Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013539.t1 | XP_024635978.1 | 98.2 | 668 | 11 | 1 | 14 | 681 | 1 | 667 | 0.00E+00 | 1306.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013539.t1 | Q2EF88 | 76.1 | 664 | 155 | 3 | 19 | 681 | 12 | 672 | 1.3e-298 | 1026.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013539.t1 | G7J868 | 98.2 | 668 | 11 | 1 | 14 | 681 | 1 | 667 | 0.0e+00 | 1306.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene013539 | MS.gene004968 | PPI |
| MS.gene013539 | MS.gene86821 | PPI |
| MS.gene013539 | MS.gene07505 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013539.t1 | MTR_3g092090 | 98.204 | 668 | 11 | 1 | 14 | 681 | 1 | 667 | 0.0 | 1340 |
| MS.gene013539.t1 | MTR_3g092090 | 98.321 | 655 | 10 | 1 | 14 | 668 | 1 | 654 | 0.0 | 1311 |
| MS.gene013539.t1 | MTR_1g007580 | 74.370 | 675 | 164 | 5 | 14 | 681 | 1 | 673 | 0.0 | 1036 |
| MS.gene013539.t1 | MTR_0312s0020 | 73.731 | 670 | 169 | 5 | 18 | 681 | 5 | 673 | 0.0 | 1017 |
| MS.gene013539.t1 | MTR_1g007540 | 73.731 | 670 | 169 | 5 | 18 | 681 | 5 | 673 | 0.0 | 1017 |
| MS.gene013539.t1 | MTR_1g077840 | 65.172 | 669 | 217 | 4 | 17 | 677 | 17 | 677 | 0.0 | 917 |
| MS.gene013539.t1 | MTR_7g028250 | 54.206 | 642 | 288 | 2 | 45 | 680 | 35 | 676 | 0.0 | 768 |
| MS.gene013539.t1 | MTR_5g091600 | 56.036 | 671 | 284 | 6 | 14 | 677 | 1 | 667 | 0.0 | 758 |
| MS.gene013539.t1 | MTR_6g077870 | 53.293 | 668 | 294 | 8 | 21 | 677 | 37 | 697 | 0.0 | 747 |
| MS.gene013539.t1 | MTR_3g063490 | 54.839 | 682 | 289 | 7 | 3 | 677 | 12 | 681 | 0.0 | 741 |
| MS.gene013539.t1 | MTR_3g063520 | 54.801 | 677 | 285 | 6 | 19 | 677 | 2 | 675 | 0.0 | 724 |
| MS.gene013539.t1 | MTR_6g077870 | 55.535 | 533 | 227 | 5 | 154 | 677 | 5 | 536 | 0.0 | 619 |
| MS.gene013539.t1 | MTR_1626s0010 | 71.064 | 235 | 66 | 1 | 226 | 458 | 1 | 235 | 5.99e-120 | 357 |
| MS.gene013539.t1 | MTR_5g091615 | 61.184 | 152 | 58 | 1 | 528 | 678 | 57 | 208 | 2.32e-52 | 183 |
| MS.gene013539.t1 | MTR_0312s0050 | 71.074 | 121 | 30 | 2 | 14 | 130 | 1 | 120 | 1.55e-47 | 164 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013539.t1 | AT5G53550 | 75.486 | 669 | 162 | 2 | 14 | 681 | 5 | 672 | 0.0 | 1053 |
| MS.gene013539.t1 | AT5G53550 | 75.486 | 669 | 162 | 2 | 14 | 681 | 5 | 672 | 0.0 | 1053 |
| MS.gene013539.t1 | AT5G53550 | 75.486 | 669 | 162 | 2 | 14 | 681 | 5 | 672 | 0.0 | 1053 |
| MS.gene013539.t1 | AT5G53550 | 75.486 | 669 | 162 | 2 | 14 | 681 | 5 | 672 | 0.0 | 1053 |
| MS.gene013539.t1 | AT5G53550 | 75.486 | 669 | 162 | 2 | 14 | 681 | 5 | 672 | 0.0 | 1053 |
| MS.gene013539.t1 | AT5G24380 | 72.727 | 660 | 173 | 4 | 25 | 677 | 1 | 660 | 0.0 | 1006 |
| MS.gene013539.t1 | AT4G24120 | 63.868 | 667 | 235 | 4 | 17 | 680 | 10 | 673 | 0.0 | 915 |
| MS.gene013539.t1 | AT5G53550 | 77.255 | 510 | 116 | 0 | 172 | 681 | 1 | 510 | 0.0 | 834 |
| MS.gene013539.t1 | AT1G65730 | 57.887 | 672 | 268 | 8 | 17 | 677 | 5 | 672 | 0.0 | 794 |
| MS.gene013539.t1 | AT5G41000 | 53.961 | 669 | 298 | 4 | 22 | 680 | 2 | 670 | 0.0 | 766 |
| MS.gene013539.t1 | AT3G27020 | 52.006 | 673 | 310 | 5 | 16 | 680 | 6 | 673 | 0.0 | 743 |
| MS.gene013539.t1 | AT5G41000 | 52.640 | 663 | 291 | 4 | 22 | 680 | 2 | 645 | 0.0 | 728 |
| MS.gene013539.t1 | AT1G48370 | 52.131 | 704 | 286 | 5 | 20 | 677 | 9 | 707 | 0.0 | 709 |
| MS.gene013539.t1 | AT3G17650 | 54.587 | 654 | 278 | 5 | 41 | 680 | 52 | 700 | 0.0 | 708 |
| MS.gene013539.t1 | AT3G17650 | 54.587 | 654 | 278 | 5 | 41 | 680 | 52 | 700 | 0.0 | 708 |
| MS.gene013539.t1 | AT1G48370 | 55.948 | 538 | 222 | 3 | 155 | 677 | 7 | 544 | 0.0 | 583 |
| MS.gene013539.t1 | AT5G41000 | 54.858 | 494 | 216 | 3 | 194 | 680 | 1 | 494 | 0.0 | 576 |
| MS.gene013539.t1 | AT5G45450 | 53.589 | 209 | 90 | 2 | 474 | 681 | 1 | 203 | 4.21e-67 | 219 |
Find 158 sgRNAs with CRISPR-Local
Find 245 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATAGAAACATGGCAATTT+TGG | 0.087728 | 3.4:+84279360 | MS.gene013539:CDS |
| CTTTCTTCTTCATTGCTTCT+AGG | 0.098551 | 3.4:-84276506 | None:intergenic |
