Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073023.t1 | XP_003603555.1 | 99 | 687 | 7 | 0 | 1 | 687 | 1 | 687 | 0.00E+00 | 1368.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073023.t1 | Q9SB75 | 79.7 | 693 | 134 | 5 | 1 | 687 | 1 | 692 | 0.0e+00 | 1106.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073023.t1 | G7J2T7 | 99.0 | 687 | 7 | 0 | 1 | 687 | 1 | 687 | 0.0e+00 | 1368.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052731 | MS.gene073023 | 0.810574 | 1.08E-50 | -1.69E-46 |
| MS.gene052732 | MS.gene073023 | 0.841328 | 5.08E-58 | -1.69E-46 |
| MS.gene053144 | MS.gene073023 | 0.81844 | 1.96E-52 | -1.69E-46 |
| MS.gene054550 | MS.gene073023 | 0.804047 | 2.61E-49 | -1.69E-46 |
| MS.gene054584 | MS.gene073023 | 0.832822 | 7.59E-56 | -1.69E-46 |
| MS.gene056396 | MS.gene073023 | 0.806085 | 9.76E-50 | -1.69E-46 |
| MS.gene056584 | MS.gene073023 | 0.814561 | 1.45E-51 | -1.69E-46 |
| MS.gene059154 | MS.gene073023 | 0.814817 | 1.27E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene073023 | MS.gene32853 | PPI |
| MS.gene073023 | MS.gene015052 | PPI |
| MS.gene37459 | MS.gene073023 | PPI |
| MS.gene073023 | MS.gene022823 | PPI |
| MS.gene012848 | MS.gene073023 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073023.t1 | MTR_3g109040 | 98.981 | 687 | 7 | 0 | 1 | 687 | 1 | 687 | 0.0 | 1401 |
| MS.gene073023.t1 | MTR_3g109040 | 98.964 | 676 | 7 | 0 | 12 | 687 | 1 | 676 | 0.0 | 1376 |
| MS.gene073023.t1 | MTR_4g006010 | 74.111 | 703 | 162 | 7 | 1 | 687 | 1 | 699 | 0.0 | 1040 |
| MS.gene073023.t1 | MTR_3g103500 | 65.211 | 710 | 212 | 10 | 1 | 687 | 1 | 698 | 0.0 | 898 |
| MS.gene073023.t1 | MTR_6g007807 | 66.716 | 673 | 207 | 6 | 19 | 687 | 7 | 666 | 0.0 | 894 |
| MS.gene073023.t1 | MTR_8g012320 | 60.649 | 709 | 246 | 8 | 2 | 687 | 4 | 702 | 0.0 | 838 |
| MS.gene073023.t1 | MTR_3g103500 | 63.765 | 494 | 154 | 7 | 1 | 474 | 1 | 489 | 0.0 | 634 |
| MS.gene073023.t1 | MTR_1g061270 | 42.293 | 532 | 270 | 5 | 155 | 683 | 19 | 516 | 1.54e-143 | 429 |
| MS.gene073023.t1 | MTR_1g061510 | 41.917 | 532 | 273 | 5 | 155 | 683 | 19 | 517 | 3.69e-143 | 428 |
| MS.gene073023.t1 | MTR_1g061340 | 41.353 | 532 | 276 | 4 | 155 | 683 | 19 | 517 | 3.96e-142 | 426 |
| MS.gene073023.t1 | MTR_1g061280 | 41.604 | 536 | 277 | 6 | 155 | 687 | 19 | 521 | 4.73e-141 | 423 |
| MS.gene073023.t1 | MTR_7g103590 | 41.729 | 532 | 274 | 5 | 155 | 683 | 28 | 526 | 7.35e-141 | 422 |
| MS.gene073023.t1 | MTR_1g492700 | 44.979 | 478 | 230 | 4 | 207 | 683 | 79 | 524 | 3.05e-140 | 421 |
| MS.gene073023.t1 | MTR_4g055520 | 40.968 | 537 | 284 | 7 | 155 | 683 | 28 | 539 | 1.57e-135 | 409 |
| MS.gene073023.t1 | MTR_7g101950 | 39.147 | 539 | 281 | 5 | 154 | 683 | 24 | 524 | 5.43e-135 | 407 |
| MS.gene073023.t1 | MTR_4g055520 | 45.497 | 433 | 232 | 3 | 155 | 584 | 28 | 459 | 9.99e-133 | 400 |
| MS.gene073023.t1 | MTR_4g055520 | 42.637 | 455 | 231 | 5 | 235 | 683 | 29 | 459 | 2.88e-125 | 380 |
| MS.gene073023.t1 | MTR_4g074380 | 53.093 | 194 | 32 | 3 | 42 | 235 | 7 | 141 | 1.95e-49 | 171 |
| MS.gene073023.t1 | MTR_4g108050 | 77.966 | 59 | 13 | 0 | 42 | 100 | 7 | 65 | 8.02e-23 | 93.2 |
| MS.gene073023.t1 | MTR_4g116020 | 80.769 | 52 | 10 | 0 | 189 | 240 | 59 | 110 | 3.36e-20 | 87.0 |
| MS.gene073023.t1 | MTR_4g116020 | 85.106 | 47 | 7 | 0 | 189 | 235 | 34 | 80 | 3.37e-19 | 83.6 |
| MS.gene073023.t1 | MTR_4g116020 | 85.106 | 47 | 7 | 0 | 189 | 235 | 59 | 105 | 8.85e-19 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073023.t1 | AT4G31590 | 79.509 | 693 | 135 | 5 | 1 | 687 | 1 | 692 | 0.0 | 1103 |
| MS.gene073023.t1 | AT2G24630 | 76.590 | 692 | 155 | 5 | 1 | 687 | 1 | 690 | 0.0 | 1082 |
| MS.gene073023.t1 | AT2G24630 | 76.590 | 692 | 155 | 5 | 1 | 687 | 1 | 690 | 0.0 | 1082 |
| MS.gene073023.t1 | AT3G28180 | 66.473 | 689 | 188 | 8 | 21 | 687 | 6 | 673 | 0.0 | 913 |
| MS.gene073023.t1 | AT4G07960 | 64.175 | 709 | 220 | 9 | 1 | 686 | 1 | 698 | 0.0 | 879 |
| MS.gene073023.t1 | AT4G07960 | 64.175 | 709 | 220 | 9 | 1 | 686 | 1 | 698 | 0.0 | 879 |
| MS.gene073023.t1 | AT3G07330 | 61.696 | 684 | 251 | 5 | 6 | 687 | 8 | 682 | 0.0 | 853 |
| MS.gene073023.t1 | AT3G07330 | 61.696 | 684 | 251 | 5 | 6 | 687 | 8 | 682 | 0.0 | 853 |
| MS.gene073023.t1 | AT5G03760 | 42.642 | 530 | 264 | 9 | 159 | 683 | 33 | 527 | 1.38e-140 | 422 |
| MS.gene073023.t1 | AT5G22740 | 41.165 | 532 | 279 | 5 | 155 | 683 | 29 | 529 | 1.68e-139 | 419 |
| MS.gene073023.t1 | AT1G23480 | 41.078 | 538 | 279 | 6 | 150 | 683 | 47 | 550 | 6.16e-138 | 416 |
| MS.gene073023.t1 | AT1G23480 | 41.078 | 538 | 279 | 6 | 150 | 683 | 47 | 550 | 6.16e-138 | 416 |
| MS.gene073023.t1 | AT1G23480 | 43.841 | 479 | 234 | 4 | 207 | 683 | 33 | 478 | 8.65e-136 | 408 |
| MS.gene073023.t1 | AT2G35650 | 46.469 | 439 | 231 | 3 | 155 | 590 | 51 | 488 | 1.34e-134 | 407 |
