Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71947.t1 | XP_003608711.1 | 98.4 | 248 | 4 | 0 | 1 | 248 | 1 | 248 | 3.10E-132 | 481.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71947.t1 | Q94EI3 | 64.9 | 245 | 81 | 2 | 4 | 248 | 6 | 245 | 5.4e-85 | 315.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71947.t1 | G7JIW5 | 98.4 | 248 | 4 | 0 | 1 | 248 | 1 | 248 | 2.2e-132 | 481.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene06371 | MS.gene71947 | PPI |
| MS.gene049255 | MS.gene71947 | PPI |
| MS.gene013288 | MS.gene71947 | PPI |
| MS.gene40919 | MS.gene71947 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71947.t1 | MTR_4g100930 | 98.387 | 248 | 4 | 0 | 1 | 248 | 1 | 248 | 0.0 | 500 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71947.t1 | AT3G03490 | 65.462 | 249 | 77 | 3 | 4 | 248 | 5 | 248 | 2.82e-109 | 315 |
| MS.gene71947.t1 | AT5G17550 | 64.898 | 245 | 81 | 2 | 4 | 248 | 6 | 245 | 1.16e-107 | 311 |
| MS.gene71947.t1 | AT5G17550 | 66.837 | 196 | 60 | 2 | 53 | 248 | 1 | 191 | 3.33e-87 | 257 |
Find 72 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCACATTATACAACAATT+TGG | 0.240762 | 8.3:+20172414 | None:intergenic |
| CTTTCTCCTATTTCCTTCAT+TGG | 0.270847 | 8.3:+20173261 | None:intergenic |
| TTCAGAGACATGAGCATCTT+TGG | 0.287426 | 8.3:+20175008 | None:intergenic |
| GCTGAACCAATGAAGGAAAT+AGG | 0.321677 | 8.3:-20173267 | MS.gene71947:CDS |
| CGGTGCTGGTGTTGATGATT+TGG | 0.326883 | 8.3:-20174914 | MS.gene71947:CDS |
| TGAGAACCATCAAGCATTTC+CGG | 0.327165 | 8.3:+20172438 | None:intergenic |
| GGGGTTCAAGGATTGGGATT+AGG | 0.328924 | 8.3:-20175075 | MS.gene71947:CDS |
| CAAACTAAAGAGGCTGTTAA+AGG | 0.336372 | 8.3:-20174964 | MS.gene71947:CDS |
| CCCTCAGGGGTTCAAGGATT+GGG | 0.349196 | 8.3:-20175081 | MS.gene71947:CDS |
| ATATTCTTCTTTGCTTAAGT+TGG | 0.359988 | 8.3:+20173209 | None:intergenic |
| AGCTCTTGAACAATATCATT+TGG | 0.381715 | 8.3:+20173066 | None:intergenic |
| AAGAATTTATGTTGAGGGTC+TGG | 0.401327 | 8.3:+20175239 | None:intergenic |
| AACCCACCCGGTGCCGGTGC+TGG | 0.407959 | 8.3:-20174928 | MS.gene71947:CDS |
| CTGAAGCTCTCAACAAGCTC+AGG | 0.411444 | 8.3:-20174990 | MS.gene71947:CDS |
| AAGATGGTATGATGGAGGAT+TGG | 0.415614 | 8.3:-20174888 | MS.gene71947:CDS |
| TCTCTACCCTCAGGGGTTCA+AGG | 0.415668 | 8.3:-20175087 | MS.gene71947:CDS |
| AGATGGTATGATGGAGGATT+GGG | 0.420998 | 8.3:-20174887 | MS.gene71947:CDS |
| ACCCTCAGGGGTTCAAGGAT+TGG | 0.424572 | 8.3:-20175082 | MS.gene71947:CDS |
| AAACAGTTTGAAGAGCTTGC+TGG | 0.427973 | 8.3:-20174862 | MS.gene71947:CDS |
| AAGGCTGGCTAAATCGAAAT+CGG | 0.440434 | 8.3:+20173038 | None:intergenic |
| TGAAGAGCTTGCTGGCTCTC+AGG | 0.449155 | 8.3:-20174854 | MS.gene71947:intron |
| AAGGGAAGAATTTATGTTGA+GGG | 0.458376 | 8.3:+20175234 | None:intergenic |
| GGTGCTGGTGTTGATGATTT+GGG | 0.463131 | 8.3:-20174913 | MS.gene71947:CDS |
| TTCATTAACCCACCCGGTGC+CGG | 0.470725 | 8.3:-20174934 | MS.gene71947:CDS |
| CGGGTGGGTTAATGAATTCA+AGG | 0.477559 | 8.3:+20174941 | None:intergenic |
| TTTGTTCGCAGTTTGTTCTC+CGG | 0.479800 | 8.3:+20175122 | None:intergenic |
| AACTTACAACTGGCCAAGGC+TGG | 0.488235 | 8.3:+20173023 | None:intergenic |
