG | - | chr3.1:86943679-86943698 | MS.gene014716:CDS | 30.0% | |
| TTGGTTAGTAACTGTTCTTT+GGG | - | chr3.1:86943807-86943826 | MS.gene014716:CDS | 30.0% | |
| ! | ACAGTTTGCTTAAGAAAATC+AGG | + | chr3.1:86944927-86944946 | None:intergenic | 30.0% |
| ! | ATGCATTTATCCAATGGTTT+TGG | - | chr3.1:86944245-86944264 | MS.gene014716:intron | 30.0% |
| ! | ATTAAGTTTGCTTTCTTCCA+CGG | + | chr3.1:86945942-86945961 | None:intergenic | 30.0% |
| ! | CAGTTTGCTTAAGAAAATCA+GGG | + | chr3.1:86944926-86944945 | None:intergenic | 30.0% |
| ! | GTTAATTTCTTTGGCTGTTT+TGG | - | chr3.1:86943924-86943943 | MS.gene014716:CDS | 30.0% |
| !! | ATCTTGTTAGCTTTCTTAAC+AGG | + | chr3.1:86946404-86946423 | None:intergenic | 30.0% |
| !! | GTTTTGGATCAAATTCAAGA+AGG | - | chr3.1:86944167-86944186 | MS.gene014716:CDS | 30.0% |
| !! | TCTACTTTCTGTTTTTCCAA+GGG | - | chr3.1:86946504-86946523 | MS.gene014716:CDS | 30.0% |
| !! | TGCAAATGACTTGTTATTAC+AGG | - | chr3.1:86945028-86945047 | MS.gene014716:CDS | 30.0% |
| !! | TTCTACTTTCTGTTTTTCCA+AGG | - | chr3.1:86946503-86946522 | MS.gene014716:CDS | 30.0% |
| !!! | AGATTATGTTGATTCCCTTT+TGG | + | chr3.1:86944785-86944804 | None:intergenic | 30.0% |
| !!! | CAAGATTGGATTTTTCAAGT+TGG | - | chr3.1:86943599-86943618 | MS.gene014716:CDS | 30.0% |
| !!! | CTTTTGTTGTTCTATTGACT+CGG | + | chr3.1:86946306-86946325 | None:intergenic | 30.0% |
| !!! | TTCTGCTATTTTTTCTGCTA+AGG | - | chr3.1:86945961-86945980 | MS.gene014716:CDS | 30.0% |
| AAAACTGGAATGCAGAAGTT+CGG | + | chr3.1:86944308-86944327 | None:intergenic | 35.0% | |
| AAAGGAAAAGATTTAGGTGC+AGG | + | chr3.1:86946122-86946141 | None:intergenic | 35.0% | |
| AAGGTTAAGCCAATGATCAA+TGG | - | chr3.1:86944186-86944205 | MS.gene014716:CDS | 35.0% | |
| AATTGGGAAGCTCTTATGAA+TGG | - | chr3.1:86946216-86946235 | MS.gene014716:CDS | 35.0% | |
| AATTTCTGCAGTGTGTCAAA+TGG | - | chr3.1:86944665-86944684 | MS.gene014716:intron | 35.0% | |
| ACAGAAGTTCGATTTCATGA+AGG | + | chr3.1:86945426-86945445 | None:intergenic | 35.0% | |
| ACATAGCAGATCAACCATAA+AGG | + | chr3.1:86946068-86946087 | None:intergenic | 35.0% | |
| ACCAAGCAACATAAACCATA+TGG | + | chr3.1:86944038-86944057 | None:intergenic | 35.0% | |
| ACCTCAGATTTCAAAATTGC+TGG | + | chr3.1:86945602-86945621 | None:intergenic | 35.0% | |
| AGAATGCTAAACAAGTTAGG+TGG | - | chr3.1:86943743-86943762 | MS.gene014716:CDS | 35.0% | |
| AGGAGGTAAGGAACAATAAA+AGG | + | chr3.1:86946140-86946159 | None:intergenic | 35.0% | |
