Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41652.t1 | XP_004501741.1 | 90.1 | 575 | 51 | 1 | 1 | 575 | 1 | 569 | 8.00E-216 | 760 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41652.t1 | Q8RWD5 | 65.3 | 600 | 156 | 9 | 1 | 571 | 1 | 577 | 2.9e-129 | 463.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41652.t1 | A0A1S2YBN2 | 90.1 | 575 | 51 | 1 | 1 | 575 | 1 | 569 | 5.8e-216 | 760.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene41652 | -0.830053 | 3.65E-55 | -1.69E-46 |
| MS.gene049217 | MS.gene41652 | -0.805243 | 1.47E-49 | -1.69E-46 |
| MS.gene049285 | MS.gene41652 | -0.812694 | 3.73E-51 | -1.69E-46 |
| MS.gene04939 | MS.gene41652 | -0.809308 | 2.02E-50 | -1.69E-46 |
| MS.gene050333 | MS.gene41652 | -0.806904 | 6.56E-50 | -1.69E-46 |
| MS.gene050475 | MS.gene41652 | 0.840457 | 8.60E-58 | -1.69E-46 |
| MS.gene050541 | MS.gene41652 | 0.83565 | 1.48E-56 | -1.69E-46 |
| MS.gene050612 | MS.gene41652 | -0.804473 | 2.12E-49 | -1.69E-46 |
| MS.gene052615 | MS.gene41652 | -0.805354 | 1.39E-49 | -1.69E-46 |
| MS.gene054642 | MS.gene41652 | -0.801634 | 8.21E-49 | -1.69E-46 |
| MS.gene055502 | MS.gene41652 | -0.838382 | 2.97E-57 | -1.69E-46 |
| MS.gene055536 | MS.gene41652 | 0.833817 | 4.29E-56 | -1.69E-46 |
| MS.gene058419 | MS.gene41652 | -0.823358 | 1.45E-53 | -1.69E-46 |
| MS.gene058544 | MS.gene41652 | -0.806635 | 7.48E-50 | -1.69E-46 |
| MS.gene059022 | MS.gene41652 | -0.801769 | 7.70E-49 | -1.69E-46 |
| MS.gene059023 | MS.gene41652 | -0.809684 | 1.68E-50 | -1.69E-46 |
| MS.gene059029 | MS.gene41652 | -0.800028 | 1.75E-48 | -1.69E-46 |
| MS.gene059677 | MS.gene41652 | -0.815253 | 1.02E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene41652 | MS.gene055536 | PPI |
| MS.gene055536 | MS.gene41652 | PPI |
| MS.gene41652 | MS.gene013184 | PPI |
| MS.gene41652 | MS.gene06257 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41652.t1 | MTR_3g498775 | 99.130 | 575 | 3 | 1 | 1 | 575 | 1 | 573 | 0.0 | 1144 |
| MS.gene41652.t1 | MTR_3g498775 | 99.259 | 405 | 3 | 0 | 171 | 575 | 1 | 405 | 0.0 | 810 |
| MS.gene41652.t1 | MTR_7g114220 | 48.113 | 424 | 193 | 10 | 145 | 563 | 230 | 631 | 2.56e-115 | 356 |
| MS.gene41652.t1 | MTR_7g114220 | 39.474 | 190 | 80 | 6 | 1 | 166 | 1 | 179 | 4.66e-15 | 79.0 |
| MS.gene41652.t1 | MTR_1g117130 | 50.588 | 85 | 42 | 0 | 274 | 358 | 33 | 117 | 7.68e-22 | 92.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41652.t1 | AT3G48860 | 63.185 | 584 | 195 | 11 | 1 | 571 | 1 | 577 | 0.0 | 665 |
