Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88927.t1 | XP_013466230.1 | 99.4 | 345 | 2 | 0 | 1 | 345 | 1 | 345 | 2.10E-163 | 585.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88927.t1 | Q9LPU2 | 72.9 | 343 | 93 | 0 | 2 | 344 | 5 | 347 | 9.4e-136 | 484.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88927.t1 | A0A072VF94 | 99.4 | 345 | 2 | 0 | 1 | 345 | 1 | 345 | 1.5e-163 | 585.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene88927 | 0.855261 | 7.11E-62 | -1.69E-46 |
| MS.gene049227 | MS.gene88927 | 0.801699 | 7.96E-49 | -1.69E-46 |
| MS.gene049350 | MS.gene88927 | 0.858062 | 1.07E-62 | -1.69E-46 |
| MS.gene049368 | MS.gene88927 | 0.811268 | 7.62E-51 | -1.69E-46 |
| MS.gene049411 | MS.gene88927 | 0.826909 | 2.09E-54 | -1.69E-46 |
| MS.gene049711 | MS.gene88927 | 0.806722 | 7.17E-50 | -1.69E-46 |
| MS.gene049807 | MS.gene88927 | 0.900174 | 9.53E-78 | -1.69E-46 |
| MS.gene049887 | MS.gene88927 | 0.892645 | 1.31E-74 | -1.69E-46 |
| MS.gene050085 | MS.gene88927 | 0.808137 | 3.59E-50 | -1.69E-46 |
| MS.gene050359 | MS.gene88927 | 0.832846 | 7.49E-56 | -1.69E-46 |
| MS.gene050414 | MS.gene88927 | 0.824048 | 9.97E-54 | -1.69E-46 |
| MS.gene050551 | MS.gene88927 | 0.829611 | 4.67E-55 | -1.69E-46 |
| MS.gene050646 | MS.gene88927 | 0.817065 | 4.00E-52 | -1.69E-46 |
| MS.gene050689 | MS.gene88927 | 0.850704 | 1.43E-60 | -1.69E-46 |
| MS.gene050752 | MS.gene88927 | 0.840567 | 8.05E-58 | -1.69E-46 |
| MS.gene050807 | MS.gene88927 | 0.801784 | 7.65E-49 | -1.69E-46 |
| MS.gene050838 | MS.gene88927 | 0.881064 | 3.27E-70 | -1.69E-46 |
| MS.gene050901 | MS.gene88927 | 0.806404 | 8.36E-50 | -1.69E-46 |
| MS.gene050945 | MS.gene88927 | 0.829143 | 6.07E-55 | -1.69E-46 |
| MS.gene050955 | MS.gene88927 | 0.816804 | 4.58E-52 | -1.69E-46 |
| MS.gene051003 | MS.gene88927 | 0.844991 | 5.36E-59 | -1.69E-46 |
| MS.gene051029 | MS.gene88927 | 0.818833 | 1.59E-52 | -1.69E-46 |
| MS.gene051043 | MS.gene88927 | 0.809977 | 1.45E-50 | -1.69E-46 |
| MS.gene051102 | MS.gene88927 | 0.827376 | 1.62E-54 | -1.69E-46 |
| MS.gene051233 | MS.gene88927 | 0.828915 | 6.89E-55 | -1.69E-46 |
| MS.gene051234 | MS.gene88927 | 0.906977 | 8.33E-81 | -1.69E-46 |
| MS.gene051343 | MS.gene88927 | 0.852874 | 3.47E-61 | -1.69E-46 |
| MS.gene051381 | MS.gene88927 | 0.830613 | 2.66E-55 | -1.69E-46 |
| MS.gene051450 | MS.gene88927 | 0.803482 | 3.41E-49 | -1.69E-46 |
| MS.gene051642 | MS.gene88927 | 0.845694 | 3.46E-59 | -1.69E-46 |
| MS.gene051724 | MS.gene88927 | 0.825058 | 5.77E-54 | -1.69E-46 |
| MS.gene051852 | MS.gene88927 | 0.819368 | 1.21E-52 | -1.69E-46 |
| MS.gene051885 | MS.gene88927 | 0.849099 | 4.02E-60 | -1.69E-46 |
| MS.gene051902 | MS.gene88927 | 0.811867 | 5.65E-51 | -1.69E-46 |
| MS.gene052072 | MS.gene88927 | 0.8575 | 1.56E-62 | -1.69E-46 |
| MS.gene052133 | MS.gene88927 | 0.802096 | 6.60E-49 | -1.69E-46 |
| MS.gene052155 | MS.gene88927 | -0.812176 | 4.84E-51 | -1.69E-46 |
| MS.gene052242 | MS.gene88927 | -0.834912 | 2.28E-56 | -1.69E-46 |
| MS.gene052307 | MS.gene88927 | 0.883124 | 5.85E-71 | -1.69E-46 |
| MS.gene052335 | MS.gene88927 | 0.874384 | 7.04E-68 | -1.69E-46 |
| MS.gene052342 | MS.gene88927 | 0.8045 | 2.10E-49 | -1.69E-46 |
| MS.gene052397 | MS.gene88927 | 0.821902 | 3.15E-53 | -1.69E-46 |
| MS.gene052463 | MS.gene88927 | 0.814627 | 1.40E-51 | -1.69E-46 |
| MS.gene052514 | MS.gene88927 | 0.818267 | 2.14E-52 | -1.69E-46 |
| MS.gene052516 | MS.gene88927 | 0.847097 | 1.43E-59 | -1.69E-46 |
| MS.gene052533 | MS.gene88927 | 0.812945 | 3.28E-51 | -1.69E-46 |
