Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24076.t1 | XP_013466230.1 | 99.7 | 345 | 1 | 0 | 1 | 345 | 1 | 345 | 9.50E-164 | 586.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24076.t1 | Q9LPU2 | 72.9 | 343 | 93 | 0 | 2 | 344 | 5 | 347 | 5.5e-136 | 485.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24076.t1 | A0A072VF94 | 99.7 | 345 | 1 | 0 | 1 | 345 | 1 | 345 | 6.9e-164 | 586.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene24076 | 0.83904 | 2.01E-57 | -1.69E-46 |
| MS.gene049143 | MS.gene24076 | 0.801183 | 1.02E-48 | -1.69E-46 |
| MS.gene049350 | MS.gene24076 | 0.854036 | 1.61E-61 | -1.69E-46 |
| MS.gene049395 | MS.gene24076 | 0.800261 | 1.57E-48 | -1.69E-46 |
| MS.gene049411 | MS.gene24076 | 0.816375 | 5.71E-52 | -1.69E-46 |
| MS.gene049807 | MS.gene24076 | 0.894961 | 1.51E-75 | -1.69E-46 |
| MS.gene049887 | MS.gene24076 | 0.903085 | 4.99E-79 | -1.69E-46 |
| MS.gene050689 | MS.gene24076 | 0.820676 | 6.05E-53 | -1.69E-46 |
| MS.gene050752 | MS.gene24076 | 0.841123 | 5.75E-58 | -1.69E-46 |
| MS.gene050838 | MS.gene24076 | 0.887238 | 1.70E-72 | -1.69E-46 |
| MS.gene050955 | MS.gene24076 | 0.818983 | 1.47E-52 | -1.69E-46 |
| MS.gene051003 | MS.gene24076 | 0.843704 | 1.19E-58 | -1.69E-46 |
| MS.gene051233 | MS.gene24076 | 0.811546 | 6.63E-51 | -1.69E-46 |
| MS.gene051234 | MS.gene24076 | 0.898546 | 4.77E-77 | -1.69E-46 |
| MS.gene051343 | MS.gene24076 | 0.822561 | 2.22E-53 | -1.69E-46 |
| MS.gene051381 | MS.gene24076 | 0.804989 | 1.66E-49 | -1.69E-46 |
| MS.gene051642 | MS.gene24076 | 0.829663 | 4.54E-55 | -1.69E-46 |
| MS.gene051700 | MS.gene24076 | 0.800876 | 1.17E-48 | -1.69E-46 |
| MS.gene051724 | MS.gene24076 | 0.835423 | 1.69E-56 | -1.69E-46 |
| MS.gene051852 | MS.gene24076 | 0.80701 | 6.23E-50 | -1.69E-46 |
| MS.gene051885 | MS.gene24076 | 0.861969 | 7.06E-64 | -1.69E-46 |
| MS.gene051902 | MS.gene24076 | 0.81077 | 9.77E-51 | -1.69E-46 |
| MS.gene052072 | MS.gene24076 | 0.847344 | 1.23E-59 | -1.69E-46 |
| MS.gene052242 | MS.gene24076 | -0.801701 | 7.95E-49 | -1.69E-46 |
| MS.gene052307 | MS.gene24076 | 0.862899 | 3.65E-64 | -1.69E-46 |
| MS.gene052335 | MS.gene24076 | 0.865351 | 6.29E-65 | -1.69E-46 |
| MS.gene052463 | MS.gene24076 | 0.80665 | 7.42E-50 | -1.69E-46 |
| MS.gene052516 | MS.gene24076 | 0.832592 | 8.66E-56 | -1.69E-46 |
| MS.gene052533 | MS.gene24076 | 0.81085 | 9.39E-51 | -1.69E-46 |
| MS.gene052609 | MS.gene24076 | 0.855854 | 4.77E-62 | -1.69E-46 |
| MS.gene052932 | MS.gene24076 | 0.801574 | 8.44E-49 | -1.69E-46 |
| MS.gene052947 | MS.gene24076 | 0.800426 | 1.45E-48 | -1.69E-46 |
| MS.gene053143 | MS.gene24076 | 0.869984 | 2.06E-66 | -1.69E-46 |
| MS.gene053144 | MS.gene24076 | 0.863729 | 2.02E-64 | -1.69E-46 |
| MS.gene053581 | MS.gene24076 | 0.843345 | 1.48E-58 | -1.69E-46 |
| MS.gene054004 | MS.gene24076 | 0.817006 | 4.12E-52 | -1.69E-46 |
| MS.gene054250 | MS.gene24076 | 0.800505 | 1.40E-48 | -1.69E-46 |
| MS.gene054403 | MS.gene24076 | 0.839694 | 1.36E-57 | -1.69E-46 |
| MS.gene054584 | MS.gene24076 | 0.837937 | 3.87E-57 | -1.69E-46 |
| MS.gene054709 | MS.gene24076 | 0.81218 | 4.83E-51 | -1.69E-46 |
| MS.gene054824 | MS.gene24076 | 0.816856 | 4.46E-52 | -1.69E-46 |
| MS.gene055311 | MS.gene24076 | 0.801612 | 8.30E-49 | -1.69E-46 |
| MS.gene05538 | MS.gene24076 | 0.812384 | 4.36E-51 | -1.69E-46 |
