Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013410.t1 | XP_013461535.1 | 98.3 | 345 | 6 | 0 | 1 | 345 | 1 | 345 | 1.70E-181 | 645.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013410.t1 | Q8RXL8 | 78.0 | 354 | 69 | 1 | 1 | 345 | 1 | 354 | 5.7e-149 | 528.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013410.t1 | A0A072VBK1 | 98.3 | 345 | 6 | 0 | 1 | 345 | 1 | 345 | 1.2e-181 | 645.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene013410 | MS.gene88927 | PPI |
| MS.gene24078 | MS.gene013410 | PPI |
| MS.gene013410 | MS.gene24076 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013410.t1 | MTR_3g094270 | 98.261 | 345 | 6 | 0 | 1 | 345 | 1 | 345 | 0.0 | 688 |
| MS.gene013410.t1 | MTR_3g094260 | 84.527 | 349 | 50 | 1 | 1 | 345 | 1 | 349 | 0.0 | 584 |
| MS.gene013410.t1 | MTR_4g058860 | 66.565 | 329 | 109 | 1 | 1 | 328 | 1 | 329 | 6.08e-155 | 439 |
| MS.gene013410.t1 | MTR_2g094640 | 64.458 | 332 | 114 | 2 | 1 | 328 | 1 | 332 | 2.54e-152 | 432 |
| MS.gene013410.t1 | MTR_8g092190 | 40.780 | 282 | 160 | 4 | 18 | 295 | 21 | 299 | 6.96e-59 | 193 |
| MS.gene013410.t1 | MTR_3g095130 | 37.993 | 279 | 172 | 1 | 18 | 295 | 21 | 299 | 7.86e-59 | 193 |
| MS.gene013410.t1 | MTR_1g026590 | 36.585 | 328 | 197 | 3 | 13 | 329 | 14 | 341 | 3.10e-55 | 184 |
| MS.gene013410.t1 | MTR_1g098240 | 38.516 | 283 | 173 | 1 | 14 | 295 | 17 | 299 | 4.82e-54 | 180 |
| MS.gene013410.t1 | MTR_5g004620 | 36.949 | 295 | 179 | 3 | 5 | 294 | 8 | 300 | 4.76e-51 | 173 |
| MS.gene013410.t1 | MTR_3g095130 | 36.777 | 242 | 151 | 2 | 56 | 295 | 9 | 250 | 2.92e-48 | 164 |
| MS.gene013410.t1 | MTR_1291s0010 | 70.874 | 103 | 30 | 0 | 1 | 103 | 1 | 103 | 3.34e-42 | 142 |
| MS.gene013410.t1 | MTR_5g096310 | 28.783 | 337 | 221 | 4 | 10 | 333 | 55 | 385 | 3.04e-36 | 135 |
| MS.gene013410.t1 | MTR_2g038410 | 27.893 | 337 | 225 | 5 | 3 | 331 | 43 | 369 | 1.43e-32 | 125 |
| MS.gene013410.t1 | MTR_3g072380 | 25.397 | 315 | 217 | 6 | 22 | 325 | 26 | 333 | 5.09e-25 | 103 |
| MS.gene013410.t1 | MTR_1g030320 | 24.921 | 317 | 219 | 6 | 22 | 325 | 25 | 335 | 4.57e-24 | 101 |
| MS.gene013410.t1 | MTR_4g114360 | 25.152 | 330 | 205 | 13 | 22 | 329 | 25 | 334 | 8.74e-15 | 74.7 |
| MS.gene013410.t1 | MTR_0011s0320 | 23.939 | 330 | 211 | 12 | 22 | 329 | 25 | 336 | 1.39e-14 | 74.3 |
| MS.gene013410.t1 | MTR_3g107470 | 24.302 | 358 | 224 | 14 | 1 | 330 | 1 | 339 | 8.30e-14 | 72.0 |
| MS.gene013410.t1 | MTR_2g070400 | 24.269 | 342 | 233 | 11 | 1 | 325 | 1 | 333 | 6.91e-11 | 63.2 |
| MS.gene013410.t1 | MTR_7g110380 | 23.724 | 333 | 228 | 11 | 22 | 341 | 26 | 345 | 8.96e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013410.t1 | AT1G06890 | 77.966 | 354 | 69 | 1 | 1 | 345 | 1 | 354 | 0.0 | 537 |
| MS.gene013410.t1 | AT1G06890 | 77.966 | 354 | 69 | 1 | 1 | 345 | 1 | 354 | 0.0 | 537 |
| MS.gene013410.t1 | AT2G30460 | 77.429 | 350 | 74 | 1 | 1 | 345 | 1 | 350 | 0.0 | 533 |
| MS.gene013410.t1 | AT2G30460 | 77.429 | 350 | 74 | 1 | 1 | 345 | 1 | 350 | 0.0 | 533 |
| MS.gene013410.t1 | AT1G06890 | 80.896 | 335 | 64 | 0 | 1 | 335 | 1 | 335 | 0.0 | 529 |
| MS.gene013410.t1 | AT1G06890 | 80.896 | 335 | 64 | 0 | 1 | 335 | 1 | 335 | 0.0 | 529 |
| MS.gene013410.t1 | AT2G30460 | 73.112 | 331 | 82 | 2 | 20 | 345 | 1 | 329 | 9.87e-178 | 496 |
| MS.gene013410.t1 | AT2G30460 | 73.112 | 331 | 82 | 2 | 20 | 345 | 1 | 329 | 9.87e-178 | 496 |
| MS.gene013410.t1 | AT2G30460 | 73.112 | 331 | 82 | 2 | 20 | 345 | 1 | 329 | 9.87e-178 | 496 |
| MS.gene013410.t1 | AT2G28315 | 63.848 | 343 | 119 | 2 | 1 | 339 | 1 | 342 | 4.79e-154 | 436 |
