Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40373.t1 | XP_003603555.1 | 99 | 630 | 6 | 0 | 1 | 630 | 1 | 630 | 0.00E+00 | 1265.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40373.t1 | Q9SB75 | 79.7 | 632 | 122 | 4 | 1 | 627 | 1 | 631 | 7.9e-298 | 1023.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40373.t1 | G7J2T7 | 99.0 | 630 | 6 | 0 | 1 | 630 | 1 | 630 | 0.0e+00 | 1265.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene40373 | MS.gene022823 | PPI |
| MS.gene40373 | MS.gene32853 | PPI |
| MS.gene40373 | MS.gene37459 | PPI |
| MS.gene40373 | MS.gene015052 | PPI |
| MS.gene40373 | MS.gene012848 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40373.t1 | MTR_3g109040 | 99.048 | 630 | 6 | 0 | 1 | 630 | 1 | 630 | 0.0 | 1289 |
| MS.gene40373.t1 | MTR_3g109040 | 99.031 | 619 | 6 | 0 | 12 | 630 | 1 | 619 | 0.0 | 1265 |
| MS.gene40373.t1 | MTR_4g006010 | 73.913 | 644 | 150 | 6 | 1 | 628 | 1 | 642 | 0.0 | 975 |
| MS.gene40373.t1 | MTR_6g007807 | 67.267 | 611 | 180 | 7 | 19 | 622 | 7 | 604 | 0.0 | 847 |
| MS.gene40373.t1 | MTR_3g103500 | 65.258 | 639 | 190 | 8 | 1 | 619 | 1 | 627 | 0.0 | 847 |
| MS.gene40373.t1 | MTR_8g012320 | 59.908 | 651 | 230 | 7 | 2 | 629 | 4 | 646 | 0.0 | 758 |
| MS.gene40373.t1 | MTR_3g103500 | 63.765 | 494 | 154 | 7 | 1 | 474 | 1 | 489 | 0.0 | 633 |
| MS.gene40373.t1 | MTR_7g103590 | 46.593 | 455 | 239 | 3 | 155 | 606 | 28 | 481 | 1.92e-141 | 422 |
| MS.gene40373.t1 | MTR_1g492700 | 50.125 | 401 | 199 | 1 | 207 | 606 | 79 | 479 | 6.17e-140 | 418 |
| MS.gene40373.t1 | MTR_1g061510 | 45.495 | 455 | 244 | 3 | 155 | 606 | 19 | 472 | 1.84e-139 | 417 |
| MS.gene40373.t1 | MTR_1g061340 | 45.374 | 454 | 246 | 2 | 155 | 606 | 19 | 472 | 3.13e-139 | 416 |
| MS.gene40373.t1 | MTR_1g061270 | 47.575 | 433 | 223 | 3 | 155 | 584 | 19 | 450 | 9.73e-139 | 415 |
| MS.gene40373.t1 | MTR_1g061280 | 47.100 | 431 | 224 | 3 | 155 | 582 | 19 | 448 | 6.42e-137 | 410 |
| MS.gene40373.t1 | MTR_7g101950 | 45.517 | 435 | 230 | 3 | 154 | 584 | 24 | 455 | 7.29e-135 | 405 |
| MS.gene40373.t1 | MTR_4g055520 | 45.727 | 433 | 231 | 3 | 155 | 584 | 28 | 459 | 2.46e-134 | 403 |
| MS.gene40373.t1 | MTR_4g055520 | 45.727 | 433 | 231 | 3 | 155 | 584 | 28 | 459 | 1.93e-133 | 402 |
| MS.gene40373.t1 | MTR_4g055520 | 49.003 | 351 | 178 | 1 | 235 | 584 | 29 | 379 | 4.96e-123 | 372 |
| MS.gene40373.t1 | MTR_4g074380 | 53.093 | 194 | 32 | 3 | 42 | 235 | 7 | 141 | 1.09e-49 | 171 |
| MS.gene40373.t1 | MTR_4g108050 | 77.966 | 59 | 13 | 0 | 42 | 100 | 7 | 65 | 6.88e-23 | 93.2 |
| MS.gene40373.t1 | MTR_4g116020 | 80.769 | 52 | 10 | 0 | 189 | 240 | 59 | 110 | 3.82e-20 | 86.7 |
| MS.gene40373.t1 | MTR_4g116020 | 85.106 | 47 | 7 | 0 | 189 | 235 | 34 | 80 | 3.69e-19 | 83.6 |
| MS.gene40373.t1 | MTR_4g116020 | 85.106 | 47 | 7 | 0 | 189 | 235 | 59 | 105 | 1.09e-18 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40373.t1 | AT4G31590 | 79.338 | 634 | 125 | 4 | 1 | 629 | 1 | 633 | 0.0 | 1031 |
| MS.gene40373.t1 | AT2G24630 | 76.667 | 630 | 141 | 4 | 1 | 625 | 1 | 629 | 0.0 | 1012 |