| MS.gene055468 | MS.gene24076 | 0.816509 | 5.33E-52 | -1.69E-46 |
| MS.gene055469 | MS.gene24076 | 0.832916 | 7.19E-56 | -1.69E-46 |
| MS.gene055513 | MS.gene24076 | 0.85231 | 5.02E-61 | -1.69E-46 |
| MS.gene055537 | MS.gene24076 | 0.802941 | 4.42E-49 | -1.69E-46 |
| MS.gene055580 | MS.gene24076 | -0.812786 | 3.56E-51 | -1.69E-46 |
| MS.gene055891 | MS.gene24076 | 0.81604 | 6.79E-52 | -1.69E-46 |
| MS.gene055975 | MS.gene24076 | 0.813794 | 2.14E-51 | -1.69E-46 |
| MS.gene056005 | MS.gene24076 | 0.809737 | 1.63E-50 | -1.69E-46 |
| MS.gene056043 | MS.gene24076 | -0.824696 | 7.02E-54 | -1.69E-46 |
| MS.gene056075 | MS.gene24076 | 0.817879 | 2.62E-52 | -1.69E-46 |
| MS.gene056181 | MS.gene24076 | 0.825305 | 5.04E-54 | -1.69E-46 |
| MS.gene056308 | MS.gene24076 | 0.841186 | 5.54E-58 | -1.69E-46 |
| MS.gene056390 | MS.gene24076 | 0.827104 | 1.88E-54 | -1.69E-46 |
| MS.gene056578 | MS.gene24076 | 0.840681 | 7.51E-58 | -1.69E-46 |
| MS.gene056699 | MS.gene24076 | 0.818809 | 1.61E-52 | -1.69E-46 |
| MS.gene056881 | MS.gene24076 | 0.80666 | 7.39E-50 | -1.69E-46 |
| MS.gene057102 | MS.gene24076 | 0.853519 | 2.27E-61 | -1.69E-46 |
| MS.gene058149 | MS.gene24076 | 0.816111 | 6.54E-52 | -1.69E-46 |
| MS.gene058330 | MS.gene24076 | 0.802165 | 6.39E-49 | -1.69E-46 |
| MS.gene058492 | MS.gene24076 | 0.839545 | 1.49E-57 | -1.69E-46 |
| MS.gene058638 | MS.gene24076 | 0.815979 | 7.00E-52 | -1.69E-46 |
| MS.gene058639 | MS.gene24076 | 0.833288 | 5.81E-56 | -1.69E-46 |
| MS.gene058720 | MS.gene24076 | 0.835844 | 1.32E-56 | -1.69E-46 |
| MS.gene058758 | MS.gene24076 | 0.810653 | 1.04E-50 | -1.69E-46 |
| MS.gene058852 | MS.gene24076 | 0.8446 | 6.84E-59 | -1.69E-46 |
| MS.gene059171 | MS.gene24076 | 0.869912 | 2.17E-66 | -1.69E-46 |
| MS.gene059227 | MS.gene24076 | 0.84984 | 2.50E-60 | -1.69E-46 |
| MS.gene059778 | MS.gene24076 | 0.829075 | 6.30E-55 | -1.69E-46 |
| MS.gene059965 | MS.gene24076 | 0.817298 | 3.55E-52 | -1.69E-46 |
| MS.gene060763 | MS.gene24076 | 0.801317 | 9.53E-49 | -1.69E-46 |
| MS.gene061006 | MS.gene24076 | 0.819498 | 1.13E-52 | -1.69E-46 |
| MS.gene061100 | MS.gene24076 | 0.856935 | 2.30E-62 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene24076 | MS.gene06507 | PPI |
| MS.gene049383 | MS.gene24076 | PPI |
| MS.gene059336 | MS.gene24076 | PPI |
| MS.gene06508 | MS.gene24076 | PPI |
| MS.gene013410 | MS.gene24076 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24076.t1 | MTR_1g026590 | 99.710 | 345 | 1 | 0 | 1 | 345 | 1 | 345 | 0.0 | 693 |
| MS.gene24076.t1 | MTR_5g004620 | 79.179 | 341 | 70 | 1 | 5 | 344 | 7 | 347 | 0.0 | 532 |
| MS.gene24076.t1 | MTR_8g092190 | 51.692 | 325 | 145 | 3 | 12 | 335 | 14 | 327 | 3.12e-106 | 315 |
| MS.gene24076.t1 | MTR_3g095130 | 50.156 | 321 | 147 | 5 | 2 | 316 | 6 | 319 | 3.22e-104 | 309 |
| MS.gene24076.t1 | MTR_1g098240 | 52.665 | 319 | 140 | 5 | 2 | 316 | 6 | 317 | 1.95e-101 | 301 |
| MS.gene24076.t1 | MTR_3g095130 | 50.368 | 272 | 126 | 3 | 51 | 316 | 2 | 270 | 8.13e-89 | 268 |
| MS.gene24076.t1 | MTR_4g058860 | 36.446 | 332 | 201 | 2 | 4 | 335 | 3 | 324 | 3.29e-66 | 213 |
| MS.gene24076.t1 | MTR_2g094640 | 39.298 | 285 | 171 | 1 | 14 | 298 | 13 | 295 | 3.89e-65 | 210 |
| MS.gene24076.t1 | MTR_3g094260 | 39.068 | 279 | 168 | 1 | 30 | 308 | 29 | 305 | 1.42e-61 | 201 |