| AGGTTAAGCCAATGATCAAT+GGG | - | chr3.1:86944187-86944206 | MS.gene014716:CDS | 35.0% | |
| AGTATGAGGAATGTGCAAAT+TGG | + | chr3.1:86943995-86944014 | None:intergenic | 35.0% | |
| ATACTTCTGATTTCCAAAGG+TGG | - | chr3.1:86944010-86944029 | MS.gene014716:CDS | 35.0% | |
| ATTCATAAGAGCTTCCCAAT+TGG | + | chr3.1:86946217-86946236 | None:intergenic | 35.0% | |
| CTCATACTTCTGATTTCCAA+AGG | - | chr3.1:86944007-86944026 | MS.gene014716:CDS | 35.0% | |
| CTTCACTTAACCTTGAAATG+TGG | + | chr3.1:86944951-86944970 | None:intergenic | 35.0% | |
| CTTGGTTAGTAACTGTTCTT+TGG | - | chr3.1:86943806-86943825 | MS.gene014716:CDS | 35.0% | |
| GAACAAACATGGTTAAAGGA+AGG | + | chr3.1:86946031-86946050 | None:intergenic | 35.0% | |
| GAACAACAAAAGATTCACAG+AGG | - | chr3.1:86946314-86946333 | MS.gene014716:CDS | 35.0% | |
| GAATGCTAAACAAGTTAGGT+GGG | - | chr3.1:86943744-86943763 | MS.gene014716:CDS | 35.0% | |
| GAGAACAACTGTAGAAGATA+TGG | - | chr3.1:86945259-86945278 | MS.gene014716:CDS | 35.0% | |
| GAGCATACAGTGGTTAATTA+AGG | - | chr3.1:86944740-86944759 | MS.gene014716:intron | 35.0% | |
| GCAAGAATGCTAAACAAGTT+AGG | - | chr3.1:86943740-86943759 | MS.gene014716:CDS | 35.0% | |
| GGAATTTGAACCAAAACCAT+TGG | + | chr3.1:86944258-86944277 | None:intergenic | 35.0% | |
| TAACCAAGTAACACAACCAA+CGG | + | chr3.1:86943794-86943813 | None:intergenic | 35.0% | |
| TCAACATCATCAACCTTGAA+TGG | + | chr3.1:86944216-86944235 | None:intergenic | 35.0% | |
| TCCATATGGTTTATGTTGCT+TGG | - | chr3.1:86944034-86944053 | MS.gene014716:CDS | 35.0% | |
| TCTTCACAACTGAGAAATTG+GGG | + | chr3.1:86943675-86943694 | None:intergenic | 35.0% | |
| TGAGCAATGTTGTCAAATAG+CGG | - | chr3.1:86945679-86945698 | MS.gene014716:intron | 35.0% | |
| TGATCACCTTGACATCATTT+AGG | + | chr3.1:86945328-86945347 | None:intergenic | 35.0% | |
| TGCTTAAGAAAATCAGGGTT+TGG | + | chr3.1:86944921-86944940 | None:intergenic | 35.0% | |
| TGTTGAGTTACAGCAATTGA+AGG | - | chr3.1:86946355-86946374 | MS.gene014716:CDS | 35.0% | |
| TTAAGGATTGACATGCATAC+AGG | + | chr3.1:86946092-86946111 | None:intergenic | 35.0% | |
| TTACAGGATAATCCTGAACT+AGG | - | chr3.1:86945044-86945063 | MS.gene014716:CDS | 35.0% | |
| TTGCAGATCGCAAAAAATAG+TGG | + | chr3.1:86945830-86945849 | None:intergenic | 35.0% | |
| TTTAACCATGTTTGTTCCAG+AGG | - | chr3.1:86946034-86946053 | MS.gene014716:CDS | 35.0% | |
| ! | ACATGGTGTTTTCAAAAAGG+AGG | + | chr3.1:86946157-86946176 | None:intergenic | 35.0% |
| ! | ACTTTCAAGGTTGGCATTTT+GGG | - | chr3.1:86943965-86943984 | MS.gene014716:CDS | 35.0% |