| MS.gene40373.t1 | AT2G24630 | 76.667 | 630 | 141 | 4 | 1 | 625 | 1 | 629 | 0.0 | 1012 |
| MS.gene40373.t1 | AT3G28180 | 68.637 | 609 | 163 | 7 | 21 | 622 | 6 | 593 | 0.0 | 861 |
| MS.gene40373.t1 | AT4G07960 | 65.231 | 627 | 191 | 7 | 1 | 604 | 1 | 623 | 0.0 | 810 |
| MS.gene40373.t1 | AT4G07960 | 65.231 | 627 | 191 | 7 | 1 | 604 | 1 | 623 | 0.0 | 810 |
| MS.gene40373.t1 | AT3G07330 | 61.637 | 623 | 231 | 4 | 6 | 626 | 8 | 624 | 0.0 | 780 |
| MS.gene40373.t1 | AT3G07330 | 61.637 | 623 | 231 | 4 | 6 | 626 | 8 | 624 | 0.0 | 780 |
| MS.gene40373.t1 | AT5G03760 | 48.244 | 427 | 217 | 3 | 159 | 582 | 33 | 458 | 3.71e-139 | 416 |
| MS.gene40373.t1 | AT1G23480 | 45.217 | 460 | 248 | 3 | 150 | 606 | 47 | 505 | 1.12e-138 | 416 |
| MS.gene40373.t1 | AT1G23480 | 45.217 | 460 | 248 | 3 | 150 | 606 | 47 | 505 | 1.12e-138 | 416 |
| MS.gene40373.t1 | AT1G23480 | 49.127 | 401 | 203 | 1 | 207 | 606 | 33 | 433 | 1.72e-136 | 408 |
| MS.gene40373.t1 | AT2G35650 | 46.697 | 439 | 230 | 3 | 155 | 590 | 51 | 488 | 2.26e-136 | 410 |
| MS.gene40373.t1 | AT5G22740 | 45.872 | 436 | 232 | 3 | 155 | 587 | 29 | 463 | 1.30e-135 | 407 |
| MS.gene40373.t1 | AT4G13410 | 43.506 | 462 | 247 | 3 | 155 | 608 | 43 | 498 | 6.52e-135 | 405 |
| MS.gene40373.t1 | AT2G35650 | 50.526 | 380 | 187 | 1 | 212 | 590 | 37 | 416 | 1.95e-134 | 402 |
| MS.gene40373.t1 | AT2G35650 | 50.526 | 380 | 187 | 1 | 212 | 590 | 37 | 416 | 1.95e-134 | 402 |
| MS.gene40373.t1 | AT1G24070 | 44.495 | 436 | 238 | 3 | 158 | 590 | 57 | 491 | 1.65e-132 | 400 |
| MS.gene40373.t1 | AT5G16190 | 45.372 | 443 | 240 | 2 | 155 | 595 | 6 | 448 | 2.71e-131 | 393 |
| MS.gene40373.t1 | AT5G16190 | 45.372 | 443 | 240 | 2 | 155 | 595 | 6 | 448 | 9.06e-131 | 394 |
| MS.gene40373.t1 | AT3G56000 | 46.774 | 434 | 224 | 5 | 159 | 585 | 26 | 459 | 3.01e-130 | 394 |
| MS.gene40373.t1 | AT5G16190 | 48.571 | 385 | 197 | 1 | 212 | 595 | 3 | 387 | 1.38e-127 | 384 |
| MS.gene40373.t1 | AT5G16190 | 42.227 | 476 | 240 | 3 | 155 | 595 | 6 | 481 | 1.06e-123 | 377 |
| MS.gene40373.t1 | AT4G16590 | 41.834 | 447 | 224 | 5 | 147 | 591 | 49 | 461 | 3.60e-113 | 349 |
| MS.gene40373.t1 | AT1G23480 | 48.529 | 340 | 174 | 1 | 268 | 606 | 21 | 360 | 3.87e-111 | 340 |
| MS.gene40373.t1 | AT2G35650 | 48.447 | 322 | 165 | 1 | 270 | 590 | 9 | 330 | 5.89e-107 | 328 |
| MS.gene40373.t1 | AT4G13410 | 45.833 | 336 | 181 | 1 | 274 | 608 | 2 | 337 | 2.03e-106 | 327 |
| MS.gene40373.t1 | AT1G24070 | 48.276 | 319 | 162 | 2 | 158 | 474 | 57 | 374 | 2.07e-102 | 317 |
| MS.gene40373.t1 | AT4G13410 | 47.706 | 327 | 158 | 2 | 155 | 474 | 43 | 363 | 6.50e-101 | 313 |
Find 0 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGTTTTTGTTAATTTCTT+TGG | + | 24208:17440-17459 | MS.gene40373:CDS | 15.0% |
| !! | ACAATAAAAGGAAAAGATTT+AGG | - | 24208:19653-19672 | MS.gene40373:intergenic | 20.0% |
| !! | CTTAATTGTGTTTAAATTTC+AGG | + | 24208:19009-19028 | MS.gene40373:intron | 20.0% |
| !! | TATAAAATGTTGTCAAATAG+CGG | + | 24208:19284-19303 | MS.gene40373:intron | 20.0% |
