AlfalfaGEDB | MS.gene88927

M. sativa cultivar XinJiangDaYe / MS.gene88927

KEGG: -
GO: -
PFAM: PF03151.19

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88927.t1	XP_013466230.1	99.4	345	2	0	1	345	1	345	2.10E-163	585.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88927.t1	Q9LPU2	72.9	343	93	0	2	344	5	347	9.4e-136	484.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88927.t1	A0A072VF94	99.4	345	2	0	1	345	1	345	1.5e-163	585.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene88927	0.855261	7.11E-62	-1.69E-46
MS.gene049227	MS.gene88927	0.801699	7.96E-49	-1.69E-46
MS.gene049350	MS.gene88927	0.858062	1.07E-62	-1.69E-46
MS.gene049368	MS.gene88927	0.811268	7.62E-51	-1.69E-46
MS.gene049411	MS.gene88927	0.826909	2.09E-54	-1.69E-46
MS.gene049711	MS.gene88927	0.806722	7.17E-50	-1.69E-46
MS.gene049807	MS.gene88927	0.900174	9.53E-78	-1.69E-46
MS.gene049887	MS.gene88927	0.892645	1.31E-74	-1.69E-46
MS.gene050085	MS.gene88927	0.808137	3.59E-50	-1.69E-46
MS.gene050359	MS.gene88927	0.832846	7.49E-56	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene013410	MS.gene88927	PPI
MS.gene049383	MS.gene88927	PPI
MS.gene059336	MS.gene88927	PPI
MS.gene06508	MS.gene88927	PPI
MS.gene88927	MS.gene06507	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88927.t1	MTR_1g026590	99.420	345	2	0	1	345	1	345	0.0	691
MS.gene88927.t1	MTR_5g004620	79.179	341	70	1	5	344	7	347	0.0	531
MS.gene88927.t1	MTR_8g092190	51.692	325	145	3	12	335	14	327	6.27e-106	314
MS.gene88927.t1	MTR_3g095130	50.156	321	147	5	2	316	6	319	7.44e-104	308
MS.gene88927.t1	MTR_1g098240	52.665	319	140	5	2	316	6	317	5.09e-101	301
MS.gene88927.t1	MTR_3g095130	50.368	272	126	3	51	316	2	270	2.02e-88	267
MS.gene88927.t1	MTR_4g058860	36.446	332	201	2	4	335	3	324	5.16e-66	212
MS.gene88927.t1	MTR_2g094640	39.298	285	171	1	14	298	13	295	7.65e-65	209
MS.gene88927.t1	MTR_3g094260	39.068	279	168	1	30	308	29	305	2.41e-61	200
MS.gene88927.t1	MTR_3g094270	35.897	312	189	4	30	341	29	329	7.72e-57	188

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88927.t1	AT1G21070	79.883	343	69	0	2	344	5	347	0.0	559
MS.gene88927.t1	AT1G76670	79.883	343	68	1	2	344	5	346	0.0	548
MS.gene88927.t1	AT1G76670	79.883	343	68	1	2	344	5	346	0.0	548
MS.gene88927.t1	AT5G42420	77.746	346	74	2	2	344	4	349	0.0	540
MS.gene88927.t1	AT4G09810	51.713	321	142	5	2	316	6	319	3.32e-107	317
MS.gene88927.t1	AT1G34020	51.792	307	137	4	16	316	18	319	1.75e-102	305
MS.gene88927.t1	AT1G34020	51.792	307	137	4	16	316	18	319	1.75e-102	305
MS.gene88927.t1	AT1G34020	51.792	307	137	4	16	316	18	319	1.75e-102	305
MS.gene88927.t1	AT4G39390	48.137	322	162	3	3	321	6	325	5.78e-99	296
MS.gene88927.t1	AT4G39390	48.137	322	162	3	3	321	10	329	7.58e-99	296

