Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06257.t1 | XP_004501741.1 | 90.1 | 575 | 51 | 1 | 1 | 575 | 1 | 569 | 8.00E-216 | 760 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06257.t1 | Q8RWD5 | 65.3 | 600 | 156 | 9 | 1 | 571 | 1 | 577 | 2.9e-129 | 463.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06257.t1 | A0A1S2YBN2 | 90.1 | 575 | 51 | 1 | 1 | 575 | 1 | 569 | 5.8e-216 | 760.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene06257 | -0.831074 | 2.05E-55 | -1.69E-46 |
| MS.gene049222 | MS.gene06257 | -0.80121 | 1.00E-48 | -1.69E-46 |
| MS.gene049285 | MS.gene06257 | -0.809789 | 1.59E-50 | -1.69E-46 |
| MS.gene050504 | MS.gene06257 | -0.806694 | 7.26E-50 | -1.69E-46 |
| MS.gene050547 | MS.gene06257 | 0.804343 | 2.26E-49 | -1.69E-46 |
| MS.gene050612 | MS.gene06257 | -0.809204 | 2.12E-50 | -1.69E-46 |
| MS.gene054642 | MS.gene06257 | -0.813249 | 2.82E-51 | -1.69E-46 |
| MS.gene055206 | MS.gene06257 | -0.801121 | 1.05E-48 | -1.69E-46 |
| MS.gene055502 | MS.gene06257 | -0.810949 | 8.94E-51 | -1.69E-46 |
| MS.gene055536 | MS.gene06257 | 0.962932 | 1.81E-121 | -1.69E-46 |
| MS.gene055577 | MS.gene06257 | -0.823918 | 1.07E-53 | -1.69E-46 |
| MS.gene05837 | MS.gene06257 | -0.805348 | 1.39E-49 | -1.69E-46 |
| MS.gene058419 | MS.gene06257 | -0.802197 | 6.29E-49 | -1.69E-46 |
| MS.gene058544 | MS.gene06257 | -0.819982 | 8.73E-53 | -1.69E-46 |
| MS.gene058838 | MS.gene06257 | -0.803406 | 3.54E-49 | -1.69E-46 |
| MS.gene059022 | MS.gene06257 | -0.801736 | 7.82E-49 | -1.69E-46 |
| MS.gene059023 | MS.gene06257 | -0.82261 | 2.16E-53 | -1.69E-46 |
| MS.gene059677 | MS.gene06257 | -0.805797 | 1.12E-49 | -1.69E-46 |
| MS.gene06092 | MS.gene06257 | -0.815786 | 7.74E-52 | -1.69E-46 |
| MS.gene061150 | MS.gene06257 | -0.812123 | 4.97E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene055536 | MS.gene06257 | PPI |
| MS.gene013184 | MS.gene06257 | PPI |
| MS.gene41652 | MS.gene06257 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06257.t1 | MTR_3g498775 | 99.130 | 575 | 3 | 1 | 1 | 575 | 1 | 573 | 0.0 | 1144 |
| MS.gene06257.t1 | MTR_3g498775 | 99.259 | 405 | 3 | 0 | 171 | 575 | 1 | 405 | 0.0 | 810 |
| MS.gene06257.t1 | MTR_7g114220 | 48.113 | 424 | 193 | 10 | 145 | 563 | 230 | 631 | 2.56e-115 | 356 |
| MS.gene06257.t1 | MTR_7g114220 | 39.474 | 190 | 80 | 6 | 1 | 166 | 1 | 179 | 4.66e-15 | 79.0 |