| !!! | AATAAAATTTAAGACCCTTT+AGG | - | 24208:19429-19448 | MS.gene40373:intergenic | 20.0% |
| !!! | CTTAAATTTTATTTAACTGC+AGG | + | 24208:19436-19455 | MS.gene40373:intron | 20.0% |
| ! | AAATTTAAGAGAGTTCTTCA+GGG | - | 24208:18989-19008 | MS.gene40373:intergenic | 25.0% |
| ! | AAATTTAATGCAATGGTATC+TGG | + | 24208:19710-19729 | MS.gene40373:CDS | 25.0% |
| ! | ACTATTACATTGAAACTTAC+TGG | - | 24208:17889-17908 | MS.gene40373:intergenic | 25.0% |
| ! | AGATTGCAGAAAATTCTTAA+GGG | - | 24208:18018-18037 | MS.gene40373:intergenic | 25.0% |
| ! | ATTAAATTTAGTCACAGACA+TGG | - | 24208:19699-19718 | MS.gene40373:intergenic | 25.0% |
| ! | TACTGAGTATTTGCAATTAT+TGG | + | 24208:19388-19407 | MS.gene40373:intron | 25.0% |
| ! | TATATTATGTACTGCCTAAA+GGG | + | 24208:19412-19431 | MS.gene40373:intron | 25.0% |
| ! | TATTATGCACTATGAAAGAA+AGG | - | 24208:18913-18932 | MS.gene40373:intergenic | 25.0% |
| ! | TCAATGACATTGACAAAATA+TGG | + | 24208:18111-18130 | MS.gene40373:intron | 25.0% |
| ! | TGTGACTAAATTTAATGCAA+TGG | + | 24208:19703-19722 | MS.gene40373:CDS | 25.0% |
| ! | TTATATTATGTACTGCCTAA+AGG | + | 24208:19411-19430 | MS.gene40373:intron | 25.0% |
| !! | CTTAATTTCTTTGGTTTCAA+TGG | + | 24208:18707-18726 | MS.gene40373:CDS | 25.0% |
| !!! | GGAAGCATAAATTTATGTTT+TGG | - | 24208:18652-18671 | MS.gene40373:intergenic | 25.0% |
| AAATAAGGTGAAGGAGTAAA+AGG | - | 24208:19525-19544 | MS.gene40373:intergenic | 30.0% | |
| AATAAGGTGAAGGAGTAAAA+GGG | - | 24208:19524-19543 | MS.gene40373:intergenic | 30.0% | |
| AATCTTCACAACTGAGAAAT+TGG | - | 24208:17202-17221 | MS.gene40373:intergenic | 30.0% | |
| AGATAAATTTCCAACCATTG+AGG | - | 24208:18829-18848 | MS.gene40373:intergenic | 30.0% | |
| AGGAAGGATTATGCAAAATA+AGG | - | 24208:19540-19559 | MS.gene40373:intergenic | 30.0% | |
| AGGGAATCAACATAATCTAT+CGG | + | 24208:18312-18331 | MS.gene40373:CDS | 30.0% | |
| ATCTGTATGCATTTATCCAA+TGG | + | 24208:17764-17783 | MS.gene40373:CDS | 30.0% | |
| ATCTTCACAACTGAGAAATT+GGG | - | 24208:17201-17220 | MS.gene40373:intergenic | 30.0% | |
| CAACTTGAAAAATCCAATCT+TGG | - | 24208:17126-17145 | MS.gene40373:intergenic | 30.0% | |
| GAAATTTAAGAGAGTTCTTC+AGG | - | 24208:18990-19009 | MS.gene40373:intergenic | 30.0% | |
| GAGATTGCAGAAAATTCTTA+AGG | - | 24208:18019-18038 | MS.gene40373:intergenic | 30.0% | |
| GATTATGCAAAATAAGGTGA+AGG | - | 24208:19534-19553 | MS.gene40373:intergenic | 30.0% | |
| TAAAAACCTCATAGCAAAAC+TGG | - | 24208:17848-17867 | MS.gene40373:intergenic | 30.0% | |
| TAAAACAACACAGCATCAAA+TGG | - | 24208:18067-18086 | MS.gene40373:intergenic | 30.0% | |
| TATCTTCCTAAATGATGTCA+AGG | + | 24208:18844-18863 | MS.gene40373:CDS | 30.0% | |
| TTCTCAGTTGTGAAGATTAA+TGG | + | 24208:17204-17223 | MS.gene40373:CDS | 30.0% | |
| TTGGTTAGTAACTGTTCTTT+GGG | + | 24208:17332-17351 | MS.gene40373:CDS | 30.0% | |
| ! | ACAGTTTGCTTAAGAAAATC+AGG | - | 24208:18452-18471 | MS.gene40373:intergenic | 30.0% |
| ! | ATGCATTTATCCAATGGTTT+TGG | + | 24208:17770-17789 | MS.gene40373:CDS | 30.0% |