| ! | CAGACATGGTGTTTTCAAAA+AGG | + | chr3.1:86946160-86946179 | None:intergenic | 35.0% |
| ! | CTTTGGAAATCAGAAGTATG+AGG | + | chr3.1:86944009-86944028 | None:intergenic | 35.0% |
| ! | GCATTTGTGTTTCTGAGTTT+AGG | + | chr3.1:86944516-86944535 | None:intergenic | 35.0% |
| ! | GGGGTGTTTCTTAATTTCTT+TGG | - | chr3.1:86945173-86945192 | MS.gene014716:intron | 35.0% |
| ! | GTGTTTTCAAAAAGGAGGTA+AGG | + | chr3.1:86946152-86946171 | None:intergenic | 35.0% |
| ! | TACTTTCAAGGTTGGCATTT+TGG | - | chr3.1:86943964-86943983 | MS.gene014716:CDS | 35.0% |
| ! | TAGATGGTCTTTTGTGAACA+AGG | - | chr3.1:86945079-86945098 | MS.gene014716:CDS | 35.0% |
| ! | TCTGGAACAAACATGGTTAA+AGG | + | chr3.1:86946035-86946054 | None:intergenic | 35.0% |
| ! | TGCACAAATTGACTTTATGC+AGG | - | chr3.1:86944629-86944648 | MS.gene014716:CDS | 35.0% |
| ! | TTAGCTTTCTTAACAGGTTC+TGG | + | chr3.1:86946398-86946417 | None:intergenic | 35.0% |
| ! | TTGTTGCTTACTTTCAAGGT+TGG | - | chr3.1:86943956-86943975 | MS.gene014716:CDS | 35.0% |
| ! | TTTGTTTCTTATCCAATCCG+TGG | - | chr3.1:86944119-86944138 | MS.gene014716:CDS | 35.0% |
| !! | TGCTTGGTGCTATTAAGAAA+AGG | - | chr3.1:86943833-86943852 | MS.gene014716:CDS | 35.0% |
| !! | TTCAAGGTTGATGATGTTGA+AGG | - | chr3.1:86944216-86944235 | MS.gene014716:CDS | 35.0% |
| !!! | GATTGGATTTTTCAAGTTGG+TGG | - | chr3.1:86943602-86943621 | MS.gene014716:CDS | 35.0% |
| !!! | TCCAGCAATTTTGAAATCTG+AGG | - | chr3.1:86945598-86945617 | MS.gene014716:intron | 35.0% |
| !!! | TTTTTCAAGTTGGTGGATGA+AGG | - | chr3.1:86943609-86943628 | MS.gene014716:CDS | 35.0% |
| AAACCATATGGAACCACCTT+TGG | + | chr3.1:86944026-86944045 | None:intergenic | 40.0% | |
| AAGTAGAACAGCAGGTCAAT+GGG | - | chr3.1:86945153-86945172 | MS.gene014716:intron | 40.0% | |
| AATGGATCCCCATTGATCAT+TGG | + | chr3.1:86944198-86944217 | None:intergenic | 40.0% | |
| ACAGTGGTTAATTAAGGCTG+AGG | - | chr3.1:86944746-86944765 | MS.gene014716:intron | 40.0% | |
| ACCTCTTTCTCATTGCACAT+TGG | + | chr3.1:86944279-86944298 | None:intergenic | 40.0% | |
| AGAAGTCTGTTATCTGCACA+AGG | - | chr3.1:86946473-86946492 | MS.gene014716:CDS | 40.0% | |
| ATCAAAGCCCTAGAAGAATC+TGG | - | chr3.1:86945224-86945243 | MS.gene014716:CDS | 40.0% | |
| CAATCAAATCAAGGCCTACA+AGG | + | chr3.1:86946541-86946560 | None:intergenic | 40.0% | |
| CACAGCCTAAAAAGTTGCAT+AGG | + | chr3.1:86945575-86945594 | None:intergenic | 40.0% | |
