Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055536.t1 | XP_004501741.1 | 90.1 | 575 | 51 | 1 | 1 | 575 | 1 | 569 | 8.00E-216 | 760 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055536.t1 | Q8RWD5 | 65.3 | 600 | 156 | 9 | 1 | 571 | 1 | 577 | 2.9e-129 | 463.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055536.t1 | A0A1S2YBN2 | 90.1 | 575 | 51 | 1 | 1 | 575 | 1 | 569 | 5.8e-216 | 760.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene055536 | -0.800055 | 1.72E-48 | -1.69E-46 |
| MS.gene050547 | MS.gene055536 | 0.809389 | 1.94E-50 | -1.69E-46 |
| MS.gene050950 | MS.gene055536 | -0.801547 | 8.55E-49 | -1.69E-46 |
| MS.gene051666 | MS.gene055536 | -0.815362 | 9.61E-52 | -1.69E-46 |
| MS.gene051749 | MS.gene055536 | 0.805202 | 1.50E-49 | -1.69E-46 |
| MS.gene053107 | MS.gene055536 | -0.802659 | 5.05E-49 | -1.69E-46 |
| MS.gene053322 | MS.gene055536 | -0.806591 | 7.63E-50 | -1.69E-46 |
| MS.gene054884 | MS.gene055536 | 0.800324 | 1.52E-48 | -1.69E-46 |
| MS.gene055206 | MS.gene055536 | -0.825176 | 5.41E-54 | -1.69E-46 |
| MS.gene055536 | MS.gene058544 | -0.806118 | 9.61E-50 | -1.69E-46 |
| MS.gene055536 | MS.gene059536 | -0.820587 | 6.34E-53 | -1.69E-46 |
| MS.gene055536 | MS.gene059960 | -0.804293 | 2.32E-49 | -1.69E-46 |
| MS.gene055536 | MS.gene06092 | -0.81756 | 3.10E-52 | -1.69E-46 |
| MS.gene055536 | MS.gene06257 | 0.962932 | 1.81E-121 | -1.69E-46 |
| MS.gene055536 | MS.gene06288 | -0.826288 | 2.95E-54 | -1.69E-46 |
| MS.gene055536 | MS.gene066801 | -0.804131 | 2.50E-49 | -1.69E-46 |
| MS.gene055536 | MS.gene068688 | -0.805171 | 1.52E-49 | -1.69E-46 |
| MS.gene055536 | MS.gene073077 | -0.803333 | 3.66E-49 | -1.69E-46 |
| MS.gene055536 | MS.gene08215 | -0.811812 | 5.80E-51 | -1.69E-46 |
| MS.gene055536 | MS.gene09798 | -0.806188 | 9.28E-50 | -1.69E-46 |
| MS.gene055536 | MS.gene22474 | -0.828708 | 7.74E-55 | -1.69E-46 |
| MS.gene055536 | MS.gene26624 | 0.801233 | 9.92E-49 | -1.69E-46 |
| MS.gene055536 | MS.gene30748 | -0.800513 | 1.39E-48 | -1.69E-46 |
| MS.gene055536 | MS.gene30950 | 0.801651 | 8.14E-49 | -1.69E-46 |
| MS.gene055536 | MS.gene31164 | 0.801851 | 7.41E-49 | -1.69E-46 |
| MS.gene055536 | MS.gene33004 | -0.817657 | 2.94E-52 | -1.69E-46 |
| MS.gene055536 | MS.gene33784 | -0.800054 | 1.73E-48 | -1.69E-46 |
| MS.gene055536 | MS.gene34319 | -0.80703 | 6.17E-50 | -1.69E-46 |
| MS.gene055536 | MS.gene36336 | -0.804042 | 2.61E-49 | -1.69E-46 |
| MS.gene055536 | MS.gene39979 | -0.800857 | 1.18E-48 | -1.69E-46 |
| MS.gene055536 | MS.gene40299 | -0.811209 | 7.85E-51 | -1.69E-46 |
| MS.gene055536 | MS.gene41354 | 0.805904 | 1.07E-49 | -1.69E-46 |
| MS.gene055536 | MS.gene41652 | 0.833817 | 4.29E-56 | -1.69E-46 |
| MS.gene055536 | MS.gene41718 | -0.815796 | 7.69E-52 | -1.69E-46 |
| MS.gene055536 | MS.gene42343 | -0.808115 | 3.63E-50 | -1.69E-46 |
| MS.gene055536 | MS.gene45483 | 0.811914 | 5.52E-51 | -1.69E-46 |