| ! | ATTAAGTTTGCTTTCTTCCA+CGG | - | 24208:19467-19486 | MS.gene40373:intergenic | 30.0% |
| ! | CAGTTTGCTTAAGAAAATCA+GGG | - | 24208:18451-18470 | MS.gene40373:intergenic | 30.0% |
| ! | GTTAATTTCTTTGGCTGTTT+TGG | + | 24208:17449-17468 | MS.gene40373:CDS | 30.0% |
| !! | GTTTTGGATCAAATTCAAGA+AGG | + | 24208:17692-17711 | MS.gene40373:CDS | 30.0% |
| !! | TGCAAATGACTTGTTATTAC+AGG | + | 24208:18553-18572 | MS.gene40373:intron | 30.0% |
| !!! | AGATTATGTTGATTCCCTTT+TGG | - | 24208:18310-18329 | MS.gene40373:intergenic | 30.0% |
| !!! | CAAGATTGGATTTTTCAAGT+TGG | + | 24208:17124-17143 | MS.gene40373:CDS | 30.0% |
| !!! | CTTTTGTTGTTCTATTGACT+CGG | - | 24208:19831-19850 | MS.gene40373:intergenic | 30.0% |
| !!! | TTCTGCTATTTTTTCTGCTA+AGG | + | 24208:19486-19505 | MS.gene40373:CDS | 30.0% |
| AAAACTGGAATGCAGAAGTT+CGG | - | 24208:17833-17852 | MS.gene40372:intergenic | 35.0% | |
| AAAGGAAAAGATTTAGGTGC+AGG | - | 24208:19647-19666 | MS.gene40373:intergenic | 35.0% | |
| AAGGTTAAGCCAATGATCAA+TGG | + | 24208:17711-17730 | MS.gene40373:CDS | 35.0% | |
| AATTGGGAAGCTCTTATGAA+TGG | + | 24208:19741-19760 | MS.gene40373:CDS | 35.0% | |
| AATTTCTGCAGTGTGTCAAA+TGG | + | 24208:18190-18209 | MS.gene40373:CDS | 35.0% | |
| ACAGAAGTTCGATTTCATGA+AGG | - | 24208:18951-18970 | MS.gene40373:intergenic | 35.0% | |
| ACATAGCAGATCAACCATAA+AGG | - | 24208:19593-19612 | MS.gene40373:intergenic | 35.0% | |
| ACCAAGCAACATAAACCATA+TGG | - | 24208:17563-17582 | MS.gene40373:intergenic | 35.0% | |
| ACCTCAGATTTCAAAATTGC+TGG | - | 24208:19127-19146 | MS.gene40373:intergenic | 35.0% | |
| AGAATGCTAAACAAGTTAGG+TGG | + | 24208:17268-17287 | MS.gene40373:CDS | 35.0% | |
| AGGAGGTAAGGAACAATAAA+AGG | - | 24208:19665-19684 | MS.gene40373:intergenic | 35.0% | |
| AGGTTAAGCCAATGATCAAT+GGG | + | 24208:17712-17731 | MS.gene40373:CDS | 35.0% | |
| AGTATGAGGAATGTGCAAAT+TGG | - | 24208:17520-17539 | MS.gene40373:intergenic | 35.0% | |
| ATACTTCTGATTTCCAAAGG+TGG | + | 24208:17535-17554 | MS.gene40373:CDS | 35.0% | |
| ATTCATAAGAGCTTCCCAAT+TGG | - | 24208:19742-19761 | MS.gene40373:intergenic | 35.0% | |
| CTCATACTTCTGATTTCCAA+AGG | + | 24208:17532-17551 | MS.gene40373:CDS | 35.0% | |
| CTTCACTTAACCTTGAAATG+TGG | - | 24208:18476-18495 | MS.gene40373:intergenic | 35.0% | |
| CTTGGTTAGTAACTGTTCTT+TGG | + | 24208:17331-17350 | MS.gene40373:CDS | 35.0% | |
| GAACAAACATGGTTAAAGGA+AGG | - | 24208:19556-19575 | MS.gene40373:intergenic | 35.0% | |
| GAACAACAAAAGATTCACAG+AGG | + | 24208:19839-19858 | MS.gene40373:CDS | 35.0% | |
| GAATGCTAAACAAGTTAGGT+GGG | + | 24208:17269-17288 | MS.gene40373:CDS | 35.0% | |
| GAGAACAACTGTAGAAGATA+TGG | + | 24208:18784-18803 | MS.gene40373:CDS | 35.0% | |
| GAGCATACAGTGGTTAATTA+AGG | + | 24208:18265-18284 | MS.gene40373:CDS | 35.0% | |
| GCAAGAATGCTAAACAAGTT+AGG | + | 24208:17265-17284 | MS.gene40373:CDS | 35.0% | |
| GGAATTTGAACCAAAACCAT+TGG | - | 24208:17783-17802 | MS.gene40373:intergenic | 35.0% | |
| TAACCAAGTAACACAACCAA+CGG | - | 24208:17319-17338 | MS.gene40373:intergenic | 35.0% | |