| MS.gene013410.t1 | AT2G28315 | 66.978 | 321 | 94 | 1 | 1 | 321 | 1 | 309 | 2.42e-152 | 431 |
| MS.gene013410.t1 | AT2G30460 | 83.333 | 222 | 37 | 0 | 1 | 222 | 1 | 222 | 1.81e-119 | 348 |
| MS.gene013410.t1 | AT4G09810 | 39.873 | 316 | 181 | 4 | 13 | 321 | 16 | 329 | 3.49e-66 | 212 |
| MS.gene013410.t1 | AT1G34020 | 37.942 | 311 | 184 | 4 | 18 | 321 | 21 | 329 | 1.21e-61 | 200 |
| MS.gene013410.t1 | AT1G34020 | 37.942 | 311 | 184 | 4 | 18 | 321 | 21 | 329 | 1.21e-61 | 200 |
| MS.gene013410.t1 | AT1G34020 | 37.942 | 311 | 184 | 4 | 18 | 321 | 21 | 329 | 1.21e-61 | 200 |
| MS.gene013410.t1 | AT1G21070 | 38.591 | 298 | 177 | 3 | 12 | 305 | 16 | 311 | 4.05e-59 | 194 |
| MS.gene013410.t1 | AT5G42420 | 35.350 | 314 | 197 | 2 | 12 | 319 | 16 | 329 | 1.02e-58 | 193 |
| MS.gene013410.t1 | AT1G76670 | 36.991 | 319 | 195 | 3 | 5 | 319 | 8 | 324 | 1.84e-58 | 192 |
| MS.gene013410.t1 | AT1G76670 | 36.991 | 319 | 195 | 3 | 5 | 319 | 8 | 324 | 1.84e-58 | 192 |
| MS.gene013410.t1 | AT4G39390 | 35.238 | 315 | 199 | 3 | 12 | 321 | 16 | 330 | 2.52e-57 | 189 |
| MS.gene013410.t1 | AT4G39390 | 35.238 | 315 | 199 | 3 | 12 | 321 | 20 | 334 | 2.64e-57 | 189 |
| MS.gene013410.t1 | AT4G39390 | 35.238 | 315 | 199 | 3 | 12 | 321 | 20 | 334 | 2.64e-57 | 189 |
| MS.gene013410.t1 | AT4G09810 | 39.464 | 261 | 151 | 3 | 66 | 321 | 14 | 272 | 4.65e-56 | 184 |
| MS.gene013410.t1 | AT4G09810 | 41.905 | 210 | 118 | 2 | 13 | 220 | 16 | 223 | 5.66e-45 | 154 |
| MS.gene013410.t1 | AT5G55950 | 29.240 | 342 | 220 | 5 | 10 | 335 | 56 | 391 | 1.96e-39 | 144 |
| MS.gene013410.t1 | AT5G55950 | 29.167 | 336 | 216 | 5 | 15 | 337 | 1 | 327 | 1.11e-38 | 140 |
| MS.gene013410.t1 | AT5G57100 | 29.655 | 290 | 196 | 2 | 10 | 295 | 63 | 348 | 4.36e-36 | 135 |
| MS.gene013410.t1 | AT5G55950 | 29.097 | 299 | 196 | 4 | 46 | 337 | 20 | 309 | 3.77e-35 | 130 |
| MS.gene013410.t1 | AT5G55950 | 30.992 | 242 | 155 | 3 | 10 | 245 | 56 | 291 | 2.77e-28 | 112 |
| MS.gene013410.t1 | AT5G42420 | 27.389 | 314 | 155 | 7 | 12 | 319 | 16 | 262 | 4.67e-27 | 108 |
| MS.gene013410.t1 | AT5G57100 | 28.750 | 240 | 163 | 2 | 10 | 245 | 63 | 298 | 6.48e-27 | 108 |
| MS.gene013410.t1 | AT5G57100 | 30.303 | 198 | 134 | 1 | 98 | 295 | 40 | 233 | 4.17e-25 | 102 |
| MS.gene013410.t1 | AT5G57100 | 31.395 | 172 | 114 | 1 | 10 | 177 | 63 | 234 | 1.11e-21 | 93.6 |
| MS.gene013410.t1 | AT1G77610 | 24.444 | 315 | 221 | 5 | 22 | 325 | 20 | 328 | 3.16e-20 | 90.5 |
| MS.gene013410.t1 | AT1G21870 | 24.419 | 344 | 245 | 5 | 1 | 332 | 1 | 341 | 9.13e-20 | 89.4 |
| MS.gene013410.t1 | AT5G11230 | 25.070 | 359 | 224 | 12 | 9 | 330 | 1 | 351 | 1.09e-17 | 83.6 |
| MS.gene013410.t1 | AT5G25400 | 26.111 | 360 | 231 | 13 | 1 | 338 | 1 | 347 | 1.88e-17 | 82.8 |
| MS.gene013410.t1 | AT2G25520 | 25.360 | 347 | 215 | 11 | 1 | 319 | 1 | 331 | 4.68e-16 | 78.6 |
| MS.gene013410.t1 | AT4G32390 | 25.479 | 365 | 237 | 15 | 1 | 345 | 1 | 350 | 2.45e-15 | 76.6 |
| MS.gene013410.t1 | AT5G05820 | 23.826 | 298 | 208 | 4 | 11 | 295 | 11 | 302 | 3.76e-11 | 63.5 |
| MS.gene013410.t1 | AT3G11320 | 24.497 | 298 | 206 | 6 | 11 | 295 | 11 | 302 | 5.83e-11 | 63.2 |
Find 49 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAGTACATTTCTTGTAAT+TGG | 0.131705 | 3.3:-78432842 | MS.gene013410:CDS |
| TTCTCTTGCAATCCTACTTT+TGG | 0.149841 | 3.3:-78433781 | MS.gene013410:CDS |
| GTTGATAATCGGACCATATT+TGG | 0.190871 | 3.3:-78433046 | MS.gene013410:CDS |
| GAGAAACATACTAGGAATTT+TGG | 0.218917 | 3.3:-78432723 | MS.gene013410:CDS |
| GTAGGATTGCAAGAGAAAAT+TGG | 0.229086 | 3.3:+78433787 | None:intergenic |