| MS.gene073023.t1 | AT4G13410 | 43.290 | 462 | 248 | 3 | 155 | 608 | 43 | 498 | 1.66e-133 | 404 |
| MS.gene073023.t1 | AT2G35650 | 50.263 | 380 | 188 | 1 | 212 | 590 | 37 | 416 | 5.39e-133 | 400 |
| MS.gene073023.t1 | AT2G35650 | 50.263 | 380 | 188 | 1 | 212 | 590 | 37 | 416 | 5.39e-133 | 400 |
| MS.gene073023.t1 | AT5G16190 | 40.301 | 531 | 282 | 4 | 155 | 683 | 6 | 503 | 1.79e-132 | 400 |
| MS.gene073023.t1 | AT1G24070 | 38.752 | 529 | 287 | 5 | 158 | 683 | 57 | 551 | 6.11e-132 | 400 |
| MS.gene073023.t1 | AT5G16190 | 45.147 | 443 | 241 | 2 | 155 | 595 | 6 | 448 | 1.20e-129 | 391 |
| MS.gene073023.t1 | AT5G16190 | 42.283 | 473 | 239 | 3 | 212 | 683 | 3 | 442 | 1.67e-129 | 390 |
| MS.gene073023.t1 | AT3G56000 | 40.262 | 534 | 274 | 7 | 159 | 683 | 26 | 523 | 2.62e-129 | 393 |
| MS.gene073023.t1 | AT5G16190 | 37.943 | 564 | 282 | 5 | 155 | 683 | 6 | 536 | 1.21e-125 | 384 |
| MS.gene073023.t1 | AT4G16590 | 37.037 | 540 | 268 | 8 | 147 | 683 | 49 | 519 | 4.03e-113 | 350 |
| MS.gene073023.t1 | AT1G23480 | 42.105 | 418 | 207 | 4 | 268 | 683 | 21 | 405 | 1.69e-110 | 340 |
| MS.gene073023.t1 | AT2G35650 | 48.137 | 322 | 166 | 1 | 270 | 590 | 9 | 330 | 1.66e-105 | 327 |
| MS.gene073023.t1 | AT4G13410 | 39.173 | 411 | 212 | 2 | 274 | 683 | 2 | 375 | 6.13e-105 | 324 |
| MS.gene073023.t1 | AT1G24070 | 48.276 | 319 | 162 | 2 | 158 | 474 | 57 | 374 | 7.94e-102 | 317 |
| MS.gene073023.t1 | AT4G13410 | 47.706 | 327 | 158 | 2 | 155 | 474 | 43 | 363 | 1.67e-100 | 314 |
Find 155 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTTTCAAGGTTGGCATTT+TGG | 0.120896 | 3.4:-94380191 | MS.gene073023:CDS |
| AATCTTCACAACTGAGAAAT+TGG | 0.125987 | 3.4:+94380481 | None:intergenic |
| GTTAATTTCTTTGGCTGTTT+TGG | 0.142194 | 3.4:-94380231 | MS.gene073023:CDS |
| ACCGTATGCTTCTTTGTTTC+GGG | 0.170225 | 3.4:-94380013 | MS.gene073023:CDS |
| CAGAGGCAGAACTTCCTTTA+TGG | 0.175113 | 3.4:-94378104 | MS.gene073023:CDS |
| TTCTCAGTTGTGAAGATTAA+TGG | 0.191808 | 3.4:-94380476 | MS.gene073023:CDS |
| CAGCAACACCGCTGGCATTC+AGG | 0.192229 | 3.4:-94378607 | MS.gene073023:CDS |
| CTTGGTTAGTAACTGTTCTT+TGG | 0.224084 | 3.4:-94380349 | MS.gene073023:CDS |
| GGGGTGTTTCTTAATTTCTT+TGG | 0.229657 | 3.4:-94378982 | MS.gene073023:CDS |
| TTAGCTTTCTTAACAGGTTC+TGG | 0.235289 | 3.4:+94377760 | None:intergenic |
| AAATAAGGTGAAGGAGTAAA+AGG | 0.246621 | 3.4:+94378158 | None:intergenic |
| TTCTTTGTTTCGGGTGGTTT+TGG | 0.256673 | 3.4:-94380004 | MS.gene073023:CDS |
| GGAAGCATAAATTTATGTTT+TGG | 0.261801 | 3.4:+94379031 | None:intergenic |
| AAATTTAATGCAATGGTATC+TGG | 0.270707 | 3.4:-94377970 | MS.gene073023:CDS |
| CCTGCTGTTCTACTTCAAAA+TGG | 0.273610 | 3.4:+94379010 | None:intergenic |
| CAGGGAGTGGCTGTTGAAAA+AGG | 0.279089 | 3.4:-94380287 | MS.gene073023:CDS |
| ATGCATTTATCCAATGGTTT+TGG | 0.280954 | 3.4:-94379910 | MS.gene073023:CDS |
| CTTAATTTCTTTGGTTTCAA+TGG | 0.284700 | 3.4:-94378973 | MS.gene073023:CDS |
| GACCGTATGCTTCTTTGTTT+CGG | 0.285549 | 3.4:-94380014 | MS.gene073023:CDS |
| TGATCACCTTGACATCATTT+AGG | 0.295314 | 3.4:+94378830 | None:intergenic |
| AGGAGGTAAGGAACAATAAA+AGG | 0.298765 | 3.4:+94378018 | None:intergenic |
| ATCTTGTTAGCTTTCTTAAC+AGG | 0.305652 | 3.4:+94377754 | None:intergenic |
| GAGGTTGTTGCTTACTTTCA+AGG | 0.311089 | 3.4:-94380203 | MS.gene073023:CDS |
| ACAGTTTGCTTAAGAAAATC+AGG | 0.311338 | 3.4:+94379231 | None:intergenic |
| ACCTCAGATTTCAAAATTGC+TGG | 0.313915 | 3.4:+94378556 | None:intergenic |
| CTGAGTCATATGAAGCTTAC+AGG | 0.314147 | 3.4:-94378633 | MS.gene073023:CDS |
| AGATTATGTTGATTCCCTTT+TGG | 0.319352 | 3.4:+94379373 | None:intergenic |
| CTTGTAGGCCTTGATTTGAT+TGG | 0.321359 | 3.4:-94377616 | MS.gene073023:CDS |
| AACACCAGTGGTGGTGAAAA+TGG | 0.333264 | 3.4:-94380510 | MS.gene073023:CDS |
| AGGAAGGATTATGCAAAATA+AGG | 0.334621 | 3.4:+94378143 | None:intergenic |
| GTGCCGTTGGTTGTGTTACT+TGG | 0.350606 | 3.4:-94380367 | MS.gene073023:CDS |
| ATTTACAATGGCTCCAAGAT+TGG | 0.353231 | 3.4:-94380570 | None:intergenic |
| TCTGGAACAAACATGGTTAA+AGG | 0.354104 | 3.4:+94378123 | None:intergenic |
| CTACATTGCTCCACCAATTC+AGG | 0.355815 | 3.4:-94380081 | MS.gene073023:CDS |
| AAACCATATGGAACCACCTT+TGG | 0.363318 | 3.4:+94380132 | None:intergenic |
| GCAAACTGTGCCACATTTCA+AGG | 0.370258 | 3.4:-94379217 | MS.gene073023:intron |
| TCCATATGGTTTATGTTGCT+TGG | 0.374551 | 3.4:-94380121 | MS.gene073023:CDS |
| GAGCATACAGTGGTTAATTA+AGG | 0.378443 | 3.4:-94379415 | MS.gene073023:CDS |
| TTGGTTAGTAACTGTTCTTT+GGG | 0.379476 | 3.4:-94380348 | MS.gene073023:CDS |
| ATCAAAGCCCTAGAAGAATC+TGG | 0.380417 | 3.4:-94378931 | MS.gene073023:CDS |
| ATCTTCACAACTGAGAAATT+GGG | 0.381353 | 3.4:+94380482 | None:intergenic |
| TGCTTAAGAAAATCAGGGTT+TGG | 0.389882 | 3.4:+94379237 | None:intergenic |
| AGCAACACCGCTGGCATTCA+GGG | 0.390128 | 3.4:-94378606 | MS.gene073023:CDS |
| GGTATCTGGACTCTTCCAAT+TGG | 0.403642 | 3.4:-94377956 | MS.gene073023:CDS |