| MS.gene41652.t1 | AT5G23700 | 61.896 | 559 | 183 | 10 | 1 | 556 | 1 | 532 | 0.0 | 606 |
| MS.gene41652.t1 | AT5G23700 | 58.305 | 590 | 182 | 12 | 1 | 556 | 1 | 560 | 0.0 | 583 |
| MS.gene41652.t1 | AT5G23700 | 57.797 | 590 | 180 | 11 | 1 | 556 | 1 | 555 | 0.0 | 581 |
| MS.gene41652.t1 | AT3G48860 | 66.121 | 428 | 138 | 5 | 146 | 571 | 1 | 423 | 0.0 | 558 |
| MS.gene41652.t1 | AT5G13260 | 58.363 | 562 | 195 | 10 | 1 | 551 | 1 | 534 | 0.0 | 542 |
| MS.gene41652.t1 | AT3G48860 | 62.810 | 484 | 162 | 9 | 1 | 473 | 1 | 477 | 0.0 | 541 |
| MS.gene41652.t1 | AT4G25070 | 62.634 | 372 | 134 | 3 | 185 | 554 | 380 | 748 | 1.68e-149 | 449 |
| MS.gene41652.t1 | AT4G25070 | 62.466 | 373 | 135 | 3 | 184 | 554 | 381 | 750 | 7.43e-149 | 447 |
| MS.gene41652.t1 | AT4G08630 | 51.508 | 431 | 186 | 8 | 135 | 558 | 376 | 790 | 1.03e-134 | 412 |
| MS.gene41652.t1 | AT4G08630 | 51.157 | 432 | 187 | 9 | 135 | 558 | 376 | 791 | 3.65e-133 | 407 |
Find 162 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAGACTGCCGAATCAAATT+TGG | 0.169916 | 3.4:+88548415 | None:intergenic |
| CAGAAGACAGGCTTCGGTTT+TGG | 0.207993 | 3.4:-88546512 | MS.gene41652:CDS |
| ACCCGGTGATGCTAAATATT+TGG | 0.209870 | 3.4:-88547810 | MS.gene41652:CDS |
| TGCTCAGCAGTTTGGCTTCC+AGG | 0.226560 | 3.4:+88550041 | None:intergenic |
| AGCACTAGAATTTCTGTTAC+TGG | 0.266285 | 3.4:+88552580 | None:intergenic |
| AGCTGGAAGACCGGCGGTTT+CGG | 0.278869 | 3.4:-88552195 | MS.gene41652:CDS |
| AAATACTGACCATTTCTTCT+TGG | 0.280043 | 3.4:+88549276 | None:intergenic |
| GCGCTGATCTCCCGTGTCTT+TGG | 0.282933 | 3.4:+88550885 | None:intergenic |
| TGGATCTGGTCTCCACTTCT+TGG | 0.283260 | 3.4:+88550545 | None:intergenic |
| TTCTCTTTATTCCTGATTGT+TGG | 0.283750 | 3.4:+88552080 | None:intergenic |
| AGGCGTGGTTAACTTATTTC+TGG | 0.295556 | 3.4:-88546572 | MS.gene41652:CDS |
| TTTAGCATCACCGGGTGATT+TGG | 0.299242 | 3.4:+88547817 | None:intergenic |
| GCTAAATATTTGGAAGCATT+TGG | 0.317804 | 3.4:-88547800 | MS.gene41652:intron |
| GATGTTGGCTTGCTCGCTAC+TGG | 0.328613 | 3.4:-88549161 | MS.gene41652:CDS |
| TGGAGGAGAGCTTTATTTCA+TGG | 0.330011 | 3.4:-88546552 | MS.gene41652:CDS |
| AATACTGACCATTTCTTCTT+GGG | 0.353157 | 3.4:+88549277 | None:intergenic |
| GAGGGAACTTGCTTCTTTGA+AGG | 0.358652 | 3.4:-88548627 | MS.gene41652:intron |
| TTTGAACTTGTCATCTCTGC+TGG | 0.359361 | 3.4:-88548868 | MS.gene41652:CDS |
