Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62900.t1 | XP_003608711.1 | 98.4 | 248 | 4 | 0 | 1 | 248 | 1 | 248 | 3.10E-132 | 481.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62900.t1 | Q94EI3 | 64.9 | 245 | 81 | 2 | 4 | 248 | 6 | 245 | 5.4e-85 | 315.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62900.t1 | G7JIW5 | 98.4 | 248 | 4 | 0 | 1 | 248 | 1 | 248 | 2.2e-132 | 481.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene62900 | MS.gene049255 | PPI |
| MS.gene62900 | MS.gene40919 | PPI |
| MS.gene62900 | MS.gene013288 | PPI |
| MS.gene62900 | MS.gene06371 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62900.t1 | MTR_4g100930 | 98.387 | 248 | 4 | 0 | 1 | 248 | 1 | 248 | 0.0 | 500 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62900.t1 | AT3G03490 | 65.462 | 249 | 77 | 3 | 4 | 248 | 5 | 248 | 2.82e-109 | 315 |
| MS.gene62900.t1 | AT5G17550 | 64.898 | 245 | 81 | 2 | 4 | 248 | 6 | 245 | 1.16e-107 | 311 |
| MS.gene62900.t1 | AT5G17550 | 66.837 | 196 | 60 | 2 | 53 | 248 | 1 | 191 | 3.33e-87 | 257 |
Find 72 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCACATTATACAACAATT+TGG | 0.240762 | 8.1:+22332338 | None:intergenic |
| CTTTCTCCTATTTCCTTCAT+TGG | 0.270847 | 8.1:+22333204 | None:intergenic |
| TTCAGAGACATGAGCATCTT+TGG | 0.287426 | 8.1:+22334951 | None:intergenic |
| GCTGAACCAATGAAGGAAAT+AGG | 0.321677 | 8.1:-22333210 | MS.gene62900:CDS |
| CGGTGCTGGTGTTGATGATT+TGG | 0.326883 | 8.1:-22334857 | MS.gene62900:CDS |
| TGAGAACCATCAAGCATTTC+CGG | 0.327165 | 8.1:+22332362 | None:intergenic |
| GGGGTTCAAGGATTGGGATT+AGG | 0.328924 | 8.1:-22335018 | MS.gene62900:CDS |
| CAAACTAAAGAGGCTGTTAA+AGG | 0.336372 | 8.1:-22334907 | MS.gene62900:CDS |
| CCCTCAGGGGTTCAAGGATT+GGG | 0.349196 | 8.1:-22335024 | MS.gene62900:CDS |
| ATATTCTTCTTTGCTTAAGT+TGG | 0.359988 | 8.1:+22333152 | None:intergenic |
| AGCTCTTGAACAATATCATT+TGG | 0.381715 | 8.1:+22333009 | None:intergenic |
| AAGAATTTATGTTGAGGGTC+TGG | 0.401327 | 8.1:+22335182 | None:intergenic |
| AACCCACCCGGTGCCGGTGC+TGG | 0.407959 | 8.1:-22334871 | MS.gene62900:CDS |
| CTGAAGCTCTCAACAAGCTC+AGG | 0.411444 | 8.1:-22334933 | MS.gene62900:CDS |
| AAGATGGTATGATGGAGGAT+TGG | 0.415614 | 8.1:-22334831 | MS.gene62900:CDS |
| TCTCTACCCTCAGGGGTTCA+AGG | 0.415668 | 8.1:-22335030 | MS.gene62900:CDS |
| AGATGGTATGATGGAGGATT+GGG | 0.420998 | 8.1:-22334830 | MS.gene62900:CDS |
| ACCCTCAGGGGTTCAAGGAT+TGG | 0.424572 | 8.1:-22335025 | MS.gene62900:CDS |
| AAACAGTTTGAAGAGCTTGC+TGG | 0.427973 | 8.1:-22334805 | MS.gene62900:CDS |
| AAGGCTGGCTAAATCGAAAT+CGG | 0.440434 | 8.1:+22332981 | None:intergenic |
| TGAAGAGCTTGCTGGCTCTC+AGG | 0.449155 | 8.1:-22334797 | MS.gene62900:intron |
| AAGGGAAGAATTTATGTTGA+GGG | 0.458376 | 8.1:+22335177 | None:intergenic |
| GGTGCTGGTGTTGATGATTT+GGG | 0.463131 | 8.1:-22334856 | MS.gene62900:CDS |
| TTCATTAACCCACCCGGTGC+CGG | 0.470725 | 8.1:-22334877 | MS.gene62900:CDS |
| CGGGTGGGTTAATGAATTCA+AGG | 0.477559 | 8.1:+22334884 | None:intergenic |
| TTTGTTCGCAGTTTGTTCTC+CGG | 0.479800 | 8.1:+22335065 | None:intergenic |
| AACTTACAACTGGCCAAGGC+TGG | 0.488235 | 8.1:+22332966 | None:intergenic |
| TTATGCTCTTCCAACCACTT+AGG | 0.502187 | 8.1:+22333177 | None:intergenic |
