Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013329.t1 | XP_003602583.1 | 98 | 637 | 13 | 0 | 38 | 674 | 1 | 637 | 0.00E+00 | 1305 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013329.t1 | Q9LSB1 | 67.7 | 637 | 185 | 6 | 55 | 674 | 22 | 654 | 6.3e-261 | 901.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013329.t1 | G7JBH4 | 98.0 | 637 | 13 | 0 | 38 | 674 | 1 | 637 | 0.0e+00 | 1305.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene013329 | MS.gene026687 | PPI |
| MS.gene013329 | MS.gene32326 | PPI |
| MS.gene013329 | MS.gene31842 | PPI |
| MS.gene013329 | MS.gene054153 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013329.t1 | MTR_3g095910 | 97.959 | 637 | 13 | 0 | 38 | 674 | 1 | 637 | 0.0 | 1306 |
| MS.gene013329.t1 | MTR_1g029130 | 66.773 | 626 | 196 | 5 | 60 | 674 | 3 | 627 | 0.0 | 877 |
| MS.gene013329.t1 | MTR_1g019540 | 48.247 | 485 | 228 | 9 | 165 | 630 | 55 | 535 | 3.28e-163 | 480 |
| MS.gene013329.t1 | MTR_1g019540 | 48.247 | 485 | 228 | 9 | 165 | 630 | 108 | 588 | 9.05e-163 | 481 |
| MS.gene013329.t1 | MTR_1g019530 | 45.582 | 498 | 253 | 9 | 147 | 630 | 91 | 584 | 6.80e-149 | 445 |
| MS.gene013329.t1 | MTR_1g082880 | 40.246 | 569 | 285 | 12 | 95 | 633 | 8 | 551 | 1.55e-138 | 417 |
| MS.gene013329.t1 | MTR_7g113610 | 40.381 | 525 | 273 | 10 | 141 | 636 | 48 | 561 | 1.96e-136 | 412 |
| MS.gene013329.t1 | MTR_1g080460 | 35.802 | 162 | 103 | 1 | 343 | 504 | 27 | 187 | 9.98e-28 | 118 |
| MS.gene013329.t1 | MTR_7g115460 | 35.119 | 168 | 108 | 1 | 337 | 504 | 30 | 196 | 1.72e-27 | 117 |
| MS.gene013329.t1 | MTR_7g109920 | 28.079 | 203 | 107 | 3 | 340 | 503 | 23 | 225 | 1.70e-17 | 83.6 |
| MS.gene013329.t1 | MTR_7g109920 | 28.079 | 203 | 107 | 3 | 340 | 503 | 23 | 225 | 6.48e-17 | 83.2 |
| MS.gene013329.t1 | MTR_1g084670 | 27.941 | 204 | 108 | 4 | 339 | 503 | 19 | 222 | 5.54e-16 | 79.0 |
| MS.gene013329.t1 | MTR_1g084670 | 27.481 | 262 | 134 | 9 | 336 | 553 | 16 | 265 | 6.80e-16 | 79.7 |
| MS.gene013329.t1 | MTR_1g084670 | 35.043 | 117 | 73 | 1 | 339 | 452 | 19 | 135 | 7.86e-16 | 77.8 |
| MS.gene013329.t1 | MTR_4g132185 | 26.961 | 204 | 110 | 3 | 339 | 503 | 20 | 223 | 1.76e-15 | 78.2 |
| MS.gene013329.t1 | MTR_5g012590 | 28.000 | 175 | 111 | 5 | 341 | 503 | 39 | 210 | 2.77e-14 | 76.3 |
| MS.gene013329.t1 | MTR_4g100950 | 26.163 | 172 | 118 | 4 | 341 | 503 | 37 | 208 | 1.81e-12 | 70.5 |
| MS.gene013329.t1 | MTR_7g111850 | 24.016 | 254 | 139 | 7 | 343 | 553 | 26 | 268 | 2.07e-12 | 69.3 |
| MS.gene013329.t1 | MTR_1g084660 | 26.255 | 259 | 128 | 9 | 336 | 553 | 16 | 252 | 1.27e-11 | 66.6 |
| MS.gene013329.t1 | MTR_1g084660 | 26.368 | 201 | 102 | 4 | 339 | 503 | 19 | 209 | 1.36e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013329.t1 | AT3G18660 | 67.290 | 642 | 189 | 6 | 50 | 674 | 17 | 654 | 0.0 | 887 |
| MS.gene013329.t1 | AT3G18660 | 66.822 | 642 | 188 | 6 | 50 | 674 | 17 | 650 | 0.0 | 878 |
| MS.gene013329.t1 | AT3G18660 | 66.667 | 642 | 188 | 6 | 50 | 674 | 17 | 649 | 0.0 | 876 |
| MS.gene013329.t1 | AT1G77130 | 63.065 | 620 | 192 | 9 | 42 | 650 | 1 | 594 | 0.0 | 788 |
| MS.gene013329.t1 | AT4G33330 | 50.823 | 486 | 217 | 9 | 165 | 633 | 43 | 523 | 1.06e-170 | 498 |
| MS.gene013329.t1 | AT4G33330 | 50.823 | 486 | 217 | 9 | 165 | 633 | 122 | 602 | 1.17e-169 | 499 |
| MS.gene013329.t1 | AT4G33330 | 50.823 | 486 | 217 | 9 | 165 | 633 | 111 | 591 | 1.45e-169 | 498 |
| MS.gene013329.t1 | AT4G33330 | 50.716 | 489 | 219 | 9 | 165 | 636 | 111 | 594 | 1.96e-169 | 499 |
| MS.gene013329.t1 | AT1G08990 | 44.490 | 490 | 243 | 8 | 165 | 632 | 79 | 561 | 1.70e-141 | 425 |
| MS.gene013329.t1 | AT1G54940 | 44.422 | 493 | 231 | 10 | 165 | 630 | 74 | 550 | 1.58e-136 | 412 |
| MS.gene013329.t1 | AT4G33330 | 50.000 | 350 | 154 | 8 | 165 | 497 | 122 | 467 | 3.04e-107 | 333 |
| MS.gene013329.t1 | AT5G18480 | 36.095 | 169 | 107 | 1 | 335 | 503 | 24 | 191 | 1.29e-29 | 124 |
| MS.gene013329.t1 | AT1G60470 | 27.413 | 259 | 131 | 7 | 340 | 553 | 21 | 267 | 1.14e-17 | 85.5 |
| MS.gene013329.t1 | AT1G60450 | 27.053 | 207 | 110 | 3 | 338 | 503 | 15 | 221 | 2.66e-16 | 81.3 |
| MS.gene013329.t1 | AT1G56600 | 26.357 | 258 | 133 | 7 | 341 | 553 | 21 | 266 | 5.95e-16 | 80.1 |
| MS.gene013329.t1 | AT1G09350 | 26.108 | 203 | 110 | 3 | 341 | 503 | 15 | 217 | 1.69e-15 | 79.0 |
| MS.gene013329.t1 | AT4G26250 | 25.806 | 217 | 120 | 4 | 341 | 516 | 24 | 240 | 1.98e-15 | 78.6 |
| MS.gene013329.t1 | AT5G30500 | 25.123 | 203 | 112 | 3 | 338 | 500 | 21 | 223 | 2.21e-14 | 73.9 |
| MS.gene013329.t1 | AT5G30500 | 32.203 | 118 | 77 | 1 | 338 | 452 | 21 | 138 | 1.99e-13 | 72.4 |
| MS.gene013329.t1 | AT2G47180 | 34.211 | 114 | 72 | 1 | 343 | 453 | 31 | 144 | 2.61e-13 | 72.4 |
| MS.gene013329.t1 | AT4G16600 | 25.989 | 177 | 114 | 6 | 341 | 504 | 58 | 230 | 1.96e-11 | 67.4 |
| MS.gene013329.t1 | AT2G35710 | 23.810 | 210 | 145 | 5 | 307 | 504 | 28 | 234 | 2.72e-11 | 65.9 |
| MS.gene013329.t1 | AT2G35710 | 26.136 | 176 | 115 | 5 | 341 | 504 | 62 | 234 | 9.39e-11 | 65.1 |