| CATCAAGAGGCAACGGTTTC+TGG | 0.144768 | 3.4:-84278826 | None:intergenic |
| GCTACTGCTGTTCTCATTAA+TGG | 0.147427 | 3.4:+84277918 | MS.gene013539:CDS |
| ATTTCCATTGCCTTGATTCT+TGG | 0.193274 | 3.4:+84278586 | MS.gene013539:CDS |
| TTCGTTCAATTTCCTACTTT+TGG | 0.198415 | 3.4:+84278160 | MS.gene013539:CDS |
| CTCGGTTTCTGCAATGCTTA+TGG | 0.201044 | 3.4:+84279010 | MS.gene013539:CDS |
| ATCCATTCTCGCTTTGTTAA+AGG | 0.211152 | 3.4:+84279684 | MS.gene013539:CDS |
| ATTTGCTATAGTGGCTAATT+TGG | 0.231621 | 3.4:+84279444 | MS.gene013539:CDS |
| TTCTTGGTGCTGTGGTTTCT+TGG | 0.236646 | 3.4:+84278379 | MS.gene013539:CDS |
| GTGATAATTGTAGGTGGTTT+TGG | 0.241603 | 3.4:+84277389 | MS.gene013539:intron |
| ATGGTTCCTGCAGTTGCTTC+TGG | 0.250260 | 3.4:+84279625 | MS.gene013539:CDS |
| GTTAATTTATCATTACTTCT+TGG | 0.262551 | 3.4:+84278363 | MS.gene013539:CDS |
| AGCTACTTTCCCGTAGTTAT+AGG | 0.273083 | 3.4:-84279059 | None:intergenic |
| AGACTCCTCATGCTACTTTC+TGG | 0.288803 | 3.4:-84278459 | None:intergenic |
| AAATATTACTACCTTTCTAA+TGG | 0.292121 | 3.4:-84277564 | None:intergenic |
| TCTTGGTGCTGTGGTTTCTT+GGG | 0.298595 | 3.4:+84278380 | MS.gene013539:CDS |
| CAAGAGAAAACATTCCTATA+TGG | 0.305526 | 3.4:+84278873 | MS.gene013539:CDS |
| CTAATAGCTAGTCTTATAAT+TGG | 0.306234 | 3.4:+84276629 | MS.gene013539:CDS |
| GGAAGAAGCTCATGCATATT+GGG | 0.306322 | 3.4:-84279714 | None:intergenic |
| GCTAATTTGGTCAGAGATCT+TGG | 0.320079 | 3.4:+84279457 | MS.gene013539:CDS |
| GGTGTAGTTGCTGGACTTGT+AGG | 0.321187 | 3.4:+84279118 | MS.gene013539:CDS |
| AATATTACTACCTTTCTAAT+GGG | 0.327178 | 3.4:-84277563 | None:intergenic |
| AATGTTTCTGCTGCTCTACT+TGG | 0.337923 | 3.4:+84276713 | MS.gene013539:CDS |
| GGGAAGAAGCTCATGCATAT+TGG | 0.346099 | 3.4:-84279715 | None:intergenic |
| TTTCCCAGGAAGCAGGTTCA+TGG | 0.348721 | 3.4:+84278061 | MS.gene013539:intron |
| TTGGCCATCACATCTCCTTT+AGG | 0.349476 | 3.4:-84277951 | None:intergenic |
| CTTACCTATTGGGGTTGAAT+AGG | 0.349732 | 3.4:+84277414 | MS.gene013539:CDS |
| TGAAGAGGGTCAAGTGGCTT+TGG | 0.350110 | 3.4:+84276553 | MS.gene013539:CDS |
| GCATCGAACGCGGCGAAGTC+AGG | 0.357170 | 3.4:-84279213 | None:intergenic |
| TTTGTGCTTGCAGCCTTAGC+TGG | 0.364700 | 3.4:+84279085 | MS.gene013539:CDS |
| TTCTGCAATGCTTATGGTGC+TGG | 0.367238 | 3.4:+84279016 | MS.gene013539:CDS |
| CAGCAGAAACATTGAGATTA+GGG | 0.371403 | 3.4:-84276703 | None:intergenic |
| CCTTTAATCAAGGGACTAAA+AGG | 0.382404 | 3.4:+84278414 | MS.gene013539:CDS |
| AGCTAAAAGTCCAACAAAAC+TGG | 0.385920 | 3.4:-84277534 | None:intergenic |
| AGGCAACGGTTTCTGGTTAC+CGG | 0.387225 | 3.4:-84278819 | None:intergenic |
| ATGGCATATGCTGAACAAAA+AGG | 0.393790 | 3.4:+84279591 | MS.gene013539:CDS |
| GCAGCAGAAACATTGAGATT+AGG | 0.397117 | 3.4:-84276704 | None:intergenic |
| CAAGCAATTGGAACAGCAAT+AGG | 0.397656 | 3.4:+84279244 | MS.gene013539:CDS |
| GCTGTCATCCAACCAATTGC+AGG | 0.397989 | 3.4:-84277497 | None:intergenic |
| TTGCCTTGATTCTTGGTGAC+GGG | 0.403348 | 3.4:+84278593 | MS.gene013539:CDS |
| GTTGCTTCTGGTTTGATTTG+TGG | 0.403400 | 3.4:+84279637 | MS.gene013539:CDS |
| CCTATATGGTTGGCATGTAC+AGG | 0.406055 | 3.4:+84278887 | MS.gene013539:CDS |
| TCACTTGAGGGAACATCAAC+GGG | 0.412509 | 3.4:-84278946 | None:intergenic |
| CTATTGCTGTTCCAATTGCT+TGG | 0.417224 | 3.4:-84279243 | None:intergenic |
| ATCCGAACATTCTACCTAGT+TGG | 0.417259 | 3.4:-84279736 | None:intergenic |
| GAGGAGTCTCAATGGTTATA+AGG | 0.419961 | 3.4:+84278473 | MS.gene013539:CDS |
| TCATTGCTTCTAGGATCCAT+TGG | 0.423466 | 3.4:-84276497 | None:intergenic |
| ATGAACATGGCCTATAACTA+CGG | 0.432565 | 3.4:+84279049 | MS.gene013539:CDS |
| TATATCTTTGCACCCTCGCT+CGG | 0.434598 | 3.4:+84278992 | MS.gene013539:CDS |
| TTTCTATATATAATAGCATA+TGG | 0.439609 | 3.4:-84279346 | None:intergenic |
| TGGATTCGTGAAATTCTTCT+CGG | 0.439741 | 3.4:+84278081 | MS.gene013539:CDS |
| TTCTTTCAGTGGTTCTTCAC+CGG | 0.441235 | 3.4:+84278121 | MS.gene013539:CDS |
| GTTTCGTGTTTATTCGAAGT+TGG | 0.443395 | 3.4:+84276735 | MS.gene013539:CDS |