| GGGATGACATTCTTCCTTGT+AGG | 0.403705 | 3.4:-94377631 | MS.gene073023:CDS |
| AATTGGGAAGCTCTTATGAA+TGG | 0.404164 | 3.4:-94377939 | MS.gene073023:CDS |
| AATGGATCCCCATTGATCAT+TGG | 0.406112 | 3.4:+94379960 | None:intergenic |
| GCTTGGACCAAACCTAGTTC+AGG | 0.414765 | 3.4:+94379099 | None:intergenic |
| GAGAACAACTGTAGAAGATA+TGG | 0.416414 | 3.4:-94378896 | MS.gene073023:CDS |
| TTTCCAAAGGTGGTTCCATA+TGG | 0.418411 | 3.4:-94380135 | MS.gene073023:CDS |
| TTTGGTTTCAATGGAACTGC+TGG | 0.420392 | 3.4:-94378964 | MS.gene073023:CDS |
| GCAAGAATGCTAAACAAGTT+AGG | 0.432413 | 3.4:-94380415 | MS.gene073023:CDS |
| AGTATGAGGAATGTGCAAAT+TGG | 0.435051 | 3.4:+94380163 | None:intergenic |
| AGGTTAAGCCAATGATCAAT+GGG | 0.437598 | 3.4:-94379968 | MS.gene073023:CDS |
| GAAGTAGAACAGCAGGTCAA+TGG | 0.438411 | 3.4:-94379003 | MS.gene073023:CDS |
| GAAAAGGCTGGTTCGTAGAC+AGG | 0.438680 | 3.4:-94380306 | MS.gene073023:CDS |
| AACTTCGAAAGTGCCTGAAT+TGG | 0.444764 | 3.4:+94380068 | None:intergenic |
| AATTTCTGCAGTGTGTCAAA+TGG | 0.446405 | 3.4:-94379490 | MS.gene073023:CDS |
| TTCGAAAGTGCCTGAATTGG+TGG | 0.450121 | 3.4:+94380071 | None:intergenic |
| TCAATGGAACTGCTGGTGTT+TGG | 0.451289 | 3.4:-94378957 | MS.gene073023:CDS |
| ACCAAGCAACATAAACCATA+TGG | 0.452313 | 3.4:+94380120 | None:intergenic |
| AAGTAGAACAGCAGGTCAAT+GGG | 0.453067 | 3.4:-94379002 | MS.gene073023:CDS |
| GGATAATCCTGAACTAGGTT+TGG | 0.455019 | 3.4:-94379106 | MS.gene073023:CDS |
| ACATAGCAGATCAACCATAA+AGG | 0.458153 | 3.4:+94378090 | None:intergenic |
| TGTTGAGTTACAGCAATTGA+AGG | 0.464132 | 3.4:-94377800 | MS.gene073023:CDS |
| TGCTTGGTGCTATTAAGAAA+AGG | 0.466972 | 3.4:-94380322 | MS.gene073023:CDS |
| GGAATTTGAACCAAAACCAT+TGG | 0.468674 | 3.4:+94379900 | None:intergenic |
| TCAACATCATCAACCTTGAA+TGG | 0.468739 | 3.4:+94379942 | None:intergenic |
| GGTCTCTAAGTGGAACCAAA+AGG | 0.473118 | 3.4:-94379388 | MS.gene073023:CDS |
| ATCTGTATGCATTTATCCAA+TGG | 0.475291 | 3.4:-94379916 | MS.gene073023:CDS |
| AAGGTTAAGCCAATGATCAA+TGG | 0.477569 | 3.4:-94379969 | MS.gene073023:CDS |
| CGGCATCGCTTGGTCAGGAC+TGG | 0.477703 | 3.4:-94379348 | MS.gene073023:CDS |
| ATTCATAAGAGCTTCCCAAT+TGG | 0.477893 | 3.4:+94377941 | None:intergenic |
| TCTATCGGCATCGCTTGGTC+AGG | 0.480004 | 3.4:-94379353 | MS.gene073023:CDS |
| TTACAGGATAATCCTGAACT+AGG | 0.481264 | 3.4:-94379111 | MS.gene073023:intron |
| TCCAATGTGCAATGAGAAAG+AGG | 0.482610 | 3.4:-94379880 | MS.gene073023:intron |
| GTCAGGACTGGATATAAAGC+TGG | 0.486529 | 3.4:-94379336 | MS.gene073023:CDS |
| ACTGTTCTTTGGGATTTGCT+TGG | 0.488047 | 3.4:-94380338 | MS.gene073023:CDS |
| ATTAAGTTTGCTTTCTTCCA+CGG | 0.493411 | 3.4:+94378216 | None:intergenic |
| GAAGCATACGGTCCACGGAT+TGG | 0.496178 | 3.4:+94380024 | None:intergenic |
| AATAAGGTGAAGGAGTAAAA+GGG | 0.501255 | 3.4:+94378159 | None:intergenic |
| GATCAATGGGGATCCATTCA+AGG | 0.501987 | 3.4:-94379955 | MS.gene073023:CDS |
| TGACACAAGCTGTGAGAAGA+AGG | 0.502725 | 3.4:+94377704 | None:intergenic |
| TGGATTGTCACAAAGAAAGC+TGG | 0.503165 | 3.4:-94377919 | MS.gene073023:CDS |
| TCCGAGCTCACCTCAATGGT+TGG | 0.504060 | 3.4:-94378864 | MS.gene073023:CDS |
| CAAGGAAGAATGTCATCCCT+TGG | 0.504529 | 3.4:+94377635 | None:intergenic |
| ATGGTGCAGATGCTGCATTT+AGG | 0.506624 | 3.4:-94380457 | MS.gene073023:CDS |
| TCAAAGCCCTAGAAGAATCT+GGG | 0.507079 | 3.4:-94378930 | MS.gene073023:CDS |
| TCCAACCATTGAGGTGAGCT+CGG | 0.507425 | 3.4:+94378863 | None:intergenic |
| TTGTTGCTTACTTTCAAGGT+TGG | 0.508405 | 3.4:-94380199 | MS.gene073023:CDS |
| CTCATACTTCTGATTTCCAA+AGG | 0.508694 | 3.4:-94380148 | MS.gene073023:CDS |
| GTATCTGGACTCTTCCAATT+GGG | 0.517060 | 3.4:-94377955 | MS.gene073023:CDS |
| TTCAAGGTTGATGATGTTGA+AGG | 0.517442 | 3.4:-94379939 | MS.gene073023:CDS |
| CTTAAAGCTCATCGTGCCGT+TGG | 0.518642 | 3.4:-94380380 | MS.gene073023:CDS |
| CATAAAGGAAGTTCTGCCTC+TGG | 0.523961 | 3.4:+94378105 | None:intergenic |
| GTCTCTAAGTGGAACCAAAA+GGG | 0.527274 | 3.4:-94379387 | MS.gene073023:CDS |
| CTTTGGAAATCAGAAGTATG+AGG | 0.527295 | 3.4:+94380149 | None:intergenic |
| GCTGTCCGAGCTCACCTCAA+TGG | 0.528881 | 3.4:-94378868 | MS.gene073023:CDS |
| CAATCAAATCAAGGCCTACA+AGG | 0.531066 | 3.4:+94377617 | None:intergenic |
| ACCTCTTTCTCATTGCACAT+TGG | 0.537709 | 3.4:+94379879 | None:intergenic |
| CATAATCTATCGGCATCGCT+TGG | 0.540008 | 3.4:-94379358 | MS.gene073023:CDS |
| ACAAAGAAGCATACGGTCCA+CGG | 0.540829 | 3.4:+94380019 | None:intergenic |
| AAAAGGCTGGTTCGTAGACA+GGG | 0.541112 | 3.4:-94380305 | MS.gene073023:CDS |
| TCTGCTCTCCAATCAAATCA+AGG | 0.541124 | 3.4:+94377608 | None:intergenic |
| TGGTGCTATTAAGAAAAGGC+TGG | 0.543425 | 3.4:-94380318 | MS.gene073023:CDS |
| AGATAAATTTCCAACCATTG+AGG | 0.544758 | 3.4:+94378854 | None:intergenic |
| TTTAACCATGTTTGTTCCAG+AGG | 0.547320 | 3.4:-94378121 | MS.gene073023:CDS |
| CTGCAGTGTGTCAAATGGAT+TGG | 0.548428 | 3.4:-94379485 | MS.gene073023:CDS |