Find 140 sgRNAs with CRISPR-Local
Find 251 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTATGTGCTTCACTATTT+AGG | 0.175807 | 3.4:+86986557 | MS.gene013329:CDS |
| GGTAATGAAGAGCACATAAA+TGG | 0.238422 | 3.4:-86985622 | None:intergenic |
| TGAAGCCATGGTTATGCTTC+AGG | 0.255686 | 3.4:+86986582 | MS.gene013329:CDS |
| TCTTCCTCATCAATCCATTC+TGG | 0.258883 | 3.4:-86985420 | None:intergenic |
| TTGCACTAGAGCCTGTTAAA+TGG | 0.289954 | 3.4:-86984812 | None:intergenic |
| TACAATACCACCCATTTAAC+AGG | 0.292959 | 3.4:+86984801 | MS.gene013329:CDS |
| TCAGCTCATGTTTATGTTTG+TGG | 0.297365 | 3.4:+86985981 | MS.gene013329:CDS |
| TTACCGGTAGCAGTGATTTC+CGG | 0.297466 | 3.4:-86986287 | None:intergenic |
| TGCATCTTAAGTTTCTATCT+TGG | 0.305792 | 3.4:-86984701 | None:intergenic |
| CACCTGCAGCTTGCAGCTGC+TGG | 0.307481 | 3.4:+86985570 | MS.gene013329:CDS |
| CCTTCTGCTTTGACTTCAAC+AGG | 0.309519 | 3.4:-86986718 | None:intergenic |
| AATGGAATTACAGCAAATTC+AGG | 0.311462 | 3.4:+86986177 | MS.gene013329:CDS |
| TCTCTCAAAACACTCAAGTT+TGG | 0.319713 | 3.4:-86985720 | None:intergenic |
| ACGTCCAACTAGTTCTTTGC+AGG | 0.331846 | 3.4:-86985673 | None:intergenic |
| GAAAAGCATGTTGCGGCATT+GGG | 0.356116 | 3.4:+86986856 | MS.gene013329:CDS |
| TCTTTGCAGGTAAACAGATT+TGG | 0.366099 | 3.4:-86985660 | None:intergenic |
| CATTACAAAAGTGGCGGAAA+TGG | 0.368832 | 3.4:-86984757 | None:intergenic |
| CAGGTAAACAGATTTGGTAT+TGG | 0.380674 | 3.4:-86985654 | None:intergenic |
| ATCAAATGTAGATACTGATT+GGG | 0.390328 | 3.4:+86985221 | MS.gene013329:CDS |
| TATCAAATGTAGATACTGAT+TGG | 0.406559 | 3.4:+86985220 | MS.gene013329:CDS |
| TCAGGGACTATGATTGTAAC+TGG | 0.408838 | 3.4:+86986600 | MS.gene013329:CDS |
| GGAAAAGCATGTTGCGGCAT+TGG | 0.412425 | 3.4:+86986855 | MS.gene013329:CDS |
| TATGCTTTGTGCTGCAGCTA+TGG | 0.414347 | 3.4:-86986006 | None:intergenic |
| CTTGTAAGAATGGAGCTAAC+TGG | 0.418026 | 3.4:+86985526 | MS.gene013329:CDS |
| GGCATTGGGGAGAGAGTAAC+TGG | 0.422215 | 3.4:+86986870 | MS.gene013329:CDS |
| ATTGTTGCATAGGCTTCTCT+TGG | 0.422994 | 3.4:-86985951 | None:intergenic |
| GCAAAACTGTTGTAAAAGCT+TGG | 0.428800 | 3.4:-86986696 | None:intergenic |
| CCCTTGGTCCCCTCCATTGT+AGG | 0.431386 | 3.4:-86986402 | None:intergenic |
| TGGCGGAAATGGTTATCAAT+AGG | 0.431528 | 3.4:-86984746 | None:intergenic |
| TGGATATCACAGAAGCGGTT+TGG | 0.440256 | 3.4:+86986082 | MS.gene013329:CDS |
| TGCACTAGAGCCTGTTAAAT+GGG | 0.445408 | 3.4:-86984811 | None:intergenic |
| TGGGTGGTATTGTAAATCTC+TGG | 0.456085 | 3.4:-86984792 | None:intergenic |
| CTTGGTAGAGAAGGGCAAAC+AGG | 0.457373 | 3.4:-86985456 | None:intergenic |
| ACTATTTAGGTTTGAAGCCA+TGG | 0.459094 | 3.4:+86986570 | MS.gene013329:CDS |
| GAATGTGAAGAAGGTGATGT+AGG | 0.462933 | 3.4:-86982866 | None:intergenic |
| GTAATGAAGAGCACATAAAT+GGG | 0.464788 | 3.4:-86985621 | None:intergenic |
| ACAACGCTGAGATATCTAAC+TGG | 0.465253 | 3.4:+86985316 | MS.gene013329:CDS |
| TTCAAGAAGTTCATATGTCT+TGG | 0.466879 | 3.4:-86986461 | None:intergenic |
| CAAATGAAAACCATGTTGTT+TGG | 0.468309 | 3.4:+86986518 | MS.gene013329:CDS |
| GTCAAAGCAGAAGGCACAGT+TGG | 0.468496 | 3.4:+86986727 | MS.gene013329:CDS |
| GGCCAGCAGCTGCAAGCTGC+AGG | 0.469350 | 3.4:-86985572 | None:intergenic |
| CTACCAAGTCTCGGATCTCC+TGG | 0.470581 | 3.4:+86985471 | MS.gene013329:CDS |
| AGCTGAAATGTGCAGTTTGA+TGG | 0.471355 | 3.4:-86986350 | None:intergenic |
| CAAAACTGTTGTAAAAGCTT+GGG | 0.471650 | 3.4:-86986695 | None:intergenic |
| TAGTGAAGCACATAGAGAAT+TGG | 0.472510 | 3.4:-86986551 | None:intergenic |
| CAGTTAGCTCCATTCTTACA+AGG | 0.473497 | 3.4:-86985525 | None:intergenic |
| AAGAAAGAGGAATGTGAAGA+AGG | 0.480068 | 3.4:-86982875 | None:intergenic |
| GTTAAGCTACCTTGTAAGAA+TGG | 0.484639 | 3.4:+86985516 | MS.gene013329:CDS |
| TGCCCTTCTCTACCAAGTCT+CGG | 0.486023 | 3.4:+86985462 | MS.gene013329:CDS |
| CTGAATATGAGAGGAACAAT+GGG | 0.489156 | 3.4:+86983169 | MS.gene013329:CDS |
| GAAGCCATGGTTATGCTTCA+GGG | 0.489159 | 3.4:+86986583 | MS.gene013329:CDS |
| GCACAAAGCATAAGAATGTC+AGG | 0.490485 | 3.4:+86986017 | MS.gene013329:CDS |
| GATCCGAGACTTGGTAGAGA+AGG | 0.490655 | 3.4:-86985465 | None:intergenic |
| TTTACCTGCAAAGAACTAGT+TGG | 0.491571 | 3.4:+86985669 | MS.gene013329:CDS |
| GCAAGTTCACATGATCCAAC+TGG | 0.492733 | 3.4:-86985756 | None:intergenic |
| GGAAAACAATATACCGATTG+AGG | 0.497061 | 3.4:-86982946 | None:intergenic |
| TCTCATTTATATGATCCATC+AGG | 0.500815 | 3.4:-86986373 | None:intergenic |
| ATGGTAACTGTGGGAGGTGT+TGG | 0.516236 | 3.4:-86986914 | None:intergenic |
| ATATTTCATTCAAATACCCT+TGG | 0.517914 | 3.4:-86986418 | None:intergenic |
| TTCCTTTGAATGAGGTAGCA+AGG | 0.523339 | 3.4:-86985593 | None:intergenic |
| AGCACCACGTACACCTCAAT+CGG | 0.523813 | 3.4:+86982933 | MS.gene013329:CDS |
| TGTAGTTTGCTATTTCCGCT+TGG | 0.524042 | 3.4:-86986763 | None:intergenic |
| AAATATTTACATGGTGGCAC+AGG | 0.525162 | 3.4:+86986435 | MS.gene013329:CDS |
| TAAGGAACTGACATGGATGA+AGG | 0.528957 | 3.4:-86983229 | None:intergenic |
| CTGCACATTTCAGCTCCTGA+TGG | 0.529440 | 3.4:+86986358 | MS.gene013329:CDS |