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Find 0 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAGGTGATCACTTACAA+TGG	-	6098:73377-73396	None:intergenic	30.0%
AAACAGACTTCATTGTTAAC+AGG	+	6098:72880-72899	MS.gene88927:intron	30.0%
AAATTAGGCTATTGAAGGAA+GGG	+	6098:73781-73800	MS.gene88927:CDS	30.0%
AACAGACTTCATTGTTAACA+GGG	+	6098:72881-72900	MS.gene88927:intron	30.0%
AATGGTTATGCTTTCACTTT+CGG	+	6098:71553-71572	MS.gene88927:CDS	30.0%
AGAAGAAATTAGGCTATTGA+AGG	+	6098:73776-73795	MS.gene88927:CDS	30.0%
ATCAAAACTAAGCATGATTC+CGG	+	6098:72350-72369	MS.gene88927:CDS	30.0%
ATTAGCCATGATAATTCCAA+CGG	-	6098:71515-71534	None:intergenic	30.0%
CAACAATGGGAAAAAAAATC+AGG	-	6098:73191-73210	None:intergenic	30.0%
CAATTACTTGACCAATTTAC+TGG	-	6098:72929-72948	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
6098	gene	71445	73854	71445	ID=MS.gene88927
6098	mRNA	71445	73854	71445	ID=MS.gene88927.t1;Parent=MS.gene88927
6098	exon	71445	71574	71445	ID=MS.gene88927.t1.exon1;Parent=MS.gene88927.t1
6098	CDS	71445	71574	71445	ID=cds.MS.gene88927.t1;Parent=MS.gene88927.t1
6098	exon	71695	71879	71695	ID=MS.gene88927.t1.exon2;Parent=MS.gene88927.t1
6098	CDS	71695	71879	71695	ID=cds.MS.gene88927.t1;Parent=MS.gene88927.t1
6098	exon	72348	72548	72348	ID=MS.gene88927.t1.exon3;Parent=MS.gene88927.t1
6098	CDS	72348	72548	72348	ID=cds.MS.gene88927.t1;Parent=MS.gene88927.t1
6098	exon	73217	73378	73217	ID=MS.gene88927.t1.exon4;Parent=MS.gene88927.t1
6098	CDS	73217	73378	73217	ID=cds.MS.gene88927.t1;Parent=MS.gene88927.t1
6098	exon	73495	73854	73495	ID=MS.gene88927.t1.exon5;Parent=MS.gene88927.t1
6098	CDS	73495	73854	73495	ID=cds.MS.gene88927.t1;Parent=MS.gene88927.t1