| TTAAGGATTGACATGCATAC+AGG | 0.551931 | 3.4:+94378066 | None:intergenic |
| TAGGTGCAGGAAGAATGTTA+AGG | 0.552420 | 3.4:+94378049 | None:intergenic |
| TTTGTTTCTTATCCAATCCG+TGG | 0.553534 | 3.4:-94380036 | MS.gene073023:CDS |
| TATCTTCCTAAATGATGTCA+AGG | 0.553615 | 3.4:-94378836 | MS.gene073023:intron |
| TCACAAAAGACCATCTAGCT+TGG | 0.556166 | 3.4:+94379082 | None:intergenic |
| GAATGCTAAACAAGTTAGGT+GGG | 0.557662 | 3.4:-94380411 | MS.gene073023:CDS |
| GCTGGTTCGTAGACAGGGAG+TGG | 0.560932 | 3.4:-94380300 | MS.gene073023:CDS |
| TGAATCAGTAAACGATCCCT+TGG | 0.561328 | 3.4:+94379462 | None:intergenic |
| AGGGAATCAACATAATCTAT+CGG | 0.563806 | 3.4:-94379368 | MS.gene073023:CDS |
| TGTGTCAAATGGATTGGCCA+AGG | 0.564789 | 3.4:-94379479 | MS.gene073023:CDS |
| AGAATGCTAAACAAGTTAGG+TGG | 0.573310 | 3.4:-94380412 | MS.gene073023:CDS |
| TGCAGATGCTGCATTTAGGC+CGG | 0.573889 | 3.4:-94380453 | MS.gene073023:CDS |
| TCTTCACAACTGAGAAATTG+GGG | 0.578230 | 3.4:+94380483 | None:intergenic |
| ACAGGAAGCAGCAACACCGC+TGG | 0.578674 | 3.4:-94378615 | MS.gene073023:CDS |
| GTATGCTTCTTTGTTTCGGG+TGG | 0.578929 | 3.4:-94380010 | MS.gene073023:CDS |
| CTGTAAGCTTCATATGACTC+AGG | 0.579123 | 3.4:+94378634 | None:intergenic |
| TAGGTTTGGTCCAAGCTAGA+TGG | 0.582078 | 3.4:-94379092 | MS.gene073023:CDS |
| ACAGTGGTTAATTAAGGCTG+AGG | 0.582788 | 3.4:-94379409 | MS.gene073023:CDS |
| GAACAAACATGGTTAAAGGA+AGG | 0.583578 | 3.4:+94378127 | None:intergenic |
| CAGTTTGCTTAAGAAAATCA+GGG | 0.584235 | 3.4:+94379232 | None:intergenic |
| TGGATGAAGGATTCACAGAA+AGG | 0.587309 | 3.4:-94380533 | MS.gene073023:CDS |
| CTTGTTTAGCATTCTTGCCG+CGG | 0.588225 | 3.4:+94380420 | None:intergenic |
| ATACTTCTGATTTCCAAAGG+TGG | 0.593673 | 3.4:-94380145 | MS.gene073023:CDS |
| TGTGACTAAATTTAATGCAA+TGG | 0.593823 | 3.4:-94377977 | MS.gene073023:CDS |
| TTCTGCCTCTGGAACAAACA+TGG | 0.595292 | 3.4:+94378116 | None:intergenic |
| GATTATGCAAAATAAGGTGA+AGG | 0.598839 | 3.4:+94378149 | None:intergenic |
| AGGTGAAGGAGTAAAAGGGA+AGG | 0.604134 | 3.4:+94378163 | None:intergenic |
| CTTCACTTAACCTTGAAATG+TGG | 0.610582 | 3.4:+94379207 | None:intergenic |
| CAAAGCCCTAGAAGAATCTG+GGG | 0.611476 | 3.4:-94378929 | MS.gene073023:CDS |
| CACAGAGGAGCTTCTGACAG+TGG | 0.622297 | 3.4:-94377826 | MS.gene073023:CDS |
| TAACCAAGTAACACAACCAA+CGG | 0.623439 | 3.4:+94380364 | None:intergenic |
| GTGTCAAATGGATTGGCCAA+GGG | 0.623875 | 3.4:-94379478 | MS.gene073023:CDS |
| ACCCGAAACAAAGAAGCATA+CGG | 0.633312 | 3.4:+94380012 | None:intergenic |
| TTAAGGCTGAGGTCTCTAAG+TGG | 0.635565 | 3.4:-94379398 | MS.gene073023:CDS |
| ACAGAAAGGAACACCAGTGG+TGG | 0.639233 | 3.4:-94380519 | MS.gene073023:CDS |
| ATTAAATTTAGTCACAGACA+TGG | 0.642279 | 3.4:+94377984 | None:intergenic |
| AGAAGTCTGTTATCTGCACA+AGG | 0.657709 | 3.4:-94377682 | MS.gene073023:CDS |
| GCATAGGCCCTGAATGCCAG+CGG | 0.668252 | 3.4:+94378599 | None:intergenic |
| TTGTCACAAAGAAAGCTGGA+AGG | 0.675157 | 3.4:-94377915 | MS.gene073023:CDS |
| ACCAGTGGTGGTGAAAATGG+AGG | 0.695679 | 3.4:-94380507 | MS.gene073023:CDS |
| AGTAGAACAGCAGGTCAATG+GGG | 0.717208 | 3.4:-94379001 | MS.gene073023:CDS |
| TTCACAGAAAGGAACACCAG+TGG | 0.722164 | 3.4:-94380522 | MS.gene073023:CDS |
| GAACAACAAAAGATTCACAG+AGG | 0.731952 | 3.4:-94377841 | MS.gene073023:CDS |
| AAAGCCCTAGAAGAATCTGG+GGG | 0.740097 | 3.4:-94378928 | MS.gene073023:CDS |
| CTGATGATGAGAGCATACAG+TGG | 0.744429 | 3.4:-94379425 | MS.gene073023:CDS |
| TTTAACTGCAGGTGTCACCG+TGG | 0.746704 | 3.4:-94378233 | MS.gene073023:intron |
| GGTTAAGCCAATGATCAATG+GGG | 0.761083 | 3.4:-94379967 | MS.gene073023:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATAAAAGGAAAAAATTT+AGG | + | chr3.4:94380136-94380155 | None:intergenic | 15.0% |
| !!! | TTTGTTTTTGTTAATTTCTT+TGG | - | chr3.4:94377923-94377942 | MS.gene073023:CDS | 15.0% |
| !! | CTTAATTGTGTTTAAATTTC+AGG | - | chr3.4:94379492-94379511 | MS.gene073023:CDS | 20.0% |
| !!! | AATAAAATTTAAGACCCTTT+AGG | + | chr3.4:94379912-94379931 | None:intergenic | 20.0% |
| !!! | CTTAAATTTTATTTAACTGC+AGG | - | chr3.4:94379919-94379938 | MS.gene073023:CDS | 20.0% |
| ! | AAATTTAAGAGAGTTCTTCA+GGG | + | chr3.4:94379472-94379491 | None:intergenic | 25.0% |
| ! | AAATTTAATGCAATGGTATC+TGG | - | chr3.4:94380193-94380212 | MS.gene073023:CDS | 25.0% |
| ! | ACTATTACATTGAAACTTAC+TGG | + | chr3.4:94378372-94378391 | None:intergenic | 25.0% |
| ! | AGATTGCAGAAAATTCTTAA+GGG | + | chr3.4:94378501-94378520 | None:intergenic | 25.0% |
| ! | ATTAAATTTAGTCACAGACA+TGG | + | chr3.4:94380182-94380201 | None:intergenic | 25.0% |
| ! | TACTGAGTATTTGCAATTAT+TGG | - | chr3.4:94379871-94379890 | MS.gene073023:intron | 25.0% |
| ! | TATATTATGTACTGCCTAAA+GGG | - | chr3.4:94379895-94379914 | MS.gene073023:CDS | 25.0% |
| ! | TATTATGCACTATGAAAGAA+AGG | + | chr3.4:94379396-94379415 | None:intergenic | 25.0% |