| MS.gene052609 | MS.gene88927 | 0.890816 | 6.99E-74 | -1.69E-46 |
| MS.gene052732 | MS.gene88927 | 0.806971 | 6.35E-50 | -1.69E-46 |
| MS.gene052932 | MS.gene88927 | 0.825511 | 4.50E-54 | -1.69E-46 |
| MS.gene053058 | MS.gene88927 | 0.814397 | 1.57E-51 | -1.69E-46 |
| MS.gene053079 | MS.gene88927 | 0.822953 | 1.80E-53 | -1.69E-46 |
| MS.gene053122 | MS.gene88927 | 0.803525 | 3.34E-49 | -1.69E-46 |
| MS.gene053143 | MS.gene88927 | 0.901624 | 2.22E-78 | -1.69E-46 |
| MS.gene053144 | MS.gene88927 | 0.864452 | 1.20E-64 | -1.69E-46 |
| MS.gene053581 | MS.gene88927 | 0.850451 | 1.68E-60 | -1.69E-46 |
| MS.gene05364 | MS.gene88927 | 0.818848 | 1.58E-52 | -1.69E-46 |
| MS.gene054004 | MS.gene88927 | 0.836009 | 1.20E-56 | -1.69E-46 |
| MS.gene054178 | MS.gene88927 | 0.813764 | 2.17E-51 | -1.69E-46 |
| MS.gene054403 | MS.gene88927 | 0.838787 | 2.34E-57 | -1.69E-46 |
| MS.gene054554 | MS.gene88927 | 0.804376 | 2.23E-49 | -1.69E-46 |
| MS.gene054584 | MS.gene88927 | 0.846963 | 1.56E-59 | -1.69E-46 |
| MS.gene054585 | MS.gene88927 | 0.805982 | 1.03E-49 | -1.69E-46 |
| MS.gene054709 | MS.gene88927 | 0.824726 | 6.90E-54 | -1.69E-46 |
| MS.gene054824 | MS.gene88927 | 0.846518 | 2.07E-59 | -1.69E-46 |
| MS.gene055221 | MS.gene88927 | 0.80511 | 1.56E-49 | -1.69E-46 |
| MS.gene055311 | MS.gene88927 | 0.814547 | 1.46E-51 | -1.69E-46 |
| MS.gene055313 | MS.gene88927 | 0.807912 | 4.01E-50 | -1.69E-46 |
| MS.gene055314 | MS.gene88927 | 0.801789 | 7.63E-49 | -1.69E-46 |
| MS.gene055465 | MS.gene88927 | 0.815833 | 7.55E-52 | -1.69E-46 |
| MS.gene055468 | MS.gene88927 | 0.817557 | 3.10E-52 | -1.69E-46 |
| MS.gene055469 | MS.gene88927 | 0.849318 | 3.49E-60 | -1.69E-46 |
| MS.gene055513 | MS.gene88927 | 0.865322 | 6.42E-65 | -1.69E-46 |
| MS.gene055537 | MS.gene88927 | 0.800468 | 1.42E-48 | -1.69E-46 |
| MS.gene055580 | MS.gene88927 | -0.815273 | 1.01E-51 | -1.69E-46 |
| MS.gene055891 | MS.gene88927 | 0.826732 | 2.31E-54 | -1.69E-46 |
| MS.gene055975 | MS.gene88927 | 0.825264 | 5.15E-54 | -1.69E-46 |
| MS.gene056005 | MS.gene88927 | 0.840395 | 8.92E-58 | -1.69E-46 |
| MS.gene056043 | MS.gene88927 | -0.82101 | 5.07E-53 | -1.69E-46 |
| MS.gene056089 | MS.gene88927 | 0.806466 | 8.12E-50 | -1.69E-46 |
| MS.gene056097 | MS.gene88927 | 0.828083 | 1.09E-54 | -1.69E-46 |
| MS.gene056181 | MS.gene88927 | 0.843677 | 1.21E-58 | -1.69E-46 |
| MS.gene056308 | MS.gene88927 | 0.860657 | 1.77E-63 | -1.69E-46 |
| MS.gene056390 | MS.gene88927 | 0.841418 | 4.81E-58 | -1.69E-46 |
| MS.gene056507 | MS.gene88927 | 0.820079 | 8.29E-53 | -1.69E-46 |
| MS.gene056578 | MS.gene88927 | 0.857897 | 1.19E-62 | -1.69E-46 |
| MS.gene056699 | MS.gene88927 | 0.834514 | 2.87E-56 | -1.69E-46 |
| MS.gene056881 | MS.gene88927 | 0.825674 | 4.12E-54 | -1.69E-46 |
| MS.gene057102 | MS.gene88927 | 0.843743 | 1.16E-58 | -1.69E-46 |
| MS.gene058149 | MS.gene88927 | 0.827141 | 1.84E-54 | -1.69E-46 |
| MS.gene058261 | MS.gene88927 | 0.827041 | 1.95E-54 | -1.69E-46 |
| MS.gene058330 | MS.gene88927 | 0.832113 | 1.14E-55 | -1.69E-46 |
| MS.gene058492 | MS.gene88927 | 0.826174 | 3.13E-54 | -1.69E-46 |
| MS.gene058638 | MS.gene88927 | 0.837745 | 4.33E-57 | -1.69E-46 |
| MS.gene058639 | MS.gene88927 | 0.849722 | 2.70E-60 | -1.69E-46 |
| MS.gene058649 | MS.gene88927 | 0.819918 | 9.02E-53 | -1.69E-46 |
| MS.gene058668 | MS.gene88927 | 0.8132 | 2.89E-51 | -1.69E-46 |
| MS.gene058720 | MS.gene88927 | 0.826282 | 2.96E-54 | -1.69E-46 |
| MS.gene058758 | MS.gene88927 | 0.814488 | 1.50E-51 | -1.69E-46 |
| MS.gene058852 | MS.gene88927 | 0.848892 | 4.59E-60 | -1.69E-46 |