| MS.gene06257.t1 | MTR_1g117130 | 50.588 | 85 | 42 | 0 | 274 | 358 | 33 | 117 | 7.68e-22 | 92.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06257.t1 | AT3G48860 | 63.185 | 584 | 195 | 11 | 1 | 571 | 1 | 577 | 0.0 | 665 |
| MS.gene06257.t1 | AT5G23700 | 61.896 | 559 | 183 | 10 | 1 | 556 | 1 | 532 | 0.0 | 606 |
| MS.gene06257.t1 | AT5G23700 | 58.305 | 590 | 182 | 12 | 1 | 556 | 1 | 560 | 0.0 | 583 |
| MS.gene06257.t1 | AT5G23700 | 57.797 | 590 | 180 | 11 | 1 | 556 | 1 | 555 | 0.0 | 581 |
| MS.gene06257.t1 | AT3G48860 | 66.121 | 428 | 138 | 5 | 146 | 571 | 1 | 423 | 0.0 | 558 |
| MS.gene06257.t1 | AT5G13260 | 58.363 | 562 | 195 | 10 | 1 | 551 | 1 | 534 | 0.0 | 542 |
| MS.gene06257.t1 | AT3G48860 | 62.810 | 484 | 162 | 9 | 1 | 473 | 1 | 477 | 0.0 | 541 |
| MS.gene06257.t1 | AT4G25070 | 62.634 | 372 | 134 | 3 | 185 | 554 | 380 | 748 | 1.68e-149 | 449 |
| MS.gene06257.t1 | AT4G25070 | 62.466 | 373 | 135 | 3 | 184 | 554 | 381 | 750 | 7.43e-149 | 447 |
| MS.gene06257.t1 | AT4G08630 | 51.508 | 431 | 186 | 8 | 135 | 558 | 376 | 790 | 1.03e-134 | 412 |
| MS.gene06257.t1 | AT4G08630 | 51.157 | 432 | 187 | 9 | 135 | 558 | 376 | 791 | 3.65e-133 | 407 |
Find 162 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAGACTGCCGAATCAAATT+TGG | 0.169916 | 3.1:+78586510 | None:intergenic |
| CAGAAGACAGGCTTCGGTTT+TGG | 0.207993 | 3.1:-78584598 | MS.gene06257:CDS |
| ACCCGGTGATGCTAAATATT+TGG | 0.209870 | 3.1:-78585903 | MS.gene06257:CDS |
| TGCTCAGCAGTTTGGCTTCC+AGG | 0.226560 | 3.1:+78588136 | None:intergenic |
| AGCACTAGAATTTCTGTTAC+TGG | 0.266285 | 3.1:+78590676 | None:intergenic |
| AGCTGGAAGACCGGCGGTTT+CGG | 0.278869 | 3.1:-78590291 | MS.gene06257:CDS |
| AAATACTGACCATTTCTTCT+TGG | 0.280043 | 3.1:+78587371 | None:intergenic |
| GCGCTGATCTCCCGTGTCTT+TGG | 0.282933 | 3.1:+78588980 | None:intergenic |
| TGGATCTGGTCTCCACTTCT+TGG | 0.283260 | 3.1:+78588640 | None:intergenic |
| TTCTCTTTATTCCTGATTGT+TGG | 0.283750 | 3.1:+78590176 | None:intergenic |
| AGGCGTGGTTAACTTATTTC+TGG | 0.295556 | 3.1:-78584658 | MS.gene06257:CDS |
| TTTAGCATCACCGGGTGATT+TGG | 0.299242 | 3.1:+78585910 | None:intergenic |
| GCTAAATATTTGGAAGCATT+TGG | 0.317804 | 3.1:-78585893 | MS.gene06257:intron |
| GATGTTGGCTTGCTCGCTAC+TGG | 0.328613 | 3.1:-78587256 | MS.gene06257:CDS |
| TGGAGGAGAGCTTTATTTCA+TGG | 0.330011 | 3.1:-78584638 | MS.gene06257:CDS |
| TTCGGTCTCGCAACGGAAAT+CGG | 0.339993 | 3.1:+78590635 | None:intergenic |
| AATACTGACCATTTCTTCTT+GGG | 0.353157 | 3.1:+78587372 | None:intergenic |