| CCCCTCATTAACGTGGAAAA+TGG | 0.263001 | 3.3:-78432489 | MS.gene013410:CDS |
| ACATGTCTTGTACTGGCTTT+TGG | 0.278525 | 3.3:-78432776 | MS.gene013410:CDS |
| CAGAAAGCGGTGATGGGATT+TGG | 0.280505 | 3.3:-78434940 | MS.gene013410:CDS |
| AACAAGGTTGCTGCCTGATA+TGG | 0.285190 | 3.3:+78433066 | None:intergenic |
| TGGGTTGTTAAATTTGAGTC+TGG | 0.300848 | 3.3:-78434896 | MS.gene013410:CDS |
| AGTATGTTTCTCCAACTAAA+AGG | 0.331771 | 3.3:+78432734 | None:intergenic |
| TAATTCTGTTGGATTCTATC+AGG | 0.347592 | 3.3:-78434869 | MS.gene013410:intron |
| TTCATGTCTTATTTCTATCT+CGG | 0.391540 | 3.3:-78432870 | MS.gene013410:CDS |
| ATATCAATCATGTCCATATC+AGG | 0.392944 | 3.3:-78433079 | MS.gene013410:CDS |
| CCAAGGACTTGATAGGTAAC+TGG | 0.410728 | 3.3:+78432809 | None:intergenic |
| TAGGATTGCAAGAGAAAATT+GGG | 0.413584 | 3.3:+78433788 | None:intergenic |
| GGGTTGTTAAATTTGAGTCT+GGG | 0.441493 | 3.3:-78434895 | MS.gene013410:CDS |
| GCAGCAACCTTGTTGATAAT+CGG | 0.448341 | 3.3:-78433057 | MS.gene013410:CDS |
| ATCACCGCTTTCTGCTCAAA+AGG | 0.450801 | 3.3:+78434949 | None:intergenic |
| CCAGTTACCTATCAAGTCCT+TGG | 0.462236 | 3.3:-78432809 | MS.gene013410:CDS |
| TTCTGAATGGAATCTCGATT+GGG | 0.468543 | 3.3:-78434915 | MS.gene013410:CDS |
| ATTCTGAATGGAATCTCGAT+TGG | 0.469832 | 3.3:-78434916 | MS.gene013410:CDS |
| GTGCACCGATAGTTCCCAAT+TGG | 0.471388 | 3.3:+78436099 | None:intergenic |
| GATTTACAACTCAATGCGTT+GGG | 0.485909 | 3.3:-78433735 | MS.gene013410:CDS |
| CAGCTACAACATTGACAAGT+TGG | 0.486149 | 3.3:-78435035 | MS.gene013410:CDS |
| AATTCCGTGTACTATTCTAC+TGG | 0.494484 | 3.3:-78434727 | MS.gene013410:CDS |
| CAATTCCAACACCCAAAAGT+AGG | 0.494991 | 3.3:+78433769 | None:intergenic |
| TGATTTACAACTCAATGCGT+TGG | 0.498236 | 3.3:-78433736 | MS.gene013410:CDS |
| TTTAGTTGGAGAAACATACT+AGG | 0.501343 | 3.3:-78432731 | MS.gene013410:CDS |
| ATGGGATTTGGAATTCTGAA+TGG | 0.502641 | 3.3:-78434928 | MS.gene013410:CDS |
| TCTTAAGACATGTCTTGTAC+TGG | 0.504547 | 3.3:-78432783 | MS.gene013410:CDS |
| AACTGCAGCACAAGCATCAC+AGG | 0.509626 | 3.3:-78432633 | MS.gene013410:intron |
| GATTCTCAAGAATGCAAAAG+TGG | 0.512823 | 3.3:+78432672 | None:intergenic |
| AAGATGTCCAAGGACTTGAT+AGG | 0.521804 | 3.3:+78432802 | None:intergenic |
| AAATTCCAATTGGGAACTAT+CGG | 0.532072 | 3.3:-78436104 | MS.gene013410:CDS |
| ACAAAGAATAAGATGGGTGA+TGG | 0.542736 | 3.3:-78436131 | None:intergenic |
| ATGCATTCAGATGACAAAGT+TGG | 0.545812 | 3.3:-78434754 | MS.gene013410:intron |
| TTTGAGCAGAAAGCGGTGAT+GGG | 0.547487 | 3.3:-78434946 | MS.gene013410:CDS |
| GAAGTACAATATTGAACAAG+AGG | 0.558506 | 3.3:-78432467 | MS.gene013410:CDS |
| ATTCTCAAGAATGCAAAAGT+GGG | 0.604113 | 3.3:+78432673 | None:intergenic |
| ATCTGATCCCCTCATTAACG+TGG | 0.611663 | 3.3:-78432496 | MS.gene013410:CDS |
| CAAGTACACAACACAAGTGA+CGG | 0.633666 | 3.3:-78432989 | MS.gene013410:intron |
| GTCGATTGTGATTTGTAACA+AGG | 0.635859 | 3.3:-78436051 | MS.gene013410:CDS |
| ATACATAAGCATCCCAACCA+TGG | 0.648173 | 3.3:+78432697 | None:intergenic |
| CGGTGCACTGAGTCTATCTG+TGG | 0.660483 | 3.3:-78436084 | MS.gene013410:CDS |
| AATAAGACATGAAAGAACGA+TGG | 0.661070 | 3.3:+78432880 | None:intergenic |
| ATATGGTCCGATTATCAACA+AGG | 0.669721 | 3.3:+78433050 | None:intergenic |
| ATCTCCAGTAGAATAGTACA+CGG | 0.681945 | 3.3:+78434723 | None:intergenic |
| GACATGTCTTAAGATGTCCA+AGG | 0.714030 | 3.3:+78432792 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGAAAAAATATATGATATT+AGG | + | chr3.3:78433181-78433200 | None:intergenic | 10.0% |
| !! | TAAAAGTAATATTGATAAAA+TGG | + | chr3.3:78434523-78434542 | None:intergenic | 10.0% |