| CACAATTGCAAGCAATGATC+TGG | 0.443822 | 3.4:-84279406 | None:intergenic |
| TGATTTGTGGAGATGGATTG+TGG | 0.443828 | 3.4:+84279650 | MS.gene013539:CDS |
| TCCGAACATTCTACCTAGTT+GGG | 0.444491 | 3.4:-84279735 | None:intergenic |
| CTACTTTCTGGTATACTAGC+AGG | 0.446822 | 3.4:-84278447 | None:intergenic |
| CATCATGTGGCCTTTAATCA+AGG | 0.447164 | 3.4:+84278404 | MS.gene013539:CDS |
| GTTATAGGCCATGTTCATAT+CGG | 0.447379 | 3.4:-84279044 | None:intergenic |
| ATCATTACTTCTTGGTGCTG+TGG | 0.449328 | 3.4:+84278371 | MS.gene013539:CDS |
| AGGAAACAAATAACGGTTAG+AGG | 0.449869 | 3.4:+84276605 | MS.gene013539:CDS |
| ATGCTTGTAAGCCAAGCAAT+TGG | 0.450560 | 3.4:+84279232 | MS.gene013539:CDS |
| CAACTTCTTTCCCAGGAAGC+AGG | 0.452937 | 3.4:+84278054 | MS.gene013539:intron |
| TGATATGTGTGTGGGCAGTT+TGG | 0.454112 | 3.4:+84279558 | MS.gene013539:CDS |
| CCAACCAATTGCAGGCTCCT+TGG | 0.459143 | 3.4:-84277489 | None:intergenic |
| ACCGTTATTTGTTTCCTCCA+TGG | 0.461080 | 3.4:-84276599 | None:intergenic |
| AAAAGTGATGGTGTAGTTGC+TGG | 0.461342 | 3.4:+84279109 | MS.gene013539:CDS |
| CATGCTTGCAATCCAAAAGT+AGG | 0.463508 | 3.4:-84278172 | None:intergenic |
| TCCTCCTATTCAACCCCAAT+AGG | 0.466854 | 3.4:-84277418 | None:intergenic |
| TCTGGTTTGATTTGTGGAGA+TGG | 0.470689 | 3.4:+84279643 | MS.gene013539:CDS |
| ATGAAACTCAATCTCACTAC+TGG | 0.473510 | 3.4:+84276674 | MS.gene013539:CDS |
| ATTGCCTTGATTCTTGGTGA+CGG | 0.475192 | 3.4:+84278592 | MS.gene013539:CDS |
| TTAATGCATGATTTGAAGAC+TGG | 0.475318 | 3.4:+84279181 | MS.gene013539:CDS |
| GCAGTTTGGTTGTGTTTGCA+TGG | 0.476185 | 3.4:+84279572 | MS.gene013539:CDS |
| CTTGGTGCTGTGGTTTCTTG+GGG | 0.477037 | 3.4:+84278381 | MS.gene013539:CDS |
| GATTTCAGTATGACTTATGT+TGG | 0.478042 | 3.4:+84278315 | MS.gene013539:CDS |
| AGTACCAAGGAGCCTGCAAT+TGG | 0.478104 | 3.4:+84277485 | MS.gene013539:CDS |
| AGTATGACTTATGTTGGAGC+AGG | 0.480669 | 3.4:+84278321 | MS.gene013539:CDS |
| CGAAATACCACTTCACTTGA+GGG | 0.484238 | 3.4:-84278958 | None:intergenic |
| AACCTTTAACAAAGCGAGAA+TGG | 0.486612 | 3.4:-84279686 | None:intergenic |
| ACCTATTGGGGTTGAATAGG+AGG | 0.492406 | 3.4:+84277417 | MS.gene013539:CDS |
| AGCTTTGGTCCCCATTAGAA+AGG | 0.492724 | 3.4:+84277553 | MS.gene013539:CDS |
| GGAGCCTTGTAAATACCATC+TGG | 0.494006 | 3.4:-84279325 | None:intergenic |
| GTGCAAAGATATACGCAAAC+AGG | 0.500464 | 3.4:-84278982 | None:intergenic |
| GTATTCTCTTGTCTAGTGAA+TGG | 0.504845 | 3.4:-84276794 | None:intergenic |
| ACGAAATACCACTTCACTTG+AGG | 0.508373 | 3.4:-84278959 | None:intergenic |
| GCATGAGCTTCTTCCCAACT+AGG | 0.511779 | 3.4:+84279722 | MS.gene013539:CDS |
| AGGAGGACTTATGAGCAAGC+AGG | 0.511921 | 3.4:+84277434 | MS.gene013539:CDS |
| AATGGATTACATACTCCTAA+AGG | 0.522132 | 3.4:+84277936 | MS.gene013539:CDS |
| TTGTTTGGGCATTCTTTCAG+TGG | 0.523035 | 3.4:+84278110 | MS.gene013539:CDS |
| CCTGTACATGCCAACCATAT+AGG | 0.529263 | 3.4:-84278887 | None:intergenic |
| TGGTTTCTTGGGGCATCATG+TGG | 0.532153 | 3.4:+84278391 | MS.gene013539:CDS |
| AAAGGCACAGCCATAGCCAT+TGG | 0.535040 | 3.4:-84279511 | None:intergenic |
| CATGTTGGCATGGATATTTG+TGG | 0.538954 | 3.4:-84278650 | None:intergenic |
| AAGCCCGTCACCAAGAATCA+AGG | 0.539491 | 3.4:-84278596 | None:intergenic |
| AACTGCACAAGTTTGAATGA+TGG | 0.544051 | 3.4:-84276816 | None:intergenic |
| GATTCCACTTCCAATGGCTA+TGG | 0.544827 | 3.4:+84279501 | MS.gene013539:CDS |
| TCAAGGGACTAAAAGGAGAA+TGG | 0.544830 | 3.4:+84278421 | MS.gene013539:CDS |
| CTTTGCCATTGATATGTGTG+TGG | 0.545535 | 3.4:+84279549 | MS.gene013539:CDS |
| CATTGCTTGCAATTGTGTTG+TGG | 0.546205 | 3.4:+84279412 | MS.gene013539:CDS |
| CCAAGGAGCCTGCAATTGGT+TGG | 0.548985 | 3.4:+84277489 | MS.gene013539:CDS |
| TTCACTTGAGGGAACATCAA+CGG | 0.551169 | 3.4:-84278947 | None:intergenic |
| GCGGCGAAGTCAGGGTGAGA+TGG | 0.552073 | 3.4:-84279204 | None:intergenic |
| AAATCCAGATGGTATTTACA+AGG | 0.553711 | 3.4:+84279321 | MS.gene013539:CDS |
| GTACTACCAGGAGTATTCCC+TGG | 0.553929 | 3.4:-84277467 | None:intergenic |
| TGCTATAGCATCGCTGTAGG+AGG | 0.553956 | 3.4:+84276842 | MS.gene013539:CDS |