| CTCTTTGAAAAGAACGTCTT+CGG | 0.366142 | 3.4:+88546940 | None:intergenic |
| TTTGTTGGAGTTGAGGAAGC+TGG | 0.370689 | 3.4:-88545365 | MS.gene41652:CDS |
| TCAAATTTGGGCGTCTGTGT+TGG | 0.372854 | 3.4:+88548428 | None:intergenic |
| TTCGGTCTCGCAACGGAAAT+CGG | 0.380052 | 3.4:+88552539 | None:intergenic |
| ACGCTGTGCGGCGGCTTTAG+CGG | 0.383928 | 3.4:+88552706 | None:intergenic |
| AAGAGCCTTTGCTACGGCTT+CGG | 0.386256 | 3.4:+88549328 | None:intergenic |
| CTCCACTGCCGCGTGTAGAC+TGG | 0.387171 | 3.4:+88552845 | None:intergenic |
| CATTTATATCACGAACAGTT+TGG | 0.393557 | 3.4:+88548702 | None:intergenic |
| AGCCCTTCGTGTCGAAATTC+AGG | 0.395308 | 3.4:-88549504 | MS.gene41652:intron |
| TTTCTCGAGTTCCCTGGATC+TGG | 0.398557 | 3.4:+88550531 | None:intergenic |
| CAAATTTGGGCGTCTGTGTT+GGG | 0.402012 | 3.4:+88548429 | None:intergenic |
| GAGCAAGCCAACATCTCTTC+AGG | 0.403716 | 3.4:+88549169 | None:intergenic |
| ATCCAGGGAACTCGAGAAAC+AGG | 0.404007 | 3.4:-88550527 | MS.gene41652:intron |
| TCTAGTTGAGCGGGATTTGT+TGG | 0.404142 | 3.4:-88545380 | MS.gene41652:intron |
| GAACGATGCTTTATTAGAAA+AGG | 0.407263 | 3.4:-88550670 | MS.gene41652:intron |
| CAGGTTGCTTCTCTTGGAGA+AGG | 0.422749 | 3.4:-88550070 | MS.gene41652:CDS |
| CAGACTGCCGAATCAAATTT+GGG | 0.423991 | 3.4:+88548416 | None:intergenic |
| GATTTCGGAGGCGGCACCAC+TGG | 0.425160 | 3.4:+88552143 | None:intergenic |
| CGTGATATAAATGATCTTGC+CGG | 0.426184 | 3.4:-88548692 | MS.gene41652:CDS |
| TCTTTATTCCTGATTGTTGG+AGG | 0.427115 | 3.4:+88552083 | None:intergenic |
| AGGTTACCTGCTCAGCAGTT+TGG | 0.427607 | 3.4:+88550033 | None:intergenic |
| TTTGTCACAGGCTGCTCTCA+TGG | 0.429817 | 3.4:-88549567 | MS.gene41652:intron |
| TTGTTGGAGTTGAGGAAGCT+GGG | 0.439284 | 3.4:-88545364 | MS.gene41652:CDS |
| CGATTGATCCTCCAACAATC+AGG | 0.443369 | 3.4:-88552091 | MS.gene41652:CDS |
| GGCGTTCGTATGGTGGATTT+CGG | 0.447120 | 3.4:+88552128 | None:intergenic |
| TTCAGTTGAGATGGGTTTGA+GGG | 0.447980 | 3.4:-88548645 | MS.gene41652:CDS |
| AAAAGGCTAAGGAGGAATCT+TGG | 0.452681 | 3.4:-88548843 | MS.gene41652:CDS |
| TTCCAAATATTTAGCATCAC+CGG | 0.453193 | 3.4:+88547808 | None:intergenic |
| ATGTTGGCTTGCTCGCTACT+GGG | 0.454653 | 3.4:-88549160 | MS.gene41652:CDS |
| TTCCACCAGACATCACTATC+AGG | 0.455204 | 3.4:-88550918 | MS.gene41652:CDS |
| TGGGTATAGAACAACAACTT+TGG | 0.455801 | 3.4:-88545345 | MS.gene41652:CDS |
| CTGATTGTTGGAGGATCAAT+CGG | 0.458023 | 3.4:+88552092 | None:intergenic |