| !!! | AAAAATGATAATGATAATTT+TGG | + | chr3.3:78434379-78434398 | None:intergenic | 10.0% |
| !!! | TAAATAATTTAATTTAAACG+AGG | - | chr3.3:78432695-78432714 | MS.gene013410:CDS | 10.0% |
| !! | TAAACACAAAAAATAGATAA+TGG | + | chr3.3:78434166-78434185 | None:intergenic | 15.0% |
| !! | TAAATTATTAAGGTTATTAC+TGG | - | chr3.3:78434581-78434600 | MS.gene013410:intron | 15.0% |
| !! | TCGTTAAAAATAATTTCATA+AGG | + | chr3.3:78434995-78435014 | None:intergenic | 15.0% |
| !!! | ACTTATATTTTCTCTTATTA+TGG | - | chr3.3:78435178-78435197 | MS.gene013410:intron | 15.0% |
| !!! | ATTATCATTATCATTTTTTC+TGG | - | chr3.3:78434381-78434400 | MS.gene013410:intron | 15.0% |
| !!! | ATTTATTTTAATCGACAATA+AGG | + | chr3.3:78432940-78432959 | None:intergenic | 15.0% |
| !!! | TTTTTATTTGCAATTTGATA+TGG | - | chr3.3:78432582-78432601 | MS.gene013410:intron | 15.0% |
| !! | AAAATATTAAAAAGGAACGA+AGG | - | chr3.3:78434680-78434699 | MS.gene013410:intron | 20.0% |
| !! | AACTATAAAATGTTTGAGTA+AGG | + | chr3.3:78434237-78434256 | None:intergenic | 20.0% |
| !! | ACAAAAGTAACAAAGTTAAT+TGG | - | chr3.3:78434623-78434642 | MS.gene013410:intron | 20.0% |
| !! | CAAAATAAAATCTATGAATG+CGG | + | chr3.3:78433359-78433378 | None:intergenic | 20.0% |
| !! | CAGTAAATACTTTAATAGTT+AGG | + | chr3.3:78433276-78433295 | None:intergenic | 20.0% |
| !! | GAAATTGAGATAATTGTAAA+TGG | + | chr3.3:78433981-78434000 | None:intergenic | 20.0% |
| !! | TTATCGTCTATATACATTTA+TGG | - | chr3.3:78433895-78433914 | MS.gene013410:intron | 20.0% |
| !! | TTTAGTACATTTCTTGTAAT+TGG | - | chr3.3:78435714-78435733 | MS.gene013410:intron | 20.0% |
| !!! | ATATAAGATCTTTTTTGTTC+CGG | + | chr3.3:78433004-78433023 | None:intergenic | 20.0% |
| !!! | ATTAAAGTATTTACTGGATT+TGG | - | chr3.3:78433280-78433299 | MS.gene013410:intron | 20.0% |
| !!! | CTAACTATTAAAGTATTTAC+TGG | - | chr3.3:78433274-78433293 | MS.gene013410:intron | 20.0% |
| !!! | GCATTCATAGATTTTATTTT+GGG | - | chr3.3:78433358-78433377 | MS.gene013410:intron | 20.0% |
| !!! | TATCATAAGAGCAATTTTAT+AGG | + | chr3.3:78435072-78435091 | None:intergenic | 20.0% |
| !!! | TTAAAGTATTTACTGGATTT+GGG | - | chr3.3:78433281-78433300 | MS.gene013410:intron | 20.0% |
| ! | AAATGTATATAGACGATAAG+AGG | + | chr3.3:78433894-78433913 | None:intergenic | 25.0% |
| ! | ACAAAGTTAATTGGTTACTT+TGG | - | chr3.3:78434632-78434651 | MS.gene013410:intron | 25.0% |
| ! | ATTAGAACTTATCATCAACA+AGG | + | chr3.3:78432888-78432907 | None:intergenic | 25.0% |
| ! | CCATGATAAAACTAATTGAA+TGG | + | chr3.3:78433239-78433258 | None:intergenic | 25.0% |
| ! | TAATATTGATAAAATGGCAG+AGG | + | chr3.3:78434517-78434536 | None:intergenic | 25.0% |
| ! | TATATGATATTAGGTCACAT+CGG | + | chr3.3:78433172-78433191 | None:intergenic | 25.0% |
| ! | TATTTGCAATTTGATATGGT+TGG | - | chr3.3:78432586-78432605 | MS.gene013410:intron | 25.0% |
| ! | TCTCCATTTCTCAAAATAAA+TGG | + | chr3.3:78434210-78434229 | None:intergenic | 25.0% |
| !! | AATCCTTTATTGTTGTTGTT+TGG | - | chr3.3:78433739-78433758 | MS.gene013410:CDS | 25.0% |
| !! | ACATAATTTTTCTGCAAATG+CGG | + | chr3.3:78434456-78434475 | None:intergenic | 25.0% |
| !! | AGTACATTGCAATTCATTTT+TGG | - | chr3.3:78432536-78432555 | MS.gene013410:intron | 25.0% |
| !! | CAAGAGTGAAATTTTCTTTA+AGG | + | chr3.3:78434900-78434919 | None:intergenic | 25.0% |
| !! | CTTTTTCCTTATTCCAAATA+GGG | + | chr3.3:78436117-78436136 | None:intergenic | 25.0% |
| !! | GTGAGAATTTTATCCAAATA+TGG | + | chr3.3:78435526-78435545 | None:intergenic | 25.0% |
| !! | TCTTTTTCCTTATTCCAAAT+AGG | + | chr3.3:78436118-78436137 | None:intergenic | 25.0% |