| TCAACATCATCAACCTTGAA+TGG | - | 24208:17741-17760 | MS.gene40373:intergenic | 35.0% | |
| TCCATATGGTTTATGTTGCT+TGG | + | 24208:17559-17578 | MS.gene40373:CDS | 35.0% | |
| TCTTCACAACTGAGAAATTG+GGG | - | 24208:17200-17219 | MS.gene40373:intergenic | 35.0% | |
| TGAGCAATGTTGTCAAATAG+CGG | + | 24208:19204-19223 | MS.gene40373:intron | 35.0% | |
| TGATCACCTTGACATCATTT+AGG | - | 24208:18853-18872 | MS.gene40373:intergenic | 35.0% | |
| TGCTTAAGAAAATCAGGGTT+TGG | - | 24208:18446-18465 | MS.gene40373:intergenic | 35.0% | |
| TGTTGAGTTACAGCAATTGA+AGG | + | 24208:19880-19899 | MS.gene40373:CDS | 35.0% | |
| TTAAGGATTGACATGCATAC+AGG | - | 24208:19617-19636 | MS.gene40373:intergenic | 35.0% | |
| TTACAGGATAATCCTGAACT+AGG | + | 24208:18569-18588 | MS.gene40373:intron | 35.0% | |
| TTGCAGATCGCAAAAAATAG+TGG | - | 24208:19355-19374 | MS.gene40373:intergenic | 35.0% | |
| TTTAACCATGTTTGTTCCAG+AGG | + | 24208:19559-19578 | MS.gene40373:CDS | 35.0% | |
| ! | ACATGGTGTTTTCAAAAAGG+AGG | - | 24208:19682-19701 | MS.gene40373:intergenic | 35.0% |
| ! | ACTTTCAAGGTTGGCATTTT+GGG | + | 24208:17490-17509 | MS.gene40373:CDS | 35.0% |
| ! | CAGACATGGTGTTTTCAAAA+AGG | - | 24208:19685-19704 | MS.gene40373:intergenic | 35.0% |
| ! | CTTTGGAAATCAGAAGTATG+AGG | - | 24208:17534-17553 | MS.gene40373:intergenic | 35.0% |
| ! | GCATTTGTGTTTCTGAGTTT+AGG | - | 24208:18041-18060 | MS.gene40373:intergenic | 35.0% |
| ! | GGGGTGTTTCTTAATTTCTT+TGG | + | 24208:18698-18717 | MS.gene40373:CDS | 35.0% |
| ! | GTGTTTTCAAAAAGGAGGTA+AGG | - | 24208:19677-19696 | MS.gene40373:intergenic | 35.0% |
| ! | TACTTTCAAGGTTGGCATTT+TGG | + | 24208:17489-17508 | MS.gene40373:CDS | 35.0% |
| ! | TAGATGGTCTTTTGTGAACA+AGG | + | 24208:18604-18623 | MS.gene40373:CDS | 35.0% |
| ! | TCTGGAACAAACATGGTTAA+AGG | - | 24208:19560-19579 | MS.gene40373:intergenic | 35.0% |
| ! | TGCACAAATTGACTTTATGC+AGG | + | 24208:18154-18173 | MS.gene40373:intron | 35.0% |
| ! | TTGTTGCTTACTTTCAAGGT+TGG | + | 24208:17481-17500 | MS.gene40373:CDS | 35.0% |
| ! | TTTGTTTCTTATCCAATCCG+TGG | + | 24208:17644-17663 | MS.gene40373:CDS | 35.0% |
| !! | TGCTTGGTGCTATTAAGAAA+AGG | + | 24208:17358-17377 | MS.gene40373:CDS | 35.0% |
| !! | TTCAAGGTTGATGATGTTGA+AGG | + | 24208:17741-17760 | MS.gene40373:CDS | 35.0% |
| !!! | GATTGGATTTTTCAAGTTGG+TGG | + | 24208:17127-17146 | MS.gene40373:CDS | 35.0% |
| !!! | TCCAGCAATTTTGAAATCTG+AGG | + | 24208:19123-19142 | MS.gene40373:CDS | 35.0% |
| !!! | TTTTTCAAGTTGGTGGATGA+AGG | + | 24208:17134-17153 | MS.gene40373:CDS | 35.0% |
| AAACCATATGGAACCACCTT+TGG | - | 24208:17551-17570 | MS.gene40372:intergenic | 40.0% | |
| AAATCCAATCTTGGAGCCAT+AGG | - | 24208:17117-17136 | MS.gene40373:intergenic | 40.0% | |
| AAGTAGAACAGCAGGTCAAT+GGG | + | 24208:18678-18697 | MS.gene40373:CDS | 40.0% | |
| AATGGATCCCCATTGATCAT+TGG | - | 24208:17723-17742 | MS.gene40373:intergenic | 40.0% | |
| ACAGTGGTTAATTAAGGCTG+AGG | + | 24208:18271-18290 | MS.gene40373:CDS | 40.0% | |