| MS.gene055536 | MS.gene46109 | -0.80646 | 8.14E-50 | -1.69E-46 |
| MS.gene055536 | MS.gene46300 | -0.807871 | 4.09E-50 | -1.69E-46 |
| MS.gene055536 | MS.gene49126 | -0.80223 | 6.19E-49 | -1.69E-46 |
| MS.gene055536 | MS.gene51878 | -0.806427 | 8.27E-50 | -1.69E-46 |
| MS.gene055536 | MS.gene53698 | 0.822571 | 2.21E-53 | -1.69E-46 |
| MS.gene055536 | MS.gene57987 | 0.801905 | 7.22E-49 | -1.69E-46 |
| MS.gene055536 | MS.gene58062 | -0.803729 | 3.03E-49 | -1.69E-46 |
| MS.gene055536 | MS.gene58223 | 0.81358 | 2.38E-51 | -1.69E-46 |
| MS.gene055536 | MS.gene58280 | -0.813827 | 2.10E-51 | -1.69E-46 |
| MS.gene055536 | MS.gene59048 | -0.802316 | 5.94E-49 | -1.69E-46 |
| MS.gene055536 | MS.gene59400 | 0.825486 | 4.57E-54 | -1.69E-46 |
| MS.gene055536 | MS.gene60930 | -0.808019 | 3.80E-50 | -1.69E-46 |
| MS.gene055536 | MS.gene60931 | -0.810642 | 1.04E-50 | -1.69E-46 |
| MS.gene055536 | MS.gene61559 | -0.840226 | 9.88E-58 | -1.69E-46 |
| MS.gene055536 | MS.gene62750 | -0.817205 | 3.72E-52 | -1.69E-46 |
| MS.gene055536 | MS.gene62752 | -0.822944 | 1.81E-53 | -1.69E-46 |
| MS.gene055536 | MS.gene62763 | -0.801486 | 8.80E-49 | -1.69E-46 |
| MS.gene055536 | MS.gene62848 | -0.817415 | 3.34E-52 | -1.69E-46 |
| MS.gene055536 | MS.gene66494 | -0.805061 | 1.60E-49 | -1.69E-46 |
| MS.gene055536 | MS.gene68129 | -0.802322 | 5.93E-49 | -1.69E-46 |
| MS.gene055536 | MS.gene68130 | -0.824729 | 6.89E-54 | -1.69E-46 |
| MS.gene055536 | MS.gene68392 | -0.823526 | 1.32E-53 | -1.69E-46 |
| MS.gene055536 | MS.gene68721 | -0.803979 | 2.69E-49 | -1.69E-46 |
| MS.gene055536 | MS.gene68965 | -0.80828 | 3.35E-50 | -1.69E-46 |
| MS.gene055536 | MS.gene70120 | -0.819072 | 1.41E-52 | -1.69E-46 |
| MS.gene055536 | MS.gene71692 | -0.809514 | 1.82E-50 | -1.69E-46 |
| MS.gene055536 | MS.gene76198 | -0.801836 | 7.46E-49 | -1.69E-46 |
| MS.gene055536 | MS.gene76628 | -0.801533 | 8.61E-49 | -1.69E-46 |
| MS.gene055536 | MS.gene81952 | -0.810972 | 8.83E-51 | -1.69E-46 |
| MS.gene055536 | MS.gene83095 | -0.811949 | 5.42E-51 | -1.69E-46 |
| MS.gene055536 | MS.gene84825 | -0.805439 | 1.33E-49 | -1.69E-46 |
| MS.gene055536 | MS.gene87466 | -0.805916 | 1.06E-49 | -1.69E-46 |
| MS.gene055536 | MS.gene87977 | -0.811753 | 5.98E-51 | -1.69E-46 |
| MS.gene055536 | MS.gene88929 | -0.801371 | 9.29E-49 | -1.69E-46 |
| MS.gene055536 | MS.gene91827 | -0.806252 | 9.00E-50 | -1.69E-46 |
| MS.gene055536 | MS.gene92714 | -0.80671 | 7.21E-50 | -1.69E-46 |
| MS.gene055536 | MS.gene94807 | -0.801083 | 1.06E-48 | -1.69E-46 |
| MS.gene055536 | MS.gene94980 | -0.803598 | 3.23E-49 | -1.69E-46 |
| MS.gene055536 | MS.gene97422 | -0.802348 | 5.85E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene055536 | MS.gene06257 | PPI |
| MS.gene41652 | MS.gene055536 | PPI |
| MS.gene055536 | MS.gene013184 | PPI |
| MS.gene055536 | MS.gene41652 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055536.t1 | MTR_3g498775 | 99.130 | 575 | 3 | 1 | 1 | 575 | 1 | 573 | 0.0 | 1144 |