| !! | TTGATAGATTTGAGATTCTT+TGG | - | chr3.3:78432719-78432738 | MS.gene013410:CDS | 25.0% |
| !! | TTTTATATCCTACGTAGTTA+AGG | - | chr3.3:78433432-78433451 | MS.gene013410:intron | 25.0% |
| !! | TTTTTATGCATATGTTCCAA+GGG | + | chr3.3:78433098-78433117 | None:intergenic | 25.0% |
| !! | TTTTTCCTTATTCCAAATAG+GGG | + | chr3.3:78436116-78436135 | None:intergenic | 25.0% |
| !!! | AACTGCTCTAGTTTTTAAAA+TGG | - | chr3.3:78434922-78434941 | MS.gene013410:CDS | 25.0% |
| !!! | AAGAAACCTTAAACTTTTTC+TGG | + | chr3.3:78435444-78435463 | None:intergenic | 25.0% |
| !!! | ACTCCATTTATTTTGAGAAA+TGG | - | chr3.3:78434204-78434223 | MS.gene013410:intron | 25.0% |
| !!! | ATCCTTTATTGTTGTTGTTT+GGG | - | chr3.3:78433740-78433759 | MS.gene013410:CDS | 25.0% |
| !!! | CCATTCAATTAGTTTTATCA+TGG | - | chr3.3:78433236-78433255 | MS.gene013410:intron | 25.0% |
| !!! | CGCATTCATAGATTTTATTT+TGG | - | chr3.3:78433357-78433376 | MS.gene013410:intron | 25.0% |
| !!! | TAAAAGAGTGCTTACATATA+AGG | + | chr3.3:78434058-78434077 | None:intergenic | 25.0% |
| !!! | TTCATGTCTTATTTCTATCT+CGG | - | chr3.3:78435686-78435705 | MS.gene013410:intron | 25.0% |
| !!! | TTTTTTATGCATATGTTCCA+AGG | + | chr3.3:78433099-78433118 | None:intergenic | 25.0% |
| AAATATGTTGCTAACAACAC+AGG | - | chr3.3:78435016-78435035 | MS.gene013410:CDS | 30.0% | |
| AAATTCCAATTGGGAACTAT+CGG | - | chr3.3:78432452-78432471 | MS.gene013410:CDS | 30.0% | |
| AATAAGACATGAAAGAACGA+TGG | + | chr3.3:78435679-78435698 | None:intergenic | 30.0% | |
| AATATGTTGCTAACAACACA+GGG | - | chr3.3:78435017-78435036 | MS.gene013410:CDS | 30.0% | |
| AATTTATCCTATTAGTCCCT+TGG | - | chr3.3:78433079-78433098 | MS.gene013410:CDS | 30.0% | |
| AGTATGTTTCTCCAACTAAA+AGG | + | chr3.3:78435825-78435844 | None:intergenic | 30.0% | |
| ATAAGTTTGAATGTTCGTTG+AGG | - | chr3.3:78432852-78432871 | MS.gene013410:CDS | 30.0% | |
| ATATCAATCATGTCCATATC+AGG | - | chr3.3:78435477-78435496 | MS.gene013410:intron | 30.0% | |
| ATATGTCATCTCACATACAA+AGG | + | chr3.3:78435140-78435159 | None:intergenic | 30.0% | |
| ATTCTCAAGAATGCAAAAGT+GGG | + | chr3.3:78435886-78435905 | None:intergenic | 30.0% | |
| CATTTCATTTGAGCATGATT+TGG | - | chr3.3:78435289-78435308 | MS.gene013410:intron | 30.0% | |
| GAAGTACAATATTGAACAAG+AGG | - | chr3.3:78436089-78436108 | MS.gene013410:CDS | 30.0% | |
| GAGACTTGTGAATATCATAA+AGG | + | chr3.3:78434328-78434347 | None:intergenic | 30.0% | |
| GATGGAGAAAAATTCCAATT+GGG | - | chr3.3:78432443-78432462 | MS.gene013410:CDS | 30.0% | |
| TAAGTTTGAATGTTCGTTGA+GGG | - | chr3.3:78432853-78432872 | MS.gene013410:CDS | 30.0% | |
| TAATTCTGTTGGATTCTATC+AGG | - | chr3.3:78433687-78433706 | MS.gene013410:CDS | 30.0% | |
| TAGGATTGCAAGAGAAAATT+GGG | + | chr3.3:78434771-78434790 | None:intergenic | 30.0% | |
| TATGTCATCTCACATACAAA+GGG | + | chr3.3:78435139-78435158 | None:intergenic | 30.0% | |
| TGATGGAGAAAAATTCCAAT+TGG | - | chr3.3:78432442-78432461 | MS.gene013410:CDS | 30.0% | |
| TGTGTCTTTGTCTTTCTAAA+TGG | + | chr3.3:78434006-78434025 | None:intergenic | 30.0% | |
| TTAGATATGTAGACGTCTAA+AGG | - | chr3.3:78433471-78433490 | MS.gene013410:intron | 30.0% | |
| TTTAGTTGGAGAAACATACT+AGG | - | chr3.3:78435825-78435844 | MS.gene013410:intron | 30.0% | |
| ! | GAGAAACATACTAGGAATTT+TGG | - | chr3.3:78435833-78435852 | MS.gene013410:intron | 30.0% |
| ! | TACATTTTGTTCTCTTCATG+TGG | - | chr3.3:78433555-78433574 | MS.gene013410:intron | 30.0% |
| ! | TCTACATATCTAAGACAAGT+AGG | + | chr3.3:78433464-78433483 | None:intergenic | 30.0% |
| ! | TGTAAGCACTCTTTTATTAC+AGG | - | chr3.3:78434062-78434081 | MS.gene013410:intron | 30.0% |
