Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24078.t1 | XP_013466230.1 | 99.7 | 328 | 1 | 0 | 1 | 328 | 18 | 345 | 1.40E-153 | 552.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24078.t1 | Q9LPU2 | 73.1 | 327 | 88 | 0 | 1 | 327 | 21 | 347 | 3.6e-129 | 462.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24078.t1 | A0A072VF94 | 99.7 | 328 | 1 | 0 | 1 | 328 | 18 | 345 | 1.0e-153 | 552.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene24078 | 0.831058 | 2.07E-55 | -1.69E-46 |
| MS.gene049350 | MS.gene24078 | 0.836121 | 1.13E-56 | -1.69E-46 |
| MS.gene049807 | MS.gene24078 | 0.879465 | 1.22E-69 | -1.69E-46 |
| MS.gene049887 | MS.gene24078 | 0.875277 | 3.50E-68 | -1.69E-46 |
| MS.gene050752 | MS.gene24078 | 0.802371 | 5.79E-49 | -1.69E-46 |
| MS.gene050838 | MS.gene24078 | 0.843225 | 1.60E-58 | -1.69E-46 |
| MS.gene051003 | MS.gene24078 | 0.810918 | 9.08E-51 | -1.69E-46 |
| MS.gene051234 | MS.gene24078 | 0.850591 | 1.54E-60 | -1.69E-46 |
| MS.gene051885 | MS.gene24078 | 0.817983 | 2.48E-52 | -1.69E-46 |
| MS.gene052072 | MS.gene24078 | 0.800709 | 1.27E-48 | -1.69E-46 |
| MS.gene052307 | MS.gene24078 | 0.83853 | 2.72E-57 | -1.69E-46 |
| MS.gene052335 | MS.gene24078 | 0.826817 | 2.20E-54 | -1.69E-46 |
| MS.gene052516 | MS.gene24078 | 0.814664 | 1.37E-51 | -1.69E-46 |
| MS.gene052609 | MS.gene24078 | 0.813243 | 2.83E-51 | -1.69E-46 |
| MS.gene053143 | MS.gene24078 | 0.818684 | 1.72E-52 | -1.69E-46 |
| MS.gene053144 | MS.gene24078 | 0.85881 | 6.38E-63 | -1.69E-46 |
| MS.gene053581 | MS.gene24078 | 0.820616 | 6.24E-53 | -1.69E-46 |
| MS.gene054403 | MS.gene24078 | 0.800332 | 1.51E-48 | -1.69E-46 |
| MS.gene054584 | MS.gene24078 | 0.822036 | 2.94E-53 | -1.69E-46 |
| MS.gene055468 | MS.gene24078 | 0.803746 | 3.01E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene24078 | 0.834572 | 2.77E-56 | -1.69E-46 |
| MS.gene056308 | MS.gene24078 | 0.813977 | 1.95E-51 | -1.69E-46 |
| MS.gene056578 | MS.gene24078 | 0.803447 | 3.47E-49 | -1.69E-46 |
| MS.gene056699 | MS.gene24078 | 0.806758 | 7.04E-50 | -1.69E-46 |
| MS.gene057102 | MS.gene24078 | 0.841433 | 4.77E-58 | -1.69E-46 |
| MS.gene058492 | MS.gene24078 | 0.810063 | 1.39E-50 | -1.69E-46 |
| MS.gene058852 | MS.gene24078 | 0.811734 | 6.04E-51 | -1.69E-46 |
| MS.gene059171 | MS.gene24078 | 0.819069 | 1.41E-52 | -1.69E-46 |
| MS.gene059227 | MS.gene24078 | 0.832267 | 1.04E-55 | -1.69E-46 |
| MS.gene059778 | MS.gene24078 | 0.806982 | 6.31E-50 | -1.69E-46 |
| MS.gene061007 | MS.gene24078 | 0.800041 | 1.74E-48 | -1.69E-46 |
| MS.gene061100 | MS.gene24078 | 0.82304 | 1.72E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene24078 | MS.gene06507 | PPI |
| MS.gene24078 | MS.gene059336 | PPI |
| MS.gene24078 | MS.gene013410 | PPI |