| MS.gene059146 | MS.gene88927 | 0.822831 | 1.92E-53 | -1.69E-46 |
| MS.gene059170 | MS.gene88927 | 0.805919 | 1.06E-49 | -1.69E-46 |
| MS.gene059171 | MS.gene88927 | 0.869435 | 3.10E-66 | -1.69E-46 |
| MS.gene059227 | MS.gene88927 | 0.830017 | 3.72E-55 | -1.69E-46 |
| MS.gene059725 | MS.gene88927 | 0.801623 | 8.25E-49 | -1.69E-46 |
| MS.gene059778 | MS.gene88927 | 0.846941 | 1.58E-59 | -1.69E-46 |
| MS.gene05978 | MS.gene88927 | 0.82783 | 1.26E-54 | -1.69E-46 |
| MS.gene059965 | MS.gene88927 | 0.82561 | 4.27E-54 | -1.69E-46 |
| MS.gene060563 | MS.gene88927 | 0.803304 | 3.72E-49 | -1.69E-46 |
| MS.gene060587 | MS.gene88927 | 0.811636 | 6.34E-51 | -1.69E-46 |
| MS.gene060937 | MS.gene88927 | 0.80854 | 2.95E-50 | -1.69E-46 |
| MS.gene061006 | MS.gene88927 | 0.845014 | 5.29E-59 | -1.69E-46 |
| MS.gene061100 | MS.gene88927 | 0.874642 | 5.76E-68 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene88927 | MS.gene06507 | PPI |
| MS.gene06508 | MS.gene88927 | PPI |
| MS.gene013410 | MS.gene88927 | PPI |
| MS.gene049383 | MS.gene88927 | PPI |
| MS.gene059336 | MS.gene88927 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88927.t1 | MTR_1g026590 | 99.420 | 345 | 2 | 0 | 1 | 345 | 1 | 345 | 0.0 | 691 |
| MS.gene88927.t1 | MTR_5g004620 | 79.179 | 341 | 70 | 1 | 5 | 344 | 7 | 347 | 0.0 | 531 |
| MS.gene88927.t1 | MTR_8g092190 | 51.692 | 325 | 145 | 3 | 12 | 335 | 14 | 327 | 6.27e-106 | 314 |
| MS.gene88927.t1 | MTR_3g095130 | 50.156 | 321 | 147 | 5 | 2 | 316 | 6 | 319 | 7.44e-104 | 308 |
| MS.gene88927.t1 | MTR_1g098240 | 52.665 | 319 | 140 | 5 | 2 | 316 | 6 | 317 | 5.09e-101 | 301 |
| MS.gene88927.t1 | MTR_3g095130 | 50.368 | 272 | 126 | 3 | 51 | 316 | 2 | 270 | 2.02e-88 | 267 |
| MS.gene88927.t1 | MTR_4g058860 | 36.446 | 332 | 201 | 2 | 4 | 335 | 3 | 324 | 5.16e-66 | 212 |
| MS.gene88927.t1 | MTR_2g094640 | 39.298 | 285 | 171 | 1 | 14 | 298 | 13 | 295 | 7.65e-65 | 209 |
| MS.gene88927.t1 | MTR_3g094260 | 39.068 | 279 | 168 | 1 | 30 | 308 | 29 | 305 | 2.41e-61 | 200 |
| MS.gene88927.t1 | MTR_3g094270 | 35.897 | 312 | 189 | 4 | 30 | 341 | 29 | 329 | 7.72e-57 | 188 |
| MS.gene88927.t1 | MTR_5g096310 | 31.889 | 323 | 207 | 5 | 15 | 332 | 59 | 373 | 1.99e-27 | 111 |
| MS.gene88927.t1 | MTR_2g038410 | 29.781 | 319 | 205 | 9 | 19 | 332 | 62 | 366 | 1.07e-25 | 106 |
| MS.gene88927.t1 | MTR_3g072380 | 25.000 | 252 | 187 | 2 | 82 | 332 | 88 | 338 | 1.62e-16 | 79.7 |
| MS.gene88927.t1 | MTR_1g030320 | 23.373 | 338 | 224 | 9 | 16 | 337 | 22 | 340 | 1.50e-14 | 73.9 |
| MS.gene88927.t1 | MTR_5g081710 | 24.127 | 315 | 219 | 5 | 1 | 304 | 1 | 306 | 5.45e-12 | 66.2 |
| MS.gene88927.t1 | MTR_4g018760 | 26.621 | 293 | 186 | 8 | 22 | 297 | 23 | 303 | 5.77e-12 | 66.2 |
| MS.gene88927.t1 | MTR_4g101860 | 25.763 | 295 | 200 | 8 | 22 | 304 | 63 | 350 | 7.98e-12 | 65.9 |
| MS.gene88927.t1 | MTR_3g462070 | 23.390 | 295 | 209 | 5 | 22 | 305 | 20 | 308 | 9.89e-12 | 65.5 |
| MS.gene88927.t1 | MTR_3g070000 | 23.448 | 290 | 213 | 3 | 22 | 304 | 35 | 322 | 1.84e-11 | 64.7 |
| MS.gene88927.t1 | MTR_1291s0010 | 41.935 | 93 | 52 | 1 | 14 | 106 | 13 | 103 | 3.95e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88927.t1 | AT1G21070 | 79.883 | 343 | 69 | 0 | 2 | 344 | 5 | 347 | 0.0 | 559 |
| MS.gene88927.t1 | AT1G76670 | 79.883 | 343 | 68 | 1 | 2 | 344 | 5 | 346 | 0.0 | 548 |
| MS.gene88927.t1 | AT1G76670 | 79.883 | 343 | 68 | 1 | 2 | 344 | 5 | 346 | 0.0 | 548 |
| MS.gene88927.t1 | AT5G42420 | 77.746 | 346 | 74 | 2 | 2 | 344 | 4 | 349 | 0.0 | 540 |