| GAGGGAACTTGCTTCTTTGA+AGG | 0.358652 | 3.1:-78586722 | MS.gene06257:intron |
| TTTGAACTTGTCATCTCTGC+TGG | 0.359361 | 3.1:-78586963 | MS.gene06257:CDS |
| CTCTTTGAAAAGAACGTCTT+CGG | 0.366142 | 3.1:+78585026 | None:intergenic |
| TTTGTTGGAGTTGAGGAAGC+TGG | 0.370689 | 3.1:-78583451 | MS.gene06257:CDS |
| TCAAATTTGGGCGTCTGTGT+TGG | 0.372854 | 3.1:+78586523 | None:intergenic |
| ACGCTGTGCGGCGGCTTTAG+CGG | 0.383928 | 3.1:+78590802 | None:intergenic |
| AAGAGCCTTTGCTACGGCTT+CGG | 0.386256 | 3.1:+78587423 | None:intergenic |
| CTCCACTGCCGCGTGTAGAC+TGG | 0.387171 | 3.1:+78590941 | None:intergenic |
| CATTTATATCACGAACAGTT+TGG | 0.393557 | 3.1:+78586797 | None:intergenic |
| AGCCCTTCGTGTCGAAATTC+AGG | 0.395308 | 3.1:-78587599 | MS.gene06257:intron |
| TTTCTCGAGTTCCCTGGATC+TGG | 0.398557 | 3.1:+78588626 | None:intergenic |
| CAAATTTGGGCGTCTGTGTT+GGG | 0.402012 | 3.1:+78586524 | None:intergenic |
| GAGCAAGCCAACATCTCTTC+AGG | 0.403716 | 3.1:+78587264 | None:intergenic |
| ATCCAGGGAACTCGAGAAAC+AGG | 0.404007 | 3.1:-78588622 | MS.gene06257:intron |
| TCTAGTTGAGCGGGATTTGT+TGG | 0.404142 | 3.1:-78583466 | MS.gene06257:intron |
| GAACGATGCTTTATTAGAAA+AGG | 0.407263 | 3.1:-78588765 | MS.gene06257:intron |
| CAGGTTGCTTCTCTTGGAGA+AGG | 0.422749 | 3.1:-78588165 | MS.gene06257:CDS |
| CAGACTGCCGAATCAAATTT+GGG | 0.423991 | 3.1:+78586511 | None:intergenic |
| GATTTCGGAGGCGGCACCAC+TGG | 0.425160 | 3.1:+78590239 | None:intergenic |
| CGTGATATAAATGATCTTGC+CGG | 0.426184 | 3.1:-78586787 | MS.gene06257:CDS |
| TCTTTATTCCTGATTGTTGG+AGG | 0.427115 | 3.1:+78590179 | None:intergenic |
| AGGTTACCTGCTCAGCAGTT+TGG | 0.427607 | 3.1:+78588128 | None:intergenic |
| TTTGTCACAGGCTGCTCTCA+TGG | 0.429817 | 3.1:-78587662 | MS.gene06257:intron |
| TTGTTGGAGTTGAGGAAGCT+GGG | 0.439284 | 3.1:-78583450 | MS.gene06257:CDS |
| CGATTGATCCTCCAACAATC+AGG | 0.443369 | 3.1:-78590187 | MS.gene06257:CDS |
| GGCGTTCGTATGGTGGATTT+CGG | 0.447120 | 3.1:+78590224 | None:intergenic |
| TTCAGTTGAGATGGGTTTGA+GGG | 0.447980 | 3.1:-78586740 | MS.gene06257:CDS |
| AAAAGGCTAAGGAGGAATCT+TGG | 0.452681 | 3.1:-78586938 | MS.gene06257:CDS |
| TTCCAAATATTTAGCATCAC+CGG | 0.453193 | 3.1:+78585901 | None:intergenic |
| ATGTTGGCTTGCTCGCTACT+GGG | 0.454653 | 3.1:-78587255 | MS.gene06257:CDS |
| TTCCACCAGACATCACTATC+AGG | 0.455204 | 3.1:-78589013 | MS.gene06257:CDS |
| TGGGTATAGAACAACAACTT+TGG | 0.455801 | 3.1:-78583431 | MS.gene06257:CDS |