| GAAGAAAGAGCAGAAGGAGG+CGG | 0.460811 | 3.4:+88552608 | None:intergenic |
| TGTCATCTCTGCTGGACAAA+AGG | 0.466508 | 3.4:-88548860 | MS.gene41652:CDS |
| GAGTATGCTTTCAGTTGAGA+TGG | 0.466852 | 3.4:-88548654 | MS.gene41652:CDS |
| ACTTCACATGATGCTGTTGA+TGG | 0.469085 | 3.4:-88546465 | MS.gene41652:intron |
| CACCTGTTTCTCGAGTTCCC+TGG | 0.469515 | 3.4:+88550525 | None:intergenic |
| AAGAAGTGGAGACCAGATCC+AGG | 0.469773 | 3.4:-88550543 | MS.gene41652:CDS |
| GCAGAGATGACAAGTTCAAA+AGG | 0.472999 | 3.4:+88548871 | None:intergenic |
| AGCGGGATTTGTTGGAGTTG+AGG | 0.475064 | 3.4:-88545372 | MS.gene41652:CDS |
| ACTCTCTATGTTTCCTTCCC+CGG | 0.475392 | 3.4:+88548673 | None:intergenic |
| ATATTGCAGAAGACAGGCTT+CGG | 0.478751 | 3.4:-88546518 | MS.gene41652:CDS |
| TGGAAGCCAAACTGCTGAGC+AGG | 0.482141 | 3.4:-88550039 | MS.gene41652:intron |
| CTGCTTCCTTCTAGTTGAGC+GGG | 0.483450 | 3.4:-88545389 | MS.gene41652:intron |
| CGCCATAGGCGTTCGTATGG+TGG | 0.486844 | 3.4:+88552121 | None:intergenic |
| GGGTATAGAACAACAACTTT+GGG | 0.487870 | 3.4:-88545344 | MS.gene41652:CDS |
| CAAAACAAACACGGAATGAA+AGG | 0.487949 | 3.4:-88549541 | MS.gene41652:CDS |
| ACAGCGTCTCGCTCGTGTCA+TGG | 0.491526 | 3.4:-88552690 | MS.gene41652:CDS |
| AGAAGACCAATGTTCATACT+TGG | 0.492813 | 3.4:+88548906 | None:intergenic |
| GTCCAGTCTACACGCGGCAG+TGG | 0.495833 | 3.4:-88552847 | MS.gene41652:CDS |
| TTCATCATCAGCTGGAAGAC+CGG | 0.498897 | 3.4:-88552204 | MS.gene41652:CDS |
| GTGATATAAATGATCTTGCC+GGG | 0.498998 | 3.4:-88548691 | MS.gene41652:CDS |
| ATCCACCATACGAACGCCTA+TGG | 0.499768 | 3.4:-88552123 | MS.gene41652:CDS |
| CGTATGGTGGATTTCGGAGG+CGG | 0.501048 | 3.4:+88552134 | None:intergenic |
| CTGGACTCTCGGTTCTTCTC+CGG | 0.502539 | 3.4:+88552864 | None:intergenic |
| ACAGACGCCCAAATTTGATT+CGG | 0.506139 | 3.4:-88548423 | MS.gene41652:CDS |
| TTTCAGTTGAGATGGGTTTG+AGG | 0.519039 | 3.4:-88548646 | MS.gene41652:CDS |
| TACTCCAGAATTAAGTGAAG+AGG | 0.521502 | 3.4:-88546966 | MS.gene41652:intron |
| AGCGGCAATTCAAGCAGCAC+CGG | 0.522283 | 3.4:-88552824 | MS.gene41652:CDS |
| ATAAATGATCTTGCCGGGGA+AGG | 0.522445 | 3.4:-88548686 | MS.gene41652:CDS |
| ATCATCGCCGGTGATGTCGC+CGG | 0.523330 | 3.4:-88552798 | MS.gene41652:CDS |
| AGTTGCCTGATAGTGATGTC+TGG | 0.529058 | 3.4:+88550913 | None:intergenic |
| GTCGGAAGCAGGCTTATGAT+TGG | 0.531285 | 3.4:+88545276 | None:intergenic |
| GTAGGACCGAGCCGTGATTG+AGG | 0.531559 | 3.4:+88552770 | None:intergenic |
