Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013184.t1 | XP_004501741.1 | 90.4 | 574 | 50 | 1 | 1 | 574 | 1 | 569 | 1.60E-216 | 762.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013184.t1 | Q8RWD5 | 65.4 | 599 | 156 | 9 | 1 | 570 | 1 | 577 | 2.2e-129 | 464.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013184.t1 | A0A1S2YBN2 | 90.4 | 574 | 50 | 1 | 1 | 574 | 1 | 569 | 1.2e-216 | 762.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene055536 | MS.gene013184 | PPI |
| MS.gene41652 | MS.gene013184 | PPI |
| MS.gene013184 | MS.gene06257 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013184.t1 | MTR_3g498775 | 99.303 | 574 | 3 | 1 | 1 | 574 | 1 | 573 | 0.0 | 1145 |
| MS.gene013184.t1 | MTR_3g498775 | 99.259 | 405 | 3 | 0 | 170 | 574 | 1 | 405 | 0.0 | 810 |
| MS.gene013184.t1 | MTR_7g114220 | 47.786 | 429 | 192 | 11 | 139 | 562 | 230 | 631 | 1.14e-115 | 357 |
| MS.gene013184.t1 | MTR_7g114220 | 38.503 | 187 | 80 | 6 | 1 | 163 | 1 | 176 | 5.83e-14 | 75.5 |
| MS.gene013184.t1 | MTR_1g117130 | 50.588 | 85 | 42 | 0 | 273 | 357 | 33 | 117 | 7.66e-22 | 92.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013184.t1 | AT3G48860 | 63.356 | 584 | 193 | 12 | 1 | 570 | 1 | 577 | 0.0 | 664 |
| MS.gene013184.t1 | AT5G23700 | 62.007 | 558 | 183 | 9 | 1 | 555 | 1 | 532 | 0.0 | 610 |
| MS.gene013184.t1 | AT5G23700 | 58.404 | 589 | 182 | 11 | 1 | 555 | 1 | 560 | 0.0 | 587 |
| MS.gene013184.t1 | AT5G23700 | 57.895 | 589 | 180 | 10 | 1 | 555 | 1 | 555 | 0.0 | 585 |
| MS.gene013184.t1 | AT3G48860 | 66.355 | 428 | 136 | 6 | 146 | 570 | 1 | 423 | 0.0 | 557 |
| MS.gene013184.t1 | AT5G13260 | 58.467 | 561 | 195 | 10 | 1 | 550 | 1 | 534 | 0.0 | 542 |
| MS.gene013184.t1 | AT3G48860 | 63.017 | 484 | 160 | 10 | 1 | 472 | 1 | 477 | 0.0 | 541 |
| MS.gene013184.t1 | AT4G25070 | 62.634 | 372 | 134 | 3 | 184 | 553 | 380 | 748 | 1.54e-149 | 449 |
| MS.gene013184.t1 | AT4G25070 | 62.466 | 373 | 135 | 3 | 183 | 553 | 381 | 750 | 7.11e-149 | 447 |
| MS.gene013184.t1 | AT4G08630 | 51.628 | 430 | 186 | 8 | 135 | 557 | 376 | 790 | 1.37e-134 | 411 |
| MS.gene013184.t1 | AT4G08630 | 51.276 | 431 | 187 | 9 | 135 | 557 | 376 | 791 | 2.92e-133 | 408 |
Find 162 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAGACTGCCGAATCAAATT+TGG | 0.169916 | 3.3:+81163458 | None:intergenic |
| CAGAAGACAGGCTTCGGTTT+TGG | 0.207993 | 3.3:-81161566 | MS.gene013184:CDS |
| ACCCGGTGATGCTAAATATT+TGG | 0.209870 | 3.3:-81162851 | MS.gene013184:CDS |
| TGCTCAGCAGTTTGGCTTCC+AGG | 0.226560 | 3.3:+81165084 | None:intergenic |
| AGCACTAGAATTTCTGTTAC+TGG | 0.266285 | 3.3:+81167620 | None:intergenic |