| CTGATTGTTGGAGGATCAAT+CGG | 0.458023 | 3.1:+78590188 | None:intergenic |
| GAAGAAAGAGCAGAAGGAGG+CGG | 0.460811 | 3.1:+78590704 | None:intergenic |
| TGTCATCTCTGCTGGACAAA+AGG | 0.466508 | 3.1:-78586955 | MS.gene06257:CDS |
| GAGTATGCTTTCAGTTGAGA+TGG | 0.466852 | 3.1:-78586749 | MS.gene06257:CDS |
| ACTTCACATGATGCTGTTGA+TGG | 0.469085 | 3.1:-78584551 | MS.gene06257:intron |
| CACCTGTTTCTCGAGTTCCC+TGG | 0.469515 | 3.1:+78588620 | None:intergenic |
| AAGAAGTGGAGACCAGATCC+AGG | 0.469773 | 3.1:-78588638 | MS.gene06257:CDS |
| GCAGAGATGACAAGTTCAAA+AGG | 0.472999 | 3.1:+78586966 | None:intergenic |
| AGCGGGATTTGTTGGAGTTG+AGG | 0.475064 | 3.1:-78583458 | MS.gene06257:CDS |
| ACTCTCTATGTTTCCTTCCC+CGG | 0.475392 | 3.1:+78586768 | None:intergenic |
| ATATTGCAGAAGACAGGCTT+CGG | 0.478751 | 3.1:-78584604 | MS.gene06257:CDS |
| TGGAAGCCAAACTGCTGAGC+AGG | 0.482141 | 3.1:-78588134 | MS.gene06257:intron |
| CTGCTTCCTTCTAGTTGAGC+GGG | 0.483450 | 3.1:-78583475 | MS.gene06257:intron |
| CGCCATAGGCGTTCGTATGG+TGG | 0.486844 | 3.1:+78590217 | None:intergenic |
| GGGTATAGAACAACAACTTT+GGG | 0.487870 | 3.1:-78583430 | MS.gene06257:CDS |
| CAAAACAAACACGGAATGAA+AGG | 0.487949 | 3.1:-78587636 | MS.gene06257:CDS |
| ACAGCGTCTCGCTCGTGTCA+TGG | 0.491526 | 3.1:-78590786 | MS.gene06257:CDS |
| AGAAGACCAATGTTCATACT+TGG | 0.492813 | 3.1:+78587001 | None:intergenic |
| GTCCAGTCTACACGCGGCAG+TGG | 0.495833 | 3.1:-78590943 | MS.gene06257:CDS |
| TTCATCATCAGCTGGAAGAC+CGG | 0.498897 | 3.1:-78590300 | MS.gene06257:CDS |
| GTGATATAAATGATCTTGCC+GGG | 0.498998 | 3.1:-78586786 | MS.gene06257:CDS |
| ATCCACCATACGAACGCCTA+TGG | 0.499768 | 3.1:-78590219 | MS.gene06257:CDS |
| CGTATGGTGGATTTCGGAGG+CGG | 0.501048 | 3.1:+78590230 | None:intergenic |
| CTGGACTCTCGGTTCTTCTC+CGG | 0.502539 | 3.1:+78590960 | None:intergenic |
| ACAGACGCCCAAATTTGATT+CGG | 0.506139 | 3.1:-78586518 | MS.gene06257:CDS |
| GCAGGAGAAGGAGATCTATT+CGG | 0.512746 | 3.1:+78590617 | None:intergenic |
| TTTCAGTTGAGATGGGTTTG+AGG | 0.519039 | 3.1:-78586741 | MS.gene06257:CDS |
| TACTCCAGAATTAAGTGAAG+AGG | 0.521502 | 3.1:-78585052 | MS.gene06257:intron |
| AGCGGCAATTCAAGCAGCAC+CGG | 0.522283 | 3.1:-78590920 | MS.gene06257:CDS |
| ATAAATGATCTTGCCGGGGA+AGG | 0.522445 | 3.1:-78586781 | MS.gene06257:CDS |
| ATCATCGCCGGTGATGTCGC+CGG | 0.523330 | 3.1:-78590894 | MS.gene06257:CDS |
| AGTTGCCTGATAGTGATGTC+TGG | 0.529058 | 3.1:+78589008 | None:intergenic |