| CACAGATAGAAACAAGAAAG+AGG | 0.530154 | 3.4:-86982888 | None:intergenic |
| ATTACAGCAAATTCAGGTTG+TGG | 0.530607 | 3.4:+86986183 | MS.gene013329:CDS |
| AACATACCTCTGCCTCTCAT+AGG | 0.531287 | 3.4:-86985783 | None:intergenic |
| GGGAGTCTCTATATCCAGAA+TGG | 0.532222 | 3.4:+86985406 | MS.gene013329:CDS |
| GTATAGATAATCTTTGTGAC+TGG | 0.535311 | 3.4:+86986834 | MS.gene013329:CDS |
| GCACTGGCGAATCAAAGTTA+AGG | 0.535732 | 3.4:+86986793 | MS.gene013329:CDS |
| GGGGTAATTTCCTTTGAATG+AGG | 0.536279 | 3.4:-86985601 | None:intergenic |
| TCCTACAATGGAGGGGACCA+AGG | 0.538011 | 3.4:+86986401 | MS.gene013329:CDS |
| ATGCAGATTTACTCATACTC+AGG | 0.538087 | 3.4:+86986240 | MS.gene013329:CDS |
| ATTTGAATGAAATATTTACA+TGG | 0.539540 | 3.4:+86986426 | MS.gene013329:CDS |
| GAAATAGCAAACTACACAGA+TGG | 0.541544 | 3.4:+86986770 | MS.gene013329:CDS |
| ATTTGGTATTGGAAAACAGT+TGG | 0.541578 | 3.4:-86985643 | None:intergenic |
| ATGCCGGAAATCACTGCTAC+CGG | 0.545589 | 3.4:+86986284 | MS.gene013329:CDS |
| TGAAGCACATAGAGAATTGG+TGG | 0.546520 | 3.4:-86986548 | None:intergenic |
| TTGGACGTGAAGGAAATGTA+TGG | 0.546585 | 3.4:+86985688 | MS.gene013329:CDS |
| AGAAGCGGTTTGGAAGCAGC+AGG | 0.547255 | 3.4:+86986092 | MS.gene013329:CDS |
| AGCAGAAGGCACAGTTGGAG+TGG | 0.548612 | 3.4:+86986732 | MS.gene013329:CDS |
| TTTGGAAGCAGCAGGGTGGA+AGG | 0.549025 | 3.4:+86986100 | MS.gene013329:CDS |
| TGAAGATTTATACAAGAGAA+AGG | 0.550106 | 3.4:+86984629 | MS.gene013329:CDS |
| TATGGGGTGGCTCAGATCCT+CGG | 0.552847 | 3.4:+86985193 | MS.gene013329:CDS |
| TCTCATCAACAAGTATTACT+AGG | 0.558372 | 3.4:-86986052 | None:intergenic |
| GTACCAGGAGATCCGAGACT+TGG | 0.558725 | 3.4:-86985474 | None:intergenic |
| AGATTGAGTCCTACAATGGA+GGG | 0.566288 | 3.4:+86986393 | MS.gene013329:CDS |
| CCTGTTGAAGTCAAAGCAGA+AGG | 0.570557 | 3.4:+86986718 | MS.gene013329:CDS |
| GCTGAATATGAGAGGAACAA+TGG | 0.571145 | 3.4:+86983168 | MS.gene013329:intron |
| GTAGAGGAACATTACAAAAG+TGG | 0.573234 | 3.4:-86984766 | None:intergenic |
| GGCCTTGCTACCTCATTCAA+AGG | 0.584805 | 3.4:+86985591 | MS.gene013329:CDS |
| ATCCGAGACTTGGTAGAGAA+GGG | 0.585852 | 3.4:-86985464 | None:intergenic |
| TCTTGGATAGATAAGTTGAA+AGG | 0.588178 | 3.4:-86984684 | None:intergenic |
| GCAGAAGGCACAGTTGGAGT+GGG | 0.589609 | 3.4:+86986733 | MS.gene013329:CDS |
| AACGCAGAACTGGTTTACAA+TGG | 0.591344 | 3.4:+86985921 | MS.gene013329:intron |
| GCACTTCCTATGAGAGGCAG+AGG | 0.595671 | 3.4:+86985777 | MS.gene013329:CDS |
| CAAACTACACAGATGGGCAC+TGG | 0.597035 | 3.4:+86986777 | MS.gene013329:CDS |
| AAAGAACTAGTTGGACGTGA+AGG | 0.598037 | 3.4:+86985678 | MS.gene013329:CDS |
| GAGATTGAGTCCTACAATGG+AGG | 0.602635 | 3.4:+86986392 | MS.gene013329:CDS |
| ATTTAACAGGCTCTAGTGCA+AGG | 0.604649 | 3.4:+86984814 | MS.gene013329:CDS |
| AAATAGCAAACTACACAGAT+GGG | 0.605901 | 3.4:+86986771 | MS.gene013329:CDS |
| TGAATGCAGAATTGTTGCAT+AGG | 0.609143 | 3.4:-86985961 | None:intergenic |
| AATGAGATTGAGTCCTACAA+TGG | 0.611979 | 3.4:+86986389 | MS.gene013329:CDS |
| GTGAACAGGTGGATATGGGG+TGG | 0.612033 | 3.4:+86985180 | MS.gene013329:intron |
| AAGAGATGACATGGTAACTG+TGG | 0.612180 | 3.4:-86986924 | None:intergenic |
| TGCTGCAAACAGTGTGACAT+GGG | 0.614941 | 3.4:+86985386 | MS.gene013329:CDS |
| TAAAGCAGAAAGAGATGACA+TGG | 0.615606 | 3.4:-86986933 | None:intergenic |
| ATGAGATTGAGTCTTGTACC+AGG | 0.621202 | 3.4:-86985489 | None:intergenic |
| AGAGATGACATGGTAACTGT+GGG | 0.623896 | 3.4:-86986923 | None:intergenic |
| TGGCTCAGCACCAAACAACA+TGG | 0.624342 | 3.4:-86986528 | None:intergenic |
| ATGCTGCAAACAGTGTGACA+TGG | 0.624925 | 3.4:+86985385 | MS.gene013329:CDS |
| ATATCCAGAATGGATTGATG+AGG | 0.627762 | 3.4:+86985416 | MS.gene013329:CDS |
| AAAAGCATGTTGCGGCATTG+GGG | 0.631670 | 3.4:+86986857 | MS.gene013329:CDS |
| ATCAGTGGATATCACAGAAG+CGG | 0.632224 | 3.4:+86986077 | MS.gene013329:CDS |
| CTTGTTGATGAGACAATCAG+TGG | 0.634716 | 3.4:+86986062 | MS.gene013329:CDS |
| TTTGTGAACAGGTGGATATG+GGG | 0.635856 | 3.4:+86985177 | MS.gene013329:intron |
| TGTAAATCTCTGGAGAGTAG+AGG | 0.638062 | 3.4:-86984782 | None:intergenic |
| TGAATGAAATATTTACATGG+TGG | 0.649910 | 3.4:+86986429 | MS.gene013329:CDS |
| CCTACAATGGAGGGGACCAA+GGG | 0.651743 | 3.4:+86986402 | MS.gene013329:CDS |
| GCTCTGTAGCTGAATATGAG+AGG | 0.662782 | 3.4:+86983160 | MS.gene013329:intron |
| GAGGAACATTACAAAAGTGG+CGG | 0.663674 | 3.4:-86984763 | None:intergenic |
| TCAAATGTAGATACTGATTG+GGG | 0.666900 | 3.4:+86985222 | MS.gene013329:CDS |
| ATGTAGCACATGCAAAGTGG+TGG | 0.666975 | 3.4:+86986654 | MS.gene013329:CDS |
| AGCACATGCAAAGTGGTGGA+AGG | 0.669357 | 3.4:+86986658 | MS.gene013329:CDS |
| GATTGAGTCCTACAATGGAG+GGG | 0.670790 | 3.4:+86986394 | MS.gene013329:CDS |
| GAAGCGGTTTGGAAGCAGCA+GGG | 0.673301 | 3.4:+86986093 | MS.gene013329:CDS |
| GCGGTTTGGAAGCAGCAGGG+TGG | 0.677572 | 3.4:+86986096 | MS.gene013329:CDS |
| GTGACTGGAAAAGCATGTTG+CGG | 0.678093 | 3.4:+86986849 | MS.gene013329:CDS |
| ACTAGAGCCTGTTAAATGGG+TGG | 0.681890 | 3.4:-86984808 | None:intergenic |
| TATACCGATTGAGGTGTACG+TGG | 0.689087 | 3.4:-86982937 | None:intergenic |