| ! | TCAATGACATTGACAAAATA+TGG | - | chr3.4:94378594-94378613 | MS.gene073023:CDS | 25.0% |
| ! | TGTGACTAAATTTAATGCAA+TGG | - | chr3.4:94380186-94380205 | MS.gene073023:CDS | 25.0% |
| ! | TTATATTATGTACTGCCTAA+AGG | - | chr3.4:94379894-94379913 | MS.gene073023:CDS | 25.0% |
| !! | ATATAAAAAAGAGCTGACTT+TGG | - | chr3.4:94380432-94380451 | MS.gene073023:CDS | 25.0% |
| !! | CTTAATTTCTTTGGTTTCAA+TGG | - | chr3.4:94379190-94379209 | MS.gene073023:intron | 25.0% |
| !!! | GGAAGCATAAATTTATGTTT+TGG | + | chr3.4:94379135-94379154 | None:intergenic | 25.0% |
| !!! | TATAAAGTGTTGTCAAATAG+CGG | - | chr3.4:94379767-94379786 | MS.gene073023:intron | 25.0% |
| AAAGGAAAAAATTTAGGTGC+AGG | + | chr3.4:94380130-94380149 | None:intergenic | 30.0% | |
| AAATAAGGTGAAGGAGTAAA+AGG | + | chr3.4:94380008-94380027 | None:intergenic | 30.0% | |
| AATAAGGTGAAGGAGTAAAA+GGG | + | chr3.4:94380007-94380026 | None:intergenic | 30.0% | |
| AATCTTCACAACTGAGAAAT+TGG | + | chr3.4:94377685-94377704 | None:intergenic | 30.0% | |
| AGATAAATTTCCAACCATTG+AGG | + | chr3.4:94379312-94379331 | None:intergenic | 30.0% | |
| AGGAAGGATTATGCAAAATA+AGG | + | chr3.4:94380023-94380042 | None:intergenic | 30.0% | |
| AGGGAATCAACATAATCTAT+CGG | - | chr3.4:94378795-94378814 | MS.gene073023:intron | 30.0% | |
| ATCTGTATGCATTTATCCAA+TGG | - | chr3.4:94378247-94378266 | MS.gene073023:intron | 30.0% | |
| ATCTTCACAACTGAGAAATT+GGG | + | chr3.4:94377684-94377703 | None:intergenic | 30.0% | |
| CAACTTGAAAAATCCAATCT+TGG | + | chr3.4:94377609-94377628 | None:intergenic | 30.0% | |
| GAAATTTAAGAGAGTTCTTC+AGG | + | chr3.4:94379473-94379492 | None:intergenic | 30.0% | |
| GAGATTGCAGAAAATTCTTA+AGG | + | chr3.4:94378502-94378521 | None:intergenic | 30.0% | |
| GATTATGCAAAATAAGGTGA+AGG | + | chr3.4:94380017-94380036 | None:intergenic | 30.0% | |
| TAAAAACCTCATAGCAAAAC+TGG | + | chr3.4:94378331-94378350 | None:intergenic | 30.0% | |
| TAAAACAACACAGCATCAAA+TGG | + | chr3.4:94378550-94378569 | None:intergenic | 30.0% | |
| TATCTTCCTAAATGATGTCA+AGG | - | chr3.4:94379327-94379346 | MS.gene073023:CDS | 30.0% | |
| TTCTCAGTTGTGAAGATTAA+TGG | - | chr3.4:94377687-94377706 | MS.gene073023:CDS | 30.0% | |
| TTGGTTAGTAACTGTTCTTT+GGG | - | chr3.4:94377815-94377834 | MS.gene073023:CDS | 30.0% | |
| ! | ACAGTTTGCTTAAGAAAATC+AGG | + | chr3.4:94378935-94378954 | None:intergenic | 30.0% |
| ! | ATGCATTTATCCAATGGTTT+TGG | - | chr3.4:94378253-94378272 | MS.gene073023:intron | 30.0% |
| ! | ATTAAGTTTGCTTTCTTCCA+CGG | + | chr3.4:94379950-94379969 | None:intergenic | 30.0% |
| ! | CAGTTTGCTTAAGAAAATCA+GGG | + | chr3.4:94378934-94378953 | None:intergenic | 30.0% |
| ! | GTTAATTTCTTTGGCTGTTT+TGG | - | chr3.4:94377932-94377951 | MS.gene073023:CDS | 30.0% |
| !! | ATCTTGTTAGCTTTCTTAAC+AGG | + | chr3.4:94380412-94380431 | None:intergenic | 30.0% |
| !! | GTTTTGGATCAAATTCAAGA+AGG | - | chr3.4:94378175-94378194 | MS.gene073023:CDS | 30.0% |
| !! | TCTACTTTCTGTTTTTCCAA+GGG | - | chr3.4:94380512-94380531 | MS.gene073023:CDS | 30.0% |
| !! | TGCAAATGACTTGTTATTAC+AGG | - | chr3.4:94379036-94379055 | MS.gene073023:CDS | 30.0% |
| !! | TTCTACTTTCTGTTTTTCCA+AGG | - | chr3.4:94380511-94380530 | MS.gene073023:CDS | 30.0% |
| !!! | AGATTATGTTGATTCCCTTT+TGG | + | chr3.4:94378793-94378812 | None:intergenic | 30.0% |
| !!! | CAAGATTGGATTTTTCAAGT+TGG | - | chr3.4:94377607-94377626 | MS.gene073023:CDS | 30.0% |
| !!! | CTTTTGTTGTTCTATTGACT+CGG | + | chr3.4:94380314-94380333 | None:intergenic | 30.0% |
| !!! | TTCTGCTATTTTTTCTGCTA+AGG | - | chr3.4:94379969-94379988 | MS.gene073023:CDS | 30.0% |
| AAAACTGGAATGCAGAAGTT+CGG | + | chr3.4:94378316-94378335 | None:intergenic | 35.0% | |
| AAGGTTAAGCCAATGATCAA+TGG | - | chr3.4:94378194-94378213 | MS.gene073023:CDS | 35.0% | |
| AATTGGGAAGCTCTTATGAA+TGG | - | chr3.4:94380224-94380243 | MS.gene073023:CDS | 35.0% | |
| AATTTCTGCAGTGTGTCAAA+TGG | - | chr3.4:94378673-94378692 | MS.gene073023:intron | 35.0% | |
| ACAGAAGTTCGATTTCATGA+AGG | + | chr3.4:94379434-94379453 | None:intergenic | 35.0% | |
| ACATAGCAGATCAACCATAA+AGG | + | chr3.4:94380076-94380095 | None:intergenic | 35.0% | |
| ACCAAGCAACATAAACCATA+TGG | + | chr3.4:94378046-94378065 | None:intergenic | 35.0% | |
| ACCTCAGATTTCAAAATTGC+TGG | + | chr3.4:94379610-94379629 | None:intergenic | 35.0% | |
| AGAATGCTAAACAAGTTAGG+TGG | - | chr3.4:94377751-94377770 | MS.gene073023:CDS | 35.0% | |
| AGGAGGTAAGGAACAATAAA+AGG | + | chr3.4:94380148-94380167 | None:intergenic | 35.0% | |
| AGGTTAAGCCAATGATCAAT+GGG | - | chr3.4:94378195-94378214 | MS.gene073023:CDS | 35.0% | |
| AGTATGAGGAATGTGCAAAT+TGG | + | chr3.4:94378003-94378022 | None:intergenic | 35.0% | |
| ATACTTCTGATTTCCAAAGG+TGG | - | chr3.4:94378018-94378037 | MS.gene073023:CDS | 35.0% | |
| ATTCATAAGAGCTTCCCAAT+TGG | + | chr3.4:94380225-94380244 | None:intergenic | 35.0% | |