| GTCGGAAGCAGGCTTATGAT+TGG | 0.531285 | 3.1:+78583362 | None:intergenic |
| GTAGGACCGAGCCGTGATTG+AGG | 0.531559 | 3.1:+78590866 | None:intergenic |
| GAAGTGTCTGAGTCGGAAGC+AGG | 0.531942 | 3.1:+78583351 | None:intergenic |
| TCTTGGAGAAGGTGTATCCC+TGG | 0.533811 | 3.1:-78588154 | MS.gene06257:CDS |
| ATCATCGTCATCGTCGTCAA+CGG | 0.539039 | 3.1:+78590754 | None:intergenic |
| CGCAACGGAAATCGGAGGGA+TGG | 0.539152 | 3.1:+78590643 | None:intergenic |
| GCTCAGCAGTTTGGCTTCCA+GGG | 0.539187 | 3.1:+78588137 | None:intergenic |
| CATCACCGGCGATGATGAGC+CGG | 0.539864 | 3.1:+78590901 | None:intergenic |
| CAGCTTGGACTAGGTACTGA+TGG | 0.540617 | 3.1:-78586832 | MS.gene06257:intron |
| TCAACAGCATCATGTGAAGT+TGG | 0.541330 | 3.1:+78584554 | None:intergenic |
| ATGACAAGTTCAAAAGGAAG+AGG | 0.541683 | 3.1:+78586972 | None:intergenic |
| AGTATGCTTTCAGTTGAGAT+GGG | 0.544442 | 3.1:-78586748 | MS.gene06257:CDS |
| AAAACAAACACGGAATGAAA+GGG | 0.545563 | 3.1:-78587635 | MS.gene06257:CDS |
| TCAGTTCGTTCATCATCAGC+TGG | 0.546757 | 3.1:-78590308 | MS.gene06257:CDS |
| GTGGAGAGACCGGTGGAAGT+AGG | 0.549968 | 3.1:+78590848 | None:intergenic |
| TCCAAATATTTAGCATCACC+GGG | 0.550653 | 3.1:+78585902 | None:intergenic |
| CTTTGGGAAGCTTCTCGCAA+GGG | 0.550860 | 3.1:-78583414 | MS.gene06257:CDS |
| GCGAGAATTACCGCAGGAGA+AGG | 0.551504 | 3.1:+78590605 | None:intergenic |
| GCGTTTGATGGTGGAGAGAC+CGG | 0.553150 | 3.1:+78590838 | None:intergenic |
| TCAATCGGAGGTACCGCCAT+AGG | 0.554332 | 3.1:+78590203 | None:intergenic |
| GTCTACACGCGGCAGTGGAG+CGG | 0.555759 | 3.1:-78590938 | MS.gene06257:CDS |
| CTCTGCTGGACAAAAGGCTA+AGG | 0.556195 | 3.1:-78586949 | MS.gene06257:CDS |
| GAGAGCTTTATTTCATGGTG+TGG | 0.558475 | 3.1:-78584633 | MS.gene06257:CDS |
| AGGAAGATATTGCAGAAGAC+AGG | 0.560279 | 3.1:-78584610 | MS.gene06257:CDS |
| GGATGCGCCGGCGACATCAC+CGG | 0.561221 | 3.1:+78590887 | None:intergenic |
| CAGCACCGGCTCATCATCGC+CGG | 0.563685 | 3.1:-78590906 | MS.gene06257:CDS |
| TCTGCTTCCTTCTAGTTGAG+CGG | 0.566972 | 3.1:-78583476 | MS.gene06257:intron |
| CGCCGGCGCATCCTCAATCA+CGG | 0.569206 | 3.1:-78590877 | MS.gene06257:CDS |
| AGATCTATTCGGTCTCGCAA+CGG | 0.573700 | 3.1:+78590628 | None:intergenic |
| CGTGGTTAACTTATTTCTGG+AGG | 0.574809 | 3.1:-78584655 | MS.gene06257:CDS |
| TGCTGGACAAAAGGCTAAGG+AGG | 0.574889 | 3.1:-78586946 | MS.gene06257:CDS |
| GAGAAAGAAGAAAGAGCAGA+AGG | 0.575083 | 3.1:+78590698 | None:intergenic |