| CATCGAACGCGGCGAAGTCA+GGG | 0.554220 | 3.4:-84279212 | None:intergenic |
| GTTGCTGGACTTGTAGGGTG+TGG | 0.557924 | 3.4:+84279124 | MS.gene013539:CDS |
| TTCACCGGTGGAGATAATTG+TGG | 0.560104 | 3.4:+84278136 | MS.gene013539:CDS |
| ACAGCCATAGCCATTGGAAG+TGG | 0.561223 | 3.4:-84279505 | None:intergenic |
| TGAACATGGCCTATAACTAC+GGG | 0.561537 | 3.4:+84279050 | MS.gene013539:CDS |
| AGTAGCATGAGGAGTCTCAA+TGG | 0.563553 | 3.4:+84278465 | MS.gene013539:CDS |
| ACTGCCCACACACATATCAA+TGG | 0.566403 | 3.4:-84279554 | None:intergenic |
| CAAGCAGGGATTGATACACC+AGG | 0.567204 | 3.4:+84277449 | MS.gene013539:CDS |
| AGAAAACATTCCTATATGGT+TGG | 0.567556 | 3.4:+84278877 | MS.gene013539:CDS |
| GTCACCAAGAATCAAGGCAA+TGG | 0.567587 | 3.4:-84278590 | None:intergenic |
| TACTCCTAAAGGAGATGTGA+TGG | 0.574037 | 3.4:+84277947 | MS.gene013539:CDS |
| TTTCAGTGGTTCTTCACCGG+TGG | 0.574136 | 3.4:+84278124 | MS.gene013539:CDS |
| TTTGATGTTGGAAATCCAGA+TGG | 0.575304 | 3.4:+84279310 | MS.gene013539:CDS |
| GAAGTGGATTCCACTTCCAA+TGG | 0.575440 | 3.4:+84279495 | MS.gene013539:CDS |
| GCAGGCTCCTTGGTACTACC+AGG | 0.579102 | 3.4:-84277479 | None:intergenic |
| GATACACCAGGGAATACTCC+TGG | 0.584209 | 3.4:+84277461 | MS.gene013539:CDS |
| CTATATGGTTGGCATGTACA+GGG | 0.588281 | 3.4:+84278888 | MS.gene013539:CDS |
| ACAGCAGTAGCAGTTCCACT+TGG | 0.588358 | 3.4:-84277906 | None:intergenic |
| AACAAAGCGAGAATGGATGA+AGG | 0.588783 | 3.4:-84279679 | None:intergenic |
| ACCATGGAGGAAACAAATAA+CGG | 0.589309 | 3.4:+84276598 | MS.gene013539:CDS |
| TACAAATTAACTTATCCAAG+TGG | 0.593111 | 3.4:+84277891 | MS.gene013539:CDS |
| ATCAAACCAGAAGCAACTGC+AGG | 0.595717 | 3.4:-84279631 | None:intergenic |
| GGAGGACTTATGAGCAAGCA+GGG | 0.597449 | 3.4:+84277435 | MS.gene013539:CDS |
| TTTGCCATTGATATGTGTGT+GGG | 0.600242 | 3.4:+84279550 | MS.gene013539:CDS |
| TGATGTTCCCTCAAGTGAAG+TGG | 0.600343 | 3.4:+84278951 | MS.gene013539:CDS |
| GGAGGAATCTGTGAATCCAA+TGG | 0.600474 | 3.4:+84276481 | MS.gene013539:CDS |
| ATATTACTACCTTTCTAATG+GGG | 0.600914 | 3.4:-84277562 | None:intergenic |
| GAAGAAGCTCATGCATATTG+GGG | 0.601134 | 3.4:-84279713 | None:intergenic |
| CTGAGATCATCAAGAGGCAA+CGG | 0.603310 | 3.4:-84278833 | None:intergenic |
| GTGTAGTTGCTGGACTTGTA+GGG | 0.605151 | 3.4:+84279119 | MS.gene013539:CDS |
| TACTTTCTGGTATACTAGCA+GGG | 0.607935 | 3.4:-84278446 | None:intergenic |
| ATCATGTGGCCTTTAATCAA+GGG | 0.610873 | 3.4:+84278405 | MS.gene013539:CDS |
| TGCTATTATATATAGAAACA+TGG | 0.616203 | 3.4:+84279351 | MS.gene013539:CDS |
| AATCATCATCACATTGAAGA+GGG | 0.616737 | 3.4:+84276539 | MS.gene013539:CDS |
| TGGATTAACCGATATGAACA+TGG | 0.621595 | 3.4:+84279036 | MS.gene013539:CDS |
| GAATCATCATCACATTGAAG+AGG | 0.626811 | 3.4:+84276538 | MS.gene013539:CDS |
| TCACATTGAAGAGGGTCAAG+TGG | 0.632388 | 3.4:+84276547 | MS.gene013539:CDS |
| GCTTGCTATAGCATCGCTGT+AGG | 0.643439 | 3.4:+84276839 | MS.gene013539:CDS |
| AGCATTGCAGAAACCGAGCG+AGG | 0.645992 | 3.4:-84279005 | None:intergenic |
| GATTGGTTCAATCACAGTGG+AGG | 0.656647 | 3.4:+84276463 | MS.gene013539:CDS |
| GAATCCACAATTATCTCCAC+CGG | 0.658242 | 3.4:-84278140 | None:intergenic |
| TTTCGTCTGAGATCATCAAG+AGG | 0.663470 | 3.4:-84278839 | None:intergenic |
| GCATTGCAGAAACCGAGCGA+GGG | 0.667087 | 3.4:-84279004 | None:intergenic |
| TGGCTTACAAGCATCGAACG+CGG | 0.667535 | 3.4:-84279223 | None:intergenic |
| GTATACCAGAAAGTAGCATG+AGG | 0.678156 | 3.4:+84278454 | MS.gene013539:CDS |
| GAATACTCCTGGTAGTACCA+AGG | 0.678175 | 3.4:+84277472 | MS.gene013539:CDS |
| TGAATAGAATAGCACCATGG+AGG | 0.711294 | 3.4:+84276585 | MS.gene013539:CDS |
| AAGAAGCTCATGCATATTGG+GGG | 0.716419 | 3.4:-84279712 | None:intergenic |
| AAGCAGGGATTGATACACCA+GGG | 0.727787 | 3.4:+84277450 | MS.gene013539:CDS |
| GATGATTGGTTCAATCACAG+TGG | 0.734769 | 3.4:+84276460 | None:intergenic |
| AGTTGAATAGAATAGCACCA+TGG | 0.738039 | 3.4:+84276582 | MS.gene013539:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATAATATAGATTTGATA+AGG | - | chr3.4:84278524-84278543 | None:intergenic | 10.0% |