| CCTGCTGTTCTACTTCAAAA+TGG | + | chr3.1:86945148-86945167 | None:intergenic | 40.0% | |
| CTGAGTCATATGAAGCTTAC+AGG | - | chr3.1:86945522-86945541 | MS.gene014716:intron | 40.0% | |
| CTGTAAGCTTCATATGACTC+AGG | + | chr3.1:86945524-86945543 | None:intergenic | 40.0% | |
| GGATAATCCTGAACTAGGTT+TGG | - | chr3.1:86945049-86945068 | MS.gene014716:CDS | 40.0% | |
| GGTTAAGCCAATGATCAATG+GGG | - | chr3.1:86944188-86944207 | MS.gene014716:CDS | 40.0% | |
| GTATCTGGACTCTTCCAATT+GGG | - | chr3.1:86946200-86946219 | MS.gene014716:CDS | 40.0% | |
| GTCTCTAAGTGGAACCAAAA+GGG | - | chr3.1:86944768-86944787 | MS.gene014716:intron | 40.0% | |
| TAGGTGCAGGAAGAATGTTA+AGG | + | chr3.1:86946109-86946128 | None:intergenic | 40.0% | |
| TATGTTGTAGAGCTATAGCG+TGG | + | chr3.1:86945791-86945810 | None:intergenic | 40.0% | |
| TCAAAGCCCTAGAAGAATCT+GGG | - | chr3.1:86945225-86945244 | MS.gene014716:CDS | 40.0% | |
| TCACAAAAGACCATCTAGCT+TGG | + | chr3.1:86945076-86945095 | None:intergenic | 40.0% | |
| TCCAATGTGCAATGAGAAAG+AGG | - | chr3.1:86944275-86944294 | MS.gene014716:intron | 40.0% | |
| TCTGCTCTCCAATCAAATCA+AGG | + | chr3.1:86946550-86946569 | None:intergenic | 40.0% | |
| TGAATCAGTAAACGATCCCT+TGG | + | chr3.1:86944696-86944715 | None:intergenic | 40.0% | |
| TGGATGAAGGATTCACAGAA+AGG | - | chr3.1:86943622-86943641 | MS.gene014716:CDS | 40.0% | |
| TGGATTGTCACAAAGAAAGC+TGG | - | chr3.1:86946236-86946255 | MS.gene014716:CDS | 40.0% | |
| TTGTCACAAAGAAAGCTGGA+AGG | - | chr3.1:86946240-86946259 | MS.gene014716:CDS | 40.0% | |
| TTTCCAAAGGTGGTTCCATA+TGG | - | chr3.1:86944020-86944039 | MS.gene014716:CDS | 40.0% | |
| ! | ACCCGAAACAAAGAAGCATA+CGG | + | chr3.1:86944146-86944165 | None:intergenic | 40.0% |
| ! | ACCGTATGCTTCTTTGTTTC+GGG | - | chr3.1:86944142-86944161 | MS.gene014716:CDS | 40.0% |
| ! | CTTGTAGGCCTTGATTTGAT+TGG | - | chr3.1:86946539-86946558 | MS.gene014716:CDS | 40.0% |
| ! | GACCGTATGCTTCTTTGTTT+CGG | - | chr3.1:86944141-86944160 | MS.gene014716:CDS | 40.0% |
| ! | GAGGTTGTTGCTTACTTTCA+AGG | - | chr3.1:86943952-86943971 | MS.gene014716:CDS | 40.0% |
| ! | TTTGGTTTCAATGGAACTGC+TGG | - | chr3.1:86945191-86945210 | MS.gene014716:intron | 40.0% |
| !! | AACTTCGAAAGTGCCTGAAT+TGG | + | chr3.1:86944090-86944109 | None:intergenic | 40.0% |
| !! | ACTGTTCTTTGGGATTTGCT+TGG | - | chr3.1:86943817-86943836 | MS.gene014716:CDS | 40.0% |
| !! | TGCATTCCAGTTTTGCTATG+AGG | - | chr3.1:86944314-86944333 | MS.gene014716:intron | 40.0% |