| ACCTCTTTCTCATTGCACAT+TGG | - | 24208:17804-17823 | MS.gene40373:intergenic | 40.0% | |
| ATCAAAGCCCTAGAAGAATC+TGG | + | 24208:18749-18768 | MS.gene40373:CDS | 40.0% | |
| CACAGCCTAAAAAGTTGCAT+AGG | - | 24208:19100-19119 | MS.gene40373:intergenic | 40.0% | |
| CCTGCTGTTCTACTTCAAAA+TGG | - | 24208:18673-18692 | MS.gene40373:intergenic | 40.0% | |
| CTGAGTCATATGAAGCTTAC+AGG | + | 24208:19047-19066 | MS.gene40373:CDS | 40.0% | |
| CTGTAAGCTTCATATGACTC+AGG | - | 24208:19049-19068 | MS.gene40373:intergenic | 40.0% | |
| GGATAATCCTGAACTAGGTT+TGG | + | 24208:18574-18593 | MS.gene40373:intron | 40.0% | |
| GGTTAAGCCAATGATCAATG+GGG | + | 24208:17713-17732 | MS.gene40373:CDS | 40.0% | |
| GTATCTGGACTCTTCCAATT+GGG | + | 24208:19725-19744 | MS.gene40373:CDS | 40.0% | |
| GTCTCTAAGTGGAACCAAAA+GGG | + | 24208:18293-18312 | MS.gene40373:CDS | 40.0% | |
| TAGGTGCAGGAAGAATGTTA+AGG | - | 24208:19634-19653 | MS.gene40373:intergenic | 40.0% | |
| TATGTTGTAGAGCTATAGCG+TGG | - | 24208:19316-19335 | MS.gene40373:intergenic | 40.0% | |
| TCAAAGCCCTAGAAGAATCT+GGG | + | 24208:18750-18769 | MS.gene40373:CDS | 40.0% | |
| TCACAAAAGACCATCTAGCT+TGG | - | 24208:18601-18620 | MS.gene40373:intergenic | 40.0% | |
| TCCAATGTGCAATGAGAAAG+AGG | + | 24208:17800-17819 | MS.gene40373:CDS | 40.0% | |
| TGAATCAGTAAACGATCCCT+TGG | - | 24208:18221-18240 | MS.gene40373:intergenic | 40.0% | |
| TGGATGAAGGATTCACAGAA+AGG | + | 24208:17147-17166 | MS.gene40373:CDS | 40.0% | |
| TGGATTGTCACAAAGAAAGC+TGG | + | 24208:19761-19780 | MS.gene40373:CDS | 40.0% | |
| TTGTCACAAAGAAAGCTGGA+AGG | + | 24208:19765-19784 | MS.gene40373:CDS | 40.0% | |
| TTTCCAAAGGTGGTTCCATA+TGG | + | 24208:17545-17564 | MS.gene40373:CDS | 40.0% | |
| ! | ACCCGAAACAAAGAAGCATA+CGG | - | 24208:17671-17690 | MS.gene40373:intergenic | 40.0% |
| ! | ACCGTATGCTTCTTTGTTTC+GGG | + | 24208:17667-17686 | MS.gene40373:CDS | 40.0% |
| ! | GACCGTATGCTTCTTTGTTT+CGG | + | 24208:17666-17685 | MS.gene40373:CDS | 40.0% |
| ! | GAGGTTGTTGCTTACTTTCA+AGG | + | 24208:17477-17496 | MS.gene40373:CDS | 40.0% |
| ! | TTTGGTTTCAATGGAACTGC+TGG | + | 24208:18716-18735 | MS.gene40373:CDS | 40.0% |
| !! | AACTTCGAAAGTGCCTGAAT+TGG | - | 24208:17615-17634 | MS.gene40373:intergenic | 40.0% |
| !! | ACTGTTCTTTGGGATTTGCT+TGG | + | 24208:17342-17361 | MS.gene40373:CDS | 40.0% |
| !! | TGCATTCCAGTTTTGCTATG+AGG | + | 24208:17839-17858 | MS.gene40373:intron | 40.0% |
| !! | TGGTGCTATTAAGAAAAGGC+TGG | + | 24208:17362-17381 | MS.gene40373:CDS | 40.0% |
| !! | TTCTTTGTTTCGGGTGGTTT+TGG | + | 24208:17676-17695 | MS.gene40373:CDS | 40.0% |
| !!! | CCATTTTGAAGTAGAACAGC+AGG | + | 24208:18670-18689 | MS.gene40373:CDS | 40.0% |
| !!! | TTTGGCTGTTTTGGCTTTTG+AGG | + | 24208:17458-17477 | MS.gene40373:CDS | 40.0% |
| AAAGCCCTAGAAGAATCTGG+GGG | + | 24208:18752-18771 | MS.gene40373:CDS | 45.0% | |
| AGGGAGTGGCTGTTGAAAAA+GGG | + | 24208:17394-17413 | MS.gene40373:CDS | 45.0% | |
| AGGTGAAGGAGTAAAAGGGA+AGG | - | 24208:19520-19539 | MS.gene40373:intergenic | 45.0% | |