| MS.gene24078 | MS.gene06508 | PPI |
| MS.gene24078 | MS.gene049383 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24078.t1 | MTR_1g026590 | 99.695 | 328 | 1 | 0 | 1 | 328 | 18 | 345 | 0.0 | 657 |
| MS.gene24078.t1 | MTR_5g004620 | 79.573 | 328 | 66 | 1 | 1 | 327 | 20 | 347 | 0.0 | 510 |
| MS.gene24078.t1 | MTR_8g092190 | 52.201 | 318 | 140 | 3 | 2 | 318 | 21 | 327 | 1.00e-103 | 308 |
| MS.gene24078.t1 | MTR_3g095130 | 51.645 | 304 | 136 | 4 | 2 | 299 | 21 | 319 | 1.09e-101 | 302 |
| MS.gene24078.t1 | MTR_1g098240 | 53.642 | 302 | 131 | 4 | 2 | 299 | 21 | 317 | 1.15e-97 | 291 |
| MS.gene24078.t1 | MTR_3g095130 | 50.558 | 269 | 130 | 2 | 34 | 299 | 2 | 270 | 8.28e-88 | 265 |
| MS.gene24078.t1 | MTR_4g058860 | 37.107 | 318 | 190 | 2 | 1 | 318 | 17 | 324 | 4.53e-64 | 206 |
| MS.gene24078.t1 | MTR_2g094640 | 38.790 | 281 | 170 | 1 | 1 | 281 | 17 | 295 | 6.23e-63 | 203 |
| MS.gene24078.t1 | MTR_3g094260 | 38.710 | 279 | 169 | 1 | 13 | 291 | 29 | 305 | 2.16e-60 | 197 |
| MS.gene24078.t1 | MTR_3g094270 | 35.577 | 312 | 190 | 4 | 13 | 324 | 29 | 329 | 4.54e-56 | 186 |
| MS.gene24078.t1 | MTR_5g096310 | 31.661 | 319 | 205 | 5 | 2 | 315 | 63 | 373 | 1.23e-26 | 108 |
| MS.gene24078.t1 | MTR_2g038410 | 29.781 | 319 | 205 | 9 | 2 | 315 | 62 | 366 | 1.55e-24 | 102 |
| MS.gene24078.t1 | MTR_3g072380 | 24.603 | 252 | 188 | 2 | 65 | 315 | 88 | 338 | 6.82e-16 | 77.8 |
| MS.gene24078.t1 | MTR_1g030320 | 22.961 | 331 | 224 | 8 | 6 | 320 | 25 | 340 | 1.13e-13 | 71.2 |
| MS.gene24078.t1 | MTR_4g018760 | 26.280 | 293 | 187 | 8 | 5 | 280 | 23 | 303 | 3.71e-11 | 63.5 |
| MS.gene24078.t1 | MTR_4g101860 | 25.424 | 295 | 201 | 8 | 5 | 287 | 63 | 350 | 4.75e-11 | 63.5 |
| MS.gene24078.t1 | MTR_3g462070 | 23.051 | 295 | 210 | 5 | 5 | 288 | 20 | 308 | 5.58e-11 | 63.2 |
| MS.gene24078.t1 | MTR_3g070000 | 23.103 | 290 | 214 | 3 | 5 | 287 | 35 | 322 | 9.83e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24078.t1 | AT1G21070 | 80.428 | 327 | 64 | 0 | 1 | 327 | 21 | 347 | 0.0 | 535 |
| MS.gene24078.t1 | AT1G76670 | 80.122 | 327 | 65 | 0 | 1 | 327 | 20 | 346 | 0.0 | 527 |
| MS.gene24078.t1 | AT1G76670 | 80.122 | 327 | 65 | 0 | 1 | 327 | 20 | 346 | 0.0 | 527 |
| MS.gene24078.t1 | AT5G42420 | 78.419 | 329 | 69 | 1 | 1 | 327 | 21 | 349 | 0.0 | 519 |
| MS.gene24078.t1 | AT4G09810 | 52.632 | 304 | 133 | 4 | 2 | 299 | 21 | 319 | 1.13e-103 | 307 |
| MS.gene24078.t1 | AT1G34020 | 51.645 | 304 | 136 | 4 | 2 | 299 | 21 | 319 | 1.46e-100 | 299 |
| MS.gene24078.t1 | AT1G34020 | 51.645 | 304 | 136 | 4 | 2 | 299 | 21 | 319 | 1.46e-100 | 299 |
| MS.gene24078.t1 | AT1G34020 | 51.645 | 304 | 136 | 4 | 2 | 299 | 21 | 319 | 1.46e-100 | 299 |
| MS.gene24078.t1 | AT4G39390 | 49.346 | 306 | 150 | 3 | 2 | 304 | 22 | 325 | 2.91e-96 | 288 |