| !! | TGGTGCTATTAAGAAAAGGC+TGG | - | chr3.1:86943837-86943856 | MS.gene014716:CDS | 40.0% |
| !! | TTCTTTGTTTCGGGTGGTTT+TGG | - | chr3.1:86944151-86944170 | MS.gene014716:CDS | 40.0% |
| !!! | CCATTTTGAAGTAGAACAGC+AGG | - | chr3.1:86945145-86945164 | MS.gene014716:intron | 40.0% |
| !!! | TTTGGCTGTTTTGGCTTTTG+AGG | - | chr3.1:86943933-86943952 | MS.gene014716:CDS | 40.0% |
| AAAGCCCTAGAAGAATCTGG+GGG | - | chr3.1:86945227-86945246 | MS.gene014716:CDS | 45.0% | |
| AGGGAGTGGCTGTTGAAAAA+GGG | - | chr3.1:86943869-86943888 | MS.gene014716:CDS | 45.0% | |
| AGGTGAAGGAGTAAAAGGGA+AGG | + | chr3.1:86945995-86946014 | None:intergenic | 45.0% | |
| AGTAGAACAGCAGGTCAATG+GGG | - | chr3.1:86945154-86945173 | MS.gene014716:intron | 45.0% | |
| ATGGTGCAGATGCTGCATTT+AGG | - | chr3.1:86943698-86943717 | MS.gene014716:CDS | 45.0% | |
| CAAAGCCCTAGAAGAATCTG+GGG | - | chr3.1:86945226-86945245 | MS.gene014716:CDS | 45.0% | |
| CAAGGAAGAATGTCATCCCT+TGG | + | chr3.1:86946523-86946542 | None:intergenic | 45.0% | |
| CAGAGGCAGAACTTCCTTTA+TGG | - | chr3.1:86946051-86946070 | MS.gene014716:CDS | 45.0% | |
| CATAAAGGAAGTTCTGCCTC+TGG | + | chr3.1:86946053-86946072 | None:intergenic | 45.0% | |
| CATAATCTATCGGCATCGCT+TGG | - | chr3.1:86944797-86944816 | MS.gene014716:intron | 45.0% | |
| CTACATTGCTCCACCAATTC+AGG | - | chr3.1:86944074-86944093 | MS.gene014716:CDS | 45.0% | |
| CTGCAGTGTGTCAAATGGAT+TGG | - | chr3.1:86944670-86944689 | MS.gene014716:intron | 45.0% | |
| CTTGTTTAGCATTCTTGCCG+CGG | + | chr3.1:86943738-86943757 | None:intergenic | 45.0% | |
| GAAGTAGAACAGCAGGTCAA+TGG | - | chr3.1:86945152-86945171 | MS.gene014716:intron | 45.0% | |
| GAGAGTTCTTCAGGGATCTT+TGG | + | chr3.1:86945456-86945475 | None:intergenic | 45.0% | |
| GATCAATGGGGATCCATTCA+AGG | - | chr3.1:86944200-86944219 | MS.gene014716:CDS | 45.0% | |
| GCAAACTGTGCCACATTTCA+AGG | - | chr3.1:86944938-86944957 | MS.gene014716:CDS | 45.0% | |
| GGGATGACATTCTTCCTTGT+AGG | - | chr3.1:86946524-86946543 | MS.gene014716:CDS | 45.0% | |
| GGTATCTGGACTCTTCCAAT+TGG | - | chr3.1:86946199-86946218 | MS.gene014716:CDS | 45.0% | |
| GGTCTCTAAGTGGAACCAAA+AGG | - | chr3.1:86944767-86944786 | MS.gene014716:intron | 45.0% | |
| GTCAGGACTGGATATAAAGC+TGG | - | chr3.1:86944819-86944838 | MS.gene014716:intron | 45.0% | |
| TCAATGGAACTGCTGGTGTT+TGG | - | chr3.1:86945198-86945217 | MS.gene014716:intron | 45.0% | |
| TTAAGGCTGAGGTCTCTAAG+TGG | - | chr3.1:86944757-86944776 | MS.gene014716:intron | 45.0% | |