| ATCAACACCAGCACCGGCAC+CGG | 0.505652 | 8.1:+22334864 | None:intergenic |
| AGATCTCCGGAAATGCTTGA+TGG | 0.505855 | 8.1:-22332368 | MS.gene62900:CDS |
| GGACAGAAGTTGTTGCATCA+TGG | 0.507558 | 8.1:+22333245 | None:intergenic |
| GCGTATTACTGTCGAGAAGT+TGG | 0.507825 | 8.1:+22335328 | None:intergenic |
| GTTGATGATTTGGGTAAAGA+TGG | 0.510217 | 8.1:-22334847 | MS.gene62900:CDS |
| TCTTGAACAATATCATTTGG+AGG | 0.510987 | 8.1:+22333012 | None:intergenic |
| GTTCGTATTGGTGTGAATAC+CGG | 0.512716 | 8.1:+22333127 | None:intergenic |
| GATACTTGCTGAACCAATGA+AGG | 0.517457 | 8.1:-22333217 | MS.gene62900:CDS |
| GATTTCGATTTAGCCAGCCT+TGG | 0.517633 | 8.1:-22332979 | MS.gene62900:CDS |
| GAGTCACCTTCTCTACCCTC+AGG | 0.523000 | 8.1:-22335039 | MS.gene62900:CDS |
| GGTTCCGTATCAGTTCGTAT+TGG | 0.524014 | 8.1:+22333115 | None:intergenic |
| ACATAAATTCTTCCCTTCCA+AGG | 0.524040 | 8.1:-22335171 | MS.gene62900:intron |
| CACACCAATACGAACTGATA+CGG | 0.527644 | 8.1:-22333119 | MS.gene62900:CDS |
| TTAGGACATGGAATCTATTG+TGG | 0.529712 | 8.1:-22333271 | MS.gene62900:intron |
| TGGTTCAGCAAGTATCTCCT+TGG | 0.529723 | 8.1:+22333224 | None:intergenic |
| AGGCTGGCTAAATCGAAATC+GGG | 0.532111 | 8.1:+22332982 | None:intergenic |
| AGTGAAAGACTGACCTTGGA+AGG | 0.534487 | 8.1:+22335158 | None:intergenic |
| CCCAATCCTTGAACCCCTGA+GGG | 0.538180 | 8.1:+22335024 | None:intergenic |
| GAAGGGAAGAATTTATGTTG+AGG | 0.539226 | 8.1:+22335176 | None:intergenic |
| GAGAAGTTGGTCGAGGTCGT+CGG | 0.540233 | 8.1:+22335341 | None:intergenic |
| CAAATCATCAACACCAGCAC+CGG | 0.541279 | 8.1:+22334858 | None:intergenic |
| GCTCAGGGAGCAAACTAAAG+AGG | 0.542628 | 8.1:-22334917 | MS.gene62900:CDS |
| CTTGAATTCATTAACCCACC+CGG | 0.551766 | 8.1:-22334883 | MS.gene62900:CDS |
| TTTGGGTAAAGATGGTATGA+TGG | 0.563025 | 8.1:-22334839 | MS.gene62900:CDS |
| CAATGAAGGAAATAGGAGAA+AGG | 0.569986 | 8.1:-22333203 | MS.gene62900:CDS |
| AAGGAACTTACAACTGGCCA+AGG | 0.573694 | 8.1:+22332962 | None:intergenic |
| GTCGTCGGAGTGGTCAGCCA+TGG | 0.574664 | 8.1:+22335356 | None:intergenic |
| AGAAAGGTATCCTAAGTGGT+TGG | 0.579134 | 8.1:-22333187 | MS.gene62900:CDS |
| AGTCACCTTCTCTACCCTCA+GGG | 0.581172 | 8.1:-22335038 | MS.gene62900:CDS |
| TACTGTCGAGAAGTTGGTCG+AGG | 0.581215 | 8.1:+22335334 | None:intergenic |
| GGGTAAAGATGGTATGATGG+AGG | 0.584034 | 8.1:-22334836 | MS.gene62900:CDS |
| TGAACCCCTGAGGGTAGAGA+AGG | 0.596742 | 8.1:+22335033 | None:intergenic |
| CACCAGCACCGGCACCGGGT+GGG | 0.597723 | 8.1:+22334869 | None:intergenic |
| TAAGCAAAGAAGAATATGAC+CGG | 0.598976 | 8.1:-22333146 | MS.gene62900:CDS |
| TCAACACCAGCACCGGCACC+GGG | 0.601415 | 8.1:+22334865 | None:intergenic |
| ATGCAGAAAATGCAAGAATG+TGG | 0.608329 | 8.1:-22333039 | MS.gene62900:CDS |
| TAGGAGAAAGGTATCCTAAG+TGG | 0.608549 | 8.1:-22333191 | MS.gene62900:CDS |
| GATGCAACAACTTCTGTCCA+AGG | 0.611456 | 8.1:-22333241 | MS.gene62900:CDS |
| TGAAGCTCTCAACAAGCTCA+GGG | 0.635760 | 8.1:-22334932 | MS.gene62900:CDS |
| ACACCAGCACCGGCACCGGG+TGG | 0.640271 | 8.1:+22334868 | None:intergenic |
| TCCCAATCCTTGAACCCCTG+AGG | 0.641178 | 8.1:+22335023 | None:intergenic |
| GTTGGTCGAGGTCGTCGGAG+TGG | 0.647012 | 8.1:+22335346 | None:intergenic |