| GCGTATTACTGTCGAGAAGT+TGG | 0.489645 | 8.3:+20175401 | None:intergenic |
| TTATGCTCTTCCAACCACTT+AGG | 0.502187 | 8.3:+20173234 | None:intergenic |
| ATCAACACCAGCACCGGCAC+CGG | 0.505652 | 8.3:+20174921 | None:intergenic |
| AGATCTCCGGAAATGCTTGA+TGG | 0.505855 | 8.3:-20172444 | MS.gene71947:CDS |
| GGACAGAAGTTGTTGCATCA+TGG | 0.507558 | 8.3:+20173302 | None:intergenic |
| GTTGATGATTTGGGTAAAGA+TGG | 0.510217 | 8.3:-20174904 | MS.gene71947:CDS |
| TCTTGAACAATATCATTTGG+AGG | 0.510987 | 8.3:+20173069 | None:intergenic |
| GTTCGTATTGGTGTGAATAC+CGG | 0.512716 | 8.3:+20173184 | None:intergenic |
| GATACTTGCTGAACCAATGA+AGG | 0.517457 | 8.3:-20173274 | MS.gene71947:CDS |
| GATTTCGATTTAGCCAGCCT+TGG | 0.517633 | 8.3:-20173036 | MS.gene71947:CDS |
| GAGTCACCTTCTCTACCCTC+AGG | 0.523000 | 8.3:-20175096 | MS.gene71947:CDS |
| GGTTCCGTATCAGTTCGTAT+TGG | 0.524014 | 8.3:+20173172 | None:intergenic |
| ACATAAATTCTTCCCTTCCA+AGG | 0.524040 | 8.3:-20175228 | MS.gene71947:intron |
| CACACCAATACGAACTGATA+CGG | 0.527644 | 8.3:-20173176 | MS.gene71947:CDS |
| TTAGGACATGGAATCTATTG+TGG | 0.529712 | 8.3:-20173328 | MS.gene71947:intron |
| TGGTTCAGCAAGTATCTCCT+TGG | 0.529723 | 8.3:+20173281 | None:intergenic |
| AGGCTGGCTAAATCGAAATC+GGG | 0.532111 | 8.3:+20173039 | None:intergenic |
| AGTGAAAGACTGACCTTGGA+AGG | 0.534487 | 8.3:+20175215 | None:intergenic |
| CCCAATCCTTGAACCCCTGA+GGG | 0.538180 | 8.3:+20175081 | None:intergenic |
| GAAGGGAAGAATTTATGTTG+AGG | 0.539226 | 8.3:+20175233 | None:intergenic |
| GAGAAGTTGGTCGAGGTCGT+CGG | 0.540233 | 8.3:+20175414 | None:intergenic |
| CAAATCATCAACACCAGCAC+CGG | 0.541279 | 8.3:+20174915 | None:intergenic |
| GCTCAGGGAGCAAACTAAAG+AGG | 0.542628 | 8.3:-20174974 | MS.gene71947:CDS |
| CTTGAATTCATTAACCCACC+CGG | 0.551766 | 8.3:-20174940 | MS.gene71947:CDS |
| TTTGGGTAAAGATGGTATGA+TGG | 0.563025 | 8.3:-20174896 | MS.gene71947:CDS |
| CAATGAAGGAAATAGGAGAA+AGG | 0.569986 | 8.3:-20173260 | MS.gene71947:CDS |
| AAGGAACTTACAACTGGCCA+AGG | 0.573694 | 8.3:+20173019 | None:intergenic |
| GTCGTCGGAGTGGTCAGCCA+TGG | 0.574664 | 8.3:+20175429 | None:intergenic |
| AGAAAGGTATCCTAAGTGGT+TGG | 0.579134 | 8.3:-20173244 | MS.gene71947:CDS |
| AGTCACCTTCTCTACCCTCA+GGG | 0.581172 | 8.3:-20175095 | MS.gene71947:CDS |
| TACTGTCGAGAAGTTGGTCG+AGG | 0.581215 | 8.3:+20175407 | None:intergenic |
| GGGTAAAGATGGTATGATGG+AGG | 0.584034 | 8.3:-20174893 | MS.gene71947:CDS |
| TGAACCCCTGAGGGTAGAGA+AGG | 0.596742 | 8.3:+20175090 | None:intergenic |
| CACCAGCACCGGCACCGGGT+GGG | 0.597723 | 8.3:+20174926 | None:intergenic |
| TAAGCAAAGAAGAATATGAC+CGG | 0.598976 | 8.3:-20173203 | MS.gene71947:CDS |
| TCAACACCAGCACCGGCACC+GGG | 0.601415 | 8.3:+20174922 | None:intergenic |
| ATGCAGAAAATGCAAGAATG+TGG | 0.608329 | 8.3:-20173096 | MS.gene71947:CDS |
| TAGGAGAAAGGTATCCTAAG+TGG | 0.608549 | 8.3:-20173248 | MS.gene71947:CDS |
| GATGCAACAACTTCTGTCCA+AGG | 0.611456 | 8.3:-20173298 | MS.gene71947:CDS |
| TGAAGCTCTCAACAAGCTCA+GGG | 0.635760 | 8.3:-20174989 | MS.gene71947:CDS |
| ACACCAGCACCGGCACCGGG+TGG | 0.640271 | 8.3:+20174925 | None:intergenic |
| TCCCAATCCTTGAACCCCTG+AGG | 0.641178 | 8.3:+20175080 | None:intergenic |
| GTTGGTCGAGGTCGTCGGAG+TGG | 0.647012 | 8.3:+20175419 | None:intergenic |