| TAATGAAGAGCACATAAATG+GGG | 0.692136 | 3.4:-86985620 | None:intergenic |
| GAACTTGCACTTCCTATGAG+AGG | 0.692338 | 3.4:+86985771 | MS.gene013329:CDS |
| TAGATGTAGAGCAACATGTG+TGG | 0.702518 | 3.4:-86985358 | None:intergenic |
| TAGTCCCTGAAGCATAACCA+TGG | 0.705595 | 3.4:-86986587 | None:intergenic |
| TCTACATTTGATATGTACCG+AGG | 0.712296 | 3.4:-86985210 | None:intergenic |
| AGTCTAGCTTCAACAGAACG+AGG | 0.720197 | 3.4:-86983199 | None:intergenic |
| GATGACATGGTAACTGTGGG+AGG | 0.721623 | 3.4:-86986920 | None:intergenic |
| GTGATGTAGCACATGCAAAG+TGG | 0.727257 | 3.4:+86986651 | MS.gene013329:CDS |
| GGAGTGGGATCGAAGCCAAG+CGG | 0.729172 | 3.4:+86986748 | MS.gene013329:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAAATTTTCATATATAAC+GGG | + | chr3.4:86985041-86985060 | MS.gene013329:intron | 10.0% |
| !! | AAAAAAAAAATCATGAAACT+TGG | + | chr3.4:86984907-86984926 | MS.gene013329:intron | 15.0% |
| !! | AAAAAAAAATCATGAAACTT+GGG | + | chr3.4:86984908-86984927 | MS.gene013329:intron | 15.0% |
| !! | AAAGAAAAAAATGAATTTCA+AGG | + | chr3.4:86985273-86985292 | MS.gene013329:CDS | 15.0% |
| !! | ATCAGTATTCAATATTAAAA+AGG | + | chr3.4:86983815-86983834 | MS.gene013329:intron | 15.0% |
| !! | ATTTGAATGAAATATTTACA+TGG | + | chr3.4:86986426-86986445 | MS.gene013329:CDS | 15.0% |
| !! | TATTGAAAACTAAATTAAAC+TGG | - | chr3.4:86983048-86983067 | None:intergenic | 15.0% |
| !! | TCATAATTAAAAGAAAGAAA+AGG | - | chr3.4:86983281-86983300 | None:intergenic | 15.0% |
| !!! | GTTTTGTAAATTAATATAGT+TGG | - | chr3.4:86984319-86984338 | None:intergenic | 15.0% |
| !!! | TAAATTATTTGTTATGAACA+AGG | - | chr3.4:86983883-86983902 | None:intergenic | 15.0% |
| !!! | TTTAAGTTTTTATATATGGA+TGG | - | chr3.4:86983713-86983732 | None:intergenic | 15.0% |
| !!! | TTTTTTACAAAACTCATTAT+TGG | - | chr3.4:86983766-86983785 | None:intergenic | 15.0% |
| !! | AAAAAAATTCACCAAACAAT+TGG | - | chr3.4:86984558-86984577 | None:intergenic | 20.0% |
| !! | AAATAAACACATATAATCAG+TGG | + | chr3.4:86984222-86984241 | MS.gene013329:intron | 20.0% |
| !! | AACTATGAAGAAGAAAATTA+AGG | - | chr3.4:86983250-86983269 | None:intergenic | 20.0% |
| !! | ATGATAATCATCATAAAATC+AGG | + | chr3.4:86983297-86983316 | MS.gene013329:intron | 20.0% |
| !! | ATTTAATGAGAAAAACATGA+TGG | - | chr3.4:86985868-86985887 | None:intergenic | 20.0% |
| !! | TAAAAAATGTATCTGGTAAA+AGG | + | chr3.4:86983779-86983798 | MS.gene013329:intron | 20.0% |
| !! | TAATCTCGATATTAATTCAT+AGG | - | chr3.4:86985024-86985043 | None:intergenic | 20.0% |
| !! | TACAATTACAATGTAATTAC+TGG | + | chr3.4:86983575-86983594 | MS.gene013329:intron | 20.0% |
| !! | TCCTAAAAATAAATGACTAT+TGG | - | chr3.4:86983371-86983390 | None:intergenic | 20.0% |
| !!! | AGTTTTGTAAAAAATGTATC+TGG | + | chr3.4:86983772-86983791 | MS.gene013329:intron | 20.0% |
| !!! | TCCAATAGTCATTTATTTTT+AGG | + | chr3.4:86983367-86983386 | MS.gene013329:intron | 20.0% |
| ! | AAAAAGATGCTTACAATGAA+TGG | + | chr3.4:86986159-86986178 | MS.gene013329:CDS | 25.0% |
| ! | AAAAATGAATTTCAAGGCAT+TGG | + | chr3.4:86985279-86985298 | MS.gene013329:CDS | 25.0% |
| ! | AAGTCAAGTTTCATAAATGA+TGG | + | chr3.4:86983431-86983450 | MS.gene013329:intron | 25.0% |
| ! | AATCCTGATTCAATTCAAAT+AGG | + | chr3.4:86984977-86984996 | MS.gene013329:intron | 25.0% |
| ! | AATGTGTTTCATTAATAACG+AGG | + | chr3.4:86984601-86984620 | MS.gene013329:intron | 25.0% |
| ! | ACACAACACAATATGTATAA+TGG | - | chr3.4:86982970-86982989 | None:intergenic | 25.0% |
| ! | AGGAAAGAAACAAAATGAAA+TGG | - | chr3.4:86983081-86983100 | None:intergenic | 25.0% |
| ! | ATATTTCATTCAAATACCCT+TGG | - | chr3.4:86986421-86986440 | None:intergenic | 25.0% |
| ! | ATCATGAAACTTATGAAACT+GGG | + | chr3.4:86984870-86984889 | MS.gene013329:intron | 25.0% |
| ! | ATCCTGATTCAATTCAAATA+GGG | + | chr3.4:86984978-86984997 | MS.gene013329:intron | 25.0% |
| ! | TATCAAATGTAGATACTGAT+TGG | + | chr3.4:86985220-86985239 | MS.gene013329:CDS | 25.0% |
| ! | TGAAGATTTATACAAGAGAA+AGG | + | chr3.4:86984629-86984648 | MS.gene013329:CDS | 25.0% |
| ! | TGAATGAAATATTTACATGG+TGG | + | chr3.4:86986429-86986448 | MS.gene013329:CDS | 25.0% |
| ! | TGTATACTTCAAATCCTATT+AGG | - | chr3.4:86983993-86984012 | None:intergenic | 25.0% |
| ! | TTAGGACTAAAATTATCACA+AGG | + | chr3.4:86983385-86983404 | MS.gene013329:intron | 25.0% |
| ! | TTATGTCCTTACATAAATGT+TGG | - | chr3.4:86984475-86984494 | None:intergenic | 25.0% |
| !! | AGGAACATAGATTTTCTATT+TGG | + | chr3.4:86986260-86986279 | MS.gene013329:CDS | 25.0% |
| !! | ATACTTGAAGATGATTTTCT+AGG | + | chr3.4:86983018-86983037 | MS.gene013329:intron | 25.0% |
| !! | ATCAAATGTAGATACTGATT+GGG | + | chr3.4:86985221-86985240 | MS.gene013329:CDS | 25.0% |
| !! | GGAACATAGATTTTCTATTT+GGG | + | chr3.4:86986261-86986280 | MS.gene013329:CDS | 25.0% |
| !! | TACTTGAAGATGATTTTCTA+GGG | + | chr3.4:86983019-86983038 | MS.gene013329:intron | 25.0% |
| !! | TATTTCTTGTTTACATTCGA+AGG | + | chr3.4:86984136-86984155 | MS.gene013329:intron | 25.0% |