| MS.gene24076.t1 | MTR_3g094270 | 35.897 | 312 | 189 | 4 | 30 | 341 | 29 | 329 | 3.62e-57 | 189 |
| MS.gene24076.t1 | MTR_5g096310 | 31.889 | 323 | 207 | 5 | 15 | 332 | 59 | 373 | 1.49e-27 | 111 |
| MS.gene24076.t1 | MTR_2g038410 | 29.781 | 319 | 205 | 9 | 19 | 332 | 62 | 366 | 1.49e-25 | 105 |
| MS.gene24076.t1 | MTR_3g072380 | 25.000 | 252 | 187 | 2 | 82 | 332 | 88 | 338 | 1.00e-16 | 80.5 |
| MS.gene24076.t1 | MTR_1g030320 | 23.373 | 338 | 224 | 9 | 16 | 337 | 22 | 340 | 1.07e-14 | 74.3 |
| MS.gene24076.t1 | MTR_5g081710 | 24.127 | 315 | 219 | 5 | 1 | 304 | 1 | 306 | 4.44e-12 | 66.2 |
| MS.gene24076.t1 | MTR_4g018760 | 26.621 | 293 | 186 | 8 | 22 | 297 | 23 | 303 | 5.46e-12 | 66.2 |
| MS.gene24076.t1 | MTR_4g101860 | 25.763 | 295 | 200 | 8 | 22 | 304 | 63 | 350 | 6.11e-12 | 66.2 |
| MS.gene24076.t1 | MTR_3g462070 | 23.390 | 295 | 209 | 5 | 22 | 305 | 20 | 308 | 9.53e-12 | 65.5 |
| MS.gene24076.t1 | MTR_3g070000 | 23.448 | 290 | 213 | 3 | 22 | 304 | 35 | 322 | 1.32e-11 | 65.1 |
| MS.gene24076.t1 | MTR_1291s0010 | 41.935 | 93 | 52 | 1 | 14 | 106 | 13 | 103 | 4.10e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24076.t1 | AT1G21070 | 79.883 | 343 | 69 | 0 | 2 | 344 | 5 | 347 | 0.0 | 559 |
| MS.gene24076.t1 | AT1G76670 | 79.883 | 343 | 68 | 1 | 2 | 344 | 5 | 346 | 0.0 | 549 |
| MS.gene24076.t1 | AT1G76670 | 79.883 | 343 | 68 | 1 | 2 | 344 | 5 | 346 | 0.0 | 549 |
| MS.gene24076.t1 | AT5G42420 | 77.746 | 346 | 74 | 2 | 2 | 344 | 4 | 349 | 0.0 | 541 |
| MS.gene24076.t1 | AT4G09810 | 51.713 | 321 | 142 | 5 | 2 | 316 | 6 | 319 | 1.33e-107 | 318 |
| MS.gene24076.t1 | AT1G34020 | 51.792 | 307 | 137 | 4 | 16 | 316 | 18 | 319 | 6.87e-103 | 306 |
| MS.gene24076.t1 | AT1G34020 | 51.792 | 307 | 137 | 4 | 16 | 316 | 18 | 319 | 6.87e-103 | 306 |
| MS.gene24076.t1 | AT1G34020 | 51.792 | 307 | 137 | 4 | 16 | 316 | 18 | 319 | 6.87e-103 | 306 |
| MS.gene24076.t1 | AT4G39390 | 48.137 | 322 | 162 | 3 | 3 | 321 | 10 | 329 | 2.82e-99 | 297 |
| MS.gene24076.t1 | AT4G39390 | 48.137 | 322 | 162 | 3 | 3 | 321 | 10 | 329 | 2.82e-99 | 297 |
| MS.gene24076.t1 | AT4G39390 | 48.137 | 322 | 162 | 3 | 3 | 321 | 6 | 325 | 3.04e-99 | 296 |
| MS.gene24076.t1 | AT5G42420 | 73.988 | 173 | 43 | 1 | 174 | 344 | 110 | 282 | 2.29e-88 | 267 |
| MS.gene24076.t1 | AT5G42420 | 79.245 | 106 | 21 | 1 | 2 | 106 | 4 | 109 | 2.68e-53 | 177 |
| MS.gene24076.t1 | AT4G09810 | 51.331 | 263 | 119 | 3 | 60 | 316 | 3 | 262 | 3.32e-87 | 264 |
| MS.gene24076.t1 | AT4G09810 | 53.982 | 226 | 100 | 2 | 2 | 227 | 6 | 227 | 3.20e-76 | 234 |
| MS.gene24076.t1 | AT2G28315 | 36.873 | 339 | 198 | 3 | 4 | 342 | 3 | 325 | 3.33e-67 | 215 |
| MS.gene24076.t1 | AT2G30460 | 39.157 | 332 | 176 | 3 | 3 | 322 | 2 | 319 | 4.16e-67 | 215 |
| MS.gene24076.t1 | AT2G30460 | 39.157 | 332 | 176 | 3 | 3 | 322 | 2 | 319 | 4.16e-67 | 215 |
| MS.gene24076.t1 | AT2G28315 | 39.661 | 295 | 176 | 1 | 4 | 298 | 3 | 295 | 5.49e-67 | 213 |
| MS.gene24076.t1 | AT1G06890 | 38.177 | 351 | 182 | 5 | 3 | 341 | 2 | 329 | 7.77e-66 | 212 |
| MS.gene24076.t1 | AT1G06890 | 38.177 | 351 | 182 | 5 | 3 | 341 | 2 | 329 | 8.90e-66 | 211 |
| MS.gene24076.t1 | AT1G06890 | 38.177 | 351 | 182 | 5 | 3 | 341 | 2 | 329 | 1.50e-65 | 211 |
| MS.gene24076.t1 | AT1G06890 | 38.177 | 351 | 182 | 5 | 3 | 341 | 2 | 329 | 1.50e-65 | 211 |