| GTGAAAGACTGACCTTGGAA+GGG | 0.658584 | 8.1:+22335159 | None:intergenic |
| GTCACCTTCTCTACCCTCAG+GGG | 0.728145 | 8.1:-22335037 | MS.gene62900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATATACTATATGTATAA+AGG | + | chr8.1:22333328-22333347 | None:intergenic | 10.0% |
| !!! | TTTTAATACTAAAGAATAAT+AGG | + | chr8.1:22332980-22332999 | None:intergenic | 10.0% |
| !! | AAAAAAATACAAAATTAGGA+AGG | + | chr8.1:22333539-22333558 | None:intergenic | 15.0% |
| !! | AAAAAATACAAAATTAGGAA+GGG | + | chr8.1:22333538-22333557 | None:intergenic | 15.0% |
| !! | AAGTGAAAATAATGAATAAA+AGG | + | chr8.1:22332564-22332583 | None:intergenic | 15.0% |
| !! | GTTTATTTATTTATTAGAAC+CGG | - | chr8.1:22332610-22332629 | MS.gene62900:intron | 15.0% |
| !!! | AATATTTCAGTTCATATTTT+TGG | - | chr8.1:22334940-22334959 | MS.gene62900:CDS | 15.0% |
| !!! | CCAAAAATTTCATTTTTAAT+TGG | - | chr8.1:22333852-22333871 | MS.gene62900:intron | 15.0% |
| !!! | CCAATTAAAAATGAAATTTT+TGG | + | chr8.1:22333855-22333874 | None:intergenic | 15.0% |
| !!! | TAAATCATTTTAATGTAAAG+AGG | - | chr8.1:22333639-22333658 | MS.gene62900:intron | 15.0% |
| !!! | TTAATAATTTTTTTAGGACA+TGG | - | chr8.1:22334411-22334430 | MS.gene62900:intron | 15.0% |
| !! | AAATCATTCATTGAGTATTT+AGG | + | chr8.1:22334865-22334884 | None:intergenic | 20.0% |
| !! | ATTTGAAAAGCAAGAAAAAA+GGG | - | chr8.1:22332707-22332726 | MS.gene62900:intron | 20.0% |
| !! | GGAAACTTGATTAATAAAAA+TGG | + | chr8.1:22333517-22333536 | None:intergenic | 20.0% |
| !! | TTATTTATTTACTTTCACTG+AGG | - | chr8.1:22335031-22335050 | MS.gene62900:CDS | 20.0% |
| !!! | AAAAAAACTAGTTTCTTTCA+TGG | + | chr8.1:22334089-22334108 | None:intergenic | 20.0% |
| !!! | ATCTTCTAAGAATAAACTTA+TGG | - | chr8.1:22333390-22333409 | MS.gene62900:intron | 20.0% |
| !!! | CTTTTTCATAAACTTCATTA+AGG | + | chr8.1:22334603-22334622 | None:intergenic | 20.0% |
| !!! | TGTATGTTTTCATTTTGTTA+TGG | + | chr8.1:22333710-22333729 | None:intergenic | 20.0% |
| !!! | TTTCTATTCAATCTTTTTTC+AGG | - | chr8.1:22332474-22332493 | MS.gene62900:intron | 20.0% |
| ! | AAAACAGTAATTGACAATCA+TGG | + | chr8.1:22334114-22334133 | None:intergenic | 25.0% |
| ! | AATATGATATGACTACTCTT+AGG | - | chr8.1:22332923-22332942 | MS.gene62900:intron | 25.0% |
| ! | ACATTAAAATGATTTACGCA+AGG | + | chr8.1:22333635-22333654 | None:intergenic | 25.0% |
| ! | ATACTGTGATAAAATCAAGA+AGG | + | chr8.1:22334754-22334773 | None:intergenic | 25.0% |
| ! | ATATTCTTCTTTGCTTAAGT+TGG | + | chr8.1:22334545-22334564 | None:intergenic | 25.0% |
| ! | ATTTCCAAACTATAGTATAG+CGG | + | chr8.1:22333231-22333250 | None:intergenic | 25.0% |
| ! | CAAAAAGTAAAAGATGTAGT+AGG | - | chr8.1:22333748-22333767 | MS.gene62900:intron | 25.0% |
| ! | CATATCAAATAGAACATTGT+TGG | - | chr8.1:22335072-22335091 | MS.gene62900:intron | 25.0% |
| ! | GAAGTTTATGAAAAAGATTC+TGG | - | chr8.1:22334607-22334626 | MS.gene62900:intron | 25.0% |
| ! | GATTTGAAAAGCAAGAAAAA+AGG | - | chr8.1:22332706-22332725 | MS.gene62900:intron | 25.0% |
| ! | GCATAAAAGAAATATGTAAG+TGG | - | chr8.1:22333089-22333108 | MS.gene62900:CDS | 25.0% |
| ! | GGAATTTGACTAATAGTAAT+AGG | - | chr8.1:22334890-22334909 | MS.gene62900:CDS | 25.0% |