| AGCTGGAAGACCGGCGGTTT+CGG | 0.278869 | 3.3:-81167235 | MS.gene013184:CDS |
| AAATACTGACCATTTCTTCT+TGG | 0.280043 | 3.3:+81164319 | None:intergenic |
| GCGCTGATCTCCCGTGTCTT+TGG | 0.282933 | 3.3:+81165928 | None:intergenic |
| TGGATCTGGTCTCCACTTCT+TGG | 0.283260 | 3.3:+81165588 | None:intergenic |
| TTCTCTTTATTCCTGATTGT+TGG | 0.283750 | 3.3:+81167123 | None:intergenic |
| AGGCGTGGTTAACTTATTTC+TGG | 0.295556 | 3.3:-81161626 | MS.gene013184:CDS |
| TTTAGCATCACCGGGTGATT+TGG | 0.299242 | 3.3:+81162858 | None:intergenic |
| GCTAAATATTTGGAAGCATT+TGG | 0.317804 | 3.3:-81162841 | MS.gene013184:intron |
| GATGTTGGCTTGCTCGCTAC+TGG | 0.328613 | 3.3:-81164204 | MS.gene013184:CDS |
| TGGAGGAGAGCTTTATTTCA+TGG | 0.330011 | 3.3:-81161606 | MS.gene013184:CDS |
| TTCGGTCTCGCAACGGAAAT+CGG | 0.339993 | 3.3:+81167579 | None:intergenic |
| AATACTGACCATTTCTTCTT+GGG | 0.353157 | 3.3:+81164320 | None:intergenic |
| GAGGGAACTTGCTTCTTTGA+AGG | 0.358652 | 3.3:-81163670 | MS.gene013184:intron |
| TTTGAACTTGTCATCTCTGC+TGG | 0.359361 | 3.3:-81163911 | MS.gene013184:CDS |
| CTCTTTGAAAAGAACGTCTT+CGG | 0.366142 | 3.3:+81161973 | None:intergenic |
| TTTGTTGGAGTTGAGGAAGC+TGG | 0.370689 | 3.3:-81160412 | MS.gene013184:CDS |
| TCAAATTTGGGCGTCTGTGT+TGG | 0.372854 | 3.3:+81163471 | None:intergenic |
| ACGCTGTGCGGCGGCTTTAG+CGG | 0.383928 | 3.3:+81167746 | None:intergenic |
| AAGAGCCTTTGCTACGGCTT+CGG | 0.386256 | 3.3:+81164371 | None:intergenic |
| CTCCACTGCCGCGTGTAGAC+TGG | 0.387171 | 3.3:+81167885 | None:intergenic |
| CATTTATATCACGAACAGTT+TGG | 0.393557 | 3.3:+81163745 | None:intergenic |
| AGCCCTTCGTGTCGAAATTC+AGG | 0.395308 | 3.3:-81164547 | MS.gene013184:intron |
| TTTCTCGAGTTCCCTGGATC+TGG | 0.398557 | 3.3:+81165574 | None:intergenic |
| CAAATTTGGGCGTCTGTGTT+GGG | 0.402012 | 3.3:+81163472 | None:intergenic |
| GAGCAAGCCAACATCTCTTC+AGG | 0.403716 | 3.3:+81164212 | None:intergenic |
| ATCCAGGGAACTCGAGAAAC+AGG | 0.404007 | 3.3:-81165570 | MS.gene013184:intron |
| TCTAGTTGAGCGGGATTTGT+TGG | 0.404142 | 3.3:-81160427 | MS.gene013184:intron |
| GAACGATGCTTTATTAGAAA+AGG | 0.407263 | 3.3:-81165713 | MS.gene013184:intron |
| CAGGTTGCTTCTCTTGGAGA+AGG | 0.422749 | 3.3:-81165113 | MS.gene013184:CDS |
| CAGACTGCCGAATCAAATTT+GGG | 0.423991 | 3.3:+81163459 | None:intergenic |
| GATTTCGGAGGCGGCACCAC+TGG | 0.425160 | 3.3:+81167186 | None:intergenic |
| CGTGATATAAATGATCTTGC+CGG | 0.426184 | 3.3:-81163735 | MS.gene013184:CDS |
| TCTTTATTCCTGATTGTTGG+AGG | 0.427115 | 3.3:+81167126 | None:intergenic |
| AGGTTACCTGCTCAGCAGTT+TGG | 0.427607 | 3.3:+81165076 | None:intergenic |