| GTGAAAGACTGACCTTGGAA+GGG | 0.658584 | 8.3:+20175216 | None:intergenic |
| GTCACCTTCTCTACCCTCAG+GGG | 0.728145 | 8.3:-20175094 | MS.gene71947:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATATACTATATGTATAA+AGG | + | chr8.3:20173420-20173439 | None:intergenic | 10.0% |
| !!! | TTTTAATACTAAAGAATAAT+AGG | + | chr8.3:20173072-20173091 | None:intergenic | 10.0% |
| !! | AAAAAAATACAAAATTAGGA+AGG | + | chr8.3:20173631-20173650 | None:intergenic | 15.0% |
| !! | AAAAAATACAAAATTAGGAA+GGG | + | chr8.3:20173630-20173649 | None:intergenic | 15.0% |
| !! | AAGTGAAAATAATGAATAAA+AGG | + | chr8.3:20172656-20172675 | None:intergenic | 15.0% |
| !! | GTTTATTTATTTATTAGAAC+CGG | - | chr8.3:20172702-20172721 | MS.gene71947:intron | 15.0% |
| !!! | AATATTTCAGTTCATATTTT+TGG | - | chr8.3:20175032-20175051 | MS.gene71947:CDS | 15.0% |
| !!! | CCAAAAATTTCATTTTTAAT+TGG | - | chr8.3:20173944-20173963 | MS.gene71947:intron | 15.0% |
| !!! | CCAATTAAAAATGAAATTTT+TGG | + | chr8.3:20173947-20173966 | None:intergenic | 15.0% |
| !!! | TAAATCATTTTAATGTAAAG+AGG | - | chr8.3:20173731-20173750 | MS.gene71947:intron | 15.0% |
| !!! | TTAATAATTTTTTTAGGACA+TGG | - | chr8.3:20174503-20174522 | MS.gene71947:intron | 15.0% |
| !! | AAATCATTCATTGAGTATTT+AGG | + | chr8.3:20174957-20174976 | None:intergenic | 20.0% |
| !! | ATTTGAAAAGCAAGAAAAAA+GGG | - | chr8.3:20172799-20172818 | MS.gene71947:intron | 20.0% |
| !! | ATTTGGTATAATCATAGTTA+AGG | - | chr8.3:20173145-20173164 | MS.gene71947:CDS | 20.0% |
| !! | GGAAACTTGATTAATAAAAA+TGG | + | chr8.3:20173609-20173628 | None:intergenic | 20.0% |
| !! | TTATTTATTTACTTTCACTG+AGG | - | chr8.3:20175123-20175142 | MS.gene71947:CDS | 20.0% |
| !!! | AAAAAAACTAGTTTCTTTCA+TGG | + | chr8.3:20174181-20174200 | None:intergenic | 20.0% |
| !!! | ATCTTCTAAGAATAAACTTA+TGG | - | chr8.3:20173482-20173501 | MS.gene71947:intron | 20.0% |
| !!! | CTTTTTCATAAACTTCATTA+AGG | + | chr8.3:20174695-20174714 | None:intergenic | 20.0% |
| !!! | TGTATGTTTTCATTTTGTTA+TGG | + | chr8.3:20173802-20173821 | None:intergenic | 20.0% |
| !!! | TTTCTATTCAATCTTTTTTC+AGG | - | chr8.3:20172566-20172585 | MS.gene71947:intron | 20.0% |
| ! | AAAACAGTAATTGACAATCA+TGG | + | chr8.3:20174206-20174225 | None:intergenic | 25.0% |
| ! | AATATGATATGACTACTCTT+AGG | - | chr8.3:20173015-20173034 | MS.gene71947:intron | 25.0% |
| ! | ACATTAAAATGATTTACGCA+AGG | + | chr8.3:20173727-20173746 | None:intergenic | 25.0% |
| ! | ATACTGTGATAAAATCAAGA+AGG | + | chr8.3:20174846-20174865 | None:intergenic | 25.0% |
| ! | ATATTCTTCTTTGCTTAAGT+TGG | + | chr8.3:20174637-20174656 | None:intergenic | 25.0% |
| ! | CAAAAAGTAAAAGATGTAGT+AGG | - | chr8.3:20173840-20173859 | MS.gene71947:intron | 25.0% |
| ! | CATATCAAATAGAACATTGT+TGG | - | chr8.3:20175164-20175183 | MS.gene71947:intron | 25.0% |
| ! | GAAGTTTATGAAAAAGATTC+TGG | - | chr8.3:20174699-20174718 | MS.gene71947:intron | 25.0% |
| ! | GATTTGAAAAGCAAGAAAAA+AGG | - | chr8.3:20172798-20172817 | MS.gene71947:intron | 25.0% |
| ! | GCATAAAAGAAATATGTAAG+TGG | - | chr8.3:20173181-20173200 | MS.gene71947:CDS | 25.0% |
| ! | GGAATTTGACTAATAGTAAT+AGG | - | chr8.3:20174982-20175001 | MS.gene71947:CDS | 25.0% |