| ! | GGATAAAAGAAATATGTAAG+TGG | - | chr8.1:22333201-22333220 | MS.gene62900:CDS | 25.0% |
| ! | GTATAAAGGAAATATGTAAG+TGG | + | chr8.1:22333314-22333333 | None:intergenic | 25.0% |
| ! | TAATCATAGTTAATGTGCTT+TGG | - | chr8.1:22333173-22333192 | MS.gene62900:CDS | 25.0% |
| !! | ACAAAGGTATAAATCAACAA+TGG | + | chr8.1:22335201-22335220 | None:intergenic | 25.0% |
| !! | ACTCAATGAATGATTTTTCA+TGG | - | chr8.1:22334869-22334888 | MS.gene62900:CDS | 25.0% |
| !! | AGGAATTATTGCTATTAAAC+TGG | - | chr8.1:22335116-22335135 | MS.gene62900:intron | 25.0% |
| !! | AGTGAAATTTTCAAATTCTG+AGG | + | chr8.1:22334190-22334209 | None:intergenic | 25.0% |
| !! | ATAATAGGCAAAAAGCATAA+AGG | + | chr8.1:22332965-22332984 | None:intergenic | 25.0% |
| !!! | TTTTTCTTGCTTTTCAAATC+AGG | + | chr8.1:22332706-22332725 | None:intergenic | 25.0% |
| AAGAATTAGAGATAAGAGAG+AGG | + | chr8.1:22332456-22332475 | None:intergenic | 30.0% | |
| AAGGGAAGAATTTATGTTGA+GGG | + | chr8.1:22332520-22332539 | None:intergenic | 30.0% | |
| AATGTACAATGTTCAAATCC+CGG | - | chr8.1:22333467-22333486 | MS.gene62900:intron | 30.0% | |
| ACTACTTGTCATAAAAGACA+TGG | + | chr8.1:22333669-22333688 | None:intergenic | 30.0% | |
| AGAATTAGAGATAAGAGAGA+GGG | + | chr8.1:22332455-22332474 | None:intergenic | 30.0% | |
| AGCTCTTGAACAATATCATT+TGG | + | chr8.1:22334688-22334707 | None:intergenic | 30.0% | |
| AGTAAAAGATGTAGTAGGTT+AGG | - | chr8.1:22333753-22333772 | MS.gene62900:intron | 30.0% | |
| ATTTCCAAACTATAGTACAC+CGG | + | chr8.1:22333119-22333138 | None:intergenic | 30.0% | |
| CCAATTTATTTGAGTGAGTA+TGG | + | chr8.1:22334981-22335000 | None:intergenic | 30.0% | |
| CCATACTCACTCAAATAAAT+TGG | - | chr8.1:22334978-22334997 | MS.gene62900:CDS | 30.0% | |
| CTCTTAACTAGACACTTATT+TGG | + | chr8.1:22333783-22333802 | None:intergenic | 30.0% | |
| GATTTGAACATTGTACATTG+AGG | + | chr8.1:22333466-22333485 | None:intergenic | 30.0% | |
| TAAGCAAAGAAGAATATGAC+CGG | - | chr8.1:22334548-22334567 | MS.gene62900:intron | 30.0% | |
| TCTGAACTAAAAAAGAGACT+AGG | - | chr8.1:22333581-22333600 | MS.gene62900:intron | 30.0% | |
| TCTTGAACAATATCATTTGG+AGG | + | chr8.1:22334685-22334704 | None:intergenic | 30.0% | |
| TGATGTCACACATAATATGT+AGG | + | chr8.1:22335282-22335301 | None:intergenic | 30.0% | |
| TTTCCAAACTATAGTATAGC+GGG | + | chr8.1:22333230-22333249 | None:intergenic | 30.0% | |
| ! | ATTATGTGATCTAACTTGCA+AGG | - | chr8.1:22335096-22335115 | MS.gene62900:intron | 30.0% |
| ! | GTTTGAGATTGAGTTAAAGA+AGG | + | chr8.1:22332587-22332606 | None:intergenic | 30.0% |
| !! | AGTTAATGTGCTTTGGAATT+TGG | - | chr8.1:22333180-22333199 | MS.gene62900:CDS | 30.0% |
| !!! | AAATTTTCAAATTCTGAGGC+AGG | + | chr8.1:22334186-22334205 | None:intergenic | 30.0% |
| AAGAATTTATGTTGAGGGTC+TGG | + | chr8.1:22332515-22332534 | None:intergenic | 35.0% | |
| ACATAAATTCTTCCCTTCCA+AGG | - | chr8.1:22332523-22332542 | MS.gene62900:intron | 35.0% | |
| ATAAGTGTCTAGTTAAGAGC+AGG | - | chr8.1:22333784-22333803 | MS.gene62900:intron | 35.0% | |
| ATCAAGAAGGAACTTACAAC+TGG | + | chr8.1:22334741-22334760 | None:intergenic | 35.0% | |
| ATGCAGAAAATGCAAGAATG+TGG | - | chr8.1:22334655-22334674 | MS.gene62900:intron | 35.0% | |
| ATTTACTTTCACTGAGGAGA+GGG | - | chr8.1:22335037-22335056 | MS.gene62900:CDS | 35.0% | |