| MS.gene24078.t1 | AT4G39390 | 49.346 | 306 | 150 | 3 | 2 | 304 | 26 | 329 | 3.49e-96 | 288 |
| MS.gene24078.t1 | AT4G39390 | 49.346 | 306 | 150 | 3 | 2 | 304 | 26 | 329 | 3.49e-96 | 288 |
| MS.gene24078.t1 | AT5G42420 | 73.988 | 173 | 43 | 1 | 157 | 327 | 110 | 282 | 9.65e-89 | 267 |
| MS.gene24078.t1 | AT5G42420 | 82.022 | 89 | 16 | 0 | 1 | 89 | 21 | 109 | 3.42e-45 | 155 |
| MS.gene24078.t1 | AT4G09810 | 50.951 | 263 | 120 | 3 | 43 | 299 | 3 | 262 | 3.32e-86 | 261 |
| MS.gene24078.t1 | AT4G09810 | 55.502 | 209 | 91 | 1 | 2 | 210 | 21 | 227 | 1.97e-72 | 224 |
| MS.gene24078.t1 | AT2G30460 | 39.344 | 305 | 159 | 3 | 13 | 305 | 29 | 319 | 7.21e-66 | 211 |
| MS.gene24078.t1 | AT2G30460 | 39.344 | 305 | 159 | 3 | 13 | 305 | 29 | 319 | 7.21e-66 | 211 |
| MS.gene24078.t1 | AT1G06890 | 37.963 | 324 | 166 | 5 | 13 | 324 | 29 | 329 | 3.72e-64 | 207 |
| MS.gene24078.t1 | AT1G06890 | 37.963 | 324 | 166 | 5 | 13 | 324 | 29 | 329 | 3.90e-64 | 207 |
| MS.gene24078.t1 | AT2G28315 | 36.923 | 325 | 189 | 3 | 1 | 325 | 17 | 325 | 4.17e-64 | 206 |
| MS.gene24078.t1 | AT1G06890 | 37.963 | 324 | 166 | 5 | 13 | 324 | 29 | 329 | 5.55e-64 | 206 |
| MS.gene24078.t1 | AT1G06890 | 37.963 | 324 | 166 | 5 | 13 | 324 | 29 | 329 | 5.55e-64 | 206 |
| MS.gene24078.t1 | AT2G28315 | 39.858 | 281 | 167 | 1 | 1 | 281 | 17 | 295 | 7.95e-64 | 205 |
| MS.gene24078.t1 | AT2G30460 | 38.488 | 291 | 155 | 2 | 27 | 305 | 20 | 298 | 3.14e-62 | 201 |
| MS.gene24078.t1 | AT2G30460 | 38.488 | 291 | 155 | 2 | 27 | 305 | 20 | 298 | 3.14e-62 | 201 |
| MS.gene24078.t1 | AT2G30460 | 38.488 | 291 | 155 | 2 | 27 | 305 | 20 | 298 | 3.14e-62 | 201 |
| MS.gene24078.t1 | AT2G30460 | 38.889 | 198 | 119 | 1 | 13 | 210 | 29 | 224 | 7.25e-36 | 132 |
| MS.gene24078.t1 | AT5G55950 | 31.132 | 318 | 203 | 7 | 2 | 314 | 4 | 310 | 1.11e-31 | 121 |
| MS.gene24078.t1 | AT5G55950 | 31.132 | 318 | 203 | 7 | 2 | 314 | 64 | 370 | 2.48e-31 | 122 |
| MS.gene24078.t1 | AT5G57100 | 31.944 | 288 | 178 | 7 | 2 | 281 | 71 | 348 | 5.13e-28 | 112 |
| MS.gene24078.t1 | AT5G55950 | 29.730 | 296 | 194 | 6 | 24 | 314 | 6 | 292 | 1.11e-26 | 107 |
| MS.gene24078.t1 | AT5G57100 | 32.828 | 198 | 127 | 4 | 85 | 281 | 41 | 233 | 2.45e-21 | 92.0 |
| MS.gene24078.t1 | AT5G57100 | 30.802 | 237 | 148 | 5 | 2 | 231 | 71 | 298 | 1.44e-20 | 90.5 |
| MS.gene24078.t1 | AT5G55950 | 30.769 | 234 | 152 | 4 | 2 | 231 | 64 | 291 | 3.02e-20 | 89.7 |
| MS.gene24078.t1 | AT1G77610 | 24.590 | 244 | 176 | 3 | 65 | 303 | 82 | 322 | 1.74e-13 | 70.9 |
| MS.gene24078.t1 | AT5G57100 | 30.769 | 169 | 105 | 3 | 2 | 163 | 71 | 234 | 3.23e-13 | 69.3 |
| MS.gene24078.t1 | AT1G21870 | 24.806 | 258 | 181 | 8 | 65 | 315 | 88 | 339 | 4.07e-12 | 66.6 |
| MS.gene24078.t1 | AT4G32272 | 24.771 | 218 | 143 | 6 | 71 | 281 | 135 | 338 | 4.04e-11 | 63.5 |