| GAAGTGTCTGAGTCGGAAGC+AGG | 0.531942 | 3.4:+88545265 | None:intergenic |
| TCTTGGAGAAGGTGTATCCC+TGG | 0.533811 | 3.4:-88550059 | MS.gene41652:CDS |
| ATCATCGTCATCGTCGTCAA+CGG | 0.539039 | 3.4:+88552658 | None:intergenic |
| CGCAACGGAAATCGGAGGGA+TGG | 0.539152 | 3.4:+88552547 | None:intergenic |
| GCTCAGCAGTTTGGCTTCCA+GGG | 0.539187 | 3.4:+88550042 | None:intergenic |
| CATCACCGGCGATGATGAGC+CGG | 0.539864 | 3.4:+88552805 | None:intergenic |
| CAGCTTGGACTAGGTACTGA+TGG | 0.540617 | 3.4:-88548737 | MS.gene41652:intron |
| TCAACAGCATCATGTGAAGT+TGG | 0.541330 | 3.4:+88546468 | None:intergenic |
| ATGACAAGTTCAAAAGGAAG+AGG | 0.541683 | 3.4:+88548877 | None:intergenic |
| AGTATGCTTTCAGTTGAGAT+GGG | 0.544442 | 3.4:-88548653 | MS.gene41652:CDS |
| AAAACAAACACGGAATGAAA+GGG | 0.545563 | 3.4:-88549540 | MS.gene41652:CDS |
| TCAGTTCGTTCATCATCAGC+TGG | 0.546757 | 3.4:-88552212 | MS.gene41652:CDS |
| GTGGAGAGACCGGTGGAAGT+AGG | 0.549968 | 3.4:+88552752 | None:intergenic |
| TCCAAATATTTAGCATCACC+GGG | 0.550653 | 3.4:+88547809 | None:intergenic |
| CTTTGGGAAGCTTCTCGCAA+GGG | 0.550860 | 3.4:-88545328 | MS.gene41652:CDS |
| GCGAGAATTACCGCAGGAGA+AGG | 0.551504 | 3.4:+88552509 | None:intergenic |
| GCGTTTGATGGTGGAGAGAC+CGG | 0.553150 | 3.4:+88552742 | None:intergenic |
| TCAATCGGAGGTACCGCCAT+AGG | 0.554332 | 3.4:+88552107 | None:intergenic |
| GTCTACACGCGGCAGTGGAG+CGG | 0.555759 | 3.4:-88552842 | MS.gene41652:CDS |
| CTCTGCTGGACAAAAGGCTA+AGG | 0.556195 | 3.4:-88548854 | MS.gene41652:CDS |
| GAGAGCTTTATTTCATGGTG+TGG | 0.558475 | 3.4:-88546547 | MS.gene41652:CDS |
| AGGAAGATATTGCAGAAGAC+AGG | 0.560279 | 3.4:-88546524 | MS.gene41652:CDS |
| GGATGCGCCGGCGACATCAC+CGG | 0.561221 | 3.4:+88552791 | None:intergenic |
| CAGCACCGGCTCATCATCGC+CGG | 0.563685 | 3.4:-88552810 | MS.gene41652:CDS |
| TCTGCTTCCTTCTAGTTGAG+CGG | 0.566972 | 3.4:-88545390 | MS.gene41652:intron |
| CGCCGGCGCATCCTCAATCA+CGG | 0.569206 | 3.4:-88552781 | MS.gene41652:CDS |
| CGTGGTTAACTTATTTCTGG+AGG | 0.574809 | 3.4:-88546569 | MS.gene41652:CDS |
| TGCTGGACAAAAGGCTAAGG+AGG | 0.574889 | 3.4:-88548851 | MS.gene41652:CDS |
| GAGAAAGAAGAAAGAGCAGA+AGG | 0.575083 | 3.4:+88552602 | None:intergenic |
| CTGCAGCAGCAGAGGAACAA+CGG | 0.575389 | 3.4:-88549358 | MS.gene41652:CDS |
| TACCGCCATAGGCGTTCGTA+TGG | 0.575928 | 3.4:+88552118 | None:intergenic |
| ACTTTGGGAAGCTTCTCGCA+AGG | 0.582823 | 3.4:-88545329 | MS.gene41652:CDS |