| MS.gene24076.t1 | AT2G30460 | 38.832 | 291 | 154 | 2 | 44 | 322 | 20 | 298 | 3.50e-63 | 204 |
| MS.gene24076.t1 | AT2G30460 | 38.832 | 291 | 154 | 2 | 44 | 322 | 20 | 298 | 3.50e-63 | 204 |
| MS.gene24076.t1 | AT2G30460 | 38.832 | 291 | 154 | 2 | 44 | 322 | 20 | 298 | 3.50e-63 | 204 |
| MS.gene24076.t1 | AT2G30460 | 38.667 | 225 | 136 | 1 | 3 | 227 | 2 | 224 | 4.32e-37 | 136 |
| MS.gene24076.t1 | AT5G55950 | 31.447 | 318 | 202 | 7 | 19 | 331 | 4 | 310 | 1.39e-32 | 124 |
| MS.gene24076.t1 | AT5G55950 | 31.447 | 318 | 202 | 7 | 19 | 331 | 64 | 370 | 2.93e-32 | 124 |
| MS.gene24076.t1 | AT5G57100 | 32.292 | 288 | 177 | 7 | 19 | 298 | 71 | 348 | 5.18e-29 | 115 |
| MS.gene24076.t1 | AT5G55950 | 30.068 | 296 | 193 | 6 | 41 | 331 | 6 | 292 | 1.40e-27 | 110 |
| MS.gene24076.t1 | AT5G57100 | 33.166 | 199 | 127 | 4 | 101 | 298 | 40 | 233 | 1.61e-21 | 93.2 |
| MS.gene24076.t1 | AT5G57100 | 31.224 | 237 | 147 | 5 | 19 | 248 | 71 | 298 | 1.92e-21 | 93.2 |
| MS.gene24076.t1 | AT5G55950 | 31.197 | 234 | 151 | 4 | 19 | 248 | 64 | 291 | 2.94e-21 | 92.8 |
| MS.gene24076.t1 | AT1G77610 | 24.138 | 319 | 215 | 8 | 16 | 320 | 17 | 322 | 1.22e-14 | 74.3 |
| MS.gene24076.t1 | AT5G57100 | 32.386 | 176 | 101 | 5 | 15 | 180 | 67 | 234 | 4.08e-14 | 72.0 |
| MS.gene24076.t1 | AT1G21870 | 24.269 | 342 | 227 | 13 | 7 | 332 | 14 | 339 | 2.28e-13 | 70.5 |
| MS.gene24076.t1 | AT1G12500 | 26.246 | 301 | 201 | 9 | 22 | 309 | 69 | 361 | 4.34e-12 | 67.0 |
| MS.gene24076.t1 | AT3G11320 | 23.793 | 290 | 212 | 3 | 22 | 304 | 21 | 308 | 1.48e-11 | 65.1 |
| MS.gene24076.t1 | AT5G05820 | 23.368 | 291 | 214 | 3 | 22 | 305 | 21 | 309 | 4.24e-11 | 63.5 |
| MS.gene24076.t1 | AT4G32272 | 24.771 | 218 | 143 | 6 | 88 | 298 | 135 | 338 | 5.03e-11 | 63.5 |
| MS.gene24076.t1 | AT4G32272 | 24.771 | 218 | 143 | 6 | 88 | 298 | 150 | 353 | 5.95e-11 | 63.5 |
Find 0 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAGAAAAAGAAACATT+TGG | + | 6092:21869-21888 | MS.gene24076:intron | 15.0% |
| !!! | AAAAAAAGAAGTTTGATTTA+AGG | - | 6092:22310-22329 | MS.gene24076:intergenic | 15.0% |
| !!! | AATAAATCTATTGATTTGTT+GGG | - | 6092:21902-21921 | MS.gene24076:intergenic | 15.0% |
| !!! | GAAAATGAAAATTTTAAAAC+TGG | - | 6092:21517-21536 | MS.gene24076:intergenic | 15.0% |
| !!! | TAATAAATCTATTGATTTGT+TGG | - | 6092:21903-21922 | MS.gene24076:intergenic | 15.0% |
| !! | AAAAAGAAACATTTGGTTAT+GGG | + | 6092:21876-21895 | MS.gene24076:intron | 20.0% |
| !! | AAAGGACATCTTAATATAAA+TGG | - | 6092:21815-21834 | MS.gene24076:intergenic | 20.0% |
| !! | AACACTTGAATATAAATAAC+AGG | - | 6092:21841-21860 | MS.gene24076:intergenic | 20.0% |
| !! | AATATAAATAACAGGAGAAA+AGG | - | 6092:21833-21852 | MS.gene24076:intergenic | 20.0% |
| !! | AATGAAATGTGAAAAATGAA+TGG | - | 6092:20831-20850 | MS.gene24076:intergenic | 20.0% |
| !! | ACTATATATGCATATATTGT+TGG | + | 6092:22645-22664 | MS.gene24076:intron | 20.0% |
| !! | ATGAAATGTGAAAAATGAAT+GGG | - | 6092:20830-20849 | MS.gene24076:intergenic | 20.0% |
| !!! | AATGAAAATTTTAAAACTGG+AGG | - | 6092:21514-21533 | MS.gene24076:intergenic | 20.0% |
| !!! | CATCATTTTTATTCTTTTGA+AGG | + | 6092:22023-22042 | MS.gene24076:intron | 20.0% |
| ! | AAAAAAAATCAGGTATAGCA+AGG | - | 6092:22388-22407 | MS.gene24076:intergenic | 25.0% |
| ! | AAAAAAATCAGGTATAGCAA+GGG | - | 6092:22387-22406 | MS.gene24076:intergenic | 25.0% |