| CAAACTAAAGAGGCTGTTAA+AGG | - | chr8.1:22332787-22332806 | MS.gene62900:intron | 35.0% | |
| CAAGAAAAAAGGGAAACAGA+AGG | - | chr8.1:22332717-22332736 | MS.gene62900:intron | 35.0% | |
| CAATGAAGGAAATAGGAGAA+AGG | - | chr8.1:22334491-22334510 | MS.gene62900:intron | 35.0% | |
| CTTTCTCCTATTTCCTTCAT+TGG | + | chr8.1:22334493-22334512 | None:intergenic | 35.0% | |
| GAACTAAAAAAGAGACTAGG+AGG | - | chr8.1:22333584-22333603 | MS.gene62900:intron | 35.0% | |
| GAAGGGAAGAATTTATGTTG+AGG | + | chr8.1:22332521-22332540 | None:intergenic | 35.0% | |
| GATGGTAGTAAAATGATCGT+TGG | - | chr8.1:22333489-22333508 | MS.gene62900:intron | 35.0% | |
| GGAACTATGTGTAAGGAATT+AGG | + | chr8.1:22334165-22334184 | None:intergenic | 35.0% | |
| TAATCATAGTTAACGCGCTT+TGG | - | chr8.1:22333061-22333080 | MS.gene62900:CDS | 35.0% | |
| TATTTACTTTCACTGAGGAG+AGG | - | chr8.1:22335036-22335055 | MS.gene62900:CDS | 35.0% | |
| TGAAGCAACACTTTGATCTA+AGG | + | chr8.1:22334230-22334249 | None:intergenic | 35.0% | |
| TTAGGACATGGAATCTATTG+TGG | - | chr8.1:22334423-22334442 | MS.gene62900:intron | 35.0% | |
| TTATGGCAATGATACACATG+AGG | - | chr8.1:22333407-22333426 | MS.gene62900:intron | 35.0% | |
| TTCATTGTAACCAAATGCAG+TGG | - | chr8.1:22333987-22334006 | MS.gene62900:intron | 35.0% | |
| TTGGGTTCTTATGTGTCAAT+CGG | - | chr8.1:22334029-22334048 | MS.gene62900:intron | 35.0% | |
| TTGTTATGGCTCATTGTCAA+AGG | + | chr8.1:22333696-22333715 | None:intergenic | 35.0% | |
| TTTCCAAACTATAGTACACC+GGG | + | chr8.1:22333118-22333137 | None:intergenic | 35.0% | |
| TTTGGGTAAAGATGGTATGA+TGG | - | chr8.1:22332855-22332874 | MS.gene62900:intron | 35.0% | |
| ! | AAGTATTACTGTCTGAAACC+TGG | - | chr8.1:22333918-22333937 | MS.gene62900:intron | 35.0% |
| ! | AAGTTATCAGAAGAGCACAA+AGG | + | chr8.1:22335217-22335236 | None:intergenic | 35.0% |
| ! | ACGATCATTTTACTACCATC+CGG | + | chr8.1:22333489-22333508 | None:intergenic | 35.0% |
| ! | GTTGATGAGTTACTCAGTAT+TGG | - | chr8.1:22334258-22334277 | MS.gene62900:intron | 35.0% |
| ! | TGTTAGTGATTAGCTGCATT+TGG | - | chr8.1:22333036-22333055 | MS.gene62900:CDS | 35.0% |
| !! | GTTGATGATTTGGGTAAAGA+TGG | - | chr8.1:22332847-22332866 | MS.gene62900:intron | 35.0% |
| !!! | CAATCTTTTTTCAGGTGCTT+TGG | - | chr8.1:22332482-22332501 | MS.gene62900:intron | 35.0% |
| AAACAGTTTGAAGAGCTTGC+TGG | - | chr8.1:22332889-22332908 | MS.gene62900:intron | 40.0% | |
| AGTTTCTTTCATGGTGCAAG+TGG | + | chr8.1:22334080-22334099 | None:intergenic | 40.0% | |
| ATGTGTAAGGAATTAGGCAG+AGG | + | chr8.1:22334159-22334178 | None:intergenic | 40.0% | |
| ATTAGAGATAAGAGAGAGGG+CGG | + | chr8.1:22332452-22332471 | None:intergenic | 40.0% | |
| CACACCAATACGAACTGATA+CGG | - | chr8.1:22334575-22334594 | MS.gene62900:intron | 40.0% | |
| CATGTACCTCTCTAAACTGT+AGG | + | chr8.1:22333952-22333971 | None:intergenic | 40.0% | |
| CTTACTGTATGCAACACCTT+GGG | - | chr8.1:22334011-22334030 | MS.gene62900:intron | 40.0% | |
| CTTGAATTCATTAACCCACC+CGG | - | chr8.1:22332811-22332830 | MS.gene62900:intron | 40.0% | |
| GAAATATGTAAGTGGTGTCC+CGG | - | chr8.1:22333097-22333116 | MS.gene62900:CDS | 40.0% | |
| GATTGACACATAAGAACCCA+AGG | + | chr8.1:22334030-22334049 | None:intergenic | 40.0% | |