| MS.gene88927.t1 | AT4G09810 | 51.713 | 321 | 142 | 5 | 2 | 316 | 6 | 319 | 3.32e-107 | 317 |
| MS.gene88927.t1 | AT1G34020 | 51.792 | 307 | 137 | 4 | 16 | 316 | 18 | 319 | 1.75e-102 | 305 |
| MS.gene88927.t1 | AT1G34020 | 51.792 | 307 | 137 | 4 | 16 | 316 | 18 | 319 | 1.75e-102 | 305 |
| MS.gene88927.t1 | AT1G34020 | 51.792 | 307 | 137 | 4 | 16 | 316 | 18 | 319 | 1.75e-102 | 305 |
| MS.gene88927.t1 | AT4G39390 | 48.137 | 322 | 162 | 3 | 3 | 321 | 6 | 325 | 5.78e-99 | 296 |
| MS.gene88927.t1 | AT4G39390 | 48.137 | 322 | 162 | 3 | 3 | 321 | 10 | 329 | 7.58e-99 | 296 |
| MS.gene88927.t1 | AT4G39390 | 48.137 | 322 | 162 | 3 | 3 | 321 | 10 | 329 | 7.58e-99 | 296 |
| MS.gene88927.t1 | AT5G42420 | 73.988 | 173 | 43 | 1 | 174 | 344 | 110 | 282 | 4.95e-88 | 266 |
| MS.gene88927.t1 | AT5G42420 | 79.245 | 106 | 21 | 1 | 2 | 106 | 4 | 109 | 3.08e-53 | 177 |
| MS.gene88927.t1 | AT4G09810 | 51.331 | 263 | 119 | 3 | 60 | 316 | 3 | 262 | 5.96e-87 | 263 |
| MS.gene88927.t1 | AT4G09810 | 53.982 | 226 | 100 | 2 | 2 | 227 | 6 | 227 | 3.10e-76 | 234 |
| MS.gene88927.t1 | AT2G28315 | 36.873 | 339 | 198 | 3 | 4 | 342 | 3 | 325 | 6.34e-67 | 214 |
| MS.gene88927.t1 | AT2G30460 | 39.157 | 332 | 176 | 3 | 3 | 322 | 2 | 319 | 6.61e-67 | 214 |
| MS.gene88927.t1 | AT2G30460 | 39.157 | 332 | 176 | 3 | 3 | 322 | 2 | 319 | 6.61e-67 | 214 |
| MS.gene88927.t1 | AT2G28315 | 39.661 | 295 | 176 | 1 | 4 | 298 | 3 | 295 | 9.83e-67 | 213 |
| MS.gene88927.t1 | AT1G06890 | 38.177 | 351 | 182 | 5 | 3 | 341 | 2 | 329 | 1.18e-65 | 211 |
| MS.gene88927.t1 | AT1G06890 | 38.177 | 351 | 182 | 5 | 3 | 341 | 2 | 329 | 1.19e-65 | 211 |
| MS.gene88927.t1 | AT1G06890 | 38.177 | 351 | 182 | 5 | 3 | 341 | 2 | 329 | 2.53e-65 | 211 |
| MS.gene88927.t1 | AT1G06890 | 38.177 | 351 | 182 | 5 | 3 | 341 | 2 | 329 | 2.53e-65 | 211 |
| MS.gene88927.t1 | AT2G30460 | 38.832 | 291 | 154 | 2 | 44 | 322 | 20 | 298 | 5.21e-63 | 204 |
| MS.gene88927.t1 | AT2G30460 | 38.832 | 291 | 154 | 2 | 44 | 322 | 20 | 298 | 5.21e-63 | 204 |
| MS.gene88927.t1 | AT2G30460 | 38.832 | 291 | 154 | 2 | 44 | 322 | 20 | 298 | 5.21e-63 | 204 |
| MS.gene88927.t1 | AT2G30460 | 38.667 | 225 | 136 | 1 | 3 | 227 | 2 | 224 | 4.55e-37 | 136 |
| MS.gene88927.t1 | AT5G55950 | 31.447 | 318 | 202 | 7 | 19 | 331 | 4 | 310 | 1.76e-32 | 124 |
| MS.gene88927.t1 | AT5G55950 | 31.447 | 318 | 202 | 7 | 19 | 331 | 64 | 370 | 4.77e-32 | 124 |
| MS.gene88927.t1 | AT5G57100 | 32.292 | 288 | 177 | 7 | 19 | 298 | 71 | 348 | 6.03e-29 | 115 |
| MS.gene88927.t1 | AT5G55950 | 30.068 | 296 | 193 | 6 | 41 | 331 | 6 | 292 | 2.12e-27 | 110 |
| MS.gene88927.t1 | AT5G57100 | 33.166 | 199 | 127 | 4 | 101 | 298 | 40 | 233 | 1.40e-21 | 93.2 |
| MS.gene88927.t1 | AT5G57100 | 31.224 | 237 | 147 | 5 | 19 | 248 | 71 | 298 | 1.65e-21 | 93.6 |
| MS.gene88927.t1 | AT5G55950 | 31.197 | 234 | 151 | 4 | 19 | 248 | 64 | 291 | 2.94e-21 | 92.8 |
| MS.gene88927.t1 | AT1G77610 | 24.138 | 319 | 215 | 8 | 16 | 320 | 17 | 322 | 1.73e-14 | 73.9 |
| MS.gene88927.t1 | AT5G57100 | 32.386 | 176 | 101 | 5 | 15 | 180 | 67 | 234 | 4.61e-14 | 72.0 |
| MS.gene88927.t1 | AT1G21870 | 24.269 | 342 | 227 | 13 | 7 | 332 | 14 | 339 | 3.37e-13 | 70.1 |
| MS.gene88927.t1 | AT1G12500 | 26.246 | 301 | 201 | 9 | 22 | 309 | 69 | 361 | 5.66e-12 | 66.6 |
| MS.gene88927.t1 | AT3G11320 | 23.793 | 290 | 212 | 3 | 22 | 304 | 21 | 308 | 2.07e-11 | 64.3 |
| MS.gene88927.t1 | AT5G05820 | 23.368 | 291 | 214 | 3 | 22 | 305 | 21 | 309 | 4.32e-11 | 63.5 |
Find 0 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAGAAAAAGAAACATT+TGG | + | 6098:72661-72680 | MS.gene88927:intron | 15.0% |