| ! | AATTTAGAAATCAAACTGGT+TGG | - | 6092:22275-22294 | MS.gene24076:intergenic | 25.0% |
| ! | AGATTTAGAGATTAATGAGT+TGG | + | 6092:21254-21273 | MS.gene24076:intron | 25.0% |
| ! | ATGATTCTAAACCAGTAAAT+TGG | + | 6092:22123-22142 | MS.gene24076:intron | 25.0% |
| ! | CTACAAAAGAAATATTCGAT+TGG | + | 6092:22436-22455 | MS.gene24076:CDS | 25.0% |
| ! | GAAAAAGAAACATTTGGTTA+TGG | + | 6092:21875-21894 | MS.gene24076:intron | 25.0% |
| ! | GATGTAAATGTTAACTTCAA+AGG | + | 6092:21685-21704 | MS.gene24076:CDS | 25.0% |
| ! | TCTAGATTCAACACAAAAAA+AGG | - | 6092:22600-22619 | MS.gene24076:intergenic | 25.0% |
| ! | TGGTAATTTAGAAATCAAAC+TGG | - | 6092:22279-22298 | MS.gene24076:intergenic | 25.0% |
| ! | TGGTCTATGATAGAATATTA+TGG | + | 6092:21289-21308 | MS.gene24076:intron | 25.0% |
| !! | TTCAGCATCTTTTATTATCT+TGG | + | 6092:22220-22239 | MS.gene24076:intron | 25.0% |
| !! | TTTGATTTAAGGAAGAAACT+TGG | - | 6092:22299-22318 | MS.gene24076:intergenic | 25.0% |
| AAAAAGGTGATCACTTACAA+TGG | - | 6092:22584-22603 | None:intergenic | 30.0% | |
| AAACAGACTTCATTGTTAAC+AGG | + | 6092:22088-22107 | MS.gene24076:intron | 30.0% | |
| AAACTTCCTGTGTTATATAC+CGG | + | 6092:22336-22355 | MS.gene24076:intron | 30.0% | |
| AAATTAGGCTATTGAAGGAA+GGG | + | 6092:22988-23007 | MS.gene24076:CDS | 30.0% | |
| AACAGACTTCATTGTTAACA+GGG | + | 6092:22089-22108 | MS.gene24076:intron | 30.0% | |
| AACATTATGTGTTCTGACTT+TGG | + | 6092:22809-22828 | MS.gene24076:CDS | 30.0% | |
| AATGGTTATGCTTTCACTTT+CGG | + | 6092:20761-20780 | MS.gene24076:CDS | 30.0% | |
| ACATTATGTGTTCTGACTTT+GGG | + | 6092:22810-22829 | MS.gene24076:CDS | 30.0% | |
| AGAAGAAATTAGGCTATTGA+AGG | + | 6092:22983-23002 | MS.gene24076:CDS | 30.0% | |
| ATCAAAACTAAGCATGATTC+CGG | + | 6092:21558-21577 | MS.gene24076:CDS | 30.0% | |
| ATTAGCCATGATAATTCCAA+CGG | - | 6092:20723-20742 | MS.gene24076:intergenic | 30.0% | |
| CAACAATGGGAAAAAAAATC+AGG | - | 6092:22398-22417 | MS.gene24076:intergenic | 30.0% | |
| CAATTACTTGACCAATTTAC+TGG | - | 6092:22137-22156 | MS.gene24076:intergenic | 30.0% | |
| CAGTAAATTGGTCAAGTAAT+TGG | + | 6092:22135-22154 | MS.gene24076:intron | 30.0% | |
| CCAAGTTCAATATCTTTCAA+CGG | - | 6092:23026-23045 | MS.gene24076:intergenic | 30.0% | |
| CTGAGATAGTAATCAACAAA+TGG | - | 6092:22523-22542 | MS.gene24076:intergenic | 30.0% | |
| TACATTACAAAACACAGCTA+AGG | - | 6092:22727-22746 | MS.gene24076:intergenic | 30.0% | |
| TATCATAGACCACCATATTT+CGG | - | 6092:21281-21300 | MS.gene24076:intergenic | 30.0% | |
| TCATTACTACAGAATCTACA+GGG | - | 6092:21155-21174 | MS.gene24076:intergenic | 30.0% | |
| TCTTTACAGCAAATTGTAAG+TGG | + | 6092:21742-21761 | MS.gene24076:intron | 30.0% | |
| ! | AGTGTCTTTTAAATTTCTGC+AGG | + | 6092:22680-22699 | MS.gene24076:intron | 30.0% |
| ! | GAACACATAATGTTTTCATG+TGG | - | 6092:22803-22822 | MS.gene24076:intergenic | 30.0% |
| ! | GATCTAAAATGAACATTGAC+TGG | - | 6092:22068-22087 | MS.gene24076:intergenic | 30.0% |
| ! | TTTGTTGATTACTATCTCAG+TGG | + | 6092:22523-22542 | MS.gene24076:CDS | 30.0% |
| AAACAGCTTATGTCCAACAA+TGG | + | 6092:20743-20762 | MS.gene24076:CDS | 35.0% | |
| AATTAGGCTATTGAAGGAAG+GGG | + | 6092:22989-23008 | MS.gene24076:CDS | 35.0% | |
| ACAGACTTCATTGTTAACAG+GGG | + | 6092:22090-22109 | MS.gene24076:intron | 35.0% | |
| ACCAGAAGACATCTTAAAGT+TGG | - | 6092:22560-22579 | MS.gene24076:intergenic | 35.0% | |