| AAAGAAGAAAGAGCAGAAGG+AGG | 0.583162 | 3.4:+88552605 | None:intergenic |
| GCAGGAGAAGGAGATCGATT+CGG | 0.583191 | 3.4:+88552521 | None:intergenic |
| AGCTTTATTTCATGGTGTGG+AGG | 0.585098 | 3.4:-88546544 | MS.gene41652:CDS |
| AGATGACGCTGCAGCAGCAG+AGG | 0.585454 | 3.4:-88549366 | MS.gene41652:CDS |
| TTGGCAAGTGCCGACTCTGA+AGG | 0.586694 | 3.4:+88545295 | None:intergenic |
| AGCCGTGATTGAGGATGCGC+CGG | 0.587313 | 3.4:+88552779 | None:intergenic |
| AGTTGGTGACTGTCCACTGC+GGG | 0.589051 | 3.4:+88546485 | None:intergenic |
| AAGTGGTCCTGAAGAGATGT+TGG | 0.590236 | 3.4:-88549176 | MS.gene41652:CDS |
| GCGCATCCTCAATCACGGCT+CGG | 0.591623 | 3.4:-88552776 | MS.gene41652:CDS |
| GTTCGTATGGTGGATTTCGG+AGG | 0.592589 | 3.4:+88552131 | None:intergenic |
| AGAAGCCGAAGCCGTAGCAA+AGG | 0.592956 | 3.4:-88549333 | MS.gene41652:CDS |
| AGATCGATTCGGTCTCGCAA+CGG | 0.594209 | 3.4:+88552532 | None:intergenic |
| TGATTGAAGAGCCTTTGCTA+CGG | 0.596284 | 3.4:+88549322 | None:intergenic |
| ACGAGCGAGACGCTGTGCGG+CGG | 0.598377 | 3.4:+88552697 | None:intergenic |
| AGCTGCTTTGCGTCAAAGAG+AGG | 0.599240 | 3.4:-88549918 | MS.gene41652:intron |
| GTCTCGCAACGGAAATCGGA+GGG | 0.602538 | 3.4:+88552543 | None:intergenic |
| CCGCGTGTAGACTGGACTCT+CGG | 0.604412 | 3.4:+88552853 | None:intergenic |
| AAATCCTCACAATCATGGAC+CGG | 0.605575 | 3.4:-88552883 | None:intergenic |
| GCTGATCGAACCGAAACCGC+CGG | 0.607453 | 3.4:+88552185 | None:intergenic |
| AAGGAGGCGGAGCACTGTAA+CGG | 0.610453 | 3.4:+88552621 | None:intergenic |
| CACCATACGAACGCCTATGG+CGG | 0.612551 | 3.4:-88552120 | MS.gene41652:CDS |
| TCATGGCTGCAAAACAAACA+CGG | 0.613528 | 3.4:-88549550 | MS.gene41652:CDS |
| AACACGGAATGAAAGGGATG+AGG | 0.620060 | 3.4:-88549534 | MS.gene41652:CDS |
| CAATCAGGAATAAAGAGAAG+AGG | 0.620486 | 3.4:-88552076 | MS.gene41652:intron |
| AATCGATCAGCCTTCAGAGT+CGG | 0.621223 | 3.4:-88545305 | MS.gene41652:CDS |
| CGGCTCGGTCCTACTTCCAC+CGG | 0.622316 | 3.4:-88552761 | MS.gene41652:CDS |
| TACTCAGCTAAGACTAGCAG+AGG | 0.623006 | 3.4:-88550575 | MS.gene41652:intron |
| TCACGATGAAGTGTCTGAGT+CGG | 0.626398 | 3.4:+88545258 | None:intergenic |
| TGTTGGCTTGCTCGCTACTG+GGG | 0.628223 | 3.4:-88549159 | MS.gene41652:CDS |
| ATCATCAGCTGGAAGACCGG+CGG | 0.633397 | 3.4:-88552201 | MS.gene41652:CDS |
| CACAGTCCAAGTATGAACAT+TGG | 0.636014 | 3.4:-88548912 | MS.gene41652:CDS |
| TGGGGTCTTTCTGTAAAACA+TGG | 0.652306 | 3.4:-88549141 | MS.gene41652:intron |