| TTTGTCACAGGCTGCTCTCA+TGG | 0.429817 | 3.3:-81164610 | MS.gene013184:intron |
| TTGTTGGAGTTGAGGAAGCT+GGG | 0.439284 | 3.3:-81160411 | MS.gene013184:CDS |
| CGATTGATCCTCCAACAATC+AGG | 0.443369 | 3.3:-81167134 | MS.gene013184:CDS |
| GGCGTTCGTATGGTGGATTT+CGG | 0.447120 | 3.3:+81167171 | None:intergenic |
| TTCAGTTGAGATGGGTTTGA+GGG | 0.447980 | 3.3:-81163688 | MS.gene013184:CDS |
| AAAAGGCTAAGGAGGAATCT+TGG | 0.452681 | 3.3:-81163886 | MS.gene013184:CDS |
| TTCCAAATATTTAGCATCAC+CGG | 0.453193 | 3.3:+81162849 | None:intergenic |
| ATGTTGGCTTGCTCGCTACT+GGG | 0.454653 | 3.3:-81164203 | MS.gene013184:CDS |
| TTCCACCAGACATCACTATC+AGG | 0.455204 | 3.3:-81165961 | MS.gene013184:CDS |
| TGGGTATAGAACAACAACTT+TGG | 0.455801 | 3.3:-81160392 | MS.gene013184:CDS |
| CTGATTGTTGGAGGATCAAT+CGG | 0.458023 | 3.3:+81167135 | None:intergenic |
| GAAGAAAGAGCAGAAGGAGG+CGG | 0.460811 | 3.3:+81167648 | None:intergenic |
| TGTCATCTCTGCTGGACAAA+AGG | 0.466508 | 3.3:-81163903 | MS.gene013184:CDS |
| GAGTATGCTTTCAGTTGAGA+TGG | 0.466852 | 3.3:-81163697 | MS.gene013184:CDS |
| ACTTCACATGATGCTGTTGA+TGG | 0.469085 | 3.3:-81161519 | MS.gene013184:intron |
| CACCTGTTTCTCGAGTTCCC+TGG | 0.469515 | 3.3:+81165568 | None:intergenic |
| AAGAAGTGGAGACCAGATCC+AGG | 0.469773 | 3.3:-81165586 | MS.gene013184:CDS |
| GCAGAGATGACAAGTTCAAA+AGG | 0.472999 | 3.3:+81163914 | None:intergenic |
| AGCGGGATTTGTTGGAGTTG+AGG | 0.475064 | 3.3:-81160419 | MS.gene013184:CDS |
| ACTCTCTATGTTTCCTTCCC+CGG | 0.475392 | 3.3:+81163716 | None:intergenic |
| ATATTGCAGAAGACAGGCTT+CGG | 0.478751 | 3.3:-81161572 | MS.gene013184:CDS |
| TGGAAGCCAAACTGCTGAGC+AGG | 0.482141 | 3.3:-81165082 | MS.gene013184:intron |
| CTGCTTCCTTCTAGTTGAGC+GGG | 0.483450 | 3.3:-81160436 | MS.gene013184:intron |
| CGCCATAGGCGTTCGTATGG+TGG | 0.486844 | 3.3:+81167164 | None:intergenic |
| GGGTATAGAACAACAACTTT+GGG | 0.487870 | 3.3:-81160391 | MS.gene013184:CDS |
| CAAAACAAACACGGAATGAA+AGG | 0.487949 | 3.3:-81164584 | MS.gene013184:CDS |
| ACAGCGTCTCGCTCGTGTCA+TGG | 0.491526 | 3.3:-81167730 | MS.gene013184:CDS |
| AGAAGACCAATGTTCATACT+TGG | 0.492813 | 3.3:+81163949 | None:intergenic |
| GTCCAGTCTACACGCGGCAG+TGG | 0.495833 | 3.3:-81167887 | MS.gene013184:CDS |
| TTCATCATCAGCTGGAAGAC+CGG | 0.498897 | 3.3:-81167244 | MS.gene013184:CDS |
| GTGATATAAATGATCTTGCC+GGG | 0.498998 | 3.3:-81163734 | MS.gene013184:CDS |
| ATCCACCATACGAACGCCTA+TGG | 0.499768 | 3.3:-81167166 | MS.gene013184:CDS |
| CGTATGGTGGATTTCGGAGG+CGG | 0.501048 | 3.3:+81167177 | None:intergenic |
| CTGGACTCTCGGTTCTTCTC+CGG | 0.502539 | 3.3:+81167904 | None:intergenic |