| AGATGAAAAGCAAGCATACT+TGG | - | 6092:21087-21106 | MS.gene24076:intergenic | 35.0% | |
| ATAAGAGAGAGAGCTTGAAT+AGG | - | 6092:22490-22509 | MS.gene24076:intergenic | 35.0% | |
| ATGCTTAGAAGCAGAATAAC+CGG | - | 6092:20969-20988 | MS.gene24076:intergenic | 35.0% | |
| CATTATGTGTTCTGACTTTG+GGG | + | 6092:22811-22830 | MS.gene24076:CDS | 35.0% | |
| CCAACAAATAGCATGATTTC+CGG | - | 6092:22358-22377 | MS.gene24076:intergenic | 35.0% | |
| CCATTGTTGTGATAGTCAAT+CGG | + | 6092:22409-22428 | MS.gene24076:intron | 35.0% | |
| CCGTTGAAAGATATTGAACT+TGG | + | 6092:23023-23042 | MS.gene24076:CDS | 35.0% | |
| CGATTGACTATCACAACAAT+GGG | - | 6092:22411-22430 | MS.gene24076:intergenic | 35.0% | |
| CGGCATGGTAATTTATAGTT+GGG | + | 6092:22896-22915 | MS.gene24076:CDS | 35.0% | |
| CTCACTTTCAAGAACATCAT+GGG | + | 6092:22855-22874 | MS.gene24076:CDS | 35.0% | |
| GAAAGATATTGAACTTGGTC+AGG | + | 6092:23028-23047 | MS.gene24076:CDS | 35.0% | |
| GAAATTAGGCTATTGAAGGA+AGG | + | 6092:22987-23006 | MS.gene24076:CDS | 35.0% | |
| GCCTAACAGAAGAAGAAATT+AGG | + | 6092:22973-22992 | MS.gene24076:CDS | 35.0% | |
| GCCTAATTTCTTCTTCTGTT+AGG | - | 6092:22977-22996 | MS.gene24076:intergenic | 35.0% | |
| GCTCTCTCTCTTATTATTCT+TGG | + | 6092:22496-22515 | MS.gene24076:CDS | 35.0% | |
| GTCATTACTACAGAATCTAC+AGG | - | 6092:21156-21175 | MS.gene24076:intergenic | 35.0% | |
| GTGAAAAATGAATGGGATCT+GGG | - | 6092:20823-20842 | MS.gene24076:intergenic | 35.0% | |
| GTTGCCAATATATCTATCAC+CGG | + | 6092:21022-21041 | MS.gene24076:CDS | 35.0% | |
| GTTTCTCTTATAGATTTCCC+AGG | - | 6092:21225-21244 | MS.gene24076:intergenic | 35.0% | |
| TAAATTCCATATTGCCCACA+TGG | - | 6092:21789-21808 | MS.gene24076:intergenic | 35.0% | |
| TACAGACACATCTTTCATCT+GGG | + | 6092:21921-21940 | MS.gene24076:intron | 35.0% | |
| TCGGCATGGTAATTTATAGT+TGG | + | 6092:22895-22914 | MS.gene24076:CDS | 35.0% | |
| TGATTTCCGGTATATAACAC+AGG | - | 6092:22345-22364 | MS.gene24076:intergenic | 35.0% | |
| TGTGAAAAATGAATGGGATC+TGG | - | 6092:20824-20843 | MS.gene24076:intergenic | 35.0% | |
| TTACAGACACATCTTTCATC+TGG | + | 6092:21920-21939 | MS.gene24076:intron | 35.0% | |
| TTCTAAGCATGTTCCTTTGT+GGG | + | 6092:20979-20998 | MS.gene24076:CDS | 35.0% | |
| TTGAATTGAAGATGAGTGCT+AGG | + | 6092:21967-21986 | MS.gene24076:intron | 35.0% | |
| TTGCCAATATATCTATCACC+GGG | + | 6092:21023-21042 | MS.gene24076:CDS | 35.0% | |
| TTTCAAGAACATCATGGGAA+TGG | + | 6092:22860-22879 | MS.gene24076:CDS | 35.0% | |
| ! | AGTGAAAGCATAACCATTGT+TGG | - | 6092:20759-20778 | MS.gene24076:intergenic | 35.0% |
| ! | TAATGAGTTGGACCGAAATA+TGG | + | 6092:21266-21285 | MS.gene24076:intron | 35.0% |
| !! | AATATCGAACTTTGGAGCAT+GGG | + | 6092:20679-20698 | MS.gene24076:CDS | 35.0% |
| !! | ACCAACTTTAAGATGTCTTC+TGG | + | 6092:22556-22575 | MS.gene24076:CDS | 35.0% |
| !!! | TTAGGCTGTTTTTCGAATGA+GGG | - | 6092:22959-22978 | MS.gene24076:intergenic | 35.0% |
| AAAACTAAGCATGATTCCGG+TGG | + | 6092:21561-21580 | MS.gene24076:CDS | 40.0% | |
| AACCAAATAAGCTCCCACAA+AGG | - | 6092:20995-21014 | MS.gene24076:intergenic | 40.0% | |
| ATGGTTGTGGTTATTGGTGT+TGG | + | 6092:21646-21665 | MS.gene24076:CDS | 40.0% | |
| CATCCCGGTGATAGATATAT+TGG | - | 6092:21029-21048 | MS.gene24076:intergenic | 40.0% | |