| GCAACTTAACTCCAAAGACA+CGG | 0.656597 | 3.4:-88550896 | MS.gene41652:CDS |
| CAACTTAACTCCAAAGACAC+GGG | 0.658234 | 3.4:-88550895 | MS.gene41652:CDS |
| CTACCTGAATTTCGACACGA+AGG | 0.659616 | 3.4:+88549501 | None:intergenic |
| AGAAGTGGAGACCAGATCCA+GGG | 0.665136 | 3.4:-88550542 | MS.gene41652:CDS |
| GGTCTCGCAACGGAAATCGG+AGG | 0.666488 | 3.4:+88552542 | None:intergenic |
| TACCTGAATTTCGACACGAA+GGG | 0.669846 | 3.4:+88549502 | None:intergenic |
| GTAAATACTATACTTCATCA+CGG | 0.671876 | 3.4:+88550848 | None:intergenic |
| GAATCGATCTCCTTCTCCTG+CGG | 0.678655 | 3.4:-88552519 | MS.gene41652:intron |
| TGATATAAATGATCTTGCCG+GGG | 0.682107 | 3.4:-88548690 | MS.gene41652:CDS |
| TGCCTGATAGTGATGTCTGG+TGG | 0.682242 | 3.4:+88550916 | None:intergenic |
| GACACGAGCGAGACGCTGTG+CGG | 0.698792 | 3.4:+88552694 | None:intergenic |
| TTGGGCTAATGCAAGCACAA+CGG | 0.701529 | 3.4:+88548447 | None:intergenic |
| CCGAGAGTCCAGTCTACACG+CGG | 0.705247 | 3.4:-88552853 | MS.gene41652:CDS |
| ATTGTTGGAGGATCAATCGG+AGG | 0.708364 | 3.4:+88552095 | None:intergenic |
| TTTGATGGTGGAGAGACCGG+TGG | 0.710364 | 3.4:+88552745 | None:intergenic |
| AAGTTGGTGACTGTCCACTG+CGG | 0.748822 | 3.4:+88546484 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 88545258 | 88552891 | 88545258 | ID=MS.gene41652 |
| chr3.4 | mRNA | 88545258 | 88552891 | 88545258 | ID=MS.gene41652.t1;Parent=MS.gene41652 |
| chr3.4 | exon | 88552520 | 88552891 | 88552520 | ID=MS.gene41652.t1.exon1;Parent=MS.gene41652.t1 |
| chr3.4 | CDS | 88552520 | 88552891 | 88552520 | ID=cds.MS.gene41652.t1;Parent=MS.gene41652.t1 |
| chr3.4 | exon | 88552077 | 88552264 | 88552077 | ID=MS.gene41652.t1.exon2;Parent=MS.gene41652.t1 |
| chr3.4 | CDS | 88552077 | 88552264 | 88552077 | ID=cds.MS.gene41652.t1;Parent=MS.gene41652.t1 |
| chr3.4 | exon | 88550861 | 88550942 | 88550861 | ID=MS.gene41652.t1.exon3;Parent=MS.gene41652.t1 |
| chr3.4 | CDS | 88550861 | 88550942 | 88550861 | ID=cds.MS.gene41652.t1;Parent=MS.gene41652.t1 |
| chr3.4 | exon | 88550671 | 88550712 | 88550671 | ID=MS.gene41652.t1.exon4;Parent=MS.gene41652.t1 |
| chr3.4 | CDS | 88550671 | 88550712 | 88550671 | ID=cds.MS.gene41652.t1;Parent=MS.gene41652.t1 |
| chr3.4 | exon | 88550528 | 88550590 | 88550528 | ID=MS.gene41652.t1.exon5;Parent=MS.gene41652.t1 |
| chr3.4 | CDS | 88550528 | 88550590 | 88550528 | ID=cds.MS.gene41652.t1;Parent=MS.gene41652.t1 |