| !!! | AAAAAAATATTAGATTTTAC+AGG | - | chr3.4:84278786-84278805 | None:intergenic | 10.0% |
| !!! | TATTTTTCTAAAAAAAATTG+TGG | - | chr3.4:84277790-84277809 | None:intergenic | 10.0% |
| !! | AAAAATATTCCTAAAGAATT+TGG | + | chr3.4:84277803-84277822 | MS.gene013539:intron | 15.0% |
| !! | AAGATAAAATAAAGTCAAAT+TGG | + | chr3.4:84277161-84277180 | MS.gene013539:intron | 15.0% |
| !! | ATTAATCTATTTATCCAAAA+AGG | - | chr3.4:84277108-84277127 | None:intergenic | 15.0% |
| !! | TTAATCTATTTATCCAAAAA+GGG | - | chr3.4:84277107-84277126 | None:intergenic | 15.0% |
| !! | TTTCTATATATAATAGCATA+TGG | - | chr3.4:84279349-84279368 | None:intergenic | 15.0% |
| !!! | TATTTTCATAAGTTATTTTG+TGG | + | chr3.4:84277033-84277052 | MS.gene013539:intron | 15.0% |
| !!! | TCTTTTCTATTTAACTTTTT+TGG | + | chr3.4:84277990-84278009 | MS.gene013539:intron | 15.0% |
| !! | AAATATTACTACCTTTCTAA+TGG | - | chr3.4:84277567-84277586 | None:intergenic | 20.0% |
| !! | AATATTACTACCTTTCTAAT+GGG | - | chr3.4:84277566-84277585 | None:intergenic | 20.0% |
| !! | GTTAATTTATCATTACTTCT+TGG | + | chr3.4:84278363-84278382 | MS.gene013539:CDS | 20.0% |
| !! | TAAAAAAGGAAGAATGTAAT+AGG | - | chr3.4:84279283-84279302 | None:intergenic | 20.0% |
| !! | TAATTTGAGCTTATTTGTTT+GGG | - | chr3.4:84277295-84277314 | None:intergenic | 20.0% |
| !! | TGCTATTATATATAGAAACA+TGG | + | chr3.4:84279351-84279370 | MS.gene013539:CDS | 20.0% |
| !!! | CATCAAAAGCTTTATAAAAA+AGG | - | chr3.4:84279297-84279316 | None:intergenic | 20.0% |
| !!! | TTAATTTGAGCTTATTTGTT+TGG | - | chr3.4:84277296-84277315 | None:intergenic | 20.0% |
| !!! | TTCTAAAAAAAATTGTGGAA+GGG | - | chr3.4:84277785-84277804 | None:intergenic | 20.0% |
| !!! | TTTCTAAAAAAAATTGTGGA+AGG | - | chr3.4:84277786-84277805 | None:intergenic | 20.0% |
| !!! | TTTTATAAAGCTTTTGATGT+TGG | + | chr3.4:84279298-84279317 | MS.gene013539:CDS | 20.0% |
| ! | ATATTACTACCTTTCTAATG+GGG | - | chr3.4:84277565-84277584 | None:intergenic | 25.0% |
| ! | CAAATAGAACCAAATTCTTT+AGG | - | chr3.4:84277815-84277834 | None:intergenic | 25.0% |
| ! | TAATCACTTTACCTTGTATT+GGG | + | chr3.4:84276909-84276928 | MS.gene013539:intron | 25.0% |
| ! | TACAAATTAACTTATCCAAG+TGG | + | chr3.4:84277891-84277910 | MS.gene013539:CDS | 25.0% |
| !! | ATATAGAAACATGGCAATTT+TGG | + | chr3.4:84279360-84279379 | MS.gene013539:CDS | 25.0% |
| !! | TATAGAAACATGGCAATTTT+GGG | + | chr3.4:84279361-84279380 | MS.gene013539:CDS | 25.0% |
| !!! | ATTAATTTGTTTATCCAACC+AGG | - | chr3.4:84276936-84276955 | None:intergenic | 25.0% |
| !!! | ATTTTTTGCATTTGCTATAG+TGG | + | chr3.4:84279435-84279454 | MS.gene013539:CDS | 25.0% |
| !!! | CTAATAGCTAGTCTTATAAT+TGG | + | chr3.4:84276629-84276648 | MS.gene013539:CDS | 25.0% |
| AAATCCAGATGGTATTTACA+AGG | + | chr3.4:84279321-84279340 | MS.gene013539:CDS | 30.0% | |
| AAGTTTAAATCCTCTTAGCA+TGG | + | chr3.4:84277712-84277731 | MS.gene013539:intron | 30.0% | |
| AATCATCATCACATTGAAGA+GGG | + | chr3.4:84276539-84276558 | MS.gene013539:CDS | 30.0% | |
| AGAAAACATTCCTATATGGT+TGG | + | chr3.4:84278877-84278896 | MS.gene013539:CDS | 30.0% | |
| AGTTGTAGAACAAGAAACAA+AGG | - | chr3.4:84278216-84278235 | None:intergenic | 30.0% | |
| ATCCAATCCAAACAGATATT+TGG | + | chr3.4:84277315-84277334 | MS.gene013539:intron | 30.0% | |
| CAAGAGAAAACATTCCTATA+TGG | + | chr3.4:84278873-84278892 | MS.gene013539:CDS | 30.0% | |
| CTAAGTTTAGCTAGAATTGA+AGG | - | chr3.4:84278500-84278519 | None:intergenic | 30.0% | |
| CTAATCACTTTACCTTGTAT+TGG | + | chr3.4:84276908-84276927 | MS.gene013539:intron | 30.0% | |
| GAAATAAAAACCTGTAGCAA+GGG | - | chr3.4:84278571-84278590 | None:intergenic | 30.0% | |
| GATTTCAGTATGACTTATGT+TGG | + | chr3.4:84278315-84278334 | MS.gene013539:CDS | 30.0% | |
| TCAGTTTAGTGTTATCTCAA+GGG | + | chr3.4:84277686-84277705 | MS.gene013539:intron | 30.0% | |
| TGAACTTGTGTGATAATTGT+AGG | + | chr3.4:84277380-84277399 | MS.gene013539:intron | 30.0% | |