| CTCATACTTCTGATTTCCAA+AGG | - | chr3.4:94378015-94378034 | MS.gene073023:CDS | 35.0% | |
| CTTCACTTAACCTTGAAATG+TGG | + | chr3.4:94378959-94378978 | None:intergenic | 35.0% | |
| CTTGGTTAGTAACTGTTCTT+TGG | - | chr3.4:94377814-94377833 | MS.gene073023:CDS | 35.0% | |
| GAACAAACATGGTTAAAGGA+AGG | + | chr3.4:94380039-94380058 | None:intergenic | 35.0% | |
| GAACAACAAAAGATTCACAG+AGG | - | chr3.4:94380322-94380341 | MS.gene073023:CDS | 35.0% | |
| GAATGCTAAACAAGTTAGGT+GGG | - | chr3.4:94377752-94377771 | MS.gene073023:CDS | 35.0% | |
| GAGAACAACTGTAGAAGATA+TGG | - | chr3.4:94379267-94379286 | MS.gene073023:CDS | 35.0% | |
| GAGCATACAGTGGTTAATTA+AGG | - | chr3.4:94378748-94378767 | MS.gene073023:intron | 35.0% | |
| GCAAGAATGCTAAACAAGTT+AGG | - | chr3.4:94377748-94377767 | MS.gene073023:CDS | 35.0% | |
| GGAATTTGAACCAAAACCAT+TGG | + | chr3.4:94378266-94378285 | None:intergenic | 35.0% | |
| TAACCAAGTAACACAACCAA+CGG | + | chr3.4:94377802-94377821 | None:intergenic | 35.0% | |
| TCAACATCATCAACCTTGAA+TGG | + | chr3.4:94378224-94378243 | None:intergenic | 35.0% | |
| TCCATATGGTTTATGTTGCT+TGG | - | chr3.4:94378042-94378061 | MS.gene073023:CDS | 35.0% | |
| TCTTCACAACTGAGAAATTG+GGG | + | chr3.4:94377683-94377702 | None:intergenic | 35.0% | |
| TGAGCAATGTTGTCAAATAG+CGG | - | chr3.4:94379687-94379706 | MS.gene073023:intron | 35.0% | |
| TGATCACCTTGACATCATTT+AGG | + | chr3.4:94379336-94379355 | None:intergenic | 35.0% | |
| TGCTTAAGAAAATCAGGGTT+TGG | + | chr3.4:94378929-94378948 | None:intergenic | 35.0% | |
| TGTTGAGTTACAGCAATTGA+AGG | - | chr3.4:94380363-94380382 | MS.gene073023:CDS | 35.0% | |
| TTAAGGATTGACATGCATAC+AGG | + | chr3.4:94380100-94380119 | None:intergenic | 35.0% | |
| TTACAGGATAATCCTGAACT+AGG | - | chr3.4:94379052-94379071 | MS.gene073023:CDS | 35.0% | |
| TTGCAGATCGCAAAAAATAG+TGG | + | chr3.4:94379838-94379857 | None:intergenic | 35.0% | |
| TTTAACCATGTTTGTTCCAG+AGG | - | chr3.4:94380042-94380061 | MS.gene073023:CDS | 35.0% | |
| ! | ACATGGTGTTTTCAAAAAGG+AGG | + | chr3.4:94380165-94380184 | None:intergenic | 35.0% |
| ! | ACTTTCAAGGTTGGCATTTT+GGG | - | chr3.4:94377973-94377992 | MS.gene073023:CDS | 35.0% |
| ! | CAGACATGGTGTTTTCAAAA+AGG | + | chr3.4:94380168-94380187 | None:intergenic | 35.0% |
| ! | CTTTGGAAATCAGAAGTATG+AGG | + | chr3.4:94378017-94378036 | None:intergenic | 35.0% |
| ! | GCATTTGTGTTTCTGAGTTT+AGG | + | chr3.4:94378524-94378543 | None:intergenic | 35.0% |
| ! | GGGGTGTTTCTTAATTTCTT+TGG | - | chr3.4:94379181-94379200 | MS.gene073023:intron | 35.0% |
| ! | GTGTTTTCAAAAAGGAGGTA+AGG | + | chr3.4:94380160-94380179 | None:intergenic | 35.0% |
| ! | TACTTTCAAGGTTGGCATTT+TGG | - | chr3.4:94377972-94377991 | MS.gene073023:CDS | 35.0% |
| ! | TAGATGGTCTTTTGTGAACA+AGG | - | chr3.4:94379087-94379106 | MS.gene073023:CDS | 35.0% |
| ! | TCTGGAACAAACATGGTTAA+AGG | + | chr3.4:94380043-94380062 | None:intergenic | 35.0% |
| ! | TGCACAAATTGACTTTATGC+AGG | - | chr3.4:94378637-94378656 | MS.gene073023:CDS | 35.0% |
| ! | TTAGCTTTCTTAACAGGTTC+TGG | + | chr3.4:94380406-94380425 | None:intergenic | 35.0% |
| ! | TTGTTGCTTACTTTCAAGGT+TGG | - | chr3.4:94377964-94377983 | MS.gene073023:CDS | 35.0% |
| ! | TTTGTTTCTTATCCAATCCG+TGG | - | chr3.4:94378127-94378146 | MS.gene073023:CDS | 35.0% |
| !! | TGCTTGGTGCTATTAAGAAA+AGG | - | chr3.4:94377841-94377860 | MS.gene073023:CDS | 35.0% |
| !! | TTCAAGGTTGATGATGTTGA+AGG | - | chr3.4:94378224-94378243 | MS.gene073023:CDS | 35.0% |
| !!! | GATTGGATTTTTCAAGTTGG+TGG | - | chr3.4:94377610-94377629 | MS.gene073023:CDS | 35.0% |
| !!! | TCCAGCAATTTTGAAATCTG+AGG | - | chr3.4:94379606-94379625 | MS.gene073023:intron | 35.0% |
| !!! | TTTTTCAAGTTGGTGGATGA+AGG | - | chr3.4:94377617-94377636 | MS.gene073023:CDS | 35.0% |
| AAACCATATGGAACCACCTT+TGG | + | chr3.4:94378034-94378053 | None:intergenic | 40.0% | |
| AAGTAGAACAGCAGGTCAAT+GGG | - | chr3.4:94379161-94379180 | MS.gene073023:intron | 40.0% | |
| AATGGATCCCCATTGATCAT+TGG | + | chr3.4:94378206-94378225 | None:intergenic | 40.0% | |
| ACAGTGGTTAATTAAGGCTG+AGG | - | chr3.4:94378754-94378773 | MS.gene073023:intron | 40.0% | |
| ACCTCTTTCTCATTGCACAT+TGG | + | chr3.4:94378287-94378306 | None:intergenic | 40.0% | |
| AGAAGTCTGTTATCTGCACA+AGG | - | chr3.4:94380481-94380500 | MS.gene073023:CDS | 40.0% | |
| ATCAAAGCCCTAGAAGAATC+TGG | - | chr3.4:94379232-94379251 | MS.gene073023:CDS | 40.0% | |
| CAATCAAATCAAGGCCTACA+AGG | + | chr3.4:94380549-94380568 | None:intergenic | 40.0% | |
| CACAGCCTAAAAAGTTGCAT+AGG | + | chr3.4:94379583-94379602 | None:intergenic | 40.0% | |
| CCTGCTGTTCTACTTCAAAA+TGG | + | chr3.4:94379156-94379175 | None:intergenic | 40.0% | |
| CTGAGTCATATGAAGCTTAC+AGG | - | chr3.4:94379530-94379549 | MS.gene073023:intron | 40.0% | |
| CTGTAAGCTTCATATGACTC+AGG | + | chr3.4:94379532-94379551 | None:intergenic | 40.0% | |