| MS.gene055536.t1 | MTR_3g498775 | 99.259 | 405 | 3 | 0 | 171 | 575 | 1 | 405 | 0.0 | 810 |
| MS.gene055536.t1 | MTR_7g114220 | 48.113 | 424 | 193 | 10 | 145 | 563 | 230 | 631 | 2.56e-115 | 356 |
| MS.gene055536.t1 | MTR_7g114220 | 39.474 | 190 | 80 | 6 | 1 | 166 | 1 | 179 | 4.66e-15 | 79.0 |
| MS.gene055536.t1 | MTR_1g117130 | 50.588 | 85 | 42 | 0 | 274 | 358 | 33 | 117 | 7.68e-22 | 92.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055536.t1 | AT3G48860 | 63.185 | 584 | 195 | 11 | 1 | 571 | 1 | 577 | 0.0 | 665 |
| MS.gene055536.t1 | AT5G23700 | 61.896 | 559 | 183 | 10 | 1 | 556 | 1 | 532 | 0.0 | 606 |
| MS.gene055536.t1 | AT5G23700 | 58.305 | 590 | 182 | 12 | 1 | 556 | 1 | 560 | 0.0 | 583 |
| MS.gene055536.t1 | AT5G23700 | 57.797 | 590 | 180 | 11 | 1 | 556 | 1 | 555 | 0.0 | 581 |
| MS.gene055536.t1 | AT3G48860 | 66.121 | 428 | 138 | 5 | 146 | 571 | 1 | 423 | 0.0 | 558 |
| MS.gene055536.t1 | AT5G13260 | 58.363 | 562 | 195 | 10 | 1 | 551 | 1 | 534 | 0.0 | 542 |
| MS.gene055536.t1 | AT3G48860 | 62.810 | 484 | 162 | 9 | 1 | 473 | 1 | 477 | 0.0 | 541 |
| MS.gene055536.t1 | AT4G25070 | 62.634 | 372 | 134 | 3 | 185 | 554 | 380 | 748 | 1.68e-149 | 449 |
| MS.gene055536.t1 | AT4G25070 | 62.466 | 373 | 135 | 3 | 184 | 554 | 381 | 750 | 7.43e-149 | 447 |
| MS.gene055536.t1 | AT4G08630 | 51.508 | 431 | 186 | 8 | 135 | 558 | 376 | 790 | 1.03e-134 | 412 |
| MS.gene055536.t1 | AT4G08630 | 51.157 | 432 | 187 | 9 | 135 | 558 | 376 | 791 | 3.65e-133 | 407 |
Find 162 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAGACTGCCGAATCAAATT+TGG | 0.169916 | 3.2:+82090045 | None:intergenic |
| CAGAAGACAGGCTTCGGTTT+TGG | 0.207993 | 3.2:-82088153 | MS.gene055536:CDS |
| ACCCGGTGATGCTAAATATT+TGG | 0.209870 | 3.2:-82089438 | MS.gene055536:CDS |
| TGCTCAGCAGTTTGGCTTCC+AGG | 0.226560 | 3.2:+82091671 | None:intergenic |
| AGCACTAGAATTTCTGTTAC+TGG | 0.266285 | 3.2:+82094210 | None:intergenic |
| AGCTGGAAGACCGGCGGTTT+CGG | 0.278869 | 3.2:-82093825 | MS.gene055536:CDS |
| AAATACTGACCATTTCTTCT+TGG | 0.280043 | 3.2:+82090906 | None:intergenic |
| GCGCTGATCTCCCGTGTCTT+TGG | 0.282933 | 3.2:+82092515 | None:intergenic |
| TGGATCTGGTCTCCACTTCT+TGG | 0.283260 | 3.2:+82092175 | None:intergenic |
| TTCTCTTTATTCCTGATTGT+TGG | 0.283750 | 3.2:+82093710 | None:intergenic |
| AGGCGTGGTTAACTTATTTC+TGG | 0.295556 | 3.2:-82088213 | MS.gene055536:CDS |
| TTTAGCATCACCGGGTGATT+TGG | 0.299242 | 3.2:+82089445 | None:intergenic |
| GCTAAATATTTGGAAGCATT+TGG | 0.317804 | 3.2:-82089428 | MS.gene055536:intron |
| GATGTTGGCTTGCTCGCTAC+TGG | 0.328613 | 3.2:-82090791 | MS.gene055536:CDS |
| TGGAGGAGAGCTTTATTTCA+TGG | 0.330011 | 3.2:-82088193 | MS.gene055536:CDS |
| TTCGGTCTCGCAACGGAAAT+CGG | 0.339993 | 3.2:+82094169 | None:intergenic |
| AATACTGACCATTTCTTCTT+GGG | 0.353157 | 3.2:+82090907 | None:intergenic |
| GAGGGAACTTGCTTCTTTGA+AGG | 0.358652 | 3.2:-82090257 | MS.gene055536:intron |