| !!! | AAAAAAAGAAGTTTGATTTA+AGG | - | 6098:73103-73122 | None:intergenic | 15.0% |
| !!! | AATAAATCTATTGATTTGTT+GGG | - | 6098:72694-72713 | None:intergenic | 15.0% |
| !!! | GAAAATGAAAATTTTAAAAC+TGG | - | 6098:72309-72328 | None:intergenic | 15.0% |
| !!! | TAATAAATCTATTGATTTGT+TGG | - | 6098:72695-72714 | None:intergenic | 15.0% |
| !! | AAAAAGAAACATTTGGTTAT+GGG | + | 6098:72668-72687 | MS.gene88927:intron | 20.0% |
| !! | AAAGGACATCTTAATATAAA+TGG | - | 6098:72607-72626 | None:intergenic | 20.0% |
| !! | AACACTTGAATATAAATAAC+AGG | - | 6098:72633-72652 | None:intergenic | 20.0% |
| !! | AATATAAATAACAGGAGAAA+AGG | - | 6098:72625-72644 | None:intergenic | 20.0% |
| !! | AATGAAATGTGAAAAATGAA+TGG | - | 6098:71623-71642 | None:intergenic | 20.0% |
| !! | ACTATATATGCATATATTGT+TGG | + | 6098:73438-73457 | MS.gene88927:intron | 20.0% |
| !! | ATGAAATGTGAAAAATGAAT+GGG | - | 6098:71622-71641 | None:intergenic | 20.0% |
| !!! | AATGAAAATTTTAAAACTGG+AGG | - | 6098:72306-72325 | None:intergenic | 20.0% |
| !!! | CATCATTTTTATTCTTTTGA+AGG | + | 6098:72815-72834 | MS.gene88927:intron | 20.0% |
| ! | AAAAAAAATCAGGTATAGCA+AGG | - | 6098:73181-73200 | None:intergenic | 25.0% |
| ! | AAAAAAATCAGGTATAGCAA+GGG | - | 6098:73180-73199 | None:intergenic | 25.0% |
| ! | AATTTAGAAATCAAACTGGT+TGG | - | 6098:73068-73087 | None:intergenic | 25.0% |
| ! | AGATTTAGAGATTAATGAGT+TGG | + | 6098:72046-72065 | MS.gene88927:intron | 25.0% |
| ! | ATGATTCTAAACCAGTAAAT+TGG | + | 6098:72915-72934 | MS.gene88927:intron | 25.0% |
| ! | CTACAAAAGAAATATTCGAT+TGG | + | 6098:73229-73248 | MS.gene88927:CDS | 25.0% |
| ! | GAAAAAGAAACATTTGGTTA+TGG | + | 6098:72667-72686 | MS.gene88927:intron | 25.0% |
| ! | GATGTAAATGTTAACTTCAA+AGG | + | 6098:72477-72496 | MS.gene88927:CDS | 25.0% |
| ! | TCTAGATTCAACACAAAAAA+AGG | - | 6098:73393-73412 | None:intergenic | 25.0% |
| ! | TGGTAATTTAGAAATCAAAC+TGG | - | 6098:73072-73091 | None:intergenic | 25.0% |
| ! | TGGTCTATGATAGAATATTA+TGG | + | 6098:72081-72100 | MS.gene88927:intron | 25.0% |
| !! | TTCAGCATCTTTTATTATCT+TGG | + | 6098:73013-73032 | MS.gene88927:intron | 25.0% |
| !! | TTTGATTTAAGGAAGAAACT+TGG | - | 6098:73092-73111 | None:intergenic | 25.0% |
| AAAAAGGTGATCACTTACAA+TGG | - | 6098:73377-73396 | None:intergenic | 30.0% | |
| AAACAGACTTCATTGTTAAC+AGG | + | 6098:72880-72899 | MS.gene88927:intron | 30.0% | |
| AAATTAGGCTATTGAAGGAA+GGG | + | 6098:73781-73800 | MS.gene88927:CDS | 30.0% | |
| AACAGACTTCATTGTTAACA+GGG | + | 6098:72881-72900 | MS.gene88927:intron | 30.0% | |
| AATGGTTATGCTTTCACTTT+CGG | + | 6098:71553-71572 | MS.gene88927:CDS | 30.0% | |
| AGAAGAAATTAGGCTATTGA+AGG | + | 6098:73776-73795 | MS.gene88927:CDS | 30.0% | |
| ATCAAAACTAAGCATGATTC+CGG | + | 6098:72350-72369 | MS.gene88927:CDS | 30.0% | |
| ATTAGCCATGATAATTCCAA+CGG | - | 6098:71515-71534 | None:intergenic | 30.0% | |
| CAACAATGGGAAAAAAAATC+AGG | - | 6098:73191-73210 | None:intergenic | 30.0% | |
| CAATTACTTGACCAATTTAC+TGG | - | 6098:72929-72948 | None:intergenic | 30.0% | |
| CAGTAAATTGGTCAAGTAAT+TGG | + | 6098:72927-72946 | MS.gene88927:intron | 30.0% | |
| CCAAGTTCAATATCTTTCAA+CGG | - | 6098:73819-73838 | None:intergenic | 30.0% | |
| CTGAGATAGTAATCAACAAA+TGG | - | 6098:73316-73335 | None:intergenic | 30.0% | |
| TACATTACAAAACACAGCTA+AGG | - | 6098:73520-73539 | None:intergenic | 30.0% | |
| TATCATAGACCACCATATTT+CGG | - | 6098:72073-72092 | None:intergenic | 30.0% | |
| TCATTACTACAGAATCTACA+GGG | - | 6098:71947-71966 | None:intergenic | 30.0% | |