| MS.gene24078.t1 | AT1G12500 | 25.914 | 301 | 202 | 9 | 5 | 292 | 69 | 361 | 4.50e-11 | 63.5 |
| MS.gene24078.t1 | AT4G32272 | 24.771 | 218 | 143 | 6 | 71 | 281 | 150 | 353 | 5.37e-11 | 63.5 |
Find 0 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAGAAAAAGAAACATT+TGG | + | 6094:5195-5214 | MS.gene24078:intron | 15.0% |
| !!! | AAAAAAAGAAGTTTGATTTA+AGG | - | 6094:5636-5655 | None:intergenic | 15.0% |
| !!! | AATAAATCTATTGATTTGTT+GGG | - | 6094:5228-5247 | None:intergenic | 15.0% |
| !!! | GAAAATGAAAATTTTAAAAC+TGG | - | 6094:4843-4862 | None:intergenic | 15.0% |
| !!! | TAATAAATCTATTGATTTGT+TGG | - | 6094:5229-5248 | None:intergenic | 15.0% |
| !! | AAAAAGAAACATTTGGTTAT+GGG | + | 6094:5202-5221 | MS.gene24078:intron | 20.0% |
| !! | AAAGGACATCTTAATATAAA+TGG | - | 6094:5141-5160 | None:intergenic | 20.0% |
| !! | AACACTTGAATATAAATAAC+AGG | - | 6094:5167-5186 | None:intergenic | 20.0% |
| !! | AATATAAATAACAGGAGAAA+AGG | - | 6094:5159-5178 | None:intergenic | 20.0% |
| !! | AATGAAATGTGAAAAATGAA+TGG | - | 6094:4153-4172 | None:intergenic | 20.0% |
| !! | ACTATATATGCATATATTGT+TGG | + | 6094:5971-5990 | MS.gene24078:intron | 20.0% |
| !! | ATGAAATGTGAAAAATGAAT+GGG | - | 6094:4152-4171 | None:intergenic | 20.0% |
| !!! | AATGAAAATTTTAAAACTGG+AGG | - | 6094:4840-4859 | None:intergenic | 20.0% |
| !!! | CATCATTTTTATTCTTTTGA+AGG | + | 6094:5349-5368 | MS.gene24078:intron | 20.0% |
| ! | AAAAAAAATCAGGTATAGCA+AGG | - | 6094:5714-5733 | None:intergenic | 25.0% |
| ! | AAAAAAATCAGGTATAGCAA+GGG | - | 6094:5713-5732 | None:intergenic | 25.0% |
| ! | AATTTAGAAATCAAACTGGT+TGG | - | 6094:5601-5620 | None:intergenic | 25.0% |
| ! | AGATTTAGAGATTAATGAGT+TGG | + | 6094:4580-4599 | MS.gene24078:intron | 25.0% |
| ! | ATGATTCTAAACCAGTAAAT+TGG | + | 6094:5449-5468 | MS.gene24078:intron | 25.0% |
| ! | CTACAAAAGAAATATTCGAT+TGG | + | 6094:5762-5781 | MS.gene24078:CDS | 25.0% |
| ! | GAAAAAGAAACATTTGGTTA+TGG | + | 6094:5201-5220 | MS.gene24078:intron | 25.0% |
| ! | GATGTAAATGTTAACTTCAA+AGG | + | 6094:5011-5030 | MS.gene24078:CDS | 25.0% |
| ! | TCTAGATTCAACACAAAAAA+AGG | - | 6094:5926-5945 | None:intergenic | 25.0% |
| ! | TGGTAATTTAGAAATCAAAC+TGG | - | 6094:5605-5624 | None:intergenic | 25.0% |
| ! | TGGTCTATGATAGAATATTA+TGG | + | 6094:4615-4634 | MS.gene24078:intron | 25.0% |
| !! | TTCAGCATCTTTTATTATCT+TGG | + | 6094:5546-5565 | MS.gene24078:intron | 25.0% |
| !! | TTTGATTTAAGGAAGAAACT+TGG | - | 6094:5625-5644 | None:intergenic | 25.0% |
| AAAAAGGTGATCACTTACAA+TGG | - | 6094:5910-5929 | None:intergenic | 30.0% | |
| AAACAGACTTCATTGTTAAC+AGG | + | 6094:5414-5433 | MS.gene24078:intron | 30.0% | |
| AAACTTCCTGTGTTATATAC+CGG | + | 6094:5662-5681 | MS.gene24078:intron | 30.0% | |