| GCTGAACCAATGAAGGAAAT+AGG | - | chr8.1:22334484-22334503 | MS.gene62900:intron | 40.0% | |
| GTTCTTATGTGTCAATCGGA+TGG | - | chr8.1:22334033-22334052 | MS.gene62900:intron | 40.0% | |
| TACAATGTTCAAATCCCGGA+TGG | - | chr8.1:22333471-22333490 | MS.gene62900:intron | 40.0% | |
| TACAGTAAGACCACTGCATT+TGG | + | chr8.1:22334000-22334019 | None:intergenic | 40.0% | |
| TCTTACTGTATGCAACACCT+TGG | - | chr8.1:22334010-22334029 | MS.gene62900:intron | 40.0% | |
| TGAGAACCATCAAGCATTTC+CGG | + | chr8.1:22335335-22335354 | None:intergenic | 40.0% | |
| TGTCCCGCTATACTATAGTT+TGG | - | chr8.1:22333224-22333243 | MS.gene62900:CDS | 40.0% | |
| TTATGCTCTTCCAACCACTT+AGG | + | chr8.1:22334520-22334539 | None:intergenic | 40.0% | |
| TTCAGAGACATGAGCATCTT+TGG | + | chr8.1:22332746-22332765 | None:intergenic | 40.0% | |
| TTTACTTTCACTGAGGAGAG+GGG | - | chr8.1:22335038-22335057 | MS.gene62900:CDS | 40.0% | |
| ! | AAGATGGTATGATGGAGGAT+TGG | - | chr8.1:22332863-22332882 | MS.gene62900:intron | 40.0% |
| ! | AAGGCTGGCTAAATCGAAAT+CGG | + | chr8.1:22334716-22334735 | None:intergenic | 40.0% |
| ! | AGATGGTATGATGGAGGATT+GGG | - | chr8.1:22332864-22332883 | MS.gene62900:intron | 40.0% |
| ! | CATTTTCTTCTGCAGATCTC+CGG | - | chr8.1:22335313-22335332 | MS.gene62900:intron | 40.0% |
| ! | CGATCATTTTACTACCATCC+GGG | + | chr8.1:22333488-22333507 | None:intergenic | 40.0% |
| ! | GAAGTGTTTGACATTGTCCA+AGG | - | chr8.1:22333885-22333904 | MS.gene62900:intron | 40.0% |
| ! | GATACTTGCTGAACCAATGA+AGG | - | chr8.1:22334477-22334496 | MS.gene62900:intron | 40.0% |
| ! | GTTCGTATTGGTGTGAATAC+CGG | + | chr8.1:22334570-22334589 | None:intergenic | 40.0% |
| ! | TTGAGTGAGTATGGAGTATC+AGG | + | chr8.1:22334972-22334991 | None:intergenic | 40.0% |
| ! | TTGTATTGTGTCGTTCGTAC+TGG | + | chr8.1:22333282-22333301 | None:intergenic | 40.0% |
| ! | TTTGTTCGCAGTTTGTTCTC+CGG | + | chr8.1:22332632-22332651 | None:intergenic | 40.0% |
| !! | AGAAAGGTATCCTAAGTGGT+TGG | - | chr8.1:22334507-22334526 | MS.gene62900:intron | 40.0% |
| !! | TAGGAGAAAGGTATCCTAAG+TGG | - | chr8.1:22334503-22334522 | MS.gene62900:intron | 40.0% |
| !!! | ACAGCAGCTGCTTTTGTTAT+TGG | + | chr8.1:22334331-22334350 | None:intergenic | 40.0% |
| AAGGAACTTACAACTGGCCA+AGG | + | chr8.1:22334735-22334754 | None:intergenic | 45.0% | |
| AATACTTCTCCGACACTCCT+TGG | + | chr8.1:22333905-22333924 | None:intergenic | 45.0% | |
| AGATCTCCGGAAATGCTTGA+TGG | - | chr8.1:22335326-22335345 | MS.gene62900:intron | 45.0% | |
| AGTGAAAGACTGACCTTGGA+AGG | + | chr8.1:22332539-22332558 | None:intergenic | 45.0% | |
| CAAATCATCAACACCAGCAC+CGG | + | chr8.1:22332839-22332858 | None:intergenic | 45.0% | |
| CAGAATATCCTGAAGCTACC+AGG | - | chr8.1:22335142-22335161 | MS.gene62900:intron | 45.0% | |
| GATGCAACAACTTCTGTCCA+AGG | - | chr8.1:22334453-22334472 | MS.gene62900:intron | 45.0% | |
| GATTTCGATTTAGCCAGCCT+TGG | - | chr8.1:22334715-22334734 | MS.gene62900:intron | 45.0% | |
| GCGTATTACTGTCGAGAAGT+TGG | + | chr8.1:22332369-22332388 | None:intergenic | 45.0% | |
| GGACAGAAGTTGTTGCATCA+TGG | + | chr8.1:22334452-22334471 | None:intergenic | 45.0% | |