| ! | GTATAAAGGAAATATGTAAG+TGG | + | chr8.3:20173406-20173425 | None:intergenic | 25.0% |
| !! | ACAAAGGTATAAATCAACAA+TGG | + | chr8.3:20175274-20175293 | None:intergenic | 25.0% |
| !! | ACTCAATGAATGATTTTTCA+TGG | - | chr8.3:20174961-20174980 | MS.gene71947:CDS | 25.0% |
| !! | AGTGAAATTTTCAAATTCTG+AGG | + | chr8.3:20174282-20174301 | None:intergenic | 25.0% |
| !! | ATAATAGGCAAAAAGCATAA+AGG | + | chr8.3:20173057-20173076 | None:intergenic | 25.0% |
| !!! | TTTTTCTTGCTTTTCAAATC+AGG | + | chr8.3:20172798-20172817 | None:intergenic | 25.0% |
| AAGAATTAGAGATAAGAGAG+AGG | + | chr8.3:20172548-20172567 | None:intergenic | 30.0% | |
| AAGGGAAGAATTTATGTTGA+GGG | + | chr8.3:20172612-20172631 | None:intergenic | 30.0% | |
| AATGTACAATGTTCAAATCC+CGG | - | chr8.3:20173559-20173578 | MS.gene71947:intron | 30.0% | |
| ACTACTTGTCATAAAAGACA+TGG | + | chr8.3:20173761-20173780 | None:intergenic | 30.0% | |
| AGAATTAGAGATAAGAGAGA+GGG | + | chr8.3:20172547-20172566 | None:intergenic | 30.0% | |
| AGCTCTTGAACAATATCATT+TGG | + | chr8.3:20174780-20174799 | None:intergenic | 30.0% | |
| AGTAAAAGATGTAGTAGGTT+AGG | - | chr8.3:20173845-20173864 | MS.gene71947:intron | 30.0% | |
| ATTTCCAAACTATAGTACAC+CGG | + | chr8.3:20173211-20173230 | None:intergenic | 30.0% | |
| ATTTCCAAACTATAGTACAG+CGG | + | chr8.3:20173323-20173342 | None:intergenic | 30.0% | |
| CCAATTTATTTGAGTGAGTA+TGG | + | chr8.3:20175073-20175092 | None:intergenic | 30.0% | |
| CCATACTCACTCAAATAAAT+TGG | - | chr8.3:20175070-20175089 | MS.gene71947:CDS | 30.0% | |
| GATTTGAACATTGTACATTG+AGG | + | chr8.3:20173558-20173577 | None:intergenic | 30.0% | |
| TAAGCAAAGAAGAATATGAC+CGG | - | chr8.3:20174640-20174659 | MS.gene71947:intron | 30.0% | |
| TCTGAACTAAAAAAGAGACT+AGG | - | chr8.3:20173673-20173692 | MS.gene71947:intron | 30.0% | |
| TCTTGAACAATATCATTTGG+AGG | + | chr8.3:20174777-20174796 | None:intergenic | 30.0% | |
| TGATGTCACACATAATATGT+AGG | + | chr8.3:20175355-20175374 | None:intergenic | 30.0% | |
| TTATGTGATCTAACTTGAAC+TGG | - | chr8.3:20175189-20175208 | MS.gene71947:intron | 30.0% | |
| ! | GTTTGAGATTGAGTTAAAGA+AGG | + | chr8.3:20172679-20172698 | None:intergenic | 30.0% |
| !!! | AAATTTTCAAATTCTGAGGC+AGG | + | chr8.3:20174278-20174297 | None:intergenic | 30.0% |
| AAGAATTTATGTTGAGGGTC+TGG | + | chr8.3:20172607-20172626 | None:intergenic | 35.0% | |
| ACATAAATTCTTCCCTTCCA+AGG | - | chr8.3:20172615-20172634 | MS.gene71947:intron | 35.0% | |
| ATCAAGAAGGAACTTACAAC+TGG | + | chr8.3:20174833-20174852 | None:intergenic | 35.0% | |
| ATGCAGAAAATGCAAGAATG+TGG | - | chr8.3:20174747-20174766 | MS.gene71947:intron | 35.0% | |
| ATTTACTTTCACTGAGGAGA+GGG | - | chr8.3:20175129-20175148 | MS.gene71947:intron | 35.0% | |
| CAAACTAAAGAGGCTGTTAA+AGG | - | chr8.3:20172879-20172898 | MS.gene71947:intron | 35.0% | |
| CAAGAAAAAAGGGAAACAGA+AGG | - | chr8.3:20172809-20172828 | MS.gene71947:intron | 35.0% | |
| CAATGAAGGAAATAGGAGAA+AGG | - | chr8.3:20174583-20174602 | MS.gene71947:intron | 35.0% | |
| CTCTTAACTAGACACTTCTT+TGG | + | chr8.3:20173875-20173894 | None:intergenic | 35.0% | |
| CTTTCTCCTATTTCCTTCAT+TGG | + | chr8.3:20174585-20174604 | None:intergenic | 35.0% | |