| AAATTAGGCTATTGAAGGAA+GGG | + | 6094:6314-6333 | MS.gene24078:CDS | 30.0% | |
| AACAGACTTCATTGTTAACA+GGG | + | 6094:5415-5434 | MS.gene24078:intron | 30.0% | |
| AACATTATGTGTTCTGACTT+TGG | + | 6094:6135-6154 | MS.gene24078:CDS | 30.0% | |
| AATGGTTATGCTTTCACTTT+CGG | + | 6094:4083-4102 | MS.gene24078:CDS | 30.0% | |
| ACATTATGTGTTCTGACTTT+GGG | + | 6094:6136-6155 | MS.gene24078:CDS | 30.0% | |
| AGAAGAAATTAGGCTATTGA+AGG | + | 6094:6309-6328 | MS.gene24078:CDS | 30.0% | |
| ATCAAAACTAAGCATGATTC+CGG | + | 6094:4884-4903 | MS.gene24078:CDS | 30.0% | |
| ATTACTACTACAGAATCTAC+AGG | - | 6094:4479-4498 | None:intergenic | 30.0% | |
| CAACAATGGGAAAAAAAATC+AGG | - | 6094:5724-5743 | None:intergenic | 30.0% | |
| CAATTACTTGACCAATTTAC+TGG | - | 6094:5463-5482 | None:intergenic | 30.0% | |
| CAGTAAATTGGTCAAGTAAT+TGG | + | 6094:5461-5480 | MS.gene24078:intron | 30.0% | |
| CCAAGTTCAATATCTTTCAA+CGG | - | 6094:6352-6371 | None:intergenic | 30.0% | |
| CTGAGATAGTAATCAACAAA+TGG | - | 6094:5849-5868 | None:intergenic | 30.0% | |
| TACATTACAAAACACAGCTA+AGG | - | 6094:6053-6072 | None:intergenic | 30.0% | |
| TATCATAGACCACCATATTT+CGG | - | 6094:4607-4626 | None:intergenic | 30.0% | |
| TCTTTACAGCAAATTGTAAG+TGG | + | 6094:5068-5087 | MS.gene24078:intron | 30.0% | |
| TTACTACTACAGAATCTACA+GGG | - | 6094:4478-4497 | None:intergenic | 30.0% | |
| ! | AGTGTCTTTTAAATTTCTGC+AGG | + | 6094:6006-6025 | MS.gene24078:intron | 30.0% |
| ! | GAACACATAATGTTTTCATG+TGG | - | 6094:6129-6148 | None:intergenic | 30.0% |
| ! | GATCTAAAATGAACATTGAC+TGG | - | 6094:5394-5413 | None:intergenic | 30.0% |
| ! | TTTGTTGATTACTATCTCAG+TGG | + | 6094:5849-5868 | MS.gene24078:CDS | 30.0% |
| AAACAGCTTATGTCCAACAA+TGG | + | 6094:4065-4084 | MS.gene24078:CDS | 35.0% | |
| AATTAGGCTATTGAAGGAAG+GGG | + | 6094:6315-6334 | MS.gene24078:CDS | 35.0% | |
| ACAGACTTCATTGTTAACAG+GGG | + | 6094:5416-5435 | MS.gene24078:intron | 35.0% | |
| ACCAGAAGACATCTTAAAGT+TGG | - | 6094:5886-5905 | None:intergenic | 35.0% | |
| AGATGAAAAGCAAGCATACT+TGG | - | 6094:4410-4429 | None:intergenic | 35.0% | |
| ATAAGAGAGAGAGCTTGAAT+AGG | - | 6094:5816-5835 | None:intergenic | 35.0% | |
| ATGCTTAGAAGCAGAATAAC+CGG | - | 6094:4292-4311 | None:intergenic | 35.0% | |
| ATTCGCCATGATAATTCCAA+CGG | - | 6094:4045-4064 | None:intergenic | 35.0% | |
| CATTATGTGTTCTGACTTTG+GGG | + | 6094:6137-6156 | MS.gene24078:CDS | 35.0% | |
| CCAACAAATAGCATGATTTC+CGG | - | 6094:5684-5703 | None:intergenic | 35.0% | |
| CCATTGTTGTGATAGTCAAT+CGG | + | 6094:5735-5754 | MS.gene24078:intron | 35.0% | |
| CCGTTGAAAGATATTGAACT+TGG | + | 6094:6349-6368 | MS.gene24078:CDS | 35.0% | |
| CGATTGACTATCACAACAAT+GGG | - | 6094:5737-5756 | None:intergenic | 35.0% | |
| CGGCATGGTAATTTATAGTT+GGG | + | 6094:6222-6241 | MS.gene24078:CDS | 35.0% | |