| ! | TTTACCAATAAAAAAGCACG+AGG | + | chr3.3:78435978-78435997 | None:intergenic | 30.0% |
| ! | TTTTCCTTATTCCAAATAGG+GGG | + | chr3.3:78436115-78436134 | None:intergenic | 30.0% |
| ! | TTTTTCTTGGCAAGAAATTC+AGG | - | chr3.3:78433858-78433877 | MS.gene013410:intron | 30.0% |
| !! | AACCTTAAACTTTTTCTGGA+TGG | + | chr3.3:78435440-78435459 | None:intergenic | 30.0% |
| !! | TTCTTTGGAATCACATCAAA+TGG | - | chr3.3:78432734-78432753 | MS.gene013410:CDS | 30.0% |
| !!! | ATGAGTTTTTTTTTCTTCCG+TGG | - | chr3.3:78432623-78432642 | MS.gene013410:intron | 30.0% |
| !!! | GACTTGCACTATTTTTTGTT+AGG | - | chr3.3:78432807-78432826 | MS.gene013410:CDS | 30.0% |
| !!! | TATTCCTCGTGCTTTTTTAT+TGG | - | chr3.3:78435971-78435990 | MS.gene013410:intron | 30.0% |
| AATTCCGTGTACTATTCTAC+TGG | - | chr3.3:78433829-78433848 | MS.gene013410:intron | 35.0% | |
| ATATGGTCCGATTATCAACA+AGG | + | chr3.3:78435509-78435528 | None:intergenic | 35.0% | |
| ATATGTTCCAAGGGACTAAT+AGG | + | chr3.3:78433089-78433108 | None:intergenic | 35.0% | |
| ATCATGAAAAAGCAGATGCA+TGG | + | chr3.3:78432671-78432690 | None:intergenic | 35.0% | |
| ATCTCCAGTAGAATAGTACA+CGG | + | chr3.3:78433836-78433855 | None:intergenic | 35.0% | |
| ATGCATTCAGATGACAAAGT+TGG | - | chr3.3:78433802-78433821 | MS.gene013410:intron | 35.0% | |
| ATTCTGAATGGAATCTCGAT+TGG | - | chr3.3:78433640-78433659 | MS.gene013410:intron | 35.0% | |
| CACCATCCAGAAAAAGTTTA+AGG | - | chr3.3:78435435-78435454 | MS.gene013410:intron | 35.0% | |
| CCTGAAAACATTGGAAAACA+AGG | + | chr3.3:78436027-78436046 | None:intergenic | 35.0% | |
| GATTCTCAAGAATGCAAAAG+TGG | + | chr3.3:78435887-78435906 | None:intergenic | 35.0% | |
| GATTTACAACTCAATGCGTT+GGG | - | chr3.3:78434821-78434840 | MS.gene013410:intron | 35.0% | |
| GGGTTGTTAAATTTGAGTCT+GGG | - | chr3.3:78433661-78433680 | MS.gene013410:intron | 35.0% | |
| GTAGACGTCTAAAGGTTTAA+TGG | - | chr3.3:78433479-78433498 | MS.gene013410:intron | 35.0% | |
| GTAGGATTGCAAGAGAAAAT+TGG | + | chr3.3:78434772-78434791 | None:intergenic | 35.0% | |
| GTCTTTGTCTTTCTAAATGG+AGG | + | chr3.3:78434003-78434022 | None:intergenic | 35.0% | |
| TATGATATTCACAAGTCTCG+AGG | - | chr3.3:78434329-78434348 | MS.gene013410:intron | 35.0% | |
| TCTTAAGACATGTCTTGTAC+TGG | - | chr3.3:78435773-78435792 | MS.gene013410:intron | 35.0% | |
| TGATTTACAACTCAATGCGT+TGG | - | chr3.3:78434820-78434839 | MS.gene013410:intron | 35.0% | |
| TGCCCAAACAACAACAATAA+AGG | + | chr3.3:78433745-78433764 | None:intergenic | 35.0% | |
| TGGGTTGTTAAATTTGAGTC+TGG | - | chr3.3:78433660-78433679 | MS.gene013410:intron | 35.0% | |
| TTCTGAATGGAATCTCGATT+GGG | - | chr3.3:78433641-78433660 | MS.gene013410:intron | 35.0% | |
| TTTCCAAGACATCGTGTAAT+TGG | - | chr3.3:78434276-78434295 | MS.gene013410:intron | 35.0% | |
| ! | ACATATCTAAGACAAGTAGG+AGG | + | chr3.3:78433461-78433480 | None:intergenic | 35.0% |
| ! | AGAGTGCTTACATATAAGGA+CGG | + | chr3.3:78434054-78434073 | None:intergenic | 35.0% |
| ! | AGAGTGCTTACATATATGGA+CGG | - | chr3.3:78434088-78434107 | MS.gene013410:intron | 35.0% |
| ! | ATGGGATTTGGAATTCTGAA+TGG | - | chr3.3:78433628-78433647 | MS.gene013410:intron | 35.0% |
| ! | CTACTGGAGATTCTTTTTCT+TGG | - | chr3.3:78433845-78433864 | MS.gene013410:intron | 35.0% |
| ! | GTCGATTGTGATTTGTAACA+AGG | - | chr3.3:78432505-78432524 | MS.gene013410:CDS | 35.0% |
| ! | TCATCCATGATTTGTACATC+AGG | - | chr3.3:78432975-78432994 | MS.gene013410:intron | 35.0% |
| ! | TCCATTTTCCACGTTAATGA+GGG | + | chr3.3:78436071-78436090 | None:intergenic | 35.0% |