| TCTTTACAGCAAATTGTAAG+TGG | + | 6098:72534-72553 | MS.gene88927:intron | 30.0% | |
| ! | AACATTTTGTGTTCTGACTT+TGG | + | 6098:73602-73621 | MS.gene88927:CDS | 30.0% |
| ! | ACATTTTGTGTTCTGACTTT+GGG | + | 6098:73603-73622 | MS.gene88927:CDS | 30.0% |
| ! | AGTGTCTTTTAAATTTCTGC+AGG | + | 6098:73473-73492 | MS.gene88927:intron | 30.0% |
| ! | GAACACAAAATGTTTTCATG+TGG | - | 6098:73596-73615 | None:intergenic | 30.0% |
| ! | GATCTAAAATGAACATTGAC+TGG | - | 6098:72860-72879 | None:intergenic | 30.0% |
| ! | TTTGTTGATTACTATCTCAG+TGG | + | 6098:73316-73335 | MS.gene88927:CDS | 30.0% |
| AAACAGCTTATGTCCAACAA+TGG | + | 6098:71535-71554 | MS.gene88927:CDS | 35.0% | |
| AAACTTCCTGTGTTCTATAC+CGG | + | 6098:73129-73148 | MS.gene88927:intron | 35.0% | |
| AATTAGGCTATTGAAGGAAG+GGG | + | 6098:73782-73801 | MS.gene88927:CDS | 35.0% | |
| ACAGACTTCATTGTTAACAG+GGG | + | 6098:72882-72901 | MS.gene88927:intron | 35.0% | |
| ACCAGAAGACATCTTAAAGT+TGG | - | 6098:73353-73372 | None:intergenic | 35.0% | |
| AGATGAAAAGCAAGCATACT+TGG | - | 6098:71879-71898 | None:intergenic | 35.0% | |
| ATAAGAGAGAGAGCTTGAAT+AGG | - | 6098:73283-73302 | None:intergenic | 35.0% | |
| ATGCTTAGAAGCAGAATAAC+CGG | - | 6098:71761-71780 | None:intergenic | 35.0% | |
| CCAACAAATAGCATGATTTC+CGG | - | 6098:73151-73170 | None:intergenic | 35.0% | |
| CCATTGTTGTGATAGTCAAT+CGG | + | 6098:73202-73221 | MS.gene88927:intron | 35.0% | |
| CCGTTGAAAGATATTGAACT+TGG | + | 6098:73816-73835 | MS.gene88927:CDS | 35.0% | |
| CGATTGACTATCACAACAAT+GGG | - | 6098:73204-73223 | None:intergenic | 35.0% | |
| CGGCATGGTAATTTATAGTT+GGG | + | 6098:73689-73708 | MS.gene88927:CDS | 35.0% | |
| CTCACTTTCAAGAACATCAT+GGG | + | 6098:73648-73667 | MS.gene88927:CDS | 35.0% | |
| GAAAGATATTGAACTTGGTC+AGG | + | 6098:73821-73840 | MS.gene88927:CDS | 35.0% | |
| GAAATTAGGCTATTGAAGGA+AGG | + | 6098:73780-73799 | MS.gene88927:CDS | 35.0% | |
| GCCTAACAGAAGAAGAAATT+AGG | + | 6098:73766-73785 | MS.gene88927:CDS | 35.0% | |
| GCCTAATTTCTTCTTCTGTT+AGG | - | 6098:73770-73789 | None:intergenic | 35.0% | |
| GCTCTCTCTCTTATTATTCT+TGG | + | 6098:73289-73308 | MS.gene88927:CDS | 35.0% | |
| GTCATTACTACAGAATCTAC+AGG | - | 6098:71948-71967 | None:intergenic | 35.0% | |
| GTGAAAAATGAATGGGATCT+GGG | - | 6098:71615-71634 | None:intergenic | 35.0% | |
| GTTGCCAATATATCTATCAC+CGG | + | 6098:71814-71833 | MS.gene88927:CDS | 35.0% | |
| GTTTCTCTTATAGATTTCCC+AGG | - | 6098:72017-72036 | None:intergenic | 35.0% | |
| TAAATTCCATATTGCCCACA+TGG | - | 6098:72581-72600 | None:intergenic | 35.0% | |
| TACAGACACATCTTTCATCT+GGG | + | 6098:72713-72732 | MS.gene88927:intron | 35.0% | |
| TCGGCATGGTAATTTATAGT+TGG | + | 6098:73688-73707 | MS.gene88927:CDS | 35.0% | |
| TGTGAAAAATGAATGGGATC+TGG | - | 6098:71616-71635 | None:intergenic | 35.0% | |
| TTACAGACACATCTTTCATC+TGG | + | 6098:72712-72731 | MS.gene88927:intron | 35.0% | |
| TTCTAAGCATGTTCCTTTGT+GGG | + | 6098:71771-71790 | MS.gene88927:CDS | 35.0% | |
| TTGAATTGAAGATGAGTGCT+AGG | + | 6098:72759-72778 | MS.gene88927:intron | 35.0% | |
| TTGCCAATATATCTATCACC+GGG | + | 6098:71815-71834 | MS.gene88927:CDS | 35.0% | |
| TTTCAAGAACATCATGGGAA+TGG | + | 6098:73653-73672 | MS.gene88927:CDS | 35.0% | |
| ! | AGTGAAAGCATAACCATTGT+TGG | - | 6098:71551-71570 | None:intergenic | 35.0% |
| ! | CATTTTGTGTTCTGACTTTG+GGG | + | 6098:73604-73623 | MS.gene88927:CDS | 35.0% |
| ! | TAATGAGTTGGACCGAAATA+TGG | + | 6098:72058-72077 | MS.gene88927:intron | 35.0% |
| !! | AATATCGAACTTTGGAGCAT+GGG | + | 6098:71471-71490 | MS.gene88927:CDS | 35.0% |