| CTCACTTTCAAGAACATCAT+GGG | + | 6094:6181-6200 | MS.gene24078:CDS | 35.0% | |
| GAAAGATATTGAACTTGGTC+AGG | + | 6094:6354-6373 | MS.gene24078:CDS | 35.0% | |
| GAAATTAGGCTATTGAAGGA+AGG | + | 6094:6313-6332 | MS.gene24078:CDS | 35.0% | |
| GCCTAACAGAAGAAGAAATT+AGG | + | 6094:6299-6318 | MS.gene24078:CDS | 35.0% | |
| GCCTAATTTCTTCTTCTGTT+AGG | - | 6094:6303-6322 | None:intergenic | 35.0% | |
| GCTCTCTCTCTTATTATTCT+TGG | + | 6094:5822-5841 | MS.gene24078:CDS | 35.0% | |
| GTGAAAAATGAATGGGATCT+GGG | - | 6094:4145-4164 | None:intergenic | 35.0% | |
| GTTGCCAATATATCTATCAC+CGG | + | 6094:4345-4364 | MS.gene24078:CDS | 35.0% | |
| GTTTCTCTTATAGATTTCCC+AGG | - | 6094:4551-4570 | None:intergenic | 35.0% | |
| TAAATTCCATATTGCCCACA+TGG | - | 6094:5115-5134 | None:intergenic | 35.0% | |
| TACAGACACATCTTTCATCT+GGG | + | 6094:5247-5266 | MS.gene24078:intron | 35.0% | |
| TCGGCATGGTAATTTATAGT+TGG | + | 6094:6221-6240 | MS.gene24078:CDS | 35.0% | |
| TGATTTCCGGTATATAACAC+AGG | - | 6094:5671-5690 | None:intergenic | 35.0% | |
| TGTGAAAAATGAATGGGATC+TGG | - | 6094:4146-4165 | None:intergenic | 35.0% | |
| TTACAGACACATCTTTCATC+TGG | + | 6094:5246-5265 | MS.gene24078:intron | 35.0% | |
| TTCTAAGCATGTTCCTTTGT+GGG | + | 6094:4302-4321 | MS.gene24078:CDS | 35.0% | |
| TTGAATTGAAGATGAGTGCT+AGG | + | 6094:5293-5312 | MS.gene24078:intron | 35.0% | |
| TTGCCAATATATCTATCACC+GGG | + | 6094:4346-4365 | MS.gene24078:CDS | 35.0% | |
| TTTCAAGAACATCATGGGAA+TGG | + | 6094:6186-6205 | MS.gene24078:CDS | 35.0% | |
| ! | AGTGAAAGCATAACCATTGT+TGG | - | 6094:4081-4100 | None:intergenic | 35.0% |
| ! | TAATGAGTTGGACCGAAATA+TGG | + | 6094:4592-4611 | MS.gene24078:intron | 35.0% |
| !! | ACCAACTTTAAGATGTCTTC+TGG | + | 6094:5882-5901 | MS.gene24078:CDS | 35.0% |
| !!! | TTAGGCTGTTTTTCGAATGA+GGG | - | 6094:6285-6304 | None:intergenic | 35.0% |
| AAAACTAAGCATGATTCCGG+TGG | + | 6094:4887-4906 | MS.gene24078:CDS | 40.0% | |
| AACCAAATAAGCTCCCACAA+AGG | - | 6094:4318-4337 | None:intergenic | 40.0% | |
| ATGGTTGTGGTTATTGGTGT+TGG | + | 6094:4972-4991 | MS.gene24078:CDS | 40.0% | |
| CATCCCGGTGATAGATATAT+TGG | - | 6094:4352-4371 | None:intergenic | 40.0% | |
| CCGATTGACTATCACAACAA+TGG | - | 6094:5738-5757 | None:intergenic | 40.0% | |
| CTTCTAAGCATGTTCCTTTG+TGG | + | 6094:4301-4320 | MS.gene24078:CDS | 40.0% | |
| GAAAGTGAAAACACGAGAGT+AGG | - | 6094:4806-4825 | None:intergenic | 40.0% | |
| GAGTTCCGTTGGAATTATCA+TGG | + | 6094:4037-4056 | MS.gene24078:CDS | 40.0% | |
| GCTCACTTTCAAGAACATCA+TGG | + | 6094:6180-6199 | MS.gene24078:CDS | 40.0% | |
| GGTAATTTATAGTTGGGCTG+TGG | + | 6094:6228-6247 | MS.gene24078:CDS | 40.0% | |
| GGTGCAGATCTAATGTAATG+AGG | - | 6094:4124-4143 | None:intergenic | 40.0% | |
| TCAATCCTTAACCCACTAAC+CGG | - | 6094:4666-4685 | None:intergenic | 40.0% | |