| TTTGAACTTGTCATCTCTGC+TGG | 0.359361 | 3.2:-82090498 | MS.gene055536:CDS |
| CTCTTTGAAAAGAACGTCTT+CGG | 0.366142 | 3.2:+82088560 | None:intergenic |
| TTTGTTGGAGTTGAGGAAGC+TGG | 0.370689 | 3.2:-82086999 | MS.gene055536:CDS |
| TCAAATTTGGGCGTCTGTGT+TGG | 0.372854 | 3.2:+82090058 | None:intergenic |
| ACGCTGTGCGGCGGCTTTAG+CGG | 0.383928 | 3.2:+82094336 | None:intergenic |
| AAGAGCCTTTGCTACGGCTT+CGG | 0.386256 | 3.2:+82090958 | None:intergenic |
| CTCCACTGCCGCGTGTAGAC+TGG | 0.387171 | 3.2:+82094475 | None:intergenic |
| CATTTATATCACGAACAGTT+TGG | 0.393557 | 3.2:+82090332 | None:intergenic |
| AGCCCTTCGTGTCGAAATTC+AGG | 0.395308 | 3.2:-82091134 | MS.gene055536:intron |
| TTTCTCGAGTTCCCTGGATC+TGG | 0.398557 | 3.2:+82092161 | None:intergenic |
| CAAATTTGGGCGTCTGTGTT+GGG | 0.402012 | 3.2:+82090059 | None:intergenic |
| GAGCAAGCCAACATCTCTTC+AGG | 0.403716 | 3.2:+82090799 | None:intergenic |
| ATCCAGGGAACTCGAGAAAC+AGG | 0.404007 | 3.2:-82092157 | MS.gene055536:intron |
| TCTAGTTGAGCGGGATTTGT+TGG | 0.404142 | 3.2:-82087014 | MS.gene055536:intron |
| GAACGATGCTTTATTAGAAA+AGG | 0.407263 | 3.2:-82092300 | MS.gene055536:intron |
| CAGGTTGCTTCTCTTGGAGA+AGG | 0.422749 | 3.2:-82091700 | MS.gene055536:CDS |
| CAGACTGCCGAATCAAATTT+GGG | 0.423991 | 3.2:+82090046 | None:intergenic |
| GATTTCGGAGGCGGCACCAC+TGG | 0.425160 | 3.2:+82093773 | None:intergenic |
| CGTGATATAAATGATCTTGC+CGG | 0.426184 | 3.2:-82090322 | MS.gene055536:CDS |
| TCTTTATTCCTGATTGTTGG+AGG | 0.427115 | 3.2:+82093713 | None:intergenic |
| AGGTTACCTGCTCAGCAGTT+TGG | 0.427607 | 3.2:+82091663 | None:intergenic |
| TTTGTCACAGGCTGCTCTCA+TGG | 0.429817 | 3.2:-82091197 | MS.gene055536:intron |
| TTGTTGGAGTTGAGGAAGCT+GGG | 0.439284 | 3.2:-82086998 | MS.gene055536:CDS |
| CGATTGATCCTCCAACAATC+AGG | 0.443369 | 3.2:-82093721 | MS.gene055536:CDS |
| GGCGTTCGTATGGTGGATTT+CGG | 0.447120 | 3.2:+82093758 | None:intergenic |
| TTCAGTTGAGATGGGTTTGA+GGG | 0.447980 | 3.2:-82090275 | MS.gene055536:CDS |
| AAAAGGCTAAGGAGGAATCT+TGG | 0.452681 | 3.2:-82090473 | MS.gene055536:CDS |
| TTCCAAATATTTAGCATCAC+CGG | 0.453193 | 3.2:+82089436 | None:intergenic |
| ATGTTGGCTTGCTCGCTACT+GGG | 0.454653 | 3.2:-82090790 | MS.gene055536:CDS |
| TTCCACCAGACATCACTATC+AGG | 0.455204 | 3.2:-82092548 | MS.gene055536:CDS |
| TGGGTATAGAACAACAACTT+TGG | 0.455801 | 3.2:-82086979 | MS.gene055536:CDS |
| CTGATTGTTGGAGGATCAAT+CGG | 0.458023 | 3.2:+82093722 | None:intergenic |
| GAAGAAAGAGCAGAAGGAGG+CGG | 0.460811 | 3.2:+82094238 | None:intergenic |
| TGTCATCTCTGCTGGACAAA+AGG | 0.466508 | 3.2:-82090490 | MS.gene055536:CDS |
| GAGTATGCTTTCAGTTGAGA+TGG | 0.466852 | 3.2:-82090284 | MS.gene055536:CDS |
| ACTTCACATGATGCTGTTGA+TGG | 0.469085 | 3.2:-82088106 | MS.gene055536:intron |
| CACCTGTTTCTCGAGTTCCC+TGG | 0.469515 | 3.2:+82092155 | None:intergenic |
| AAGAAGTGGAGACCAGATCC+AGG | 0.469773 | 3.2:-82092173 | MS.gene055536:CDS |