| GAACTAAAAAAGAGACTAGG+AGG | - | chr8.3:20173676-20173695 | MS.gene71947:intron | 35.0% | |
| GAAGGGAAGAATTTATGTTG+AGG | + | chr8.3:20172613-20172632 | None:intergenic | 35.0% | |
| GATGGTAGTAAAATGATCGT+TGG | - | chr8.3:20173581-20173600 | MS.gene71947:intron | 35.0% | |
| GGAACTATGTGTAAGGAATT+AGG | + | chr8.3:20174257-20174276 | None:intergenic | 35.0% | |
| TAATCATAGTTAACGCGCTT+TGG | - | chr8.3:20173265-20173284 | MS.gene71947:CDS | 35.0% | |
| TATTTACTTTCACTGAGGAG+AGG | - | chr8.3:20175128-20175147 | MS.gene71947:intron | 35.0% | |
| TGAAGCAACACTTTGATCTA+AGG | + | chr8.3:20174322-20174341 | None:intergenic | 35.0% | |
| TTAGGACATGGAATCTATTG+TGG | - | chr8.3:20174515-20174534 | MS.gene71947:intron | 35.0% | |
| TTATGGCAATGATACACATG+AGG | - | chr8.3:20173499-20173518 | MS.gene71947:intron | 35.0% | |
| TTCATTGTAACCAAATGCAG+TGG | - | chr8.3:20174079-20174098 | MS.gene71947:intron | 35.0% | |
| TTGGGTTCTTATGTGTCAAT+CGG | - | chr8.3:20174121-20174140 | MS.gene71947:intron | 35.0% | |
| TTGTTATGGCTCATTGTCAA+AGG | + | chr8.3:20173788-20173807 | None:intergenic | 35.0% | |
| TTTCCAAACTATAGTACACC+GGG | + | chr8.3:20173210-20173229 | None:intergenic | 35.0% | |
| TTTCCAAACTATAGTACAGC+GGG | + | chr8.3:20173322-20173341 | None:intergenic | 35.0% | |
| TTTGGGTAAAGATGGTATGA+TGG | - | chr8.3:20172947-20172966 | MS.gene71947:intron | 35.0% | |
| ! | AAGTATTACTGTCTGAAACC+TGG | - | chr8.3:20174010-20174029 | MS.gene71947:intron | 35.0% |
| ! | AAGTTATCAGAAGAGCACAA+AGG | + | chr8.3:20175290-20175309 | None:intergenic | 35.0% |
| ! | ACGATCATTTTACTACCATC+CGG | + | chr8.3:20173581-20173600 | None:intergenic | 35.0% |
| ! | GTTGATGAGTTACTCAGTAT+TGG | - | chr8.3:20174350-20174369 | MS.gene71947:intron | 35.0% |
| ! | TAATCATAGTTAAGGCGCTT+TGG | - | chr8.3:20173153-20173172 | MS.gene71947:CDS | 35.0% |
| ! | TGTTAGTGATTAGCTGCATT+TGG | - | chr8.3:20173128-20173147 | MS.gene71947:CDS | 35.0% |
| !! | GTTGATGATTTGGGTAAAGA+TGG | - | chr8.3:20172939-20172958 | MS.gene71947:intron | 35.0% |
| !!! | CAATCTTTTTTCAGGTGCTT+TGG | - | chr8.3:20172574-20172593 | MS.gene71947:intron | 35.0% |
| AAACAGTTTGAAGAGCTTGC+TGG | - | chr8.3:20172981-20173000 | MS.gene71947:intron | 40.0% | |
| AGTTTCTTTCATGGTGCAAG+TGG | + | chr8.3:20174172-20174191 | None:intergenic | 40.0% | |
| ATGTGTAAGGAATTAGGCAG+AGG | + | chr8.3:20174251-20174270 | None:intergenic | 40.0% | |
| ATTAGAGATAAGAGAGAGGG+CGG | + | chr8.3:20172544-20172563 | None:intergenic | 40.0% | |
| CACACCAATACGAACTGATA+CGG | - | chr8.3:20174667-20174686 | MS.gene71947:intron | 40.0% | |
| CATGTACCTCTCTAAACTGT+AGG | + | chr8.3:20174044-20174063 | None:intergenic | 40.0% | |
| CTTACTGTATGCAACACCTT+GGG | - | chr8.3:20174103-20174122 | MS.gene71947:intron | 40.0% | |
| CTTGAATTCATTAACCCACC+CGG | - | chr8.3:20172903-20172922 | MS.gene71947:intron | 40.0% | |
| GAAATATGTAAGTGGTGTCC+CGG | - | chr8.3:20173189-20173208 | MS.gene71947:CDS | 40.0% | |
| GATTGACACATAAGAACCCA+AGG | + | chr8.3:20174122-20174141 | None:intergenic | 40.0% | |
| GCTGAACCAATGAAGGAAAT+AGG | - | chr8.3:20174576-20174595 | MS.gene71947:intron | 40.0% | |