| TCACAGCAAACACTACTCAA+GGG | + | 6094:4932-4951 | MS.gene24078:CDS | 40.0% | |
| TGATGATACAACTGCTACAC+AGG | - | 6094:5048-5067 | None:intergenic | 40.0% | |
| TTAAGCCTCATGCTCAATTC+CGG | + | 6094:4375-4394 | MS.gene24078:CDS | 40.0% | |
| TTCACAGCAAACACTACTCA+AGG | + | 6094:4931-4950 | MS.gene24078:CDS | 40.0% | |
| TTCCTTTGTGGGAGCTTATT+TGG | + | 6094:4313-4332 | MS.gene24078:CDS | 40.0% | |
| ! | CCGGAAATCATGCTATTTGT+TGG | + | 6094:5681-5700 | MS.gene24078:intron | 40.0% |
| ! | TTTGCTGTAACTGCTCTTGT+CGG | + | 6094:4249-4268 | MS.gene24078:CDS | 40.0% |
| ! | TTTTCATGTGGCCTAAAACC+TGG | - | 6094:6117-6136 | None:intergenic | 40.0% |
| !! | CTTCCTTTTAGAGACATGTG+CGG | + | 6094:4733-4752 | MS.gene24078:intron | 40.0% |
| !! | TTGAGTAGTGTTTGCTGTGA+AGG | - | 6094:4932-4951 | None:intergenic | 40.0% |
| !!! | GTTAGGCTGTTTTTCGAATG+AGG | - | 6094:6286-6305 | None:intergenic | 40.0% |
| AATGTGTCTGTTCCACCATG+TGG | + | 6094:5097-5116 | MS.gene24078:intron | 45.0% | |
| ATGAACGTTGTGAGTTCCGT+TGG | + | 6094:4026-4045 | MS.gene24078:CDS | 45.0% | |
| ATGTGTCTGTTCCACCATGT+GGG | + | 6094:5098-5117 | MS.gene24078:intron | 45.0% | |
| ATTCCATATTGCCCACATGG+TGG | - | 6094:5112-5131 | None:intergenic | 45.0% | |
| CATGAGGCTTAAGTTCATCC+CGG | - | 6094:4367-4386 | None:intergenic | 45.0% | |
| CATTCCATCACACAAACCAC+CGG | - | 6094:4906-4925 | None:intergenic | 45.0% | |
| CTACCGCACATGTCTCTAAA+AGG | - | 6094:4739-4758 | None:intergenic | 45.0% | |
| GCATACTTGGTAGAATCCAC+CGG | - | 6094:4397-4416 | None:intergenic | 45.0% | |
| GGAATGGTTCTTGCAGTTGT+CGG | + | 6094:6202-6221 | MS.gene24078:CDS | 45.0% | |
| TAAGCCAGTACCTCTGCATT+GGG | + | 6094:6071-6090 | MS.gene24078:CDS | 45.0% | |
| TACCAGCGACTACTTTGACT+GGG | + | 6094:4220-4239 | MS.gene24078:intron | 45.0% | |
| TCGGTCATGGTTGTGGTTAT+TGG | + | 6094:4966-4985 | MS.gene24078:CDS | 45.0% | |
| TGTTCATCAGCACTATTCGC+TGG | - | 6094:5494-5513 | None:intergenic | 45.0% | |
| TTACCAGCGACTACTTTGAC+TGG | + | 6094:4219-4238 | MS.gene24078:intron | 45.0% | |
| ! | AGATTTCCCAGGTTTTCCAC+TGG | - | 6094:4540-4559 | None:intergenic | 45.0% |
| ! | CTCAAGGGAAGTGAAAGTGT+CGG | + | 6094:4947-4966 | MS.gene24078:CDS | 45.0% |
| ! | GCAGTTTCCTTCCAGGTTTT+AGG | + | 6094:6103-6122 | MS.gene24078:CDS | 45.0% |
| ! | TATGTGTTCTGACTTTGGGG+TGG | + | 6094:6140-6159 | MS.gene24078:CDS | 45.0% |
| ! | TGAGTTGGACCGAAATATGG+TGG | + | 6094:4595-4614 | MS.gene24078:intron | 45.0% |
| AACCCAGTCAAAGTAGTCGC+TGG | - | 6094:4225-4244 | None:intergenic | 50.0% | |
| ACTACAGCCAGTGGAAAACC+TGG | + | 6094:4530-4549 | MS.gene24078:intron | 50.0% | |
| AGTCAGATCACTACAGCCAG+TGG | + | 6094:4521-4540 | MS.gene24078:intron | 50.0% | |
| ATCCACCGGAATTGAGCATG+AGG | - | 6094:4383-4402 | None:intergenic | 50.0% | |