| AGTAGAACAGCAGGTCAATG+GGG | + | 24208:18679-18698 | MS.gene40373:CDS | 45.0% | |
| ATGGTGCAGATGCTGCATTT+AGG | + | 24208:17223-17242 | MS.gene40373:CDS | 45.0% | |
| CAAAGCCCTAGAAGAATCTG+GGG | + | 24208:18751-18770 | MS.gene40373:CDS | 45.0% | |
| CAGAGGCAGAACTTCCTTTA+TGG | + | 24208:19576-19595 | MS.gene40373:CDS | 45.0% | |
| CATAAAGGAAGTTCTGCCTC+TGG | - | 24208:19578-19597 | MS.gene40373:intergenic | 45.0% | |
| CATAATCTATCGGCATCGCT+TGG | + | 24208:18322-18341 | MS.gene40373:CDS | 45.0% | |
| CTACATTGCTCCACCAATTC+AGG | + | 24208:17599-17618 | MS.gene40373:CDS | 45.0% | |
| CTGCAGTGTGTCAAATGGAT+TGG | + | 24208:18195-18214 | MS.gene40373:CDS | 45.0% | |
| CTTGTTTAGCATTCTTGCCG+CGG | - | 24208:17263-17282 | MS.gene40373:intergenic | 45.0% | |
| GAAGTAGAACAGCAGGTCAA+TGG | + | 24208:18677-18696 | MS.gene40373:CDS | 45.0% | |
| GAGAGTTCTTCAGGGATCTT+TGG | - | 24208:18981-19000 | MS.gene40373:intergenic | 45.0% | |
| GATCAATGGGGATCCATTCA+AGG | + | 24208:17725-17744 | MS.gene40373:CDS | 45.0% | |
| GCAAACTGTGCCACATTTCA+AGG | + | 24208:18463-18482 | MS.gene40373:CDS | 45.0% | |
| GGTATCTGGACTCTTCCAAT+TGG | + | 24208:19724-19743 | MS.gene40373:CDS | 45.0% | |
| GGTCTCTAAGTGGAACCAAA+AGG | + | 24208:18292-18311 | MS.gene40373:CDS | 45.0% | |
| GTCAGGACTGGATATAAAGC+TGG | + | 24208:18344-18363 | MS.gene40373:CDS | 45.0% | |
| TCAATGGAACTGCTGGTGTT+TGG | + | 24208:18723-18742 | MS.gene40373:CDS | 45.0% | |
| TTAAGGCTGAGGTCTCTAAG+TGG | + | 24208:18282-18301 | MS.gene40373:CDS | 45.0% | |
| TTCACAGAAAGGAACACCAG+TGG | + | 24208:17158-17177 | MS.gene40373:CDS | 45.0% | |
| ! | AACACCAGTGGTGGTGAAAA+TGG | + | 24208:17170-17189 | MS.gene40373:CDS | 45.0% |
| ! | ACAAAGAAGCATACGGTCCA+CGG | - | 24208:17664-17683 | MS.gene40373:intergenic | 45.0% |
| ! | CAGGGCCTATGCAACTTTTT+AGG | + | 24208:19092-19111 | MS.gene40373:CDS | 45.0% |
| ! | CTGATGATGAGAGCATACAG+TGG | + | 24208:18255-18274 | MS.gene40373:CDS | 45.0% |
| ! | GTATGCTTCTTTGTTTCGGG+TGG | + | 24208:17670-17689 | MS.gene40373:CDS | 45.0% |
| ! | TAGGTTTGGTCCAAGCTAGA+TGG | + | 24208:18588-18607 | MS.gene40373:CDS | 45.0% |
| ! | TTGCCGCGGTTTTTATCTAC+CGG | - | 24208:17249-17268 | MS.gene40373:intergenic | 45.0% |
| !! | AAAAGGCTGGTTCGTAGACA+GGG | + | 24208:17375-17394 | MS.gene40373:CDS | 45.0% |
| !! | GTGTCAAATGGATTGGCCAA+GGG | + | 24208:18202-18221 | MS.gene40373:CDS | 45.0% |
| !! | TGTGTCAAATGGATTGGCCA+AGG | + | 24208:18201-18220 | MS.gene40373:CDS | 45.0% |
| !! | TTCGAAAGTGCCTGAATTGG+TGG | - | 24208:17612-17631 | MS.gene40373:intergenic | 45.0% |
| !! | TTCTGCCTCTGGAACAAACA+TGG | - | 24208:19567-19586 | MS.gene40373:intergenic | 45.0% |
| ACAGAAAGGAACACCAGTGG+TGG | + | 24208:17161-17180 | MS.gene40373:CDS | 50.0% | |
| AGGCCGGTAGATAAAAACCG+CGG | + | 24208:17243-17262 | MS.gene40373:CDS | 50.0% | |
| CAGGGAGTGGCTGTTGAAAA+AGG | + | 24208:17393-17412 | MS.gene40373:CDS | 50.0% | |
| CTTAAAGCTCATCGTGCCGT+TGG | + | 24208:17300-17319 | MS.gene40373:CDS | 50.0% | |
| GCTTGGACCAAACCTAGTTC+AGG | - | 24208:18584-18603 | MS.gene40373:intergenic | 50.0% | |