| CCGATTGACTATCACAACAA+TGG | - | 6092:22412-22431 | MS.gene24076:intergenic | 40.0% | |
| CTTCTAAGCATGTTCCTTTG+TGG | + | 6092:20978-20997 | MS.gene24076:CDS | 40.0% | |
| GAAAGTGAAAACACGAGAGT+AGG | - | 6092:21480-21499 | MS.gene24076:intergenic | 40.0% | |
| GAGTTCCGTTGGAATTATCA+TGG | + | 6092:20715-20734 | MS.gene24076:CDS | 40.0% | |
| GCATACTTGGTAGAATCCAA+CGG | - | 6092:21074-21093 | MS.gene24076:intergenic | 40.0% | |
| GCTCACTTTCAAGAACATCA+TGG | + | 6092:22854-22873 | MS.gene24076:CDS | 40.0% | |
| GGTAATTTATAGTTGGGCTG+TGG | + | 6092:22902-22921 | MS.gene24076:CDS | 40.0% | |
| GGTGCAGATCTAATGTAATG+AGG | - | 6092:20802-20821 | MS.gene24076:intergenic | 40.0% | |
| TCAATCCTTAACCCACTAAC+CGG | - | 6092:21340-21359 | MS.gene24076:intergenic | 40.0% | |
| TCACAGCAAACACTACTCAA+GGG | + | 6092:21606-21625 | MS.gene24076:CDS | 40.0% | |
| TCGTCAGCAATATCGAACTT+TGG | + | 6092:20671-20690 | MS.gene24076:CDS | 40.0% | |
| TGATGATACAACTGCTACAC+AGG | - | 6092:21722-21741 | MS.gene24076:intergenic | 40.0% | |
| TTCACAGCAAACACTACTCA+AGG | + | 6092:21605-21624 | MS.gene24076:CDS | 40.0% | |
| TTCCTTTGTGGGAGCTTATT+TGG | + | 6092:20990-21009 | MS.gene24076:CDS | 40.0% | |
| ! | CCGGAAATCATGCTATTTGT+TGG | + | 6092:22355-22374 | MS.gene24076:intron | 40.0% |
| ! | TTTGCTGTAACTGCTCTTGT+CGG | + | 6092:20926-20945 | MS.gene24076:CDS | 40.0% |
| ! | TTTTCATGTGGCCTAAAACC+TGG | - | 6092:22791-22810 | MS.gene24076:intergenic | 40.0% |
| !! | ATATCGAACTTTGGAGCATG+GGG | + | 6092:20680-20699 | MS.gene24076:CDS | 40.0% |
| !! | CAATATCGAACTTTGGAGCA+TGG | + | 6092:20678-20697 | MS.gene24076:CDS | 40.0% |
| !! | CTTCCTTTTAGAGACATGTG+CGG | + | 6092:21407-21426 | MS.gene24076:intron | 40.0% |
| !! | TTGAGTAGTGTTTGCTGTGA+AGG | - | 6092:21606-21625 | MS.gene24076:intergenic | 40.0% |
| !!! | GTTAGGCTGTTTTTCGAATG+AGG | - | 6092:22960-22979 | MS.gene24076:intergenic | 40.0% |
| AATGTGTCTGTTCCACCATG+TGG | + | 6092:21771-21790 | MS.gene24076:intron | 45.0% | |
| ATCCAACGGAATTGAGCATG+AGG | - | 6092:21060-21079 | MS.gene24076:intergenic | 45.0% | |
| ATGAACGTTGTGAGTTCCGT+TGG | + | 6092:20704-20723 | MS.gene24076:CDS | 45.0% | |
| ATGTGTCTGTTCCACCATGT+GGG | + | 6092:21772-21791 | MS.gene24076:intron | 45.0% | |
| ATTCCATATTGCCCACATGG+TGG | - | 6092:21786-21805 | MS.gene24076:intergenic | 45.0% | |
| CATGAGGCTTAAGTTCATCC+CGG | - | 6092:21044-21063 | MS.gene24076:intergenic | 45.0% | |
| CATTCCATCACACAAACCAC+CGG | - | 6092:21580-21599 | MS.gene24076:intergenic | 45.0% | |
| CTACCGCACATGTCTCTAAA+AGG | - | 6092:21413-21432 | MS.gene24076:intergenic | 45.0% | |
| GGAATGGTTCTTGCAGTTGT+CGG | + | 6092:22876-22895 | MS.gene24076:CDS | 45.0% | |
| TAAGCCAGTACCTCTGCATT+GGG | + | 6092:22745-22764 | MS.gene24076:CDS | 45.0% | |
| TACCAGCGACTACTTTGACT+GGG | + | 6092:20897-20916 | MS.gene24076:intron | 45.0% | |
| TCGGTCATGGTTGTGGTTAT+TGG | + | 6092:21640-21659 | MS.gene24076:CDS | 45.0% | |
| TGTTCATCAGCACTATTCGC+TGG | - | 6092:22168-22187 | MS.gene24076:intergenic | 45.0% | |
| TTACCAGCGACTACTTTGAC+TGG | + | 6092:20896-20915 | MS.gene24076:intron | 45.0% | |
| ! | AGATTTCCCAGGTTTTCCAC+TGG | - | 6092:21214-21233 | MS.gene24076:intergenic | 45.0% |
| ! | CTCAAGGGAAGTGAAAGTGT+CGG | + | 6092:21621-21640 | MS.gene24076:CDS | 45.0% |
| ! | GCAGTTTCCTTCCAGGTTTT+AGG | + | 6092:22777-22796 | MS.gene24076:CDS | 45.0% |