| CATGTGGCCTAAAACCTGGA+AGG | - | 6094:6113-6132 | None:intergenic | 50.0% | |
| CTACAGCCAGTGGAAAACCT+GGG | + | 6094:4531-4550 | MS.gene24078:intron | 50.0% | |
| CTTAACCCACTAACCGGAGT+CGG | - | 6094:4660-4679 | None:intergenic | 50.0% | |
| CTTCTCAGCAGTTTCCTTCC+AGG | + | 6094:6096-6115 | MS.gene24078:CDS | 50.0% | |
| GGACTCGTCTCAAATGCTAC+CGG | + | 6094:4270-4289 | MS.gene24078:CDS | 50.0% | |
| GTAAGCCAGTACCTCTGCAT+TGG | + | 6094:6070-6089 | MS.gene24078:CDS | 50.0% | |
| GTTCCACCATGTGGGCAATA+TGG | + | 6094:5106-5125 | MS.gene24078:intron | 50.0% | |
| TGAGGGAGAGTCTTCGCATT+TGG | - | 6094:6268-6287 | None:intergenic | 50.0% | |
| ! | CGGTGGTTTGTGTGATGGAA+TGG | + | 6094:4904-4923 | MS.gene24078:CDS | 50.0% |
| ! | GATTCCGGTGGTTTGTGTGA+TGG | + | 6094:4899-4918 | MS.gene24078:CDS | 50.0% |
| ! | TTGATCCATGTAGCCGACTC+CGG | + | 6094:4644-4663 | MS.gene24078:intron | 50.0% |
| !! | GAAAGTGTCGGTCATGGTTG+TGG | + | 6094:4959-4978 | MS.gene24078:CDS | 50.0% |
| !! | GGAAGTGAAAGTGTCGGTCA+TGG | + | 6094:4953-4972 | MS.gene24078:CDS | 50.0% |
| ACTAACCGGAGTCGGCTACA+TGG | - | 6094:4652-4671 | None:intergenic | 55.0% | |
| AGCCTCATGCTCAATTCCGG+TGG | + | 6094:4378-4397 | MS.gene24078:CDS | 55.0% | |
| GGTTCTTGCAGTTGTCGGCA+TGG | + | 6094:6207-6226 | MS.gene24078:CDS | 55.0% | |
| ! | ATGTAGCCGACTCCGGTTAG+TGG | + | 6094:4651-4670 | MS.gene24078:intron | 55.0% |
| ! | TGTAGCCGACTCCGGTTAGT+GGG | + | 6094:4652-4671 | MS.gene24078:intron | 55.0% |
| !! | CGACTCCGGTTAGTGGGTTA+AGG | + | 6094:4658-4677 | MS.gene24078:intron | 55.0% |
| ! | AGCGCCCAATGCAGAGGTAC+TGG | - | 6094:6078-6097 | None:intergenic | 60.0% |
| !! | CTGAGAAGCGCCCAATGCAG+AGG | - | 6094:6084-6103 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 6094 | gene | 4026 | 6387 | 4026 | ID=MS.gene24078 |
| 6094 | mRNA | 4026 | 6387 | 4026 | ID=MS.gene24078.t1;Parent=MS.gene24078 |
| 6094 | exon | 4026 | 4104 | 4026 | ID=MS.gene24078.t1.exon1;Parent=MS.gene24078.t1 |
| 6094 | CDS | 4026 | 4104 | 4026 | ID=cds.MS.gene24078.t1;Parent=MS.gene24078.t1 |
| 6094 | exon | 4226 | 4410 | 4226 | ID=MS.gene24078.t1.exon2;Parent=MS.gene24078.t1 |
| 6094 | CDS | 4226 | 4410 | 4226 | ID=cds.MS.gene24078.t1;Parent=MS.gene24078.t1 |
| 6094 | exon | 4882 | 5082 | 4882 | ID=MS.gene24078.t1.exon3;Parent=MS.gene24078.t1 |
| 6094 | CDS | 4882 | 5082 | 4882 | ID=cds.MS.gene24078.t1;Parent=MS.gene24078.t1 |
| 6094 | exon | 5750 | 5911 | 5750 | ID=MS.gene24078.t1.exon4;Parent=MS.gene24078.t1 |
| 6094 | CDS | 5750 | 5911 | 5750 | ID=cds.MS.gene24078.t1;Parent=MS.gene24078.t1 |
| 6094 | exon | 6028 | 6387 | 6028 | ID=MS.gene24078.t1.exon5;Parent=MS.gene24078.t1 |
| 6094 | CDS | 6028 | 6387 | 6028 | ID=cds.MS.gene24078.t1;Parent=MS.gene24078.t1 |
| Gene Sequence |
| Protein sequence |