| GGATAATCCTGAACTAGGTT+TGG | - | chr3.4:94379057-94379076 | MS.gene073023:CDS | 40.0% | |
| GGTTAAGCCAATGATCAATG+GGG | - | chr3.4:94378196-94378215 | MS.gene073023:CDS | 40.0% | |
| GTATCTGGACTCTTCCAATT+GGG | - | chr3.4:94380208-94380227 | MS.gene073023:CDS | 40.0% | |
| GTCTCTAAGTGGAACCAAAA+GGG | - | chr3.4:94378776-94378795 | MS.gene073023:intron | 40.0% | |
| TAGGTGCAGGAAGAATGTTA+AGG | + | chr3.4:94380117-94380136 | None:intergenic | 40.0% | |
| TATGTTGTAGAGCTATAGCG+CGG | + | chr3.4:94379799-94379818 | None:intergenic | 40.0% | |
| TCAAAGCCCTAGAAGAATCT+GGG | - | chr3.4:94379233-94379252 | MS.gene073023:CDS | 40.0% | |
| TCACAAAAGACCATCTAGCT+TGG | + | chr3.4:94379084-94379103 | None:intergenic | 40.0% | |
| TCCAATGTGCAATGAGAAAG+AGG | - | chr3.4:94378283-94378302 | MS.gene073023:intron | 40.0% | |
| TCTGCTCTCCAATCAAATCA+AGG | + | chr3.4:94380558-94380577 | None:intergenic | 40.0% | |
| TGAATCAGTAAACGATCCCT+TGG | + | chr3.4:94378704-94378723 | None:intergenic | 40.0% | |
| TGGATGAAGGATTCACAGAA+AGG | - | chr3.4:94377630-94377649 | MS.gene073023:CDS | 40.0% | |
| TGGATTGTCACAAAGAAAGC+TGG | - | chr3.4:94380244-94380263 | MS.gene073023:CDS | 40.0% | |
| TTGTCACAAAGAAAGCTGGA+AGG | - | chr3.4:94380248-94380267 | MS.gene073023:CDS | 40.0% | |
| TTTCCAAAGGTGGTTCCATA+TGG | - | chr3.4:94378028-94378047 | MS.gene073023:CDS | 40.0% | |
| ! | ACCCGAAACAAAGAAGCATA+CGG | + | chr3.4:94378154-94378173 | None:intergenic | 40.0% |
| ! | ACCGTATGCTTCTTTGTTTC+GGG | - | chr3.4:94378150-94378169 | MS.gene073023:CDS | 40.0% |
| ! | CTTGTAGGCCTTGATTTGAT+TGG | - | chr3.4:94380547-94380566 | MS.gene073023:CDS | 40.0% |
| ! | GACCGTATGCTTCTTTGTTT+CGG | - | chr3.4:94378149-94378168 | MS.gene073023:CDS | 40.0% |
| ! | GAGGTTGTTGCTTACTTTCA+AGG | - | chr3.4:94377960-94377979 | MS.gene073023:CDS | 40.0% |
| ! | TTTGGTTTCAATGGAACTGC+TGG | - | chr3.4:94379199-94379218 | MS.gene073023:intron | 40.0% |
| !! | AACTTCGAAAGTGCCTGAAT+TGG | + | chr3.4:94378098-94378117 | None:intergenic | 40.0% |
| !! | ACTGTTCTTTGGGATTTGCT+TGG | - | chr3.4:94377825-94377844 | MS.gene073023:CDS | 40.0% |
| !! | TGCATTCCAGTTTTGCTATG+AGG | - | chr3.4:94378322-94378341 | MS.gene073023:intron | 40.0% |
| !! | TGGTGCTATTAAGAAAAGGC+TGG | - | chr3.4:94377845-94377864 | MS.gene073023:CDS | 40.0% |
| !! | TTCTTTGTTTCGGGTGGTTT+TGG | - | chr3.4:94378159-94378178 | MS.gene073023:CDS | 40.0% |
| !!! | CCATTTTGAAGTAGAACAGC+AGG | - | chr3.4:94379153-94379172 | MS.gene073023:intron | 40.0% |
| !!! | TTTGGCTGTTTTGGCTTTTG+AGG | - | chr3.4:94377941-94377960 | MS.gene073023:CDS | 40.0% |
| AAAGCCCTAGAAGAATCTGG+GGG | - | chr3.4:94379235-94379254 | MS.gene073023:CDS | 45.0% | |
| AGGGAGTGGCTGTTGAAAAA+GGG | - | chr3.4:94377877-94377896 | MS.gene073023:CDS | 45.0% | |
| AGGTGAAGGAGTAAAAGGGA+AGG | + | chr3.4:94380003-94380022 | None:intergenic | 45.0% | |
| AGTAGAACAGCAGGTCAATG+GGG | - | chr3.4:94379162-94379181 | MS.gene073023:intron | 45.0% | |
| ATGGTGCAGATGCTGCATTT+AGG | - | chr3.4:94377706-94377725 | MS.gene073023:CDS | 45.0% | |
| CAAAGCCCTAGAAGAATCTG+GGG | - | chr3.4:94379234-94379253 | MS.gene073023:CDS | 45.0% | |
| CAAGGAAGAATGTCATCCCT+TGG | + | chr3.4:94380531-94380550 | None:intergenic | 45.0% | |
| CAGAGGCAGAACTTCCTTTA+TGG | - | chr3.4:94380059-94380078 | MS.gene073023:CDS | 45.0% | |
| CATAAAGGAAGTTCTGCCTC+TGG | + | chr3.4:94380061-94380080 | None:intergenic | 45.0% | |
| CATAATCTATCGGCATCGCT+TGG | - | chr3.4:94378805-94378824 | MS.gene073023:intron | 45.0% | |
| CTACATTGCTCCACCAATTC+AGG | - | chr3.4:94378082-94378101 | MS.gene073023:CDS | 45.0% | |
| CTGCAGTGTGTCAAATGGAT+TGG | - | chr3.4:94378678-94378697 | MS.gene073023:intron | 45.0% | |
| CTTGTTTAGCATTCTTGCCG+CGG | + | chr3.4:94377746-94377765 | None:intergenic | 45.0% | |
| GAAGTAGAACAGCAGGTCAA+TGG | - | chr3.4:94379160-94379179 | MS.gene073023:intron | 45.0% | |
| GAGAGTTCTTCAGGGATCTT+TGG | + | chr3.4:94379464-94379483 | None:intergenic | 45.0% | |
| GATCAATGGGGATCCATTCA+AGG | - | chr3.4:94378208-94378227 | MS.gene073023:CDS | 45.0% | |
| GCAAACTGTGCCACATTTCA+AGG | - | chr3.4:94378946-94378965 | MS.gene073023:CDS | 45.0% | |
| GGGATGACATTCTTCCTTGT+AGG | - | chr3.4:94380532-94380551 | MS.gene073023:CDS | 45.0% | |
| GGTATCTGGACTCTTCCAAT+TGG | - | chr3.4:94380207-94380226 | MS.gene073023:CDS | 45.0% | |
| GGTCTCTAAGTGGAACCAAA+AGG | - | chr3.4:94378775-94378794 | MS.gene073023:intron | 45.0% | |
| GTCAGGACTGGATATAAAGC+TGG | - | chr3.4:94378827-94378846 | MS.gene073023:intron | 45.0% | |
| TCAATGGAACTGCTGGTGTT+TGG | - | chr3.4:94379206-94379225 | MS.gene073023:intron | 45.0% | |
| TGACACAAGCTGTGAGAAGA+AGG | + | chr3.4:94380462-94380481 | None:intergenic | 45.0% | |
| TTAAGGCTGAGGTCTCTAAG+TGG | - | chr3.4:94378765-94378784 | MS.gene073023:intron | 45.0% | |
| TTCACAGAAAGGAACACCAG+TGG | - | chr3.4:94377641-94377660 | MS.gene073023:CDS | 45.0% | |