| ACAGACGCCCAAATTTGATT+CGG | 0.506139 | 3.3:-81163466 | MS.gene013184:CDS |
| GCAGGAGAAGGAGATCTATT+CGG | 0.512746 | 3.3:+81167561 | None:intergenic |
| TTTCAGTTGAGATGGGTTTG+AGG | 0.519039 | 3.3:-81163689 | MS.gene013184:CDS |
| TACTCCAGAATTAAGTGAAG+AGG | 0.521502 | 3.3:-81161999 | MS.gene013184:intron |
| AGCGGCAATTCAAGCAGCAC+CGG | 0.522283 | 3.3:-81167864 | MS.gene013184:CDS |
| ATAAATGATCTTGCCGGGGA+AGG | 0.522445 | 3.3:-81163729 | MS.gene013184:CDS |
| ATCATCGCCGGTGATGTCGC+CGG | 0.523330 | 3.3:-81167838 | MS.gene013184:CDS |
| AGTTGCCTGATAGTGATGTC+TGG | 0.529058 | 3.3:+81165956 | None:intergenic |
| GTCGGAAGCAGGCTTATGAT+TGG | 0.531285 | 3.3:+81160323 | None:intergenic |
| GTAGGACCGAGCCGTGATTG+AGG | 0.531559 | 3.3:+81167810 | None:intergenic |
| GAAGTGTCTGAGTCGGAAGC+AGG | 0.531942 | 3.3:+81160312 | None:intergenic |
| TCTTGGAGAAGGTGTATCCC+TGG | 0.533811 | 3.3:-81165102 | MS.gene013184:CDS |
| ATCATCGTCATCGTCGTCAA+CGG | 0.539039 | 3.3:+81167698 | None:intergenic |
| CGCAACGGAAATCGGAGGGA+TGG | 0.539152 | 3.3:+81167587 | None:intergenic |
| GCTCAGCAGTTTGGCTTCCA+GGG | 0.539187 | 3.3:+81165085 | None:intergenic |
| CATCACCGGCGATGATGAGC+CGG | 0.539864 | 3.3:+81167845 | None:intergenic |
| CAGCTTGGACTAGGTACTGA+TGG | 0.540617 | 3.3:-81163780 | MS.gene013184:intron |
| TCAACAGCATCATGTGAAGT+TGG | 0.541330 | 3.3:+81161522 | None:intergenic |
| ATGACAAGTTCAAAAGGAAG+AGG | 0.541683 | 3.3:+81163920 | None:intergenic |
| AGTATGCTTTCAGTTGAGAT+GGG | 0.544442 | 3.3:-81163696 | MS.gene013184:CDS |
| AAAACAAACACGGAATGAAA+GGG | 0.545563 | 3.3:-81164583 | MS.gene013184:CDS |
| TCAGTTCGTTCATCATCAGC+TGG | 0.546757 | 3.3:-81167252 | MS.gene013184:CDS |
| GTGGAGAGACCGGTGGAAGT+AGG | 0.549968 | 3.3:+81167792 | None:intergenic |
| TCCAAATATTTAGCATCACC+GGG | 0.550653 | 3.3:+81162850 | None:intergenic |
| CTTTGGGAAGCTTCTCGCAA+GGG | 0.550860 | 3.3:-81160375 | MS.gene013184:CDS |
| GCGAGAATTACCGCAGGAGA+AGG | 0.551504 | 3.3:+81167549 | None:intergenic |
| GCGTTTGATGGTGGAGAGAC+CGG | 0.553150 | 3.3:+81167782 | None:intergenic |
| TCAATCGGAGGTACCGCCAT+AGG | 0.554332 | 3.3:+81167150 | None:intergenic |
| GTCTACACGCGGCAGTGGAG+CGG | 0.555759 | 3.3:-81167882 | MS.gene013184:CDS |
| CTCTGCTGGACAAAAGGCTA+AGG | 0.556195 | 3.3:-81163897 | MS.gene013184:CDS |
| GAGAGCTTTATTTCATGGTG+TGG | 0.558475 | 3.3:-81161601 | MS.gene013184:CDS |
| AGGAAGATATTGCAGAAGAC+AGG | 0.560279 | 3.3:-81161578 | MS.gene013184:CDS |
| GGATGCGCCGGCGACATCAC+CGG | 0.561221 | 3.3:+81167831 | None:intergenic |
| CAGCACCGGCTCATCATCGC+CGG | 0.563685 | 3.3:-81167850 | MS.gene013184:CDS |
| TCTGCTTCCTTCTAGTTGAG+CGG | 0.566972 | 3.3:-81160437 | MS.gene013184:intron |