| !!! | TTTTTTCGATTTCTAAATCC+AGG | - | chr3.4:86984952-86984971 | None:intergenic | 25.0% |
| AAATAGCAAACTACACAGAT+GGG | + | chr3.4:86986771-86986790 | MS.gene013329:CDS | 30.0% | |
| AATGGAATTACAGCAAATTC+AGG | + | chr3.4:86986177-86986196 | MS.gene013329:CDS | 30.0% | |
| AGAAAATTAAGGAACTGACA+TGG | - | chr3.4:86983239-86983258 | None:intergenic | 30.0% | |
| AGTTTAATAAATGCAGCGAT+AGG | - | chr3.4:86983101-86983120 | None:intergenic | 30.0% | |
| ATATGATACGGATCACAATT+GGG | - | chr3.4:86984070-86984089 | None:intergenic | 30.0% | |
| ATCGCTGCATTTATTAAACT+TGG | + | chr3.4:86983101-86983120 | MS.gene013329:intron | 30.0% | |
| CAAAACTGTTGTAAAAGCTT+GGG | - | chr3.4:86986698-86986717 | None:intergenic | 30.0% | |
| CAAACTCCAACATTTATGTA+AGG | + | chr3.4:86984466-86984485 | MS.gene013329:intron | 30.0% | |
| CAAATGAAAACCATGTTGTT+TGG | + | chr3.4:86986518-86986537 | MS.gene013329:CDS | 30.0% | |
| CATCATGAAACTTATGAAAC+TGG | + | chr3.4:86984869-86984888 | MS.gene013329:intron | 30.0% | |
| GAGAACAAGTACTAAAATAG+TGG | - | chr3.4:86985117-86985136 | None:intergenic | 30.0% | |
| GTATGTGTTAGATAGCTATA+AGG | - | chr3.4:86983913-86983932 | None:intergenic | 30.0% | |
| TAAGAACGTTTAATACGTTG+AGG | - | chr3.4:86983557-86983576 | None:intergenic | 30.0% | |
| TATATGATACGGATCACAAT+TGG | - | chr3.4:86984071-86984090 | None:intergenic | 30.0% | |
| TATCTGCAAATCCAATTGTT+TGG | + | chr3.4:86984544-86984563 | MS.gene013329:intron | 30.0% | |
| TCATGAAACTTATGAAACTG+GGG | + | chr3.4:86984871-86984890 | MS.gene013329:intron | 30.0% | |
| TCATTTAGAAAAGACAGGAA+GGG | - | chr3.4:86984094-86984113 | None:intergenic | 30.0% | |
| TCCTGATTCAATTCAAATAG+GGG | + | chr3.4:86984979-86984998 | MS.gene013329:intron | 30.0% | |
| TCTCATCAACAAGTATTACT+AGG | - | chr3.4:86986055-86986074 | None:intergenic | 30.0% | |
| TCTCATTTATATGATCCATC+AGG | - | chr3.4:86986376-86986395 | None:intergenic | 30.0% | |
| TGCATCTTAAGTTTCTATCT+TGG | - | chr3.4:86984704-86984723 | None:intergenic | 30.0% | |
| TTCAAGAAGTTCATATGTCT+TGG | - | chr3.4:86986464-86986483 | None:intergenic | 30.0% | |
| ! | AATCATTTTCAAACCACATG+AGG | + | chr3.4:86984029-86984048 | MS.gene013329:intron | 30.0% |
| ! | ACGTATATTTTGCATGATGT+TGG | + | chr3.4:86984422-86984441 | MS.gene013329:intron | 30.0% |
| ! | ACTTGAAGATGATTTTCTAG+GGG | + | chr3.4:86983020-86983039 | MS.gene013329:intron | 30.0% |
| ! | ATCATTTTCAAACCACATGA+GGG | + | chr3.4:86984030-86984049 | MS.gene013329:intron | 30.0% |
| ! | ATTTGGTATTGGAAAACAGT+TGG | - | chr3.4:86985646-86985665 | None:intergenic | 30.0% |
| ! | GCATTTAGACTCTTTAGAAA+AGG | - | chr3.4:86983489-86983508 | None:intergenic | 30.0% |
| ! | GTAATGAAGAGCACATAAAT+GGG | - | chr3.4:86985624-86985643 | None:intergenic | 30.0% |
| ! | TAATGAAGAGCACATAAATG+GGG | - | chr3.4:86985623-86985642 | None:intergenic | 30.0% |
| ! | TCAAATGTAGATACTGATTG+GGG | + | chr3.4:86985222-86985241 | MS.gene013329:CDS | 30.0% |
| ! | TCTTGGATAGATAAGTTGAA+AGG | - | chr3.4:86984687-86984706 | None:intergenic | 30.0% |
| ! | TTTTCTTGTCGCAAAATTGA+TGG | + | chr3.4:86985888-86985907 | MS.gene013329:intron | 30.0% |
| !! | GAACTTCTTGAAGCATTTTT+GGG | + | chr3.4:86986472-86986491 | MS.gene013329:CDS | 30.0% |
| !! | TGAACTTCTTGAAGCATTTT+TGG | + | chr3.4:86986471-86986490 | MS.gene013329:CDS | 30.0% |
| !!! | TAAGCATCTTTTTCAGCTTT+GGG | - | chr3.4:86986152-86986171 | None:intergenic | 30.0% |
| AAATATTTACATGGTGGCAC+AGG | + | chr3.4:86986435-86986454 | MS.gene013329:CDS | 35.0% | |
| AAGAAAGAGGAATGTGAAGA+AGG | - | chr3.4:86982878-86982897 | None:intergenic | 35.0% | |
| AAGACAAGTGACATGCATTT+AGG | + | chr3.4:86984507-86984526 | MS.gene013329:intron | 35.0% | |
| AATCATGAAACTTGGGAAAC+TGG | + | chr3.4:86984915-86984934 | MS.gene013329:intron | 35.0% | |
| AATGAATTCAAACGCAGAAC+TGG | + | chr3.4:86985911-86985930 | MS.gene013329:intron | 35.0% | |
| AATGAGATTGAGTCCTACAA+TGG | + | chr3.4:86986389-86986408 | MS.gene013329:CDS | 35.0% | |
| ACTTGTTCTCTTCTTAGCAT+AGG | + | chr3.4:86985127-86985146 | MS.gene013329:intron | 35.0% | |
| AGTAGATGAGCAGCATTATT+AGG | + | chr3.4:86984291-86984310 | MS.gene013329:intron | 35.0% | |
| ATCATGAAACTTGGGAAACT+GGG | + | chr3.4:86984916-86984935 | MS.gene013329:intron | 35.0% | |
| ATGCAGATTTACTCATACTC+AGG | + | chr3.4:86986240-86986259 | MS.gene013329:CDS | 35.0% | |
| CACAGATAGAAACAAGAAAG+AGG | - | chr3.4:86982891-86982910 | None:intergenic | 35.0% | |
| CATGAAACTTATGAAACTGG+GGG | + | chr3.4:86984872-86984891 | MS.gene013329:intron | 35.0% | |
| CCTGATTCAATTCAAATAGG+GGG | + | chr3.4:86984980-86984999 | MS.gene013329:intron | 35.0% | |
| CTCTATGTGCTTCACTATTT+AGG | + | chr3.4:86986557-86986576 | MS.gene013329:CDS | 35.0% | |
| CTGAATATGAGAGGAACAAT+GGG | + | chr3.4:86983169-86983188 | MS.gene013329:CDS | 35.0% | |
| CTTGTTCTCTTCTTAGCATA+GGG | + | chr3.4:86985128-86985147 | MS.gene013329:intron | 35.0% | |
| GAAATAGCAAACTACACAGA+TGG | + | chr3.4:86986770-86986789 | MS.gene013329:CDS | 35.0% | |
| GCAAAACTGTTGTAAAAGCT+TGG | - | chr3.4:86986699-86986718 | None:intergenic | 35.0% | |