| GCAGAGATGACAAGTTCAAA+AGG | 0.472999 | 3.2:+82090501 | None:intergenic |
| AGCGGGATTTGTTGGAGTTG+AGG | 0.475064 | 3.2:-82087006 | MS.gene055536:CDS |
| ACTCTCTATGTTTCCTTCCC+CGG | 0.475392 | 3.2:+82090303 | None:intergenic |
| ATATTGCAGAAGACAGGCTT+CGG | 0.478751 | 3.2:-82088159 | MS.gene055536:CDS |
| TGGAAGCCAAACTGCTGAGC+AGG | 0.482141 | 3.2:-82091669 | MS.gene055536:intron |
| CTGCTTCCTTCTAGTTGAGC+GGG | 0.483450 | 3.2:-82087023 | MS.gene055536:intron |
| CGCCATAGGCGTTCGTATGG+TGG | 0.486844 | 3.2:+82093751 | None:intergenic |
| GGGTATAGAACAACAACTTT+GGG | 0.487870 | 3.2:-82086978 | MS.gene055536:CDS |
| CAAAACAAACACGGAATGAA+AGG | 0.487949 | 3.2:-82091171 | MS.gene055536:CDS |
| ACAGCGTCTCGCTCGTGTCA+TGG | 0.491526 | 3.2:-82094320 | MS.gene055536:CDS |
| AGAAGACCAATGTTCATACT+TGG | 0.492813 | 3.2:+82090536 | None:intergenic |
| GTCCAGTCTACACGCGGCAG+TGG | 0.495833 | 3.2:-82094477 | MS.gene055536:CDS |
| TTCATCATCAGCTGGAAGAC+CGG | 0.498897 | 3.2:-82093834 | MS.gene055536:CDS |
| GTGATATAAATGATCTTGCC+GGG | 0.498998 | 3.2:-82090321 | MS.gene055536:CDS |
| ATCCACCATACGAACGCCTA+TGG | 0.499768 | 3.2:-82093753 | MS.gene055536:CDS |
| CGTATGGTGGATTTCGGAGG+CGG | 0.501048 | 3.2:+82093764 | None:intergenic |
| CTGGACTCTCGGTTCTTCTC+CGG | 0.502539 | 3.2:+82094494 | None:intergenic |
| ACAGACGCCCAAATTTGATT+CGG | 0.506139 | 3.2:-82090053 | MS.gene055536:CDS |
| GCAGGAGAAGGAGATCTATT+CGG | 0.512746 | 3.2:+82094151 | None:intergenic |
| TTTCAGTTGAGATGGGTTTG+AGG | 0.519039 | 3.2:-82090276 | MS.gene055536:CDS |
| TACTCCAGAATTAAGTGAAG+AGG | 0.521502 | 3.2:-82088586 | MS.gene055536:intron |
| AGCGGCAATTCAAGCAGCAC+CGG | 0.522283 | 3.2:-82094454 | MS.gene055536:CDS |
| ATAAATGATCTTGCCGGGGA+AGG | 0.522445 | 3.2:-82090316 | MS.gene055536:CDS |
| ATCATCGCCGGTGATGTCGC+CGG | 0.523330 | 3.2:-82094428 | MS.gene055536:CDS |
| AGTTGCCTGATAGTGATGTC+TGG | 0.529058 | 3.2:+82092543 | None:intergenic |
| GTCGGAAGCAGGCTTATGAT+TGG | 0.531285 | 3.2:+82086910 | None:intergenic |
| GTAGGACCGAGCCGTGATTG+AGG | 0.531559 | 3.2:+82094400 | None:intergenic |
| GAAGTGTCTGAGTCGGAAGC+AGG | 0.531942 | 3.2:+82086899 | None:intergenic |
| TCTTGGAGAAGGTGTATCCC+TGG | 0.533811 | 3.2:-82091689 | MS.gene055536:CDS |
| ATCATCGTCATCGTCGTCAA+CGG | 0.539039 | 3.2:+82094288 | None:intergenic |
| CGCAACGGAAATCGGAGGGA+TGG | 0.539152 | 3.2:+82094177 | None:intergenic |
| GCTCAGCAGTTTGGCTTCCA+GGG | 0.539187 | 3.2:+82091672 | None:intergenic |
| CATCACCGGCGATGATGAGC+CGG | 0.539864 | 3.2:+82094435 | None:intergenic |
| CAGCTTGGACTAGGTACTGA+TGG | 0.540617 | 3.2:-82090367 | MS.gene055536:intron |
| TCAACAGCATCATGTGAAGT+TGG | 0.541330 | 3.2:+82088109 | None:intergenic |
| ATGACAAGTTCAAAAGGAAG+AGG | 0.541683 | 3.2:+82090507 | None:intergenic |
| AGTATGCTTTCAGTTGAGAT+GGG | 0.544442 | 3.2:-82090283 | MS.gene055536:CDS |
| AAAACAAACACGGAATGAAA+GGG | 0.545563 | 3.2:-82091170 | MS.gene055536:CDS |
| TCAGTTCGTTCATCATCAGC+TGG | 0.546757 | 3.2:-82093842 | MS.gene055536:CDS |