| ! | TATGTGTTCTGACTTTGGGG+TGG | + | 6092:22814-22833 | MS.gene24076:CDS | 45.0% |
| ! | TGAGTTGGACCGAAATATGG+TGG | + | 6092:21269-21288 | MS.gene24076:intron | 45.0% |
| AACCCAGTCAAAGTAGTCGC+TGG | - | 6092:20902-20921 | MS.gene24076:intergenic | 50.0% | |
| ACTACAGCCAGTGGAAAACC+TGG | + | 6092:21204-21223 | MS.gene24076:intron | 50.0% | |
| AGCCTCATGCTCAATTCCGT+TGG | + | 6092:21055-21074 | MS.gene24076:CDS | 50.0% | |
| AGTCAGATCACTACAGCCAG+TGG | + | 6092:21195-21214 | MS.gene24076:intron | 50.0% | |
| CATGTGGCCTAAAACCTGGA+AGG | - | 6092:22787-22806 | MS.gene24076:intergenic | 50.0% | |
| CTACAGCCAGTGGAAAACCT+GGG | + | 6092:21205-21224 | MS.gene24076:intron | 50.0% | |
| CTTAACCCACTAACCGGAGT+CGG | - | 6092:21334-21353 | MS.gene24076:intergenic | 50.0% | |
| CTTCTCAGCAGTTTCCTTCC+AGG | + | 6092:22770-22789 | MS.gene24076:CDS | 50.0% | |
| GGACTCGTCTCAAATGCTAC+CGG | + | 6092:20947-20966 | MS.gene24076:CDS | 50.0% | |
| GTAAGCCAGTACCTCTGCAT+TGG | + | 6092:22744-22763 | MS.gene24076:CDS | 50.0% | |
| GTTCCACCATGTGGGCAATA+TGG | + | 6092:21780-21799 | MS.gene24076:intron | 50.0% | |
| TGAGGGAGAGTCTTCGCATT+TGG | - | 6092:22942-22961 | MS.gene24076:intergenic | 50.0% | |
| ! | CGGTGGTTTGTGTGATGGAA+TGG | + | 6092:21578-21597 | MS.gene24076:CDS | 50.0% |
| ! | GATTCCGGTGGTTTGTGTGA+TGG | + | 6092:21573-21592 | MS.gene24076:CDS | 50.0% |
| ! | TTGATCCATGTAGCCGACTC+CGG | + | 6092:21318-21337 | MS.gene24076:intron | 50.0% |
| !! | GAAAGTGTCGGTCATGGTTG+TGG | + | 6092:21633-21652 | MS.gene24076:CDS | 50.0% |
| !! | GGAAGTGAAAGTGTCGGTCA+TGG | + | 6092:21627-21646 | MS.gene24076:CDS | 50.0% |
| ACTAACCGGAGTCGGCTACA+TGG | - | 6092:21326-21345 | MS.gene24076:intergenic | 55.0% | |
| GGTTCTTGCAGTTGTCGGCA+TGG | + | 6092:22881-22900 | MS.gene24076:CDS | 55.0% | |
| ! | ATGTAGCCGACTCCGGTTAG+TGG | + | 6092:21325-21344 | MS.gene24076:intron | 55.0% |
| ! | TGTAGCCGACTCCGGTTAGT+GGG | + | 6092:21326-21345 | MS.gene24076:intron | 55.0% |
| !! | CGACTCCGGTTAGTGGGTTA+AGG | + | 6092:21332-21351 | MS.gene24076:intron | 55.0% |
| ! | AGCGCCCAATGCAGAGGTAC+TGG | - | 6092:22752-22771 | MS.gene24076:intergenic | 60.0% |
| !! | CTGAGAAGCGCCCAATGCAG+AGG | - | 6092:22758-22777 | MS.gene24076:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 6092 | gene | 20653 | 23061 | 20653 | ID=MS.gene24076 |
| 6092 | mRNA | 20653 | 23061 | 20653 | ID=MS.gene24076.t1;Parent=MS.gene24076 |
| 6092 | exon | 20653 | 20782 | 20653 | ID=MS.gene24076.t1.exon1;Parent=MS.gene24076.t1 |
| 6092 | CDS | 20653 | 20782 | 20653 | ID=cds.MS.gene24076.t1;Parent=MS.gene24076.t1 |
| 6092 | exon | 20903 | 21087 | 20903 | ID=MS.gene24076.t1.exon2;Parent=MS.gene24076.t1 |
| 6092 | CDS | 20903 | 21087 | 20903 | ID=cds.MS.gene24076.t1;Parent=MS.gene24076.t1 |
| 6092 | exon | 21556 | 21756 | 21556 | ID=MS.gene24076.t1.exon3;Parent=MS.gene24076.t1 |
| 6092 | CDS | 21556 | 21756 | 21556 | ID=cds.MS.gene24076.t1;Parent=MS.gene24076.t1 |
| 6092 | exon | 22424 | 22585 | 22424 | ID=MS.gene24076.t1.exon4;Parent=MS.gene24076.t1 |
| 6092 | CDS | 22424 | 22585 | 22424 | ID=cds.MS.gene24076.t1;Parent=MS.gene24076.t1 |
| 6092 | exon | 22702 | 23061 | 22702 | ID=MS.gene24076.t1.exon5;Parent=MS.gene24076.t1 |
| 6092 | CDS | 22702 | 23061 | 22702 | ID=cds.MS.gene24076.t1;Parent=MS.gene24076.t1 |
| Gene Sequence |
| Protein sequence |