| GTAGAGGAACATTACAAAAG+TGG | - | chr3.4:86984769-86984788 | None:intergenic | 35.0% | |
| GTAGATGAGCAGCATTATTA+GGG | + | chr3.4:86984292-86984311 | MS.gene013329:intron | 35.0% | |
| GTCATTTAGAAAAGACAGGA+AGG | - | chr3.4:86984095-86984114 | None:intergenic | 35.0% | |
| GTTAAGCTACCTTGTAAGAA+TGG | + | chr3.4:86985516-86985535 | MS.gene013329:CDS | 35.0% | |
| TAAAGCAGAAAGAGATGACA+TGG | - | chr3.4:86986936-86986955 | None:intergenic | 35.0% | |
| TACAATACCACCCATTTAAC+AGG | + | chr3.4:86984801-86984820 | MS.gene013329:CDS | 35.0% | |
| TAGTGAAGCACATAGAGAAT+TGG | - | chr3.4:86986554-86986573 | None:intergenic | 35.0% | |
| TCAGCTCATGTTTATGTTTG+TGG | + | chr3.4:86985981-86986000 | MS.gene013329:CDS | 35.0% | |
| TCTACATTTGATATGTACCG+AGG | - | chr3.4:86985213-86985232 | None:intergenic | 35.0% | |
| TCTCTCAAAACACTCAAGTT+TGG | - | chr3.4:86985723-86985742 | None:intergenic | 35.0% | |
| TCTTTGCAGGTAAACAGATT+TGG | - | chr3.4:86985663-86985682 | None:intergenic | 35.0% | |
| TGAATGCAGAATTGTTGCAT+AGG | - | chr3.4:86985964-86985983 | None:intergenic | 35.0% | |
| TTGTTCTCTTCTTAGCATAG+GGG | + | chr3.4:86985129-86985148 | MS.gene013329:intron | 35.0% | |
| TTTACCTGCAAAGAACTAGT+TGG | + | chr3.4:86985669-86985688 | MS.gene013329:CDS | 35.0% | |
| ! | ACTATTTAGGTTTGAAGCCA+TGG | + | chr3.4:86986570-86986589 | MS.gene013329:CDS | 35.0% |
| ! | ATCTGTGCAATTTTGTGAAC+AGG | + | chr3.4:86985166-86985185 | MS.gene013329:intron | 35.0% |
| ! | ATTTTGTGAACAGGTGGATA+TGG | + | chr3.4:86985175-86985194 | MS.gene013329:intron | 35.0% |
| ! | CAGGTAAACAGATTTGGTAT+TGG | - | chr3.4:86985657-86985676 | None:intergenic | 35.0% |
| ! | CGTTGTCATTTAGAAAAGAC+AGG | - | chr3.4:86984099-86984118 | None:intergenic | 35.0% |
| ! | GGAAAACAATATACCGATTG+AGG | - | chr3.4:86982949-86982968 | None:intergenic | 35.0% |
| ! | GGTAATGAAGAGCACATAAA+TGG | - | chr3.4:86985625-86985644 | None:intergenic | 35.0% |
| ! | TCATTTTCAAACCACATGAG+GGG | + | chr3.4:86984031-86984050 | MS.gene013329:intron | 35.0% |
| ! | TTTTGTGAACAGGTGGATAT+GGG | + | chr3.4:86985176-86985195 | MS.gene013329:intron | 35.0% |
| !! | AGATTTTCTATTTGGGATGC+CGG | + | chr3.4:86986268-86986287 | MS.gene013329:CDS | 35.0% |
| !! | ATATCCAGAATGGATTGATG+AGG | + | chr3.4:86985416-86985435 | MS.gene013329:CDS | 35.0% |
| !! | ATTACAGCAAATTCAGGTTG+TGG | + | chr3.4:86986183-86986202 | MS.gene013329:CDS | 35.0% |
| !! | TCTTTTTAACTCTGGTGTCA+TGG | + | chr3.4:86986319-86986338 | MS.gene013329:CDS | 35.0% |
| !!! | AAGCATCTTTTTCAGCTTTG+GGG | - | chr3.4:86986151-86986170 | None:intergenic | 35.0% |
| !!! | GTAAGCATCTTTTTCAGCTT+TGG | - | chr3.4:86986153-86986172 | None:intergenic | 35.0% |
| !!! | TTCTTGAAGCATTTTTGGGT+TGG | + | chr3.4:86986476-86986495 | MS.gene013329:CDS | 35.0% |
| AAAAAGAGTGGCATCGTTAC+CGG | - | chr3.4:86986306-86986325 | None:intergenic | 40.0% | |
| AAAGAACTAGTTGGACGTGA+AGG | + | chr3.4:86985678-86985697 | MS.gene013329:CDS | 40.0% | |
| AAATGCGAAACTCACACACA+CGG | + | chr3.4:86983503-86983522 | MS.gene013329:intron | 40.0% | |
| AAGAGATGACATGGTAACTG+TGG | - | chr3.4:86986927-86986946 | None:intergenic | 40.0% | |
| AAGTTTGGGAATGTGAGAGA+TGG | - | chr3.4:86985820-86985839 | None:intergenic | 40.0% | |
| AATACACGCATGCACCTAAT+AGG | + | chr3.4:86983976-86983995 | MS.gene013329:intron | 40.0% | |
| ACAACGCTGAGATATCTAAC+TGG | + | chr3.4:86985316-86985335 | MS.gene013329:CDS | 40.0% | |
| AGAGATGACATGGTAACTGT+GGG | - | chr3.4:86986926-86986945 | None:intergenic | 40.0% | |
| AGATTGAGTCCTACAATGGA+GGG | + | chr3.4:86986393-86986412 | MS.gene013329:CDS | 40.0% | |
| AGCTGAAATGTGCAGTTTGA+TGG | - | chr3.4:86986353-86986372 | None:intergenic | 40.0% | |
| AGGAAGCTTAGCAAGATACT+AGG | + | chr3.4:86984156-86984175 | MS.gene013329:intron | 40.0% | |
| ATCAGTGGATATCACAGAAG+CGG | + | chr3.4:86986077-86986096 | MS.gene013329:CDS | 40.0% | |
| ATGCAAACGAGTGCAAGTTT+GGG | - | chr3.4:86985834-86985853 | None:intergenic | 40.0% | |
| ATTGTTGCATAGGCTTCTCT+TGG | - | chr3.4:86985954-86985973 | None:intergenic | 40.0% | |
| CAGTTAGCTCCATTCTTACA+AGG | - | chr3.4:86985528-86985547 | None:intergenic | 40.0% | |
| CCCCCTATTTGAATTGAATC+AGG | - | chr3.4:86984983-86985002 | None:intergenic | 40.0% | |
| CTCATCTACTTGACTAACTG+TGG | - | chr3.4:86984281-86984300 | None:intergenic | 40.0% | |
| CTTGTAAGAATGGAGCTAAC+TGG | + | chr3.4:86985526-86985545 | MS.gene013329:CDS | 40.0% | |
| GAAAAAGTTCAGCTTCCAGT+TGG | + | chr3.4:86985741-86985760 | MS.gene013329:CDS | 40.0% | |
| GAATGTGAAGAAGGTGATGT+AGG | - | chr3.4:86982869-86982888 | None:intergenic | 40.0% | |
| GACACCAGAGTTAAAAAGAG+TGG | - | chr3.4:86986318-86986337 | None:intergenic | 40.0% | |
| GAGGAACATTACAAAAGTGG+CGG | - | chr3.4:86984766-86984785 | None:intergenic | 40.0% | |
| GCACAAAGCATAAGAATGTC+AGG | + | chr3.4:86986017-86986036 | MS.gene013329:CDS | 40.0% | |
| GCTGAATATGAGAGGAACAA+TGG | + | chr3.4:86983168-86983187 | MS.gene013329:intron | 40.0% | |
| GGGGTAATTTCCTTTGAATG+AGG | - | chr3.4:86985604-86985623 | None:intergenic | 40.0% | |