| CTGCAGCAGCAGAGGAACAA+CGG | 0.575389 | 3.1:-78587453 | MS.gene06257:CDS |
| TACCGCCATAGGCGTTCGTA+TGG | 0.575928 | 3.1:+78590214 | None:intergenic |
| ACTTTGGGAAGCTTCTCGCA+AGG | 0.582823 | 3.1:-78583415 | MS.gene06257:CDS |
| AAAGAAGAAAGAGCAGAAGG+AGG | 0.583162 | 3.1:+78590701 | None:intergenic |
| AGCTTTATTTCATGGTGTGG+AGG | 0.585098 | 3.1:-78584630 | MS.gene06257:CDS |
| AGATGACGCTGCAGCAGCAG+AGG | 0.585454 | 3.1:-78587461 | MS.gene06257:CDS |
| TTGGCAAGTGCCGACTCTGA+AGG | 0.586694 | 3.1:+78583381 | None:intergenic |
| AGCCGTGATTGAGGATGCGC+CGG | 0.587313 | 3.1:+78590875 | None:intergenic |
| AGTTGGTGACTGTCCACTGC+GGG | 0.589051 | 3.1:+78584571 | None:intergenic |
| AAGTGGTCCTGAAGAGATGT+TGG | 0.590236 | 3.1:-78587271 | MS.gene06257:CDS |
| GCGCATCCTCAATCACGGCT+CGG | 0.591623 | 3.1:-78590872 | MS.gene06257:CDS |
| GTTCGTATGGTGGATTTCGG+AGG | 0.592589 | 3.1:+78590227 | None:intergenic |
| AGAAGCCGAAGCCGTAGCAA+AGG | 0.592956 | 3.1:-78587428 | MS.gene06257:CDS |
| TGATTGAAGAGCCTTTGCTA+CGG | 0.596284 | 3.1:+78587417 | None:intergenic |
| ACGAGCGAGACGCTGTGCGG+CGG | 0.598377 | 3.1:+78590793 | None:intergenic |
| AGCTGCTTTGCGTCAAAGAG+AGG | 0.599240 | 3.1:-78588013 | MS.gene06257:intron |
| GTCTCGCAACGGAAATCGGA+GGG | 0.602538 | 3.1:+78590639 | None:intergenic |
| CCGCGTGTAGACTGGACTCT+CGG | 0.604412 | 3.1:+78590949 | None:intergenic |
| AAATCCTCACAATCATGGAC+CGG | 0.605575 | 3.1:-78590979 | None:intergenic |
| GCTGATCGAACCGAAACCGC+CGG | 0.607453 | 3.1:+78590281 | None:intergenic |
| AAGGAGGCGGAGCACTGTAA+CGG | 0.610453 | 3.1:+78590717 | None:intergenic |
| CACCATACGAACGCCTATGG+CGG | 0.612551 | 3.1:-78590216 | MS.gene06257:CDS |
| TCATGGCTGCAAAACAAACA+CGG | 0.613528 | 3.1:-78587645 | MS.gene06257:CDS |
| AACACGGAATGAAAGGGATG+AGG | 0.620060 | 3.1:-78587629 | MS.gene06257:CDS |
| CAATCAGGAATAAAGAGAAG+AGG | 0.620486 | 3.1:-78590172 | MS.gene06257:intron |
| AATCGATCAGCCTTCAGAGT+CGG | 0.621223 | 3.1:-78583391 | MS.gene06257:CDS |
| CGGCTCGGTCCTACTTCCAC+CGG | 0.622316 | 3.1:-78590857 | MS.gene06257:CDS |
| TACTCAGCTAAGACTAGCAG+AGG | 0.623006 | 3.1:-78588670 | MS.gene06257:intron |
| TCACGATGAAGTGTCTGAGT+CGG | 0.626398 | 3.1:+78583344 | None:intergenic |
| TGTTGGCTTGCTCGCTACTG+GGG | 0.628223 | 3.1:-78587254 | MS.gene06257:CDS |
| ATCATCAGCTGGAAGACCGG+CGG | 0.633397 | 3.1:-78590297 | MS.gene06257:CDS |
| CACAGTCCAAGTATGAACAT+TGG | 0.636014 | 3.1:-78587007 | MS.gene06257:CDS |
| TGGGGTCTTTCTGTAAAACA+TGG | 0.652306 | 3.1:-78587236 | MS.gene06257:intron |