| GTTCTTATGTGTCAATCGGA+TGG | - | chr8.3:20174125-20174144 | MS.gene71947:intron | 40.0% | |
| TACAATGTTCAAATCCCGGA+TGG | - | chr8.3:20173563-20173582 | MS.gene71947:intron | 40.0% | |
| TACAGTAAGACCACTGCATT+TGG | + | chr8.3:20174092-20174111 | None:intergenic | 40.0% | |
| TCTTACTGTATGCAACACCT+TGG | - | chr8.3:20174102-20174121 | MS.gene71947:intron | 40.0% | |
| TGAGAACCATCAAGCATTTC+CGG | + | chr8.3:20175408-20175427 | None:intergenic | 40.0% | |
| TTATGCTCTTCCAACCACTT+AGG | + | chr8.3:20174612-20174631 | None:intergenic | 40.0% | |
| TTCAGAGACATGAGCATCTT+TGG | + | chr8.3:20172838-20172857 | None:intergenic | 40.0% | |
| TTTACTTTCACTGAGGAGAG+GGG | - | chr8.3:20175130-20175149 | MS.gene71947:intron | 40.0% | |
| ! | AAGATGGTATGATGGAGGAT+TGG | - | chr8.3:20172955-20172974 | MS.gene71947:intron | 40.0% |
| ! | AAGGCTGGCTAAATCGAAAT+CGG | + | chr8.3:20174808-20174827 | None:intergenic | 40.0% |
| ! | AGATGGTATGATGGAGGATT+GGG | - | chr8.3:20172956-20172975 | MS.gene71947:intron | 40.0% |
| ! | CATTTTCTTCTGCAGATCTC+CGG | - | chr8.3:20175386-20175405 | MS.gene71947:intron | 40.0% |
| ! | CGATCATTTTACTACCATCC+GGG | + | chr8.3:20173580-20173599 | None:intergenic | 40.0% |
| ! | GAAGTGTTTGACATTGTCCA+AGG | - | chr8.3:20173977-20173996 | MS.gene71947:intron | 40.0% |
| ! | GATACTTGCTGAACCAATGA+AGG | - | chr8.3:20174569-20174588 | MS.gene71947:intron | 40.0% |
| ! | GTTCGTATTGGTGTGAATAC+CGG | + | chr8.3:20174662-20174681 | None:intergenic | 40.0% |
| ! | TTGAGTGAGTATGGAGTATC+AGG | + | chr8.3:20175064-20175083 | None:intergenic | 40.0% |
| ! | TTGTATTGTGTCGTTCGTAC+TGG | + | chr8.3:20173374-20173393 | None:intergenic | 40.0% |
| ! | TTTGTTCGCAGTTTGTTCTC+CGG | + | chr8.3:20172724-20172743 | None:intergenic | 40.0% |
| !! | AGAAAGGTATCCTAAGTGGT+TGG | - | chr8.3:20174599-20174618 | MS.gene71947:intron | 40.0% |
| !! | AGAAGTGTCTAGTTAAGAGC+AGG | - | chr8.3:20173876-20173895 | MS.gene71947:intron | 40.0% |
| !! | TAGGAGAAAGGTATCCTAAG+TGG | - | chr8.3:20174595-20174614 | MS.gene71947:intron | 40.0% |
| AAGGAACTTACAACTGGCCA+AGG | + | chr8.3:20174827-20174846 | None:intergenic | 45.0% | |
| AATACTTCTCCGACACTCCT+TGG | + | chr8.3:20173997-20174016 | None:intergenic | 45.0% | |
| AGATCTCCGGAAATGCTTGA+TGG | - | chr8.3:20175399-20175418 | MS.gene71947:intron | 45.0% | |
| AGTGAAAGACTGACCTTGGA+AGG | + | chr8.3:20172631-20172650 | None:intergenic | 45.0% | |
| CAAATCATCAACACCAGCAC+CGG | + | chr8.3:20172931-20172950 | None:intergenic | 45.0% | |
| CAGAATATCCTGAAGCTACC+AGG | - | chr8.3:20175215-20175234 | MS.gene71947:intron | 45.0% | |
| GATGCAACAACTTCTGTCCA+AGG | - | chr8.3:20174545-20174564 | MS.gene71947:intron | 45.0% | |
| GATTTCGATTTAGCCAGCCT+TGG | - | chr8.3:20174807-20174826 | MS.gene71947:intron | 45.0% | |
| GCGTATTACTGTCGAGAAGT+TGG | + | chr8.3:20172445-20172464 | None:intergenic | 45.0% | |
| GGACAGAAGTTGTTGCATCA+TGG | + | chr8.3:20174544-20174563 | None:intergenic | 45.0% | |
| GGGTAAAGATGGTATGATGG+AGG | - | chr8.3:20172950-20172969 | MS.gene71947:intron | 45.0% | |
| GGTTCCGTATCAGTTCGTAT+TGG | + | chr8.3:20174674-20174693 | None:intergenic | 45.0% | |
| GTCTAGTTAAGAGCAGGTGT+TGG | - | chr8.3:20173882-20173901 | MS.gene71947:intron | 45.0% | |