| TAAGGAACTGACATGGATGA+AGG | - | chr3.4:86983232-86983251 | None:intergenic | 40.0% | |
| TAGATGTAGAGCAACATGTG+TGG | - | chr3.4:86985361-86985380 | None:intergenic | 40.0% | |
| TCAGGGACTATGATTGTAAC+TGG | + | chr3.4:86986600-86986619 | MS.gene013329:CDS | 40.0% | |
| TCATGAAACTTGGGAAACTG+GGG | + | chr3.4:86984917-86984936 | MS.gene013329:intron | 40.0% | |
| TCTAGTGCAAGGTATGTTTC+TGG | + | chr3.4:86984825-86984844 | MS.gene013329:intron | 40.0% | |
| TCTTCCTCATCAATCCATTC+TGG | - | chr3.4:86985423-86985442 | None:intergenic | 40.0% | |
| TGAAGCACATAGAGAATTGG+TGG | - | chr3.4:86986551-86986570 | None:intergenic | 40.0% | |
| TGCACTAGAGCCTGTTAAAT+GGG | - | chr3.4:86984814-86984833 | None:intergenic | 40.0% | |
| TGGCGGAAATGGTTATCAAT+AGG | - | chr3.4:86984749-86984768 | None:intergenic | 40.0% | |
| TGGGTGGTATTGTAAATCTC+TGG | - | chr3.4:86984795-86984814 | None:intergenic | 40.0% | |
| TTCCTTTGAATGAGGTAGCA+AGG | - | chr3.4:86985596-86985615 | None:intergenic | 40.0% | |
| TTGCACTAGAGCCTGTTAAA+TGG | - | chr3.4:86984815-86984834 | None:intergenic | 40.0% | |
| TTGGACGTGAAGGAAATGTA+TGG | + | chr3.4:86985688-86985707 | MS.gene013329:CDS | 40.0% | |
| TTTGCATGATGTTGGAGTTC+AGG | + | chr3.4:86984430-86984449 | MS.gene013329:intron | 40.0% | |
| TTTGTGAACAGGTGGATATG+GGG | + | chr3.4:86985177-86985196 | MS.gene013329:intron | 40.0% | |
| ! | AACGCAGAACTGGTTTACAA+TGG | + | chr3.4:86985921-86985940 | MS.gene013329:intron | 40.0% |
| ! | ATGAGATTGAGTCTTGTACC+AGG | - | chr3.4:86985492-86985511 | None:intergenic | 40.0% |
| ! | ATTTAACAGGCTCTAGTGCA+AGG | + | chr3.4:86984814-86984833 | MS.gene013329:CDS | 40.0% |
| ! | CATTACAAAAGTGGCGGAAA+TGG | - | chr3.4:86984760-86984779 | None:intergenic | 40.0% |
| ! | CTTGTTGATGAGACAATCAG+TGG | + | chr3.4:86986062-86986081 | MS.gene013329:CDS | 40.0% |
| ! | GACAGGAAGGGTATATGATA+CGG | - | chr3.4:86984082-86984101 | None:intergenic | 40.0% |
| ! | GCAAATTTTGTTGCGCATGT+TGG | + | chr3.4:86982910-86982929 | MS.gene013329:CDS | 40.0% |
| ! | TGCAGAGATTTTGCATTGCA+TGG | + | chr3.4:86983138-86983157 | MS.gene013329:intron | 40.0% |
| ! | TGTAAATCTCTGGAGAGTAG+AGG | - | chr3.4:86984785-86984804 | None:intergenic | 40.0% |
| ! | TGTGCAATTTTGTGAACAGG+TGG | + | chr3.4:86985169-86985188 | MS.gene013329:intron | 40.0% |
| !! | GATGCCACTCTTTTTAACTC+TGG | + | chr3.4:86986311-86986330 | MS.gene013329:CDS | 40.0% |
| !! | TGTAGTTTGCTATTTCCGCT+TGG | - | chr3.4:86986766-86986785 | None:intergenic | 40.0% |
| !!! | TTTTAACTCTGGTGTCATGG+TGG | + | chr3.4:86986322-86986341 | MS.gene013329:CDS | 40.0% |
| AACATACCTCTGCCTCTCAT+AGG | - | chr3.4:86985786-86985805 | None:intergenic | 45.0% | |
| ACTAGAGCCTGTTAAATGGG+TGG | - | chr3.4:86984811-86984830 | None:intergenic | 45.0% | |
| ATGCTGCAAACAGTGTGACA+TGG | + | chr3.4:86985385-86985404 | MS.gene013329:CDS | 45.0% | |
| ATGTAGCACATGCAAAGTGG+TGG | + | chr3.4:86986654-86986673 | MS.gene013329:CDS | 45.0% | |
| CATGAAACTTGGGAAACTGG+GGG | + | chr3.4:86984918-86984937 | MS.gene013329:intron | 45.0% | |
| CATGCAAACGAGTGCAAGTT+TGG | - | chr3.4:86985835-86985854 | None:intergenic | 45.0% | |
| CCTGTTGAAGTCAAAGCAGA+AGG | + | chr3.4:86986718-86986737 | MS.gene013329:CDS | 45.0% | |
| GAACTTGCACTTCCTATGAG+AGG | + | chr3.4:86985771-86985790 | MS.gene013329:CDS | 45.0% | |
| GAAGCCATGGTTATGCTTCA+GGG | + | chr3.4:86986583-86986602 | MS.gene013329:CDS | 45.0% | |
| GAGATTGAGTCCTACAATGG+AGG | + | chr3.4:86986392-86986411 | MS.gene013329:CDS | 45.0% | |
| GATTGAGTCCTACAATGGAG+GGG | + | chr3.4:86986394-86986413 | MS.gene013329:CDS | 45.0% | |
| GCAAGTTCACATGATCCAAC+TGG | - | chr3.4:86985759-86985778 | None:intergenic | 45.0% | |
| GCTCTGTAGCTGAATATGAG+AGG | + | chr3.4:86983160-86983179 | MS.gene013329:intron | 45.0% | |
| GGGAGTCTCTATATCCAGAA+TGG | + | chr3.4:86985406-86985425 | MS.gene013329:CDS | 45.0% | |
| GTGATGTAGCACATGCAAAG+TGG | + | chr3.4:86986651-86986670 | MS.gene013329:CDS | 45.0% | |
| TAGTCCCTGAAGCATAACCA+TGG | - | chr3.4:86986590-86986609 | None:intergenic | 45.0% | |
| TATGCTTTGTGCTGCAGCTA+TGG | - | chr3.4:86986009-86986028 | None:intergenic | 45.0% | |
| TCACAATTGGGACTGTATGC+AGG | - | chr3.4:86984058-86984077 | None:intergenic | 45.0% | |
| TGAAGCCATGGTTATGCTTC+AGG | + | chr3.4:86986582-86986601 | MS.gene013329:CDS | 45.0% | |
| TGCTGCAAACAGTGTGACAT+GGG | + | chr3.4:86985386-86985405 | MS.gene013329:CDS | 45.0% | |
| TGGATATCACAGAAGCGGTT+TGG | + | chr3.4:86986082-86986101 | MS.gene013329:CDS | 45.0% | |
| TTACCGGTAGCAGTGATTTC+CGG | - | chr3.4:86986290-86986309 | None:intergenic | 45.0% | |
| ! | AAAAGCATGTTGCGGCATTG+GGG | + | chr3.4:86986857-86986876 | MS.gene013329:CDS | 45.0% |
| ! | ACGTCCAACTAGTTCTTTGC+AGG | - | chr3.4:86985676-86985695 | None:intergenic | 45.0% |
| ! | AGTCTAGCTTCAACAGAACG+AGG | - | chr3.4:86983202-86983221 | None:intergenic | 45.0% |
| ! | ATCCGAGACTTGGTAGAGAA+GGG | - | chr3.4:86985467-86985486 | None:intergenic | 45.0% |
| ! | CCTTCTGCTTTGACTTCAAC+AGG | - | chr3.4:86986721-86986740 | None:intergenic | 45.0% |