| !! | ACCAACTTTAAGATGTCTTC+TGG | + | 6098:73349-73368 | MS.gene88927:CDS | 35.0% |
| !!! | TTAGGCTGTTTTTCGAATGA+GGG | - | 6098:73752-73771 | None:intergenic | 35.0% |
| AAAACTAAGCATGATTCCGG+TGG | + | 6098:72353-72372 | MS.gene88927:CDS | 40.0% | |
| AACCAAATAAGCTCCCACAA+AGG | - | 6098:71787-71806 | None:intergenic | 40.0% | |
| ATGGTTGTGGTTATTGGTGT+TGG | + | 6098:72438-72457 | MS.gene88927:CDS | 40.0% | |
| CATCCCGGTGATAGATATAT+TGG | - | 6098:71821-71840 | None:intergenic | 40.0% | |
| CCGATTGACTATCACAACAA+TGG | - | 6098:73205-73224 | None:intergenic | 40.0% | |
| CTTCTAAGCATGTTCCTTTG+TGG | + | 6098:71770-71789 | MS.gene88927:CDS | 40.0% | |
| GAGTTCCGTTGGAATTATCA+TGG | + | 6098:71507-71526 | MS.gene88927:CDS | 40.0% | |
| GCATACTTGGTAGAATCCAA+CGG | - | 6098:71866-71885 | None:intergenic | 40.0% | |
| GCTCACTTTCAAGAACATCA+TGG | + | 6098:73647-73666 | MS.gene88927:CDS | 40.0% | |
| GGTAATTTATAGTTGGGCTG+TGG | + | 6098:73695-73714 | MS.gene88927:CDS | 40.0% | |
| GGTGCAGATCTAATGTAATG+AGG | - | 6098:71594-71613 | None:intergenic | 40.0% | |
| TCAATCCTTAACCCACTAAC+CGG | - | 6098:72132-72151 | None:intergenic | 40.0% | |
| TCACAGCAAACACTACTCAA+GGG | + | 6098:72398-72417 | MS.gene88927:CDS | 40.0% | |
| TCGTCAGCAATATCGAACTT+TGG | + | 6098:71463-71482 | MS.gene88927:CDS | 40.0% | |
| TGATGATACAACTGCTACAC+AGG | - | 6098:72514-72533 | None:intergenic | 40.0% | |
| TGATTTCCGGTATAGAACAC+AGG | - | 6098:73138-73157 | None:intergenic | 40.0% | |
| TTCACAGCAAACACTACTCA+AGG | + | 6098:72397-72416 | MS.gene88927:CDS | 40.0% | |
| TTCCTTTGTGGGAGCTTATT+TGG | + | 6098:71782-71801 | MS.gene88927:CDS | 40.0% | |
| ! | CCGGAAATCATGCTATTTGT+TGG | + | 6098:73148-73167 | MS.gene88927:intron | 40.0% |
| ! | TTTGCTGTAACTGCTCTTGT+CGG | + | 6098:71718-71737 | MS.gene88927:CDS | 40.0% |
| ! | TTTTCATGTGGCCTAAAACC+TGG | - | 6098:73584-73603 | None:intergenic | 40.0% |
| !! | ATATCGAACTTTGGAGCATG+GGG | + | 6098:71472-71491 | MS.gene88927:CDS | 40.0% |
| !! | CAATATCGAACTTTGGAGCA+TGG | + | 6098:71470-71489 | MS.gene88927:CDS | 40.0% |
| !! | CTTCCTTTTAGAGACATGTG+CGG | + | 6098:72199-72218 | MS.gene88927:intron | 40.0% |
| !! | TTGAGTAGTGTTTGCTGTGA+AGG | - | 6098:72398-72417 | None:intergenic | 40.0% |
| !!! | GTTAGGCTGTTTTTCGAATG+AGG | - | 6098:73753-73772 | None:intergenic | 40.0% |
| AATGTGTCTGTTCCACCATG+TGG | + | 6098:72563-72582 | MS.gene88927:intron | 45.0% | |
| ATCCAACGGAATTGAGCATG+AGG | - | 6098:71852-71871 | None:intergenic | 45.0% | |
| ATGAACGTTGTGAGTTCCGT+TGG | + | 6098:71496-71515 | MS.gene88927:CDS | 45.0% | |
| ATGTGTCTGTTCCACCATGT+GGG | + | 6098:72564-72583 | MS.gene88927:intron | 45.0% | |
| ATTCCATATTGCCCACATGG+TGG | - | 6098:72578-72597 | None:intergenic | 45.0% | |
| CATGAGGCTTAAGTTCATCC+CGG | - | 6098:71836-71855 | None:intergenic | 45.0% | |
| CATTCCATCACACAAACCAC+CGG | - | 6098:72372-72391 | None:intergenic | 45.0% | |
| CTACCGCACATGTCTCTAAA+AGG | - | 6098:72205-72224 | None:intergenic | 45.0% | |
| GAAAGTGACAACTCGAGAGT+AGG | - | 6098:72272-72291 | None:intergenic | 45.0% | |
| GGAATGGTTCTTGCAGTTGT+CGG | + | 6098:73669-73688 | MS.gene88927:CDS | 45.0% | |
| TAAGCCAGTACCTCTGCATT+GGG | + | 6098:73538-73557 | MS.gene88927:CDS | 45.0% | |
| TACCAGCGACTACTTTGACT+GGG | + | 6098:71689-71708 | MS.gene88927:intron | 45.0% | |
| TCGGTCATGGTTGTGGTTAT+TGG | + | 6098:72432-72451 | MS.gene88927:CDS | 45.0% | |
| TGTTCATCAGCACTATTCGC+TGG | - | 6098:72960-72979 | None:intergenic | 45.0% | |
| TTACCAGCGACTACTTTGAC+TGG | + | 6098:71688-71707 | MS.gene88927:intron | 45.0% | |