| TTAATGCATGATTTGAAGAC+TGG | + | chr3.4:84279181-84279200 | MS.gene013539:CDS | 30.0% | |
| TTCAAATGTTGCTCAAGAAT+TGG | + | chr3.4:84277652-84277671 | MS.gene013539:intron | 30.0% | |
| TTTATCTTTCGCTATAGCAA+TGG | - | chr3.4:84277149-84277168 | None:intergenic | 30.0% | |
| ! | AGACAAAAGAAGTACATACT+TGG | - | chr3.4:84277973-84277992 | None:intergenic | 30.0% |
| ! | TTCGTTCAATTTCCTACTTT+TGG | + | chr3.4:84278160-84278179 | MS.gene013539:CDS | 30.0% |
| !! | AAGATCCTTCTTTTTCATGT+TGG | - | chr3.4:84278668-84278687 | None:intergenic | 30.0% |
| !! | AATGGATTACATACTCCTAA+AGG | + | chr3.4:84277936-84277955 | MS.gene013539:CDS | 30.0% |
| !! | ATTTGCTATAGTGGCTAATT+TGG | + | chr3.4:84279444-84279463 | MS.gene013539:CDS | 30.0% |
| !! | GTTATTTTGTGGAAAGCTTA+TGG | + | chr3.4:84277044-84277063 | MS.gene013539:intron | 30.0% |
| !! | TTGGTTCTATTTGACTTGAA+TGG | + | chr3.4:84277822-84277841 | MS.gene013539:intron | 30.0% |
| !!! | TTTTGTTGGACTTTTAGCTT+TGG | + | chr3.4:84277538-84277557 | MS.gene013539:CDS | 30.0% |
| AACCTTTAACAAAGCGAGAA+TGG | - | chr3.4:84279689-84279708 | None:intergenic | 35.0% | |
| AACTGCACAAGTTTGAATGA+TGG | - | chr3.4:84276819-84276838 | None:intergenic | 35.0% | |
| AAGTAGCCACCAACTAAAAA+AGG | - | chr3.4:84279532-84279551 | None:intergenic | 35.0% | |
| AATAAGCTGAAAGCAGCTTA+CGG | + | chr3.4:84277068-84277087 | MS.gene013539:intron | 35.0% | |
| ACCATGGAGGAAACAAATAA+CGG | + | chr3.4:84276598-84276617 | MS.gene013539:CDS | 35.0% | |
| ACTTGTGTGATAATTGTAGG+TGG | + | chr3.4:84277383-84277402 | MS.gene013539:intron | 35.0% | |
| AGCTAAAAGTCCAACAAAAC+TGG | - | chr3.4:84277537-84277556 | None:intergenic | 35.0% | |
| AGGAAACAAATAACGGTTAG+AGG | + | chr3.4:84276605-84276624 | MS.gene013539:CDS | 35.0% | |
| AGTTGAATAGAATAGCACCA+TGG | + | chr3.4:84276582-84276601 | MS.gene013539:CDS | 35.0% | |
| ATCATGTGGCCTTTAATCAA+GGG | + | chr3.4:84278405-84278424 | MS.gene013539:CDS | 35.0% | |
| ATGAAACTCAATCTCACTAC+TGG | + | chr3.4:84276674-84276693 | MS.gene013539:CDS | 35.0% | |
| ATGAACATGGCCTATAACTA+CGG | + | chr3.4:84279049-84279068 | MS.gene013539:CDS | 35.0% | |
| ATGGCATATGCTGAACAAAA+AGG | + | chr3.4:84279591-84279610 | MS.gene013539:CDS | 35.0% | |
| ATTTCCATTGCCTTGATTCT+TGG | + | chr3.4:84278586-84278605 | MS.gene013539:CDS | 35.0% | |
| CAGCAGAAACATTGAGATTA+GGG | - | chr3.4:84276706-84276725 | None:intergenic | 35.0% | |
| CCTTTAATCAAGGGACTAAA+AGG | + | chr3.4:84278414-84278433 | MS.gene013539:CDS | 35.0% | |
| CTTTCTTCTTCATTGCTTCT+AGG | - | chr3.4:84276509-84276528 | None:intergenic | 35.0% | |
| GAATCATCATCACATTGAAG+AGG | + | chr3.4:84276538-84276557 | MS.gene013539:CDS | 35.0% | |
| GCGCTTTAATCAGTAACAAT+TGG | - | chr3.4:84278272-84278291 | None:intergenic | 35.0% | |
| GGAAATAAAAACCTGTAGCA+AGG | - | chr3.4:84278572-84278591 | None:intergenic | 35.0% | |
| GTATTCTCTTGTCTAGTGAA+TGG | - | chr3.4:84276797-84276816 | None:intergenic | 35.0% | |
| GTCAGTTTAGTGTTATCTCA+AGG | + | chr3.4:84277685-84277704 | MS.gene013539:intron | 35.0% | |
| GTTATAGGCCATGTTCATAT+CGG | - | chr3.4:84279047-84279066 | None:intergenic | 35.0% | |
| GTTGTAAAAGTTCTCGACTA+TGG | + | chr3.4:84278237-84278256 | MS.gene013539:intron | 35.0% | |
| GTTTCGTGTTTATTCGAAGT+TGG | + | chr3.4:84276735-84276754 | MS.gene013539:CDS | 35.0% | |
| TGCTCAAGAATTGGTGTATA+AGG | + | chr3.4:84277661-84277680 | MS.gene013539:intron | 35.0% | |
| TGGATTAACCGATATGAACA+TGG | + | chr3.4:84279036-84279055 | MS.gene013539:CDS | 35.0% | |
| TGGATTCGTGAAATTCTTCT+CGG | + | chr3.4:84278081-84278100 | MS.gene013539:CDS | 35.0% | |
| TGTTACGCCAAATATCTGTT+TGG | - | chr3.4:84277325-84277344 | None:intergenic | 35.0% | |
| TTTGATGTTGGAAATCCAGA+TGG | + | chr3.4:84279310-84279329 | MS.gene013539:CDS | 35.0% | |
| TTTGCCATTGATATGTGTGT+GGG | + | chr3.4:84279550-84279569 | MS.gene013539:CDS | 35.0% | |
| ! | ACATTGAATTGGACCCTTTT+TGG | + | chr3.4:84277091-84277110 | MS.gene013539:intron | 35.0% |
| ! | ATCCATTCTCGCTTTGTTAA+AGG | + | chr3.4:84279684-84279703 | MS.gene013539:CDS | 35.0% |