| GTGAAAGACTGACCTTGGAA+GGG | + | chr8.3:20172630-20172649 | None:intergenic | 45.0% | |
| TGAAGCTCTCAACAAGCTCA+GGG | - | chr8.3:20172854-20172873 | MS.gene71947:intron | 45.0% | |
| TGAGGCAGGAACTATGTGTA+AGG | + | chr8.3:20174264-20174283 | None:intergenic | 45.0% | |
| TGGTTCAGCAAGTATCTCCT+TGG | + | chr8.3:20174565-20174584 | None:intergenic | 45.0% | |
| TGTCCCGCTGTACTATAGTT+TGG | - | chr8.3:20173316-20173335 | MS.gene71947:CDS | 45.0% | |
| TGTCCCGGTGTACTATAGTT+TGG | - | chr8.3:20173204-20173223 | MS.gene71947:CDS | 45.0% | |
| ! | AGGCTGGCTAAATCGAAATC+GGG | + | chr8.3:20174807-20174826 | None:intergenic | 45.0% |
| ! | ATTACTGTCTGAAACCTGGC+TGG | - | chr8.3:20174014-20174033 | MS.gene71947:intron | 45.0% |
| ! | TGACATTGTCCAAGGAGTGT+CGG | - | chr8.3:20173985-20174004 | MS.gene71947:intron | 45.0% |
| !! | CGGGTGGGTTAATGAATTCA+AGG | + | chr8.3:20172905-20172924 | None:intergenic | 45.0% |
| !! | GGTGCTGGTGTTGATGATTT+GGG | - | chr8.3:20172930-20172949 | MS.gene71947:intron | 45.0% |
| !! | TTAAGAGCAGGTGTTGGCTT+GGG | - | chr8.3:20173888-20173907 | MS.gene71947:intron | 45.0% |
| !!! | GCAGCAGCTGCTTTTGTTAT+TGG | + | chr8.3:20174423-20174442 | None:intergenic | 45.0% |
| !! | AAAAAAAAAAATACAAAATT+AGG | + | chr8.3:20173635-20173654 | None:intergenic | 5.0% |
| !!! | ATAATGTTAATAATTTTTTT+AGG | - | chr8.3:20174497-20174516 | MS.gene71947:intron | 5.0% |
| AACTTACAACTGGCCAAGGC+TGG | + | chr8.3:20174823-20174842 | None:intergenic | 50.0% | |
| AGCCTATGATCCTAGGCACT+TGG | - | chr8.3:20175242-20175261 | MS.gene71947:CDS | 50.0% | |
| AGGCCTTAGCCTATGATCCT+AGG | - | chr8.3:20175235-20175254 | MS.gene71947:CDS | 50.0% | |
| AGTCACCTTCTCTACCCTCA+GGG | - | chr8.3:20172748-20172767 | MS.gene71947:intron | 50.0% | |
| CTGAAGCTCTCAACAAGCTC+AGG | - | chr8.3:20172853-20172872 | MS.gene71947:intron | 50.0% | |
| GCTCAGGGAGCAAACTAAAG+AGG | - | chr8.3:20172869-20172888 | MS.gene71947:intron | 50.0% | |
| GGCACACCTACAGTTTAGAG+AGG | - | chr8.3:20174035-20174054 | MS.gene71947:intron | 50.0% | |
| GGGGTTCAAGGATTGGGATT+AGG | - | chr8.3:20172768-20172787 | MS.gene71947:intron | 50.0% | |
| GGTGAGTGAAAGACTGACCT+TGG | + | chr8.3:20172635-20172654 | None:intergenic | 50.0% | |
| GTGCCTAGGATCATAGGCTA+AGG | + | chr8.3:20175241-20175260 | None:intergenic | 50.0% | |
| TAGGATCATAGGCTAAGGCC+TGG | + | chr8.3:20175236-20175255 | None:intergenic | 50.0% | |
| TGCCAAGTGCCTAGGATCAT+AGG | + | chr8.3:20175247-20175266 | None:intergenic | 50.0% | |
| ! | CACATGAGGTGCTAGCTTGA+TGG | - | chr8.3:20173513-20173532 | MS.gene71947:intron | 50.0% |
| ! | TACTGTCGAGAAGTTGGTCG+AGG | + | chr8.3:20172439-20172458 | None:intergenic | 50.0% |
| !! | CGGTGCTGGTGTTGATGATT+TGG | - | chr8.3:20172929-20172948 | MS.gene71947:intron | 50.0% |
| !! | GTTAAGAGCAGGTGTTGGCT+TGG | - | chr8.3:20173887-20173906 | MS.gene71947:intron | 50.0% |
| AAACTGTAGGTGTGCCAGCC+AGG | + | chr8.3:20174031-20174050 | None:intergenic | 55.0% | |
| ACCCTCAGGGGTTCAAGGAT+TGG | - | chr8.3:20172761-20172780 | MS.gene71947:intron | 55.0% | |
| AGATAAGAGAGAGGGCGGTG+AGG | + | chr8.3:20172539-20172558 | None:intergenic | 55.0% | |
| ATGGATGCTGCCAAGTGCCT+AGG | + | chr8.3:20175255-20175274 | None:intergenic | 55.0% | |