| ! | TTCCATTTTCCACGTTAATG+AGG | + | chr3.3:78436072-78436091 | None:intergenic | 35.0% |
| ! | TTCTCTTGCAATCCTACTTT+TGG | - | chr3.3:78434775-78434794 | MS.gene013410:intron | 35.0% |
| ! | TTGTACGTGATCCTTTTAGT+TGG | - | chr3.3:78435811-78435830 | MS.gene013410:intron | 35.0% |
| !! | AATGTTTTCAGGCAAGAGAA+GGG | - | chr3.3:78436035-78436054 | MS.gene013410:CDS | 35.0% |
| !! | GCAAAGAGTGCTTACATATA+TGG | - | chr3.3:78434084-78434103 | MS.gene013410:intron | 35.0% |
| !! | GTTGATAATCGGACCATATT+TGG | - | chr3.3:78435510-78435529 | MS.gene013410:intron | 35.0% |
| !! | TCTCTTGCAATCCTACTTTT+GGG | - | chr3.3:78434776-78434795 | MS.gene013410:intron | 35.0% |
| !!! | AGTCTGGGTTTTAATTCTGT+TGG | - | chr3.3:78433676-78433695 | MS.gene013410:intron | 35.0% |
| !!! | CCTTGTTTTCCAATGTTTTC+AGG | - | chr3.3:78436024-78436043 | MS.gene013410:CDS | 35.0% |
| !!! | GATTTTATTTTGGGCACAAG+AGG | - | chr3.3:78433367-78433386 | MS.gene013410:intron | 35.0% |
| AAATGCGGCGAAAGAAACAT+AGG | + | chr3.3:78434441-78434460 | None:intergenic | 40.0% | |
| AAGATGTCCAAGGACTTGAT+AGG | + | chr3.3:78435757-78435776 | None:intergenic | 40.0% | |
| AATGCGGCGAAAGAAACATA+GGG | + | chr3.3:78434440-78434459 | None:intergenic | 40.0% | |
| ATACATAAGCATCCCAACCA+TGG | + | chr3.3:78435862-78435881 | None:intergenic | 40.0% | |
| CAAGTACACAACACAAGTGA+CGG | - | chr3.3:78435567-78435586 | MS.gene013410:intron | 40.0% | |
| CAATTCCAACACCCAAAAGT+AGG | + | chr3.3:78434790-78434809 | None:intergenic | 40.0% | |
| CAGCTACAACATTGACAAGT+TGG | - | chr3.3:78433521-78433540 | MS.gene013410:intron | 40.0% | |
| CTTCTCTTGCCTGAAAACAT+TGG | + | chr3.3:78436036-78436055 | None:intergenic | 40.0% | |
| GACATGTCTTAAGATGTCCA+AGG | + | chr3.3:78435767-78435786 | None:intergenic | 40.0% | |
| GCTATGTTGACCACTTGAAA+AGG | - | chr3.3:78435326-78435345 | MS.gene013410:intron | 40.0% | |
| TCACATACAAAGGGAAGCTT+GGG | + | chr3.3:78435130-78435149 | None:intergenic | 40.0% | |
| TGCTTACATATATGGACGGA+TGG | - | chr3.3:78434092-78434111 | MS.gene013410:intron | 40.0% | |
| TTGCCAATTACACGATGTCT+TGG | + | chr3.3:78434282-78434301 | None:intergenic | 40.0% | |
| ! | CCATTTTCCACGTTAATGAG+GGG | + | chr3.3:78436070-78436089 | None:intergenic | 40.0% |
| ! | GGGCTCTTTCTTATCTTTTC+TGG | - | chr3.3:78434841-78434860 | MS.gene013410:intron | 40.0% |
| !! | AACCTATCGTCCTTTTCAAG+TGG | + | chr3.3:78435339-78435358 | None:intergenic | 40.0% |
| !! | ACTAGGAATTTTGGTAGCCA+TGG | - | chr3.3:78435842-78435861 | MS.gene013410:intron | 40.0% |
| !! | ATGTTTTCAGGCAAGAGAAG+GGG | - | chr3.3:78436036-78436055 | MS.gene013410:CDS | 40.0% |
| !! | CAATGTTTTCAGGCAAGAGA+AGG | - | chr3.3:78436034-78436053 | MS.gene013410:CDS | 40.0% |
| !! | GAATTTTGGTAGCCATGGTT+GGG | - | chr3.3:78435847-78435866 | MS.gene013410:intron | 40.0% |
| !! | GCAGCAACCTTGTTGATAAT+CGG | - | chr3.3:78435499-78435518 | MS.gene013410:intron | 40.0% |
| !!! | ACATGTCTTGTACTGGCTTT+TGG | - | chr3.3:78435780-78435799 | MS.gene013410:intron | 40.0% |
| AACAAGGTTGCTGCCTGATA+TGG | + | chr3.3:78435493-78435512 | None:intergenic | 45.0% | |
| ACATGCAGTAACAGTCACCA+CGG | + | chr3.3:78432643-78432662 | None:intergenic | 45.0% | |
| ATCACCGCTTTCTGCTCAAA+AGG | + | chr3.3:78433610-78433629 | None:intergenic | 45.0% | |
| ATCTGATCCCCTCATTAACG+TGG | - | chr3.3:78436060-78436079 | MS.gene013410:CDS | 45.0% | |
| CCAAGGACTTGATAGGTAAC+TGG | + | chr3.3:78435750-78435769 | None:intergenic | 45.0% | |
| CCAGTTACCTATCAAGTCCT+TGG | - | chr3.3:78435747-78435766 | MS.gene013410:intron | 45.0% | |
| CCCCTCATTAACGTGGAAAA+TGG | - | chr3.3:78436067-78436086 | MS.gene013410:CDS | 45.0% | |