| GCAACTTAACTCCAAAGACA+CGG | 0.656597 | 3.1:-78588991 | MS.gene06257:CDS |
| CAACTTAACTCCAAAGACAC+GGG | 0.658234 | 3.1:-78588990 | MS.gene06257:CDS |
| CTACCTGAATTTCGACACGA+AGG | 0.659616 | 3.1:+78587596 | None:intergenic |
| AGAAGTGGAGACCAGATCCA+GGG | 0.665136 | 3.1:-78588637 | MS.gene06257:CDS |
| GGTCTCGCAACGGAAATCGG+AGG | 0.666488 | 3.1:+78590638 | None:intergenic |
| TACCTGAATTTCGACACGAA+GGG | 0.669846 | 3.1:+78587597 | None:intergenic |
| GAATAGATCTCCTTCTCCTG+CGG | 0.669858 | 3.1:-78590615 | MS.gene06257:intron |
| GTAAATACTATACTTCATCA+CGG | 0.671876 | 3.1:+78588943 | None:intergenic |
| TGATATAAATGATCTTGCCG+GGG | 0.682107 | 3.1:-78586785 | MS.gene06257:CDS |
| TGCCTGATAGTGATGTCTGG+TGG | 0.682242 | 3.1:+78589011 | None:intergenic |
| GACACGAGCGAGACGCTGTG+CGG | 0.698792 | 3.1:+78590790 | None:intergenic |
| TTGGGCTAATGCAAGCACAA+CGG | 0.701529 | 3.1:+78586542 | None:intergenic |
| CCGAGAGTCCAGTCTACACG+CGG | 0.705247 | 3.1:-78590949 | MS.gene06257:CDS |
| ATTGTTGGAGGATCAATCGG+AGG | 0.708364 | 3.1:+78590191 | None:intergenic |
| TTTGATGGTGGAGAGACCGG+TGG | 0.710364 | 3.1:+78590841 | None:intergenic |
| AAGTTGGTGACTGTCCACTG+CGG | 0.748822 | 3.1:+78584570 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 78583344 | 78590987 | 78583344 | ID=MS.gene06257 |
| chr3.1 | mRNA | 78583344 | 78590987 | 78583344 | ID=MS.gene06257.t1;Parent=MS.gene06257 |
| chr3.1 | exon | 78590616 | 78590987 | 78590616 | ID=MS.gene06257.t1.exon1;Parent=MS.gene06257.t1 |
| chr3.1 | CDS | 78590616 | 78590987 | 78590616 | ID=cds.MS.gene06257.t1;Parent=MS.gene06257.t1 |
| chr3.1 | exon | 78590173 | 78590360 | 78590173 | ID=MS.gene06257.t1.exon2;Parent=MS.gene06257.t1 |
| chr3.1 | CDS | 78590173 | 78590360 | 78590173 | ID=cds.MS.gene06257.t1;Parent=MS.gene06257.t1 |
| chr3.1 | exon | 78588956 | 78589037 | 78588956 | ID=MS.gene06257.t1.exon3;Parent=MS.gene06257.t1 |
| chr3.1 | CDS | 78588956 | 78589037 | 78588956 | ID=cds.MS.gene06257.t1;Parent=MS.gene06257.t1 |
| chr3.1 | exon | 78588766 | 78588807 | 78588766 | ID=MS.gene06257.t1.exon4;Parent=MS.gene06257.t1 |
| chr3.1 | CDS | 78588766 | 78588807 | 78588766 | ID=cds.MS.gene06257.t1;Parent=MS.gene06257.t1 |
| chr3.1 | exon | 78588623 | 78588685 | 78588623 | ID=MS.gene06257.t1.exon5;Parent=MS.gene06257.t1 |
| chr3.1 | CDS | 78588623 | 78588685 | 78588623 | ID=cds.MS.gene06257.t1;Parent=MS.gene06257.t1 |