| ! | CAGTACGTTTAGAATCTGAA+TGG | - | chr3.4:84278741-84278760 | None:intergenic | 35.0% |
| ! | CATTTTACAACCATGCTAAG+AGG | - | chr3.4:84277725-84277744 | None:intergenic | 35.0% |
| ! | CCTTTTAGTCCCTTGATTAA+AGG | - | chr3.4:84278417-84278436 | None:intergenic | 35.0% |
| ! | GTGATAATTGTAGGTGGTTT+TGG | + | chr3.4:84277389-84277408 | MS.gene013539:intron | 35.0% |
| ! | TACTTTCTGGTATACTAGCA+GGG | - | chr3.4:84278449-84278468 | None:intergenic | 35.0% |
| !! | CTATTTGTGACCAGTTTTGT+TGG | + | chr3.4:84277524-84277543 | MS.gene013539:CDS | 35.0% |
| !! | GTTTTGGATCTTACCTATTG+GGG | + | chr3.4:84277405-84277424 | MS.gene013539:CDS | 35.0% |
| !!! | GGTTTTGGATCTTACCTATT+GGG | + | chr3.4:84277404-84277423 | MS.gene013539:CDS | 35.0% |
| !!! | TGGTTTTGGATCTTACCTAT+TGG | + | chr3.4:84277403-84277422 | MS.gene013539:CDS | 35.0% |
| AACAAAGCGAGAATGGATGA+AGG | - | chr3.4:84279682-84279701 | None:intergenic | 40.0% | |
| AAGAAGCTCATGCATATTGG+GGG | - | chr3.4:84279715-84279734 | None:intergenic | 40.0% | |
| ACCGTTATTTGTTTCCTCCA+TGG | - | chr3.4:84276602-84276621 | None:intergenic | 40.0% | |
| ACGAAATACCACTTCACTTG+AGG | - | chr3.4:84278962-84278981 | None:intergenic | 40.0% | |
| ACTAGTTCAACTTCTTTCCC+AGG | + | chr3.4:84278047-84278066 | MS.gene013539:intron | 40.0% | |
| AGTATGACTTATGTTGGAGC+AGG | + | chr3.4:84278321-84278340 | MS.gene013539:CDS | 40.0% | |
| ATCTTGGCCCACAAAAAGTT+GGG | + | chr3.4:84279473-84279492 | MS.gene013539:CDS | 40.0% | |
| ATGCTGAACAAAAAGGAAGC+TGG | + | chr3.4:84279598-84279617 | MS.gene013539:CDS | 40.0% | |
| ATGCTTGTAAGCCAAGCAAT+TGG | + | chr3.4:84279232-84279251 | MS.gene013539:CDS | 40.0% | |
| ATTGCCTTGATTCTTGGTGA+CGG | + | chr3.4:84278592-84278611 | MS.gene013539:CDS | 40.0% | |
| ATTTCCATAAGCTCACTCTC+TGG | - | chr3.4:84277223-84277242 | None:intergenic | 40.0% | |
| CAAGCAATTGGAACAGCAAT+AGG | + | chr3.4:84279244-84279263 | MS.gene013539:CDS | 40.0% | |
| CACAATTGCAAGCAATGATC+TGG | - | chr3.4:84279409-84279428 | None:intergenic | 40.0% | |
| CATCATGTGGCCTTTAATCA+AGG | + | chr3.4:84278404-84278423 | MS.gene013539:CDS | 40.0% | |
| CATGCTTGCAATCCAAAAGT+AGG | - | chr3.4:84278175-84278194 | None:intergenic | 40.0% | |
| CATGTTGGCATGGATATTTG+TGG | - | chr3.4:84278653-84278672 | None:intergenic | 40.0% | |
| CATTGCTTGCAATTGTGTTG+TGG | + | chr3.4:84279412-84279431 | MS.gene013539:CDS | 40.0% | |
| CCATGCCAACATGAAAAAGA+AGG | + | chr3.4:84278660-84278679 | MS.gene013539:CDS | 40.0% | |
| CGAAATACCACTTCACTTGA+GGG | - | chr3.4:84278961-84278980 | None:intergenic | 40.0% | |
| CGCCAAATATCTGTTTGGAT+TGG | - | chr3.4:84277320-84277339 | None:intergenic | 40.0% | |
| CTATATGGTTGGCATGTACA+GGG | + | chr3.4:84278888-84278907 | MS.gene013539:CDS | 40.0% | |
| CTTACCTATTGGGGTTGAAT+AGG | + | chr3.4:84277414-84277433 | MS.gene013539:CDS | 40.0% | |
| CTTTGCCATTGATATGTGTG+TGG | + | chr3.4:84279549-84279568 | MS.gene013539:CDS | 40.0% | |
| GAAGAAGCTCATGCATATTG+GGG | - | chr3.4:84279716-84279735 | None:intergenic | 40.0% | |
| GAATCCACAATTATCTCCAC+CGG | - | chr3.4:84278143-84278162 | None:intergenic | 40.0% | |
| GAATCTGAATGGAATCCTCA+AGG | - | chr3.4:84278730-84278749 | None:intergenic | 40.0% | |
| GAGGAGTCTCAATGGTTATA+AGG | + | chr3.4:84278473-84278492 | MS.gene013539:CDS | 40.0% | |
| GCAGCAGAAACATTGAGATT+AGG | - | chr3.4:84276707-84276726 | None:intergenic | 40.0% | |
| GCTAATTTGGTCAGAGATCT+TGG | + | chr3.4:84279457-84279476 | MS.gene013539:CDS | 40.0% | |
| GCTACTGCTGTTCTCATTAA+TGG | + | chr3.4:84277918-84277937 | MS.gene013539:CDS | 40.0% | |
| GGAAGAAGCTCATGCATATT+GGG | - | chr3.4:84279717-84279736 | None:intergenic | 40.0% | |
| GTATACCAGAAAGTAGCATG+AGG | + | chr3.4:84278454-84278473 | MS.gene013539:CDS | 40.0% | |
| GTGCAAAGATATACGCAAAC+AGG | - | chr3.4:84278985-84279004 | None:intergenic | 40.0% | |
| TACTCCTAAAGGAGATGTGA+TGG | + | chr3.4:84277947-84277966 | MS.gene013539:CDS | 40.0% | |
| TCAAGGGACTAAAAGGAGAA+TGG | + | chr3.4:84278421-84278440 | MS.gene013539:CDS | 40.0% | |