| CTCACATACAAAGGGAAGCT+TGG | + | chr3.3:78435131-78435150 | None:intergenic | 45.0% | |
| GACCACTTGAAAAGGACGAT+AGG | - | chr3.3:78435334-78435353 | MS.gene013410:intron | 45.0% | |
| GCTGCCTGATGTACAAATCA+TGG | + | chr3.3:78432982-78433001 | None:intergenic | 45.0% | |
| GTGCTTACATATAAGGACGG+AGG | + | chr3.3:78434051-78434070 | None:intergenic | 45.0% | |
| TTTGAGCAGAAAGCGGTGAT+GGG | - | chr3.3:78433610-78433629 | MS.gene013410:intron | 45.0% | |
| ! | CAAGCCTTTTGAGCAGAAAG+CGG | - | chr3.3:78433603-78433622 | MS.gene013410:intron | 45.0% |
| ! | TGATTTGTACATCAGGCAGC+CGG | - | chr3.3:78432982-78433001 | MS.gene013410:intron | 45.0% |
| ! | TTTTGAGCAGAAAGCGGTGA+TGG | - | chr3.3:78433609-78433628 | MS.gene013410:intron | 45.0% |
| !! | AGGAGTATCGAGATGCTTAC+TGG | - | chr3.3:78432827-78432846 | MS.gene013410:CDS | 45.0% |
| !! | GCAATCCTACTTTTGGGTGT+TGG | - | chr3.3:78434782-78434801 | MS.gene013410:intron | 45.0% |
| !! | GGAATTTTGGTAGCCATGGT+TGG | - | chr3.3:78435846-78435865 | MS.gene013410:intron | 45.0% |
| !! | AAAAATACAAAATATTAAAA+AGG | - | chr3.3:78434672-78434691 | MS.gene013410:intron | 5.0% |
| !! | TACAATATATTAAATTATTA+AGG | - | chr3.3:78434571-78434590 | MS.gene013410:intron | 5.0% |
| AACTGCAGCACAAGCATCAC+AGG | - | chr3.3:78435923-78435942 | MS.gene013410:intron | 50.0% | |
| GGAGGAAGCCTTAACTACGT+AGG | + | chr3.3:78433443-78433462 | None:intergenic | 50.0% | |
| TGAACAAGAGGCCCCCTATT+TGG | - | chr3.3:78436101-78436120 | MS.gene013410:CDS | 50.0% | |
| ! | GAGGCCCCCTATTTGGAATA+AGG | - | chr3.3:78436108-78436127 | MS.gene013410:CDS | 50.0% |
| ! | GTGCACCGATAGTTCCCAAT+TGG | + | chr3.3:78432460-78432479 | None:intergenic | 50.0% |
| !! | CAGAAAGCGGTGATGGGATT+TGG | - | chr3.3:78433616-78433635 | MS.gene013410:intron | 50.0% |
| CGGTGCACTGAGTCTATCTG+TGG | - | chr3.3:78432472-78432491 | MS.gene013410:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 78432437 | 78436141 | 78432437 | ID=MS.gene013410 |
| chr3.3 | mRNA | 78432437 | 78436141 | 78432437 | ID=MS.gene013410.t1;Parent=MS.gene013410 |
| chr3.3 | exon | 78436021 | 78436141 | 78436021 | ID=MS.gene013410.t1.exon1;Parent=MS.gene013410.t1 |
| chr3.3 | CDS | 78436021 | 78436141 | 78436021 | ID=cds.MS.gene013410.t1;Parent=MS.gene013410.t1 |
| chr3.3 | exon | 78434870 | 78435054 | 78434870 | ID=MS.gene013410.t1.exon2;Parent=MS.gene013410.t1 |
| chr3.3 | CDS | 78434870 | 78435054 | 78434870 | ID=cds.MS.gene013410.t1;Parent=MS.gene013410.t1 |
| chr3.3 | exon | 78434699 | 78434766 | 78434699 | ID=MS.gene013410.t1.exon3;Parent=MS.gene013410.t1 |
| chr3.3 | CDS | 78434699 | 78434766 | 78434699 | ID=cds.MS.gene013410.t1;Parent=MS.gene013410.t1 |
| chr3.3 | exon | 78433686 | 78433818 | 78433686 | ID=MS.gene013410.t1.exon4;Parent=MS.gene013410.t1 |
| chr3.3 | CDS | 78433686 | 78433818 | 78433686 | ID=cds.MS.gene013410.t1;Parent=MS.gene013410.t1 |
| chr3.3 | exon | 78432990 | 78433151 | 78432990 | ID=MS.gene013410.t1.exon5;Parent=MS.gene013410.t1 |
| chr3.3 | CDS | 78432990 | 78433151 | 78432990 | ID=cds.MS.gene013410.t1;Parent=MS.gene013410.t1 |
| chr3.3 | exon | 78432634 | 78432906 | 78432634 | ID=MS.gene013410.t1.exon6;Parent=MS.gene013410.t1 |
| chr3.3 | CDS | 78432634 | 78432906 | 78432634 | ID=cds.MS.gene013410.t1;Parent=MS.gene013410.t1 |
| chr3.3 | exon | 78432437 | 78432532 | 78432437 | ID=MS.gene013410.t1.exon7;Parent=MS.gene013410.t1 |
| chr3.3 | CDS | 78432437 | 78432532 | 78432437 | ID=cds.MS.gene013410.t1;Parent=MS.gene013410.t1 |
| Gene Sequence |
| Protein sequence |