| chr3.1 | exon | 78588135 | 78588184 | 78588135 | ID=MS.gene06257.t1.exon6;Parent=MS.gene06257.t1 |
| chr3.1 | CDS | 78588135 | 78588184 | 78588135 | ID=cds.MS.gene06257.t1;Parent=MS.gene06257.t1 |
| chr3.1 | exon | 78588014 | 78588041 | 78588014 | ID=MS.gene06257.t1.exon7;Parent=MS.gene06257.t1 |
| chr3.1 | CDS | 78588014 | 78588041 | 78588014 | ID=cds.MS.gene06257.t1;Parent=MS.gene06257.t1 |
| chr3.1 | exon | 78587600 | 78587674 | 78587600 | ID=MS.gene06257.t1.exon8;Parent=MS.gene06257.t1 |
| chr3.1 | CDS | 78587600 | 78587674 | 78587600 | ID=cds.MS.gene06257.t1;Parent=MS.gene06257.t1 |
| chr3.1 | exon | 78587381 | 78587491 | 78587381 | ID=MS.gene06257.t1.exon9;Parent=MS.gene06257.t1 |
| chr3.1 | CDS | 78587381 | 78587491 | 78587381 | ID=cds.MS.gene06257.t1;Parent=MS.gene06257.t1 |
| chr3.1 | exon | 78587237 | 78587297 | 78587237 | ID=MS.gene06257.t1.exon10;Parent=MS.gene06257.t1 |
| chr3.1 | CDS | 78587237 | 78587297 | 78587237 | ID=cds.MS.gene06257.t1;Parent=MS.gene06257.t1 |
| chr3.1 | exon | 78586931 | 78587047 | 78586931 | ID=MS.gene06257.t1.exon11;Parent=MS.gene06257.t1 |
| chr3.1 | CDS | 78586931 | 78587047 | 78586931 | ID=cds.MS.gene06257.t1;Parent=MS.gene06257.t1 |
| chr3.1 | exon | 78586723 | 78586841 | 78586723 | ID=MS.gene06257.t1.exon12;Parent=MS.gene06257.t1 |
| chr3.1 | CDS | 78586723 | 78586841 | 78586723 | ID=cds.MS.gene06257.t1;Parent=MS.gene06257.t1 |
| chr3.1 | exon | 78586505 | 78586574 | 78586505 | ID=MS.gene06257.t1.exon13;Parent=MS.gene06257.t1 |
| chr3.1 | CDS | 78586505 | 78586574 | 78586505 | ID=cds.MS.gene06257.t1;Parent=MS.gene06257.t1 |
| chr3.1 | exon | 78585894 | 78585935 | 78585894 | ID=MS.gene06257.t1.exon14;Parent=MS.gene06257.t1 |
| chr3.1 | CDS | 78585894 | 78585935 | 78585894 | ID=cds.MS.gene06257.t1;Parent=MS.gene06257.t1 |
| chr3.1 | exon | 78585026 | 78585066 | 78585026 | ID=MS.gene06257.t1.exon15;Parent=MS.gene06257.t1 |
| chr3.1 | CDS | 78585026 | 78585066 | 78585026 | ID=cds.MS.gene06257.t1;Parent=MS.gene06257.t1 |
| chr3.1 | exon | 78584552 | 78584678 | 78584552 | ID=MS.gene06257.t1.exon16;Parent=MS.gene06257.t1 |
| chr3.1 | CDS | 78584552 | 78584678 | 78584552 | ID=cds.MS.gene06257.t1;Parent=MS.gene06257.t1 |
| chr3.1 | exon | 78583344 | 78583483 | 78583344 | ID=MS.gene06257.t1.exon17;Parent=MS.gene06257.t1 |
| chr3.1 | CDS | 78583344 | 78583483 | 78583344 | ID=cds.MS.gene06257.t1;Parent=MS.gene06257.t1 |
| Gene Sequence |
| Protein sequence |