| ! | AGATTTCCCAGGTTTTCCAC+TGG | - | 6098:72006-72025 | None:intergenic | 45.0% |
| ! | CTCAAGGGAAGTGAAAGTGT+CGG | + | 6098:72413-72432 | MS.gene88927:CDS | 45.0% |
| ! | GCAGTTTCCTTCCAGGTTTT+AGG | + | 6098:73570-73589 | MS.gene88927:CDS | 45.0% |
| ! | TGAGTTGGACCGAAATATGG+TGG | + | 6098:72061-72080 | MS.gene88927:intron | 45.0% |
| ! | TTTGTGTTCTGACTTTGGGG+TGG | + | 6098:73607-73626 | MS.gene88927:CDS | 45.0% |
| AACCCAGTCAAAGTAGTCGC+TGG | - | 6098:71694-71713 | None:intergenic | 50.0% | |
| ACTACAGCCAGTGGAAAACC+TGG | + | 6098:71996-72015 | MS.gene88927:intron | 50.0% | |
| AGCCTCATGCTCAATTCCGT+TGG | + | 6098:71847-71866 | MS.gene88927:CDS | 50.0% | |
| AGTCAGATCACTACAGCCAG+TGG | + | 6098:71987-72006 | MS.gene88927:intron | 50.0% | |
| CATGTGGCCTAAAACCTGGA+AGG | - | 6098:73580-73599 | None:intergenic | 50.0% | |
| CTACAGCCAGTGGAAAACCT+GGG | + | 6098:71997-72016 | MS.gene88927:intron | 50.0% | |
| CTTAACCCACTAACCGGAGT+CGG | - | 6098:72126-72145 | None:intergenic | 50.0% | |
| CTTCTCAGCAGTTTCCTTCC+AGG | + | 6098:73563-73582 | MS.gene88927:CDS | 50.0% | |
| GGACTCGTCTCAAATGCTAC+CGG | + | 6098:71739-71758 | MS.gene88927:CDS | 50.0% | |
| GTAAGCCAGTACCTCTGCAT+TGG | + | 6098:73537-73556 | MS.gene88927:CDS | 50.0% | |
| GTTCCACCATGTGGGCAATA+TGG | + | 6098:72572-72591 | MS.gene88927:intron | 50.0% | |
| TGAGGGAGAGTCTTCGCATT+TGG | - | 6098:73735-73754 | None:intergenic | 50.0% | |
| ! | CGGTGGTTTGTGTGATGGAA+TGG | + | 6098:72370-72389 | MS.gene88927:CDS | 50.0% |
| ! | GATTCCGGTGGTTTGTGTGA+TGG | + | 6098:72365-72384 | MS.gene88927:CDS | 50.0% |
| ! | TTGATCCATGTAGCCGACTC+CGG | + | 6098:72110-72129 | MS.gene88927:intron | 50.0% |
| !! | GAAAGTGTCGGTCATGGTTG+TGG | + | 6098:72425-72444 | MS.gene88927:CDS | 50.0% |
| !! | GGAAGTGAAAGTGTCGGTCA+TGG | + | 6098:72419-72438 | MS.gene88927:CDS | 50.0% |
| ACTAACCGGAGTCGGCTACA+TGG | - | 6098:72118-72137 | None:intergenic | 55.0% | |
| GGTTCTTGCAGTTGTCGGCA+TGG | + | 6098:73674-73693 | MS.gene88927:CDS | 55.0% | |
| ! | ATGTAGCCGACTCCGGTTAG+TGG | + | 6098:72117-72136 | MS.gene88927:intron | 55.0% |
| ! | TGTAGCCGACTCCGGTTAGT+GGG | + | 6098:72118-72137 | MS.gene88927:intron | 55.0% |
| !! | CGACTCCGGTTAGTGGGTTA+AGG | + | 6098:72124-72143 | MS.gene88927:intron | 55.0% |
| ! | AGCGCCCAATGCAGAGGTAC+TGG | - | 6098:73545-73564 | None:intergenic | 60.0% |
| !! | CTGAGAAGCGCCCAATGCAG+AGG | - | 6098:73551-73570 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 6098 | gene | 71445 | 73854 | 71445 | ID=MS.gene88927 |
| 6098 | mRNA | 71445 | 73854 | 71445 | ID=MS.gene88927.t1;Parent=MS.gene88927 |
| 6098 | exon | 71445 | 71574 | 71445 | ID=MS.gene88927.t1.exon1;Parent=MS.gene88927.t1 |
| 6098 | CDS | 71445 | 71574 | 71445 | ID=cds.MS.gene88927.t1;Parent=MS.gene88927.t1 |
| 6098 | exon | 71695 | 71879 | 71695 | ID=MS.gene88927.t1.exon2;Parent=MS.gene88927.t1 |
| 6098 | CDS | 71695 | 71879 | 71695 | ID=cds.MS.gene88927.t1;Parent=MS.gene88927.t1 |
| 6098 | exon | 72348 | 72548 | 72348 | ID=MS.gene88927.t1.exon3;Parent=MS.gene88927.t1 |
| 6098 | CDS | 72348 | 72548 | 72348 | ID=cds.MS.gene88927.t1;Parent=MS.gene88927.t1 |
| 6098 | exon | 73217 | 73378 | 73217 | ID=MS.gene88927.t1.exon4;Parent=MS.gene88927.t1 |
| 6098 | CDS | 73217 | 73378 | 73217 | ID=cds.MS.gene88927.t1;Parent=MS.gene88927.t1 |
| 6098 | exon | 73495 | 73854 | 73495 | ID=MS.gene88927.t1.exon5;Parent=MS.gene88927.t1 |
| 6098 | CDS | 73495 | 73854 | 73495 | ID=cds.MS.gene88927.t1;Parent=MS.gene88927.t1 |
| Gene Sequence |
| Protein sequence |