Gene Sequence

>MS.gene88927

ATGGAGAGTGAAAAGAAATCGTCAGCAATATCGAACTTTGGAGCATGGGGTATGAACGTTGTGAGTTCCGTTGGAATTATCATGGCTAATAAACAGCTTATGTCCAACAATGGTTATGCTTTCACTTTCGGTTAGTAGATAGATCTCCTCATTACATTAGATCTGCACCCAGATCCCATTCATTTTTCACATTTCATTACTTTACTTTTATTGATTGATGATTGATTTATTGATTATATTGTTTTACCAGCGACTACTTTGACTGGGTTTCACTTTGCTGTAACTGCTCTTGTCGGACTCGTCTCAAATGCTACCGGTTATTCTGCTTCTAAGCATGTTCCTTTGTGGGAGCTTATTTGGTTCTCTGCTGTTGCCAATATATCTATCACCGGGATGAACTTAAGCCTCATGCTCAATTCCGTTGGATTCTACCAAGTATGCTTGCTTTTCATCTTTACTCTTTCAACTTCATTCAATTTTCAAGATGTTAGAGAGAAAACCCTGTAGATTCTGTAGTAATGACAGTAGATCAGATGAAACATAGTCAGATCACTACAGCCAGTGGAAAACCTGGGAAATCTATAAGAGAAACTATTAAAAAAGATTTAGAGATTAATGAGTTGGACCGAAATATGGTGGTCTATGATAGAATATTATGGCATAATTTGATCCATGTAGCCGACTCCGGTTAGTGGGTTAAGGATTGATTGATTGATTGTCTGCATCTTGTAATAATTTCAAATTATGCTCAACTCTTCCTTTTAGAGACATGTGCGGTAGTTATTATAATTACATCTCATGTGCTCTAACTTTTAAATGAGCAGCCTACTCTCGAGTTGTCACTTTCAATCTTCATTTCCTCCAGTTTTAAAATTTTCATTTTCTCATCGTGTATGTGAACAGATATCAAAACTAAGCATGATTCCGGTGGTTTGTGTGATGGAATGGATCCTTCACAGCAAACACTACTCAAGGGAAGTGAAAGTGTCGGTCATGGTTGTGGTTATTGGTGTTGGTGTTTGCACTGTAACTGATGTAAATGTTAACTTCAAAGGTTTTGTGTGCGCCTGTGTAGCAGTTGTATCATCATCTTTACAGCAAATTGTAAGTGGTATATAAATGTGTCTGTTCCACCATGTGGGCAATATGGAATTTATCTCCATTTATATTAAGATGTCCTTTTCTCCTGTTATTTATATTCAAGTGTTGTACTACGATAATAGAAAAAGAAACATTTGGTTATGGGCCCAACAAATCAATAGATTTATTACAGACACATCTTTCATCTGGGATTTTTTAATTCTTTTGTACATTTTGAATTGAAGATGAGTGCTAGGTGAAACTTGCATAGACGTAGTATCATGAGTGAGCATCATTTTTATTCTTTTGAAGGTTTTTTAACTTGTACTTTGCCAGTCAATGTTCATTTTAGATCAAACAGACTTCATTGTTAACAGGGGAGTAGAAAACATGATTCTAAACCAGTAAATTGGTCAAGTAATTGGTTCAAAACCAGCGAATAGTGCTGATGAACACTGTTGTTTTTCATTTTTTTTATCTTTTTTTTTTTCAGCATCTTTTATTATCTTGGTAATCATTTTAATTTGAATTTCATAATAACCAACCAGTTTGATTTCTAAATTACCAAGTTTCTTCCTTAAATCAAACTTCTTTTTTTTACAAGAAACTTCCTGTGTTCTATACCGGAAATCATGCTATTTGTTGGATTGATCCCTTGCTATACCTGATTTTTTTTCCCATTGTTGTGATAGTCAATCGGTTCTCTACAAAAGAAATATTCGATTGGATCTTTTGAACTGCTGAGTAAGACTGCTCCTATTCAAGCTCTCTCTCTTATTATTCTTGGTCCATTTGTTGATTACTATCTCAGTGGCAAGTTGATAACCAACTTTAAGATGTCTTCTGGTGCCATTGTAAGTGATCACCTTTTTTTGTGTTGAATCTAGATAGTTTCGCTTTGTATTTGTTGTTAACTATATATGCATATATTGTTGGATTGTTTATTAAAGTGTCTTTTAAATTTCTGCAGGTTTTCATTCTTCTTTCATGCACCTTAGCTGTGTTTTGTAATGTAAGCCAGTACCTCTGCATTGGGCGCTTCTCAGCAGTTTCCTTCCAGGTTTTAGGCCACATGAAAACATTTTGTGTTCTGACTTTGGGGTGGCTGTTATTCGATTCAGAGCTCACTTTCAAGAACATCATGGGAATGGTTCTTGCAGTTGTCGGCATGGTAATTTATAGTTGGGCTGTGGAGCTTGAAAAGCAGCCAAATGCGAAGACTCTCCCTCATTCGAAAAACAGCCTAACAGAAGAAGAAATTAGGCTATTGAAGGAAGGGGTAGAAAATAGTCCGTTGAAAGATATTGAACTTGGTCAGGCTAAAGTTTAG

Protein sequence

>MS.gene88927.t1

MESEKKSSAISNFGAWGMNVVSSVGIIMANKQLMSNNGYAFTFATTLTGFHFAVTALVGLVSNATGYSASKHVPLWELIWFSAVANISITGMNLSLMLNSVGFYQISKLSMIPVVCVMEWILHSKHYSREVKVSVMVVVIGVGVCTVTDVNVNFKGFVCACVAVVSSSLQQISIGSLQKKYSIGSFELLSKTAPIQALSLIILGPFVDYYLSGKLITNFKMSSGAIVFILLSCTLAVFCNVSQYLCIGRFSAVSFQVLGHMKTFCVLTLGWLLFDSELTFKNIMGMVLAVVGMVIYSWAVELEKQPNAKTLPHSKNSLTEEEIRLLKEGVENSPLKDIELGQAKV