| CGCCGGCGCATCCTCAATCA+CGG | 0.569206 | 3.3:-81167821 | MS.gene013184:CDS |
| AGATCTATTCGGTCTCGCAA+CGG | 0.573700 | 3.3:+81167572 | None:intergenic |
| CGTGGTTAACTTATTTCTGG+AGG | 0.574809 | 3.3:-81161623 | MS.gene013184:CDS |
| TGCTGGACAAAAGGCTAAGG+AGG | 0.574889 | 3.3:-81163894 | MS.gene013184:CDS |
| GAGAAAGAAGAAAGAGCAGA+AGG | 0.575083 | 3.3:+81167642 | None:intergenic |
| CTGCAGCAGCAGAGGAACAA+CGG | 0.575389 | 3.3:-81164401 | MS.gene013184:CDS |
| TACCGCCATAGGCGTTCGTA+TGG | 0.575928 | 3.3:+81167161 | None:intergenic |
| ACTTTGGGAAGCTTCTCGCA+AGG | 0.582823 | 3.3:-81160376 | MS.gene013184:CDS |
| AAAGAAGAAAGAGCAGAAGG+AGG | 0.583162 | 3.3:+81167645 | None:intergenic |
| AGCTTTATTTCATGGTGTGG+AGG | 0.585098 | 3.3:-81161598 | MS.gene013184:CDS |
| AGATGACGCTGCAGCAGCAG+AGG | 0.585454 | 3.3:-81164409 | MS.gene013184:CDS |
| TTGGCAAGTGCCGACTCTGA+AGG | 0.586694 | 3.3:+81160342 | None:intergenic |
| AGCCGTGATTGAGGATGCGC+CGG | 0.587313 | 3.3:+81167819 | None:intergenic |
| AGTTGGTGACTGTCCACTGC+GGG | 0.589051 | 3.3:+81161539 | None:intergenic |
| AAGTGGTCCTGAAGAGATGT+TGG | 0.590236 | 3.3:-81164219 | MS.gene013184:CDS |
| GCGCATCCTCAATCACGGCT+CGG | 0.591623 | 3.3:-81167816 | MS.gene013184:CDS |
| GTTCGTATGGTGGATTTCGG+AGG | 0.592589 | 3.3:+81167174 | None:intergenic |
| AGAAGCCGAAGCCGTAGCAA+AGG | 0.592956 | 3.3:-81164376 | MS.gene013184:CDS |
| TGATTGAAGAGCCTTTGCTA+CGG | 0.596284 | 3.3:+81164365 | None:intergenic |
| ACGAGCGAGACGCTGTGCGG+CGG | 0.598377 | 3.3:+81167737 | None:intergenic |
| AGCTGCTTTGCGTCAAAGAG+AGG | 0.599240 | 3.3:-81164961 | MS.gene013184:intron |
| GTCTCGCAACGGAAATCGGA+GGG | 0.602538 | 3.3:+81167583 | None:intergenic |
| CCGCGTGTAGACTGGACTCT+CGG | 0.604412 | 3.3:+81167893 | None:intergenic |
| AAATCCTCACAATCATGGAC+CGG | 0.605575 | 3.3:-81167923 | None:intergenic |
| GCTGATCGAACCGAAACCGC+CGG | 0.607453 | 3.3:+81167225 | None:intergenic |
| AAGGAGGCGGAGCACTGTAA+CGG | 0.610453 | 3.3:+81167661 | None:intergenic |
| CACCATACGAACGCCTATGG+CGG | 0.612551 | 3.3:-81167163 | MS.gene013184:CDS |
| TCATGGCTGCAAAACAAACA+CGG | 0.613528 | 3.3:-81164593 | MS.gene013184:CDS |
| AACACGGAATGAAAGGGATG+AGG | 0.620060 | 3.3:-81164577 | MS.gene013184:CDS |
| CAATCAGGAATAAAGAGAAG+AGG | 0.620486 | 3.3:-81167119 | MS.gene013184:intron |
| AATCGATCAGCCTTCAGAGT+CGG | 0.621223 | 3.3:-81160352 | MS.gene013184:CDS |
| CGGCTCGGTCCTACTTCCAC+CGG | 0.622316 | 3.3:-81167801 | MS.gene013184:CDS |
| TACTCAGCTAAGACTAGCAG+AGG | 0.623006 | 3.3:-81165618 | MS.gene013184:intron |
| TCACGATGAAGTGTCTGAGT+CGG | 0.626398 | 3.3:+81160305 | None:intergenic |