| CCCAATCCTTGAACCCCTGA+GGG | + | chr8.3:20172765-20172784 | None:intergenic | 55.0% | |
| CCCTCAGGGGTTCAAGGATT+GGG | - | chr8.3:20172762-20172781 | MS.gene71947:intron | 55.0% | |
| GAGTCACCTTCTCTACCCTC+AGG | - | chr8.3:20172747-20172766 | MS.gene71947:intron | 55.0% | |
| GTCACCTTCTCTACCCTCAG+GGG | - | chr8.3:20172749-20172768 | MS.gene71947:intron | 55.0% | |
| TCCCAATCCTTGAACCCCTG+AGG | + | chr8.3:20172766-20172785 | None:intergenic | 55.0% | |
| TCTCTACCCTCAGGGGTTCA+AGG | - | chr8.3:20172756-20172775 | MS.gene71947:intron | 55.0% | |
| TGAACCCCTGAGGGTAGAGA+AGG | + | chr8.3:20172756-20172775 | None:intergenic | 55.0% | |
| TTCATTAACCCACCCGGTGC+CGG | - | chr8.3:20172909-20172928 | MS.gene71947:intron | 55.0% | |
| ! | GAGAAGTTGGTCGAGGTCGT+CGG | + | chr8.3:20172432-20172451 | None:intergenic | 55.0% |
| !! | TGAAGAGCTTGCTGGCTCTC+AGG | - | chr8.3:20172989-20173008 | MS.gene71947:intron | 55.0% |
| AAGAGAGAGGGCGGTGAGGA+GGG | + | chr8.3:20172535-20172554 | None:intergenic | 60.0% | |
| GGCTAAGGCCTGGTAGCTTC+AGG | + | chr8.3:20175226-20175245 | None:intergenic | 60.0% | |
| TAAGAGAGAGGGCGGTGAGG+AGG | + | chr8.3:20172536-20172555 | None:intergenic | 60.0% | |
| !! | ATCAACACCAGCACCGGCAC+CGG | + | chr8.3:20172925-20172944 | None:intergenic | 60.0% |
| GTTGGTCGAGGTCGTCGGAG+TGG | + | chr8.3:20172427-20172446 | None:intergenic | 65.0% | |
| !! | CAGGTGTTGGCTTGGGCGCT+TGG | - | chr8.3:20173895-20173914 | MS.gene71947:intron | 65.0% |
| !! | GTGTTGGCTTGGGCGCTTGG+CGG | - | chr8.3:20173898-20173917 | MS.gene71947:intron | 65.0% |
| !! | TCAACACCAGCACCGGCACC+GGG | + | chr8.3:20172924-20172943 | None:intergenic | 65.0% |
| !! | AACCCACCCGGTGCCGGTGC+TGG | - | chr8.3:20172915-20172934 | MS.gene71947:intron | 75.0% |
| !! | ACACCAGCACCGGCACCGGG+TGG | + | chr8.3:20172921-20172940 | None:intergenic | 75.0% |
| !! | CACCAGCACCGGCACCGGGT+GGG | + | chr8.3:20172920-20172939 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 20172416 | 20175449 | 20172416 | ID=MS.gene71947 |
| chr8.3 | mRNA | 20172416 | 20175449 | 20172416 | ID=MS.gene71947.t1;Parent=MS.gene71947 |
| chr8.3 | exon | 20175410 | 20175449 | 20175410 | ID=MS.gene71947.t1.exon1;Parent=MS.gene71947.t1 |
| chr8.3 | CDS | 20175410 | 20175449 | 20175410 | ID=cds.MS.gene71947.t1;Parent=MS.gene71947.t1 |
| chr8.3 | exon | 20175229 | 20175277 | 20175229 | ID=MS.gene71947.t1.exon2;Parent=MS.gene71947.t1 |
| chr8.3 | CDS | 20175229 | 20175277 | 20175229 | ID=cds.MS.gene71947.t1;Parent=MS.gene71947.t1 |
| chr8.3 | exon | 20174855 | 20175146 | 20174855 | ID=MS.gene71947.t1.exon3;Parent=MS.gene71947.t1 |
| chr8.3 | CDS | 20174855 | 20175146 | 20174855 | ID=cds.MS.gene71947.t1;Parent=MS.gene71947.t1 |
| chr8.3 | exon | 20173030 | 20173346 | 20173030 | ID=MS.gene71947.t1.exon4;Parent=MS.gene71947.t1 |
| chr8.3 | CDS | 20173030 | 20173346 | 20173030 | ID=cds.MS.gene71947.t1;Parent=MS.gene71947.t1 |
| chr8.3 | exon | 20172416 | 20172464 | 20172416 | ID=MS.gene71947.t1.exon5;Parent=MS.gene71947.t1 |
| chr8.3 | CDS | 20172416 | 20172464 | 20172416 | ID=cds.MS.gene71947.t1;Parent=MS.gene71947.t1 |
| Gene Sequence |
| Protein sequence |