| GTGGAGAGACCGGTGGAAGT+AGG | 0.549968 | 3.2:+82094382 | None:intergenic |
| TCCAAATATTTAGCATCACC+GGG | 0.550653 | 3.2:+82089437 | None:intergenic |
| CTTTGGGAAGCTTCTCGCAA+GGG | 0.550860 | 3.2:-82086962 | MS.gene055536:CDS |
| GCGAGAATTACCGCAGGAGA+AGG | 0.551504 | 3.2:+82094139 | None:intergenic |
| GCGTTTGATGGTGGAGAGAC+CGG | 0.553150 | 3.2:+82094372 | None:intergenic |
| TCAATCGGAGGTACCGCCAT+AGG | 0.554332 | 3.2:+82093737 | None:intergenic |
| GTCTACACGCGGCAGTGGAG+CGG | 0.555759 | 3.2:-82094472 | MS.gene055536:CDS |
| CTCTGCTGGACAAAAGGCTA+AGG | 0.556195 | 3.2:-82090484 | MS.gene055536:CDS |
| GAGAGCTTTATTTCATGGTG+TGG | 0.558475 | 3.2:-82088188 | MS.gene055536:CDS |
| AGGAAGATATTGCAGAAGAC+AGG | 0.560279 | 3.2:-82088165 | MS.gene055536:CDS |
| GGATGCGCCGGCGACATCAC+CGG | 0.561221 | 3.2:+82094421 | None:intergenic |
| CAGCACCGGCTCATCATCGC+CGG | 0.563685 | 3.2:-82094440 | MS.gene055536:CDS |
| TCTGCTTCCTTCTAGTTGAG+CGG | 0.566972 | 3.2:-82087024 | MS.gene055536:intron |
| CGCCGGCGCATCCTCAATCA+CGG | 0.569206 | 3.2:-82094411 | MS.gene055536:CDS |
| AGATCTATTCGGTCTCGCAA+CGG | 0.573700 | 3.2:+82094162 | None:intergenic |
| CGTGGTTAACTTATTTCTGG+AGG | 0.574809 | 3.2:-82088210 | MS.gene055536:CDS |
| TGCTGGACAAAAGGCTAAGG+AGG | 0.574889 | 3.2:-82090481 | MS.gene055536:CDS |
| GAGAAAGAAGAAAGAGCAGA+AGG | 0.575083 | 3.2:+82094232 | None:intergenic |
| CTGCAGCAGCAGAGGAACAA+CGG | 0.575389 | 3.2:-82090988 | MS.gene055536:CDS |
| TACCGCCATAGGCGTTCGTA+TGG | 0.575928 | 3.2:+82093748 | None:intergenic |
| ACTTTGGGAAGCTTCTCGCA+AGG | 0.582823 | 3.2:-82086963 | MS.gene055536:CDS |
| AAAGAAGAAAGAGCAGAAGG+AGG | 0.583162 | 3.2:+82094235 | None:intergenic |
| AGCTTTATTTCATGGTGTGG+AGG | 0.585098 | 3.2:-82088185 | MS.gene055536:CDS |
| AGATGACGCTGCAGCAGCAG+AGG | 0.585454 | 3.2:-82090996 | MS.gene055536:CDS |
| TTGGCAAGTGCCGACTCTGA+AGG | 0.586694 | 3.2:+82086929 | None:intergenic |
| AGCCGTGATTGAGGATGCGC+CGG | 0.587313 | 3.2:+82094409 | None:intergenic |
| AGTTGGTGACTGTCCACTGC+GGG | 0.589051 | 3.2:+82088126 | None:intergenic |
| AAGTGGTCCTGAAGAGATGT+TGG | 0.590236 | 3.2:-82090806 | MS.gene055536:CDS |
| GCGCATCCTCAATCACGGCT+CGG | 0.591623 | 3.2:-82094406 | MS.gene055536:CDS |
| GTTCGTATGGTGGATTTCGG+AGG | 0.592589 | 3.2:+82093761 | None:intergenic |
| AGAAGCCGAAGCCGTAGCAA+AGG | 0.592956 | 3.2:-82090963 | MS.gene055536:CDS |
| TGATTGAAGAGCCTTTGCTA+CGG | 0.596284 | 3.2:+82090952 | None:intergenic |
| ACGAGCGAGACGCTGTGCGG+CGG | 0.598377 | 3.2:+82094327 | None:intergenic |
| AGCTGCTTTGCGTCAAAGAG+AGG | 0.599240 | 3.2:-82091548 | MS.gene055536:intron |
| GTCTCGCAACGGAAATCGGA+GGG | 0.602538 | 3.2:+82094173 | None:intergenic |
| CCGCGTGTAGACTGGACTCT+CGG | 0.604412 | 3.2:+82094483 | None:intergenic |
| AAATCCTCACAATCATGGAC+CGG | 0.605575 | 3.2:-82094513 | None:intergenic |
| GCTGATCGAACCGAAACCGC+CGG | 0.607453 | 3.2:+82093815 | None:intergenic |
| AAGGAGGCGGAGCACTGTAA+CGG | 0.610453 | 3.2:+82094251 | None:intergenic |