| ! | GAAAAGCATGTTGCGGCATT+GGG | + | chr3.4:86986856-86986875 | MS.gene013329:CDS | 45.0% |
| ! | GCACTGGCGAATCAAAGTTA+AGG | + | chr3.4:86986793-86986812 | MS.gene013329:CDS | 45.0% |
| ! | TATACCGATTGAGGTGTACG+TGG | - | chr3.4:86982940-86982959 | None:intergenic | 45.0% |
| !!! | GCATTTTTGGGTTGGTGATG+AGG | + | chr3.4:86986484-86986503 | MS.gene013329:CDS | 45.0% |
| !!! | ATTAAAATTTTCATATATAA+CGG | + | chr3.4:86985040-86985059 | MS.gene013329:intron | 5.0% |
| !!! | TTTATTTAAGTTTTTATATA+TGG | - | chr3.4:86983717-86983736 | None:intergenic | 5.0% |
| AAACTGGGGGACTGAAATCC+TGG | + | chr3.4:86984931-86984950 | MS.gene013329:intron | 50.0% | |
| AGCACCACGTACACCTCAAT+CGG | + | chr3.4:86982933-86982952 | MS.gene013329:CDS | 50.0% | |
| ATGCCGGAAATCACTGCTAC+CGG | + | chr3.4:86986284-86986303 | MS.gene013329:CDS | 50.0% | |
| CAAACTACACAGATGGGCAC+TGG | + | chr3.4:86986777-86986796 | MS.gene013329:CDS | 50.0% | |
| CTGCACATTTCAGCTCCTGA+TGG | + | chr3.4:86986358-86986377 | MS.gene013329:CDS | 50.0% | |
| CTTGGTAGAGAAGGGCAAAC+AGG | - | chr3.4:86985459-86985478 | None:intergenic | 50.0% | |
| GATGACATGGTAACTGTGGG+AGG | - | chr3.4:86986923-86986942 | None:intergenic | 50.0% | |
| GGCCTTGCTACCTCATTCAA+AGG | + | chr3.4:86985591-86985610 | MS.gene013329:CDS | 50.0% | |
| TGCCCTTCTCTACCAAGTCT+CGG | + | chr3.4:86985462-86985481 | MS.gene013329:CDS | 50.0% | |
| TGGCTCAGCACCAAACAACA+TGG | - | chr3.4:86986531-86986550 | None:intergenic | 50.0% | |
| ! | AGCACATGCAAAGTGGTGGA+AGG | + | chr3.4:86986658-86986677 | MS.gene013329:CDS | 50.0% |
| ! | ATGGTAACTGTGGGAGGTGT+TGG | - | chr3.4:86986917-86986936 | None:intergenic | 50.0% |
| ! | GATCCGAGACTTGGTAGAGA+AGG | - | chr3.4:86985468-86985487 | None:intergenic | 50.0% |
| ! | GGAAAAGCATGTTGCGGCAT+TGG | + | chr3.4:86986855-86986874 | MS.gene013329:CDS | 50.0% |
| ! | GTCAAAGCAGAAGGCACAGT+TGG | + | chr3.4:86986727-86986746 | MS.gene013329:CDS | 50.0% |
| !! | GGATGCAGACTTGATAACGC+TGG | - | chr3.4:86984260-86984279 | None:intergenic | 50.0% |
| CCTACAATGGAGGGGACCAA+GGG | + | chr3.4:86986402-86986421 | MS.gene013329:CDS | 55.0% | |
| CTACCAAGTCTCGGATCTCC+TGG | + | chr3.4:86985471-86985490 | MS.gene013329:CDS | 55.0% | |
| GCACTTCCTATGAGAGGCAG+AGG | + | chr3.4:86985777-86985796 | MS.gene013329:CDS | 55.0% | |
| GTACCAGGAGATCCGAGACT+TGG | - | chr3.4:86985477-86985496 | None:intergenic | 55.0% | |
| GTGAACAGGTGGATATGGGG+TGG | + | chr3.4:86985180-86985199 | MS.gene013329:intron | 55.0% | |
| TATGGGGTGGCTCAGATCCT+CGG | + | chr3.4:86985193-86985212 | MS.gene013329:CDS | 55.0% | |
| TCCTACAATGGAGGGGACCA+AGG | + | chr3.4:86986401-86986420 | MS.gene013329:CDS | 55.0% | |
| TGTATGCAGGTCCCCTCATG+TGG | - | chr3.4:86984045-86984064 | None:intergenic | 55.0% | |
| TTTGGAAGCAGCAGGGTGGA+AGG | + | chr3.4:86986100-86986119 | MS.gene013329:CDS | 55.0% | |
| ! | AGAAGCGGTTTGGAAGCAGC+AGG | + | chr3.4:86986092-86986111 | MS.gene013329:CDS | 55.0% |
| ! | AGCAGAAGGCACAGTTGGAG+TGG | + | chr3.4:86986732-86986751 | MS.gene013329:CDS | 55.0% |
| ! | GAAGCGGTTTGGAAGCAGCA+GGG | + | chr3.4:86986093-86986112 | MS.gene013329:CDS | 55.0% |
| ! | GCAGAAGGCACAGTTGGAGT+GGG | + | chr3.4:86986733-86986752 | MS.gene013329:CDS | 55.0% |
| ! | GGCATTGGGGAGAGAGTAAC+TGG | + | chr3.4:86986870-86986889 | MS.gene013329:CDS | 55.0% |
| CCCTTGGTCCCCTCCATTGT+AGG | - | chr3.4:86986405-86986424 | None:intergenic | 60.0% | |
| GGAGTGGGATCGAAGCCAAG+CGG | + | chr3.4:86986748-86986767 | MS.gene013329:CDS | 60.0% | |
| CACCTGCAGCTTGCAGCTGC+TGG | + | chr3.4:86985570-86985589 | MS.gene013329:CDS | 65.0% | |
| ! | GCGGTTTGGAAGCAGCAGGG+TGG | + | chr3.4:86986096-86986115 | MS.gene013329:CDS | 65.0% |
| GGCCAGCAGCTGCAAGCTGC+AGG | - | chr3.4:86985575-86985594 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 86982850 | 86986958 | 86982850 | ID=MS.gene013329 |
| chr3.4 | mRNA | 86982850 | 86986958 | 86982850 | ID=MS.gene013329.t1;Parent=MS.gene013329 |
| chr3.4 | exon | 86982850 | 86982954 | 86982850 | ID=MS.gene013329.t1.exon1;Parent=MS.gene013329.t1 |
| chr3.4 | CDS | 86982850 | 86982954 | 86982850 | ID=cds.MS.gene013329.t1;Parent=MS.gene013329.t1 |
| chr3.4 | exon | 86983169 | 86983239 | 86983169 | ID=MS.gene013329.t1.exon2;Parent=MS.gene013329.t1 |
| chr3.4 | CDS | 86983169 | 86983239 | 86983169 | ID=cds.MS.gene013329.t1;Parent=MS.gene013329.t1 |
| chr3.4 | exon | 86984629 | 86984835 | 86984629 | ID=MS.gene013329.t1.exon3;Parent=MS.gene013329.t1 |
| chr3.4 | CDS | 86984629 | 86984835 | 86984629 | ID=cds.MS.gene013329.t1;Parent=MS.gene013329.t1 |
| chr3.4 | exon | 86985188 | 86985798 | 86985188 | ID=MS.gene013329.t1.exon4;Parent=MS.gene013329.t1 |
| chr3.4 | CDS | 86985188 | 86985798 | 86985188 | ID=cds.MS.gene013329.t1;Parent=MS.gene013329.t1 |
| chr3.4 | exon | 86985928 | 86986958 | 86985928 | ID=MS.gene013329.t1.exon5;Parent=MS.gene013329.t1 |
| chr3.4 | CDS | 86985928 | 86986958 | 86985928 | ID=cds.MS.gene013329.t1;Parent=MS.gene013329.t1 |
| Gene Sequence |
| Protein sequence |