| TTCACAGAAAGGAACACCAG+TGG | - | chr3.1:86943633-86943652 | MS.gene014716:CDS | 45.0% | |
| ! | AACACCAGTGGTGGTGAAAA+TGG | - | chr3.1:86943645-86943664 | MS.gene014716:CDS | 45.0% |
| ! | ACAAAGAAGCATACGGTCCA+CGG | + | chr3.1:86944139-86944158 | None:intergenic | 45.0% |
| ! | CAGGGCCTATGCAACTTTTT+AGG | - | chr3.1:86945567-86945586 | MS.gene014716:intron | 45.0% |
| ! | CTGATGATGAGAGCATACAG+TGG | - | chr3.1:86944730-86944749 | MS.gene014716:intron | 45.0% |
| ! | GTATGCTTCTTTGTTTCGGG+TGG | - | chr3.1:86944145-86944164 | MS.gene014716:CDS | 45.0% |
| ! | TAGGTTTGGTCCAAGCTAGA+TGG | - | chr3.1:86945063-86945082 | MS.gene014716:CDS | 45.0% |
| ! | TTGCCGCGGTTTTTATCTAC+CGG | + | chr3.1:86943724-86943743 | None:intergenic | 45.0% |
| !! | AAAAGGCTGGTTCGTAGACA+GGG | - | chr3.1:86943850-86943869 | MS.gene014716:CDS | 45.0% |
| !! | GTGTCAAATGGATTGGCCAA+GGG | - | chr3.1:86944677-86944696 | MS.gene014716:intron | 45.0% |
| !! | TGTGTCAAATGGATTGGCCA+AGG | - | chr3.1:86944676-86944695 | MS.gene014716:intron | 45.0% |
| !! | TTCGAAAGTGCCTGAATTGG+TGG | + | chr3.1:86944087-86944106 | None:intergenic | 45.0% |
| !! | TTCTGCCTCTGGAACAAACA+TGG | + | chr3.1:86946042-86946061 | None:intergenic | 45.0% |
| ACAGAAAGGAACACCAGTGG+TGG | - | chr3.1:86943636-86943655 | MS.gene014716:CDS | 50.0% | |
| AGGCCGGTAGATAAAAACCG+CGG | - | chr3.1:86943718-86943737 | MS.gene014716:CDS | 50.0% | |
| CAGGGAGTGGCTGTTGAAAA+AGG | - | chr3.1:86943868-86943887 | MS.gene014716:CDS | 50.0% | |
| CTTAAAGCTCATCGTGCCGT+TGG | - | chr3.1:86943775-86943794 | MS.gene014716:CDS | 50.0% | |
| GCTTGGACCAAACCTAGTTC+AGG | + | chr3.1:86945059-86945078 | None:intergenic | 50.0% | |
| TCCAACCATTGAGGTGAGCT+CGG | + | chr3.1:86945295-86945314 | None:intergenic | 50.0% | |
| TGCAGATGCTGCATTTAGGC+CGG | - | chr3.1:86943702-86943721 | MS.gene014716:CDS | 50.0% | |
| ! | ACCAGTGGTGGTGAAAATGG+AGG | - | chr3.1:86943648-86943667 | MS.gene014716:CDS | 50.0% |
| ! | GTGCCGTTGGTTGTGTTACT+TGG | - | chr3.1:86943788-86943807 | MS.gene014716:CDS | 50.0% |
| ! | TCCTCCATTTTCACCACCAC+TGG | + | chr3.1:86943652-86943671 | None:intergenic | 50.0% |
| ! | TTTAACTGCAGGTGTCACCG+TGG | - | chr3.1:86945922-86945941 | MS.gene014716:CDS | 50.0% |
| !! | GAAAAGGCTGGTTCGTAGAC+AGG | - | chr3.1:86943849-86943868 | MS.gene014716:CDS | 50.0% |
| AGCAACACCGCTGGCATTCA+GGG | - | chr3.1:86945549-86945568 | MS.gene014716:intron | 55.0% | |
| CACAGAGGAGCTTCTGACAG+TGG | - | chr3.1:86946329-86946348 | MS.gene014716:CDS | 55.0% | |