| ! | AACACCAGTGGTGGTGAAAA+TGG | - | chr3.4:94377653-94377672 | MS.gene073023:CDS | 45.0% |
| ! | ACAAAGAAGCATACGGTCCA+CGG | + | chr3.4:94378147-94378166 | None:intergenic | 45.0% |
| ! | CAGGGCCTATGCAACTTTTT+AGG | - | chr3.4:94379575-94379594 | MS.gene073023:intron | 45.0% |
| ! | CTGATGATGAGAGCATACAG+TGG | - | chr3.4:94378738-94378757 | MS.gene073023:intron | 45.0% |
| ! | GTATGCTTCTTTGTTTCGGG+TGG | - | chr3.4:94378153-94378172 | MS.gene073023:CDS | 45.0% |
| ! | TAGGTTTGGTCCAAGCTAGA+TGG | - | chr3.4:94379071-94379090 | MS.gene073023:CDS | 45.0% |
| ! | TTGCCGCGGTTTTTATCTAC+CGG | + | chr3.4:94377732-94377751 | None:intergenic | 45.0% |
| !! | AAAAGGCTGGTTCGTAGACA+GGG | - | chr3.4:94377858-94377877 | MS.gene073023:CDS | 45.0% |
| !! | GTGTCAAATGGATTGGCCAA+GGG | - | chr3.4:94378685-94378704 | MS.gene073023:intron | 45.0% |
| !! | TGTGTCAAATGGATTGGCCA+AGG | - | chr3.4:94378684-94378703 | MS.gene073023:intron | 45.0% |
| !! | TTCGAAAGTGCCTGAATTGG+TGG | + | chr3.4:94378095-94378114 | None:intergenic | 45.0% |
| !! | TTCTGCCTCTGGAACAAACA+TGG | + | chr3.4:94380050-94380069 | None:intergenic | 45.0% |
| ACAGAAAGGAACACCAGTGG+TGG | - | chr3.4:94377644-94377663 | MS.gene073023:CDS | 50.0% | |
| AGGCCGGTAGATAAAAACCG+CGG | - | chr3.4:94377726-94377745 | MS.gene073023:CDS | 50.0% | |
| CAGGGAGTGGCTGTTGAAAA+AGG | - | chr3.4:94377876-94377895 | MS.gene073023:CDS | 50.0% | |
| CTTAAAGCTCATCGTGCCGT+TGG | - | chr3.4:94377783-94377802 | MS.gene073023:CDS | 50.0% | |
| GCTTGGACCAAACCTAGTTC+AGG | + | chr3.4:94379067-94379086 | None:intergenic | 50.0% | |
| TCCAACCATTGAGGTGAGCT+CGG | + | chr3.4:94379303-94379322 | None:intergenic | 50.0% | |
| TGCAGATGCTGCATTTAGGC+CGG | - | chr3.4:94377710-94377729 | MS.gene073023:CDS | 50.0% | |
| ! | ACCAGTGGTGGTGAAAATGG+AGG | - | chr3.4:94377656-94377675 | MS.gene073023:CDS | 50.0% |
| ! | GTGCCGTTGGTTGTGTTACT+TGG | - | chr3.4:94377796-94377815 | MS.gene073023:CDS | 50.0% |
| ! | TCCTCCATTTTCACCACCAC+TGG | + | chr3.4:94377660-94377679 | None:intergenic | 50.0% |
| ! | TTTAACTGCAGGTGTCACCG+TGG | - | chr3.4:94379930-94379949 | MS.gene073023:CDS | 50.0% |
| !! | GAAAAGGCTGGTTCGTAGAC+AGG | - | chr3.4:94377857-94377876 | MS.gene073023:CDS | 50.0% |
| AGCAACACCGCTGGCATTCA+GGG | - | chr3.4:94379557-94379576 | MS.gene073023:intron | 55.0% | |
| CACAGAGGAGCTTCTGACAG+TGG | - | chr3.4:94380337-94380356 | MS.gene073023:CDS | 55.0% | |
| CCAGCCCCCAGATTCTTCTA+GGG | + | chr3.4:94379242-94379261 | None:intergenic | 55.0% | |
| GAAGCATACGGTCCACGGAT+TGG | + | chr3.4:94378142-94378161 | None:intergenic | 55.0% | |
| TCCGAGCTCACCTCAATGGT+TGG | - | chr3.4:94379299-94379318 | MS.gene073023:CDS | 55.0% | |
| TCTATCGGCATCGCTTGGTC+AGG | - | chr3.4:94378810-94378829 | MS.gene073023:intron | 55.0% | |
| ACAGGAAGCAGCAACACCGC+TGG | - | chr3.4:94379548-94379567 | MS.gene073023:intron | 60.0% | |
| CAGCAACACCGCTGGCATTC+AGG | - | chr3.4:94379556-94379575 | MS.gene073023:intron | 60.0% | |
| CCCTAGAAGAATCTGGGGGC+TGG | - | chr3.4:94379239-94379258 | MS.gene073023:CDS | 60.0% | |
| GCATAGGCCCTGAATGCCAG+CGG | + | chr3.4:94379567-94379586 | None:intergenic | 60.0% | |
| GCCAGCCCCCAGATTCTTCT+AGG | + | chr3.4:94379243-94379262 | None:intergenic | 60.0% | |
| GCTGTCCGAGCTCACCTCAA+TGG | - | chr3.4:94379295-94379314 | MS.gene073023:CDS | 60.0% | |
| ! | AGAAGAATCTGGGGGCTGGC+TGG | - | chr3.4:94379243-94379262 | MS.gene073023:CDS | 60.0% |
| !! | GCTGGTTCGTAGACAGGGAG+TGG | - | chr3.4:94377863-94377882 | MS.gene073023:CDS | 60.0% |
| CGGCATCGCTTGGTCAGGAC+TGG | - | chr3.4:94378815-94378834 | MS.gene073023:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 94377600 | 94380585 | 94377600 | ID=MS.gene073023 |
| chr3.4 | mRNA | 94377600 | 94380585 | 94377600 | ID=MS.gene073023.t1;Parent=MS.gene073023 |
| chr3.4 | exon | 94379881 | 94380585 | 94379881 | ID=MS.gene073023.t1.exon1;Parent=MS.gene073023.t1 |
| chr3.4 | CDS | 94379881 | 94380585 | 94379881 | ID=cds.MS.gene073023.t1;Parent=MS.gene073023.t1 |
| chr3.4 | exon | 94379218 | 94379526 | 94379218 | ID=MS.gene073023.t1.exon2;Parent=MS.gene073023.t1 |
| chr3.4 | CDS | 94379218 | 94379526 | 94379218 | ID=cds.MS.gene073023.t1;Parent=MS.gene073023.t1 |
| chr3.4 | exon | 94378837 | 94379127 | 94378837 | ID=MS.gene073023.t1.exon3;Parent=MS.gene073023.t1 |
| chr3.4 | CDS | 94378837 | 94379127 | 94378837 | ID=cds.MS.gene073023.t1;Parent=MS.gene073023.t1 |
| chr3.4 | exon | 94378558 | 94378671 | 94378558 | ID=MS.gene073023.t1.exon4;Parent=MS.gene073023.t1 |
| chr3.4 | CDS | 94378558 | 94378671 | 94378558 | ID=cds.MS.gene073023.t1;Parent=MS.gene073023.t1 |
| chr3.4 | exon | 94377600 | 94378244 | 94377600 | ID=MS.gene073023.t1.exon5;Parent=MS.gene073023.t1 |
| chr3.4 | CDS | 94377600 | 94378244 | 94377600 | ID=cds.MS.gene073023.t1;Parent=MS.gene073023.t1 |
| Gene Sequence |
| Protein sequence |