| TGTTGGCTTGCTCGCTACTG+GGG | 0.628223 | 3.3:-81164202 | MS.gene013184:CDS |
| ATCATCAGCTGGAAGACCGG+CGG | 0.633397 | 3.3:-81167241 | MS.gene013184:CDS |
| CACAGTCCAAGTATGAACAT+TGG | 0.636014 | 3.3:-81163955 | MS.gene013184:CDS |
| TGGGGTCTTTCCGTAAAACA+TGG | 0.650227 | 3.3:-81164184 | MS.gene013184:intron |
| GCAACTTAACTCCAAAGACA+CGG | 0.656597 | 3.3:-81165939 | MS.gene013184:CDS |
| CAACTTAACTCCAAAGACAC+GGG | 0.658234 | 3.3:-81165938 | MS.gene013184:CDS |
| CTACCTGAATTTCGACACGA+AGG | 0.659616 | 3.3:+81164544 | None:intergenic |
| AGAAGTGGAGACCAGATCCA+GGG | 0.665136 | 3.3:-81165585 | MS.gene013184:CDS |
| GGTCTCGCAACGGAAATCGG+AGG | 0.666488 | 3.3:+81167582 | None:intergenic |
| TACCTGAATTTCGACACGAA+GGG | 0.669846 | 3.3:+81164545 | None:intergenic |
| GAATAGATCTCCTTCTCCTG+CGG | 0.669858 | 3.3:-81167559 | MS.gene013184:intron |
| GTAAATACTATACTTCATCA+CGG | 0.671876 | 3.3:+81165891 | None:intergenic |
| TGATATAAATGATCTTGCCG+GGG | 0.682107 | 3.3:-81163733 | MS.gene013184:CDS |
| TGCCTGATAGTGATGTCTGG+TGG | 0.682242 | 3.3:+81165959 | None:intergenic |
| GACACGAGCGAGACGCTGTG+CGG | 0.698792 | 3.3:+81167734 | None:intergenic |
| TTGGGCTAATGCAAGCACAA+CGG | 0.701529 | 3.3:+81163490 | None:intergenic |
| CCGAGAGTCCAGTCTACACG+CGG | 0.705247 | 3.3:-81167893 | MS.gene013184:CDS |
| ATTGTTGGAGGATCAATCGG+AGG | 0.708364 | 3.3:+81167138 | None:intergenic |
| TTTGATGGTGGAGAGACCGG+TGG | 0.710364 | 3.3:+81167785 | None:intergenic |
| AAGTTGGTGACTGTCCACTG+CGG | 0.748822 | 3.3:+81161538 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 81160305 | 81167931 | 81160305 | ID=MS.gene013184 |
| chr3.3 | mRNA | 81160305 | 81167931 | 81160305 | ID=MS.gene013184.t1;Parent=MS.gene013184 |
| chr3.3 | exon | 81167560 | 81167931 | 81167560 | ID=MS.gene013184.t1.exon1;Parent=MS.gene013184.t1 |
| chr3.3 | CDS | 81167560 | 81167931 | 81167560 | ID=cds.MS.gene013184.t1;Parent=MS.gene013184.t1 |
| chr3.3 | exon | 81167120 | 81167304 | 81167120 | ID=MS.gene013184.t1.exon2;Parent=MS.gene013184.t1 |
| chr3.3 | CDS | 81167120 | 81167304 | 81167120 | ID=cds.MS.gene013184.t1;Parent=MS.gene013184.t1 |
| chr3.3 | exon | 81165904 | 81165985 | 81165904 | ID=MS.gene013184.t1.exon3;Parent=MS.gene013184.t1 |
| chr3.3 | CDS | 81165904 | 81165985 | 81165904 | ID=cds.MS.gene013184.t1;Parent=MS.gene013184.t1 |
| chr3.3 | exon | 81165714 | 81165755 | 81165714 | ID=MS.gene013184.t1.exon4;Parent=MS.gene013184.t1 |
| chr3.3 | CDS | 81165714 | 81165755 | 81165714 | ID=cds.MS.gene013184.t1;Parent=MS.gene013184.t1 |
| chr3.3 | exon | 81165571 | 81165633 | 81165571 | ID=MS.gene013184.t1.exon5;Parent=MS.gene013184.t1 |