| CCAGCCCCCAGATTCTTCTA+GGG | + | chr3.1:86945234-86945253 | None:intergenic | 55.0% | |
| GAAGCATACGGTCCACGGAT+TGG | + | chr3.1:86944134-86944153 | None:intergenic | 55.0% | |
| TCCGAGCTCACCTCAATGGT+TGG | - | chr3.1:86945291-86945310 | MS.gene014716:CDS | 55.0% | |
| TCTATCGGCATCGCTTGGTC+AGG | - | chr3.1:86944802-86944821 | MS.gene014716:intron | 55.0% | |
| ACAGGAAGCAGCAACACCGC+TGG | - | chr3.1:86945540-86945559 | MS.gene014716:intron | 60.0% | |
| CAGCAACACCGCTGGCATTC+AGG | - | chr3.1:86945548-86945567 | MS.gene014716:intron | 60.0% | |
| CCCTAGAAGAATCTGGGGGC+TGG | - | chr3.1:86945231-86945250 | MS.gene014716:CDS | 60.0% | |
| GCATAGGCCCTGAATGCCAG+CGG | + | chr3.1:86945559-86945578 | None:intergenic | 60.0% | |
| GCCAGCCCCCAGATTCTTCT+AGG | + | chr3.1:86945235-86945254 | None:intergenic | 60.0% | |
| GCTGTCCGAGCTCACCTCAA+TGG | - | chr3.1:86945287-86945306 | MS.gene014716:CDS | 60.0% | |
| ! | AGAAGAATCTGGGGGCTGGC+TGG | - | chr3.1:86945235-86945254 | MS.gene014716:CDS | 60.0% |
| !! | GCTGGTTCGTAGACAGGGAG+TGG | - | chr3.1:86943855-86943874 | MS.gene014716:CDS | 60.0% |
| CGGCATCGCTTGGTCAGGAC+TGG | - | chr3.1:86944807-86944826 | MS.gene014716:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 86943592 | 86946577 | 86943592 | ID=MS.gene014716 |
| chr3.1 | mRNA | 86943592 | 86946577 | 86943592 | ID=MS.gene014716.t1;Parent=MS.gene014716 |
| chr3.1 | exon | 86945873 | 86946577 | 86945873 | ID=MS.gene014716.t1.exon1;Parent=MS.gene014716.t1 |
| chr3.1 | CDS | 86945873 | 86946577 | 86945873 | ID=cds.MS.gene014716.t1;Parent=MS.gene014716.t1 |
| chr3.1 | exon | 86945210 | 86945518 | 86945210 | ID=MS.gene014716.t1.exon2;Parent=MS.gene014716.t1 |
| chr3.1 | CDS | 86945210 | 86945518 | 86945210 | ID=cds.MS.gene014716.t1;Parent=MS.gene014716.t1 |
| chr3.1 | exon | 86944829 | 86945119 | 86944829 | ID=MS.gene014716.t1.exon3;Parent=MS.gene014716.t1 |
| chr3.1 | CDS | 86944829 | 86945119 | 86944829 | ID=cds.MS.gene014716.t1;Parent=MS.gene014716.t1 |
| chr3.1 | exon | 86944550 | 86944663 | 86944550 | ID=MS.gene014716.t1.exon4;Parent=MS.gene014716.t1 |
| chr3.1 | CDS | 86944550 | 86944663 | 86944550 | ID=cds.MS.gene014716.t1;Parent=MS.gene014716.t1 |
| chr3.1 | exon | 86943592 | 86944236 | 86943592 | ID=MS.gene014716.t1.exon5;Parent=MS.gene014716.t1 |
| chr3.1 | CDS | 86943592 | 86944236 | 86943592 | ID=cds.MS.gene014716.t1;Parent=MS.gene014716.t1 |
| Gene Sequence |
| Protein sequence |