| CACCATACGAACGCCTATGG+CGG | 0.612551 | 3.2:-82093750 | MS.gene055536:CDS |
| TCATGGCTGCAAAACAAACA+CGG | 0.613528 | 3.2:-82091180 | MS.gene055536:CDS |
| AACACGGAATGAAAGGGATG+AGG | 0.620060 | 3.2:-82091164 | MS.gene055536:CDS |
| CAATCAGGAATAAAGAGAAG+AGG | 0.620486 | 3.2:-82093706 | MS.gene055536:intron |
| AATCGATCAGCCTTCAGAGT+CGG | 0.621223 | 3.2:-82086939 | MS.gene055536:CDS |
| CGGCTCGGTCCTACTTCCAC+CGG | 0.622316 | 3.2:-82094391 | MS.gene055536:CDS |
| TACTCAGCTAAGACTAGCAG+AGG | 0.623006 | 3.2:-82092205 | MS.gene055536:intron |
| TCACGATGAAGTGTCTGAGT+CGG | 0.626398 | 3.2:+82086892 | None:intergenic |
| TGTTGGCTTGCTCGCTACTG+GGG | 0.628223 | 3.2:-82090789 | MS.gene055536:CDS |
| ATCATCAGCTGGAAGACCGG+CGG | 0.633397 | 3.2:-82093831 | MS.gene055536:CDS |
| CACAGTCCAAGTATGAACAT+TGG | 0.636014 | 3.2:-82090542 | MS.gene055536:CDS |
| TGGGGTCTTTCCGTAAAACA+TGG | 0.650227 | 3.2:-82090771 | MS.gene055536:intron |
| GCAACTTAACTCCAAAGACA+CGG | 0.656597 | 3.2:-82092526 | MS.gene055536:CDS |
| CAACTTAACTCCAAAGACAC+GGG | 0.658234 | 3.2:-82092525 | MS.gene055536:CDS |
| CTACCTGAATTTCGACACGA+AGG | 0.659616 | 3.2:+82091131 | None:intergenic |
| AGAAGTGGAGACCAGATCCA+GGG | 0.665136 | 3.2:-82092172 | MS.gene055536:CDS |
| GGTCTCGCAACGGAAATCGG+AGG | 0.666488 | 3.2:+82094172 | None:intergenic |
| TACCTGAATTTCGACACGAA+GGG | 0.669846 | 3.2:+82091132 | None:intergenic |
| GAATAGATCTCCTTCTCCTG+CGG | 0.669858 | 3.2:-82094149 | MS.gene055536:intron |
| GTAAATACTATACTTCATCA+CGG | 0.671876 | 3.2:+82092478 | None:intergenic |
| TGATATAAATGATCTTGCCG+GGG | 0.682107 | 3.2:-82090320 | MS.gene055536:CDS |
| TGCCTGATAGTGATGTCTGG+TGG | 0.682242 | 3.2:+82092546 | None:intergenic |
| GACACGAGCGAGACGCTGTG+CGG | 0.698792 | 3.2:+82094324 | None:intergenic |
| TTGGGCTAATGCAAGCACAA+CGG | 0.701529 | 3.2:+82090077 | None:intergenic |
| CCGAGAGTCCAGTCTACACG+CGG | 0.705247 | 3.2:-82094483 | MS.gene055536:CDS |
| ATTGTTGGAGGATCAATCGG+AGG | 0.708364 | 3.2:+82093725 | None:intergenic |
| TTTGATGGTGGAGAGACCGG+TGG | 0.710364 | 3.2:+82094375 | None:intergenic |
| AAGTTGGTGACTGTCCACTG+CGG | 0.748822 | 3.2:+82088125 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 82086892 | 82094521 | 82086892 | ID=MS.gene055536 |
| chr3.2 | mRNA | 82086892 | 82094521 | 82086892 | ID=MS.gene055536.t1;Parent=MS.gene055536 |
| chr3.2 | exon | 82094150 | 82094521 | 82094150 | ID=MS.gene055536.t1.exon1;Parent=MS.gene055536.t1 |
| chr3.2 | CDS | 82094150 | 82094521 | 82094150 | ID=cds.MS.gene055536.t1;Parent=MS.gene055536.t1 |
| chr3.2 | exon | 82093707 | 82093894 | 82093707 | ID=MS.gene055536.t1.exon2;Parent=MS.gene055536.t1 |
| chr3.2 | CDS | 82093707 | 82093894 | 82093707 | ID=cds.MS.gene055536.t1;Parent=MS.gene055536.t1 |
| chr3.2 | exon | 82092491 | 82092572 | 82092491 | ID=MS.gene055536.t1.exon3;Parent=MS.gene055536.t1 |
| chr3.2 | CDS | 82092491 | 82092572 | 82092491 | ID=cds.MS.gene055536.t1;Parent=MS.gene055536.t1 |