| GGGTAAAGATGGTATGATGG+AGG | - | chr8.1:22332858-22332877 | MS.gene62900:intron | 45.0% | |
| GGTTCCGTATCAGTTCGTAT+TGG | + | chr8.1:22334582-22334601 | None:intergenic | 45.0% | |
| GTCTAGTTAAGAGCAGGTGT+TGG | - | chr8.1:22333790-22333809 | MS.gene62900:intron | 45.0% | |
| GTGAAAGACTGACCTTGGAA+GGG | + | chr8.1:22332538-22332557 | None:intergenic | 45.0% | |
| TGAAGCTCTCAACAAGCTCA+GGG | - | chr8.1:22332762-22332781 | MS.gene62900:intron | 45.0% | |
| TGAGGCAGGAACTATGTGTA+AGG | + | chr8.1:22334172-22334191 | None:intergenic | 45.0% | |
| TGGTTCAGCAAGTATCTCCT+TGG | + | chr8.1:22334473-22334492 | None:intergenic | 45.0% | |
| TGTCCCGGTGTACTATAGTT+TGG | - | chr8.1:22333112-22333131 | MS.gene62900:CDS | 45.0% | |
| ! | AGGCTGGCTAAATCGAAATC+GGG | + | chr8.1:22334715-22334734 | None:intergenic | 45.0% |
| ! | ATTACTGTCTGAAACCTGGC+TGG | - | chr8.1:22333922-22333941 | MS.gene62900:intron | 45.0% |
| ! | TGACATTGTCCAAGGAGTGT+CGG | - | chr8.1:22333893-22333912 | MS.gene62900:intron | 45.0% |
| !! | CGGGTGGGTTAATGAATTCA+AGG | + | chr8.1:22332813-22332832 | None:intergenic | 45.0% |
| !! | GGTGCTGGTGTTGATGATTT+GGG | - | chr8.1:22332838-22332857 | MS.gene62900:intron | 45.0% |
| !! | TTAAGAGCAGGTGTTGGCTT+GGG | - | chr8.1:22333796-22333815 | MS.gene62900:intron | 45.0% |
| !! | AAAAAAAAAAATACAAAATT+AGG | + | chr8.1:22333543-22333562 | None:intergenic | 5.0% |
| !!! | ATAATGTTAATAATTTTTTT+AGG | - | chr8.1:22334405-22334424 | MS.gene62900:intron | 5.0% |
| AACTTACAACTGGCCAAGGC+TGG | + | chr8.1:22334731-22334750 | None:intergenic | 50.0% | |
| AGCCTATGATCCTAGGCACT+TGG | - | chr8.1:22335169-22335188 | MS.gene62900:intron | 50.0% | |
| AGGCCTTAGCCTATGATCCT+AGG | - | chr8.1:22335162-22335181 | MS.gene62900:intron | 50.0% | |
| AGTCACCTTCTCTACCCTCA+GGG | - | chr8.1:22332656-22332675 | MS.gene62900:intron | 50.0% | |
| CTGAAGCTCTCAACAAGCTC+AGG | - | chr8.1:22332761-22332780 | MS.gene62900:intron | 50.0% | |
| GCTCAGGGAGCAAACTAAAG+AGG | - | chr8.1:22332777-22332796 | MS.gene62900:intron | 50.0% | |
| GGCACACCTACAGTTTAGAG+AGG | - | chr8.1:22333943-22333962 | MS.gene62900:intron | 50.0% | |
| GGGGTTCAAGGATTGGGATT+AGG | - | chr8.1:22332676-22332695 | MS.gene62900:intron | 50.0% | |
| GGTGAGTGAAAGACTGACCT+TGG | + | chr8.1:22332543-22332562 | None:intergenic | 50.0% | |
| GTGCCTAGGATCATAGGCTA+AGG | + | chr8.1:22335168-22335187 | None:intergenic | 50.0% | |
| TAGGATCATAGGCTAAGGCC+TGG | + | chr8.1:22335163-22335182 | None:intergenic | 50.0% | |
| TGCCAAGTGCCTAGGATCAT+AGG | + | chr8.1:22335174-22335193 | None:intergenic | 50.0% | |
| ! | CACATGAGGTGCTAGCTTGA+TGG | - | chr8.1:22333421-22333440 | MS.gene62900:intron | 50.0% |
| ! | TACTGTCGAGAAGTTGGTCG+AGG | + | chr8.1:22332363-22332382 | None:intergenic | 50.0% |
| !! | CGGTGCTGGTGTTGATGATT+TGG | - | chr8.1:22332837-22332856 | MS.gene62900:intron | 50.0% |
| !! | GTTAAGAGCAGGTGTTGGCT+TGG | - | chr8.1:22333795-22333814 | MS.gene62900:intron | 50.0% |
| AAACTGTAGGTGTGCCAGCC+AGG | + | chr8.1:22333939-22333958 | None:intergenic | 55.0% | |
| ACCCTCAGGGGTTCAAGGAT+TGG | - | chr8.1:22332669-22332688 | MS.gene62900:intron | 55.0% | |
| AGATAAGAGAGAGGGCGGTG+AGG | + | chr8.1:22332447-22332466 | None:intergenic | 55.0% | |