| chr3.4 | exon | 88550040 | 88550089 | 88550040 | ID=MS.gene41652.t1.exon6;Parent=MS.gene41652.t1 |
| chr3.4 | CDS | 88550040 | 88550089 | 88550040 | ID=cds.MS.gene41652.t1;Parent=MS.gene41652.t1 |
| chr3.4 | exon | 88549919 | 88549946 | 88549919 | ID=MS.gene41652.t1.exon7;Parent=MS.gene41652.t1 |
| chr3.4 | CDS | 88549919 | 88549946 | 88549919 | ID=cds.MS.gene41652.t1;Parent=MS.gene41652.t1 |
| chr3.4 | exon | 88549505 | 88549579 | 88549505 | ID=MS.gene41652.t1.exon8;Parent=MS.gene41652.t1 |
| chr3.4 | CDS | 88549505 | 88549579 | 88549505 | ID=cds.MS.gene41652.t1;Parent=MS.gene41652.t1 |
| chr3.4 | exon | 88549286 | 88549396 | 88549286 | ID=MS.gene41652.t1.exon9;Parent=MS.gene41652.t1 |
| chr3.4 | CDS | 88549286 | 88549396 | 88549286 | ID=cds.MS.gene41652.t1;Parent=MS.gene41652.t1 |
| chr3.4 | exon | 88549142 | 88549202 | 88549142 | ID=MS.gene41652.t1.exon10;Parent=MS.gene41652.t1 |
| chr3.4 | CDS | 88549142 | 88549202 | 88549142 | ID=cds.MS.gene41652.t1;Parent=MS.gene41652.t1 |
| chr3.4 | exon | 88548836 | 88548952 | 88548836 | ID=MS.gene41652.t1.exon11;Parent=MS.gene41652.t1 |
| chr3.4 | CDS | 88548836 | 88548952 | 88548836 | ID=cds.MS.gene41652.t1;Parent=MS.gene41652.t1 |
| chr3.4 | exon | 88548628 | 88548746 | 88548628 | ID=MS.gene41652.t1.exon12;Parent=MS.gene41652.t1 |
| chr3.4 | CDS | 88548628 | 88548746 | 88548628 | ID=cds.MS.gene41652.t1;Parent=MS.gene41652.t1 |
| chr3.4 | exon | 88548410 | 88548479 | 88548410 | ID=MS.gene41652.t1.exon13;Parent=MS.gene41652.t1 |
| chr3.4 | CDS | 88548410 | 88548479 | 88548410 | ID=cds.MS.gene41652.t1;Parent=MS.gene41652.t1 |
| chr3.4 | exon | 88547801 | 88547842 | 88547801 | ID=MS.gene41652.t1.exon14;Parent=MS.gene41652.t1 |
| chr3.4 | CDS | 88547801 | 88547842 | 88547801 | ID=cds.MS.gene41652.t1;Parent=MS.gene41652.t1 |
| chr3.4 | exon | 88546940 | 88546980 | 88546940 | ID=MS.gene41652.t1.exon15;Parent=MS.gene41652.t1 |
| chr3.4 | CDS | 88546940 | 88546980 | 88546940 | ID=cds.MS.gene41652.t1;Parent=MS.gene41652.t1 |
| chr3.4 | exon | 88546466 | 88546592 | 88546466 | ID=MS.gene41652.t1.exon16;Parent=MS.gene41652.t1 |
| chr3.4 | CDS | 88546466 | 88546592 | 88546466 | ID=cds.MS.gene41652.t1;Parent=MS.gene41652.t1 |
| chr3.4 | exon | 88545258 | 88545397 | 88545258 | ID=MS.gene41652.t1.exon17;Parent=MS.gene41652.t1 |
| chr3.4 | CDS | 88545258 | 88545397 | 88545258 | ID=cds.MS.gene41652.t1;Parent=MS.gene41652.t1 |
| Gene Sequence |
| Protein sequence |