| chr3.2 | exon | 82092301 | 82092342 | 82092301 | ID=MS.gene055536.t1.exon4;Parent=MS.gene055536.t1 |
| chr3.2 | CDS | 82092301 | 82092342 | 82092301 | ID=cds.MS.gene055536.t1;Parent=MS.gene055536.t1 |
| chr3.2 | exon | 82092158 | 82092220 | 82092158 | ID=MS.gene055536.t1.exon5;Parent=MS.gene055536.t1 |
| chr3.2 | CDS | 82092158 | 82092220 | 82092158 | ID=cds.MS.gene055536.t1;Parent=MS.gene055536.t1 |
| chr3.2 | exon | 82091670 | 82091719 | 82091670 | ID=MS.gene055536.t1.exon6;Parent=MS.gene055536.t1 |
| chr3.2 | CDS | 82091670 | 82091719 | 82091670 | ID=cds.MS.gene055536.t1;Parent=MS.gene055536.t1 |
| chr3.2 | exon | 82091549 | 82091576 | 82091549 | ID=MS.gene055536.t1.exon7;Parent=MS.gene055536.t1 |
| chr3.2 | CDS | 82091549 | 82091576 | 82091549 | ID=cds.MS.gene055536.t1;Parent=MS.gene055536.t1 |
| chr3.2 | exon | 82091135 | 82091209 | 82091135 | ID=MS.gene055536.t1.exon8;Parent=MS.gene055536.t1 |
| chr3.2 | CDS | 82091135 | 82091209 | 82091135 | ID=cds.MS.gene055536.t1;Parent=MS.gene055536.t1 |
| chr3.2 | exon | 82090916 | 82091026 | 82090916 | ID=MS.gene055536.t1.exon9;Parent=MS.gene055536.t1 |
| chr3.2 | CDS | 82090916 | 82091026 | 82090916 | ID=cds.MS.gene055536.t1;Parent=MS.gene055536.t1 |
| chr3.2 | exon | 82090772 | 82090832 | 82090772 | ID=MS.gene055536.t1.exon10;Parent=MS.gene055536.t1 |
| chr3.2 | CDS | 82090772 | 82090832 | 82090772 | ID=cds.MS.gene055536.t1;Parent=MS.gene055536.t1 |
| chr3.2 | exon | 82090466 | 82090582 | 82090466 | ID=MS.gene055536.t1.exon11;Parent=MS.gene055536.t1 |
| chr3.2 | CDS | 82090466 | 82090582 | 82090466 | ID=cds.MS.gene055536.t1;Parent=MS.gene055536.t1 |
| chr3.2 | exon | 82090258 | 82090376 | 82090258 | ID=MS.gene055536.t1.exon12;Parent=MS.gene055536.t1 |
| chr3.2 | CDS | 82090258 | 82090376 | 82090258 | ID=cds.MS.gene055536.t1;Parent=MS.gene055536.t1 |
| chr3.2 | exon | 82090040 | 82090109 | 82090040 | ID=MS.gene055536.t1.exon13;Parent=MS.gene055536.t1 |
| chr3.2 | CDS | 82090040 | 82090109 | 82090040 | ID=cds.MS.gene055536.t1;Parent=MS.gene055536.t1 |
| chr3.2 | exon | 82089429 | 82089470 | 82089429 | ID=MS.gene055536.t1.exon14;Parent=MS.gene055536.t1 |
| chr3.2 | CDS | 82089429 | 82089470 | 82089429 | ID=cds.MS.gene055536.t1;Parent=MS.gene055536.t1 |
| chr3.2 | exon | 82088560 | 82088600 | 82088560 | ID=MS.gene055536.t1.exon15;Parent=MS.gene055536.t1 |
| chr3.2 | CDS | 82088560 | 82088600 | 82088560 | ID=cds.MS.gene055536.t1;Parent=MS.gene055536.t1 |
| chr3.2 | exon | 82088107 | 82088233 | 82088107 | ID=MS.gene055536.t1.exon16;Parent=MS.gene055536.t1 |
| chr3.2 | CDS | 82088107 | 82088233 | 82088107 | ID=cds.MS.gene055536.t1;Parent=MS.gene055536.t1 |
| chr3.2 | exon | 82086892 | 82087031 | 82086892 | ID=MS.gene055536.t1.exon17;Parent=MS.gene055536.t1 |
| chr3.2 | CDS | 82086892 | 82087031 | 82086892 | ID=cds.MS.gene055536.t1;Parent=MS.gene055536.t1 |
| Gene Sequence |
| Protein sequence |