| TCCAACCATTGAGGTGAGCT+CGG | - | 24208:18820-18839 | MS.gene40373:intergenic | 50.0% | |
| TGCAGATGCTGCATTTAGGC+CGG | + | 24208:17227-17246 | MS.gene40373:CDS | 50.0% | |
| ! | ACCAGTGGTGGTGAAAATGG+AGG | + | 24208:17173-17192 | MS.gene40373:CDS | 50.0% |
| ! | GTGCCGTTGGTTGTGTTACT+TGG | + | 24208:17313-17332 | MS.gene40373:CDS | 50.0% |
| ! | TCCTCCATTTTCACCACCAC+TGG | - | 24208:17177-17196 | MS.gene40373:intergenic | 50.0% |
| ! | TTTAACTGCAGGTGTCACCG+TGG | + | 24208:19447-19466 | MS.gene40373:intron | 50.0% |
| !! | GAAAAGGCTGGTTCGTAGAC+AGG | + | 24208:17374-17393 | MS.gene40373:CDS | 50.0% |
| AGCAACACCGCTGGCATTCA+GGG | + | 24208:19074-19093 | MS.gene40373:CDS | 55.0% | |
| CACAGAGGAGCTTCTGACAG+TGG | + | 24208:19854-19873 | MS.gene40373:CDS | 55.0% | |
| CCAGCCCCCAGATTCTTCTA+GGG | - | 24208:18759-18778 | MS.gene40373:intergenic | 55.0% | |
| GAAGCATACGGTCCACGGAT+TGG | - | 24208:17659-17678 | MS.gene40373:intergenic | 55.0% | |
| TCCGAGCTCACCTCAATGGT+TGG | + | 24208:18816-18835 | MS.gene40373:CDS | 55.0% | |
| TCTATCGGCATCGCTTGGTC+AGG | + | 24208:18327-18346 | MS.gene40373:CDS | 55.0% | |
| ACAGGAAGCAGCAACACCGC+TGG | + | 24208:19065-19084 | MS.gene40373:CDS | 60.0% | |
| CAGCAACACCGCTGGCATTC+AGG | + | 24208:19073-19092 | MS.gene40373:CDS | 60.0% | |
| CCCTAGAAGAATCTGGGGGC+TGG | + | 24208:18756-18775 | MS.gene40373:CDS | 60.0% | |
| GCATAGGCCCTGAATGCCAG+CGG | - | 24208:19084-19103 | MS.gene40373:intergenic | 60.0% | |
| GCCAGCCCCCAGATTCTTCT+AGG | - | 24208:18760-18779 | MS.gene40373:intergenic | 60.0% | |
| GCTGTCCGAGCTCACCTCAA+TGG | + | 24208:18812-18831 | MS.gene40373:CDS | 60.0% | |
| ! | AGAAGAATCTGGGGGCTGGC+TGG | + | 24208:18760-18779 | MS.gene40373:CDS | 60.0% |
| !! | GCTGGTTCGTAGACAGGGAG+TGG | + | 24208:17380-17399 | MS.gene40373:CDS | 60.0% |
| CGGCATCGCTTGGTCAGGAC+TGG | + | 24208:18332-18351 | MS.gene40373:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 24208 | gene | 17117 | 19928 | 17117 | ID=MS.gene40373 |
| 24208 | mRNA | 17117 | 19928 | 17117 | ID=MS.gene40373.t1;Parent=MS.gene40373 |
| 24208 | exon | 17117 | 17821 | 17117 | ID=MS.gene40373.t1.exon1;Parent=MS.gene40373.t1 |
| 24208 | CDS | 17117 | 17821 | 17117 | ID=cds.MS.gene40373.t1;Parent=MS.gene40373.t1 |
| 24208 | exon | 18176 | 18484 | 18176 | ID=MS.gene40373.t1.exon2;Parent=MS.gene40373.t1 |
| 24208 | CDS | 18176 | 18484 | 18176 | ID=cds.MS.gene40373.t1;Parent=MS.gene40373.t1 |
| 24208 | exon | 18575 | 18865 | 18575 | ID=MS.gene40373.t1.exon3;Parent=MS.gene40373.t1 |
| 24208 | CDS | 18575 | 18865 | 18575 | ID=cds.MS.gene40373.t1;Parent=MS.gene40373.t1 |
| 24208 | exon | 19031 | 19144 | 19031 | ID=MS.gene40373.t1.exon4;Parent=MS.gene40373.t1 |
| 24208 | CDS | 19031 | 19144 | 19031 | ID=cds.MS.gene40373.t1;Parent=MS.gene40373.t1 |
| 24208 | exon | 19458 | 19928 | 19458 | ID=MS.gene40373.t1.exon5;Parent=MS.gene40373.t1 |
| 24208 | CDS | 19458 | 19928 | 19458 | ID=cds.MS.gene40373.t1;Parent=MS.gene40373.t1 |
| Gene Sequence |
| Protein sequence |