| chr3.3 | CDS | 81165571 | 81165633 | 81165571 | ID=cds.MS.gene013184.t1;Parent=MS.gene013184.t1 |
| chr3.3 | exon | 81165083 | 81165132 | 81165083 | ID=MS.gene013184.t1.exon6;Parent=MS.gene013184.t1 |
| chr3.3 | CDS | 81165083 | 81165132 | 81165083 | ID=cds.MS.gene013184.t1;Parent=MS.gene013184.t1 |
| chr3.3 | exon | 81164962 | 81164989 | 81164962 | ID=MS.gene013184.t1.exon7;Parent=MS.gene013184.t1 |
| chr3.3 | CDS | 81164962 | 81164989 | 81164962 | ID=cds.MS.gene013184.t1;Parent=MS.gene013184.t1 |
| chr3.3 | exon | 81164548 | 81164622 | 81164548 | ID=MS.gene013184.t1.exon8;Parent=MS.gene013184.t1 |
| chr3.3 | CDS | 81164548 | 81164622 | 81164548 | ID=cds.MS.gene013184.t1;Parent=MS.gene013184.t1 |
| chr3.3 | exon | 81164329 | 81164439 | 81164329 | ID=MS.gene013184.t1.exon9;Parent=MS.gene013184.t1 |
| chr3.3 | CDS | 81164329 | 81164439 | 81164329 | ID=cds.MS.gene013184.t1;Parent=MS.gene013184.t1 |
| chr3.3 | exon | 81164185 | 81164245 | 81164185 | ID=MS.gene013184.t1.exon10;Parent=MS.gene013184.t1 |
| chr3.3 | CDS | 81164185 | 81164245 | 81164185 | ID=cds.MS.gene013184.t1;Parent=MS.gene013184.t1 |
| chr3.3 | exon | 81163879 | 81163995 | 81163879 | ID=MS.gene013184.t1.exon11;Parent=MS.gene013184.t1 |
| chr3.3 | CDS | 81163879 | 81163995 | 81163879 | ID=cds.MS.gene013184.t1;Parent=MS.gene013184.t1 |
| chr3.3 | exon | 81163671 | 81163789 | 81163671 | ID=MS.gene013184.t1.exon12;Parent=MS.gene013184.t1 |
| chr3.3 | CDS | 81163671 | 81163789 | 81163671 | ID=cds.MS.gene013184.t1;Parent=MS.gene013184.t1 |
| chr3.3 | exon | 81163453 | 81163522 | 81163453 | ID=MS.gene013184.t1.exon13;Parent=MS.gene013184.t1 |
| chr3.3 | CDS | 81163453 | 81163522 | 81163453 | ID=cds.MS.gene013184.t1;Parent=MS.gene013184.t1 |
| chr3.3 | exon | 81162842 | 81162883 | 81162842 | ID=MS.gene013184.t1.exon14;Parent=MS.gene013184.t1 |
| chr3.3 | CDS | 81162842 | 81162883 | 81162842 | ID=cds.MS.gene013184.t1;Parent=MS.gene013184.t1 |
| chr3.3 | exon | 81161973 | 81162013 | 81161973 | ID=MS.gene013184.t1.exon15;Parent=MS.gene013184.t1 |
| chr3.3 | CDS | 81161973 | 81162013 | 81161973 | ID=cds.MS.gene013184.t1;Parent=MS.gene013184.t1 |
| chr3.3 | exon | 81161520 | 81161646 | 81161520 | ID=MS.gene013184.t1.exon16;Parent=MS.gene013184.t1 |
| chr3.3 | CDS | 81161520 | 81161646 | 81161520 | ID=cds.MS.gene013184.t1;Parent=MS.gene013184.t1 |
| chr3.3 | exon | 81160305 | 81160444 | 81160305 | ID=MS.gene013184.t1.exon17;Parent=MS.gene013184.t1 |
| chr3.3 | CDS | 81160305 | 81160444 | 81160305 | ID=cds.MS.gene013184.t1;Parent=MS.gene013184.t1 |
| Gene Sequence |
| Protein sequence |