| ATGGATGCTGCCAAGTGCCT+AGG | + | chr8.1:22335182-22335201 | None:intergenic | 55.0% | |
| CCCAATCCTTGAACCCCTGA+GGG | + | chr8.1:22332673-22332692 | None:intergenic | 55.0% | |
| CCCTCAGGGGTTCAAGGATT+GGG | - | chr8.1:22332670-22332689 | MS.gene62900:intron | 55.0% | |
| GAGTCACCTTCTCTACCCTC+AGG | - | chr8.1:22332655-22332674 | MS.gene62900:intron | 55.0% | |
| GTCACCTTCTCTACCCTCAG+GGG | - | chr8.1:22332657-22332676 | MS.gene62900:intron | 55.0% | |
| TCCCAATCCTTGAACCCCTG+AGG | + | chr8.1:22332674-22332693 | None:intergenic | 55.0% | |
| TCTCTACCCTCAGGGGTTCA+AGG | - | chr8.1:22332664-22332683 | MS.gene62900:intron | 55.0% | |
| TGAACCCCTGAGGGTAGAGA+AGG | + | chr8.1:22332664-22332683 | None:intergenic | 55.0% | |
| TTCATTAACCCACCCGGTGC+CGG | - | chr8.1:22332817-22332836 | MS.gene62900:intron | 55.0% | |
| ! | GAGAAGTTGGTCGAGGTCGT+CGG | + | chr8.1:22332356-22332375 | None:intergenic | 55.0% |
| !! | TGAAGAGCTTGCTGGCTCTC+AGG | - | chr8.1:22332897-22332916 | MS.gene62900:intron | 55.0% |
| AAGAGAGAGGGCGGTGAGGA+GGG | + | chr8.1:22332443-22332462 | None:intergenic | 60.0% | |
| GGCTAAGGCCTGGTAGCTTC+AGG | + | chr8.1:22335153-22335172 | None:intergenic | 60.0% | |
| TAAGAGAGAGGGCGGTGAGG+AGG | + | chr8.1:22332444-22332463 | None:intergenic | 60.0% | |
| !! | ATCAACACCAGCACCGGCAC+CGG | + | chr8.1:22332833-22332852 | None:intergenic | 60.0% |
| GTTGGTCGAGGTCGTCGGAG+TGG | + | chr8.1:22332351-22332370 | None:intergenic | 65.0% | |
| !! | CAGGTGTTGGCTTGGGCGCT+TGG | - | chr8.1:22333803-22333822 | MS.gene62900:intron | 65.0% |
| !! | GTGTTGGCTTGGGCGCTTGG+CGG | - | chr8.1:22333806-22333825 | MS.gene62900:intron | 65.0% |
| !! | TCAACACCAGCACCGGCACC+GGG | + | chr8.1:22332832-22332851 | None:intergenic | 65.0% |
| !! | AACCCACCCGGTGCCGGTGC+TGG | - | chr8.1:22332823-22332842 | MS.gene62900:intron | 75.0% |
| !! | ACACCAGCACCGGCACCGGG+TGG | + | chr8.1:22332829-22332848 | None:intergenic | 75.0% |
| !! | CACCAGCACCGGCACCGGGT+GGG | + | chr8.1:22332828-22332847 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 22332340 | 22335376 | 22332340 | ID=MS.gene62900 |
| chr8.1 | mRNA | 22332340 | 22335376 | 22332340 | ID=MS.gene62900.t1;Parent=MS.gene62900 |
| chr8.1 | exon | 22335337 | 22335376 | 22335337 | ID=MS.gene62900.t1.exon1;Parent=MS.gene62900.t1 |
| chr8.1 | CDS | 22335337 | 22335376 | 22335337 | ID=cds.MS.gene62900.t1;Parent=MS.gene62900.t1 |
| chr8.1 | exon | 22335172 | 22335220 | 22335172 | ID=MS.gene62900.t1.exon2;Parent=MS.gene62900.t1 |
| chr8.1 | CDS | 22335172 | 22335220 | 22335172 | ID=cds.MS.gene62900.t1;Parent=MS.gene62900.t1 |
| chr8.1 | exon | 22334798 | 22335089 | 22334798 | ID=MS.gene62900.t1.exon3;Parent=MS.gene62900.t1 |
| chr8.1 | CDS | 22334798 | 22335089 | 22334798 | ID=cds.MS.gene62900.t1;Parent=MS.gene62900.t1 |
| chr8.1 | exon | 22332973 | 22333289 | 22332973 | ID=MS.gene62900.t1.exon4;Parent=MS.gene62900.t1 |
| chr8.1 | CDS | 22332973 | 22333289 | 22332973 | ID=cds.MS.gene62900.t1;Parent=MS.gene62900.t1 |
| chr8.1 | exon | 22332340 | 22332388 | 22332340 | ID=MS.gene62900.t1.exon5;Parent=MS.gene62900.t1 |
| chr8.1 | CDS | 22332340 | 22332388 | 22332340 | ID=cds.MS.gene62900.t1;Parent=MS.gene62900.t1 |
| Gene Sequence |
| Protein sequence |