| TGAACATGGCCTATAACTAC+GGG | + | chr3.4:84279050-84279069 | MS.gene013539:CDS | 40.0% | |
| TGAATAGAATAGCACCATGG+AGG | + | chr3.4:84276585-84276604 | MS.gene013539:CDS | 40.0% | |
| TTCACTTGAGGGAACATCAA+CGG | - | chr3.4:84278950-84278969 | None:intergenic | 40.0% | |
| TTCTTTCAGTGGTTCTTCAC+CGG | + | chr3.4:84278121-84278140 | MS.gene013539:CDS | 40.0% | |
| TTGTTTGGGCATTCTTTCAG+TGG | + | chr3.4:84278110-84278129 | MS.gene013539:CDS | 40.0% | |
| TTTCCATAAGCTCACTCTCT+GGG | - | chr3.4:84277222-84277241 | None:intergenic | 40.0% | |
| ! | AAAAGTGATGGTGTAGTTGC+TGG | + | chr3.4:84279109-84279128 | MS.gene013539:CDS | 40.0% |
| ! | AATGTTTCTGCTGCTCTACT+TGG | + | chr3.4:84276713-84276732 | MS.gene013539:CDS | 40.0% |
| ! | AGCTACTTTCCCGTAGTTAT+AGG | - | chr3.4:84279062-84279081 | None:intergenic | 40.0% |
| ! | ATCCACTTCCCAACTTTTTG+TGG | - | chr3.4:84279484-84279503 | None:intergenic | 40.0% |
| ! | CTACTTTCTGGTATACTAGC+AGG | - | chr3.4:84278450-84278469 | None:intergenic | 40.0% |
| ! | CTATTGCTGTTCCAATTGCT+TGG | - | chr3.4:84279246-84279265 | None:intergenic | 40.0% |
| ! | TCCACTTCCCAACTTTTTGT+GGG | - | chr3.4:84279483-84279502 | None:intergenic | 40.0% |
| ! | TTTCGTCTGAGATCATCAAG+AGG | - | chr3.4:84278842-84278861 | None:intergenic | 40.0% |
| !! | AAACATGGCAATTTTGGGTG+TGG | + | chr3.4:84279366-84279385 | MS.gene013539:CDS | 40.0% |
| !! | ATCATTACTTCTTGGTGCTG+TGG | + | chr3.4:84278371-84278390 | MS.gene013539:CDS | 40.0% |
| !! | CAAAAAGGAAGCTGGTTTGA+TGG | + | chr3.4:84279606-84279625 | MS.gene013539:CDS | 40.0% |
| !! | CCTTCTTTTTCATGTTGGCA+TGG | - | chr3.4:84278663-84278682 | None:intergenic | 40.0% |
| !! | CTACTTTTGGATTGCAAGCA+TGG | + | chr3.4:84278173-84278192 | MS.gene013539:CDS | 40.0% |
| !! | GACTTGAATGGTGTTGATGA+TGG | + | chr3.4:84277834-84277853 | MS.gene013539:intron | 40.0% |
| !! | GTTGCTTCTGGTTTGATTTG+TGG | + | chr3.4:84279637-84279656 | MS.gene013539:CDS | 40.0% |
| !! | TATCGTTTTTCCTGTCCTTG+AGG | + | chr3.4:84278712-84278731 | MS.gene013539:intron | 40.0% |
| !! | TCATTGCTTCTAGGATCCAT+TGG | - | chr3.4:84276500-84276519 | None:intergenic | 40.0% |
| !! | TCTGGTTTGATTTGTGGAGA+TGG | + | chr3.4:84279643-84279662 | MS.gene013539:CDS | 40.0% |
| !! | TGATTTGTGGAGATGGATTG+TGG | + | chr3.4:84279650-84279669 | MS.gene013539:CDS | 40.0% |
| !!! | ACCATCACTTTTTCCAGCTA+AGG | - | chr3.4:84279101-84279120 | None:intergenic | 40.0% |
| !!! | ATGGCTGTGCCTTTTTTAGT+TGG | + | chr3.4:84279520-84279539 | MS.gene013539:CDS | 40.0% |
| !!! | CTTCTCGGCAAGTTTTGTTT+GGG | + | chr3.4:84278096-84278115 | MS.gene013539:CDS | 40.0% |
| !!! | TCTTCTCGGCAAGTTTTGTT+TGG | + | chr3.4:84278095-84278114 | MS.gene013539:CDS | 40.0% |
| AAGCAGGGATTGATACACCA+GGG | + | chr3.4:84277450-84277469 | MS.gene013539:CDS | 45.0% | |
| AATCCATGAACCTGCTTCCT+GGG | - | chr3.4:84278067-84278086 | None:intergenic | 45.0% | |
| ACCTATTGGGGTTGAATAGG+AGG | + | chr3.4:84277417-84277436 | MS.gene013539:CDS | 45.0% | |
| ACTGCCCACACACATATCAA+TGG | - | chr3.4:84279557-84279576 | None:intergenic | 45.0% | |
| AGTAGCATGAGGAGTCTCAA+TGG | + | chr3.4:84278465-84278484 | MS.gene013539:CDS | 45.0% | |
| ATCAAACCAGAAGCAACTGC+AGG | - | chr3.4:84279634-84279653 | None:intergenic | 45.0% | |
| CAGATTGTATCCCTTGCTAC+AGG | + | chr3.4:84278558-84278577 | MS.gene013539:intron | 45.0% | |
| CCTATATGGTTGGCATGTAC+AGG | + | chr3.4:84278887-84278906 | MS.gene013539:CDS | 45.0% | |
| CCTGTACATGCCAACCATAT+AGG | - | chr3.4:84278890-84278909 | None:intergenic | 45.0% | |
| CTCGGTTTCTGCAATGCTTA+TGG | + | chr3.4:84279010-84279029 | MS.gene013539:CDS | 45.0% | |
| CTGAGATCATCAAGAGGCAA+CGG | - | chr3.4:84278836-84278855 | None:intergenic | 45.0% | |
| CTTTACCTTGTATTGGGTCC+TGG | + | chr3.4:84276915-84276934 | MS.gene013539:intron | 45.0% | |
| GAATACTCCTGGTAGTACCA+AGG | + | chr3.4:84277472-84277491 | MS.gene013539:CDS | 45.0% | |
| GATCTTGGCCCACAAAAAGT+TGG | + | chr3.4:84279472-84279491 | MS.gene013539:CDS | 45.0% | |
| GATTCCACTTCCAATGGCTA+TGG | + | chr3.4:84279501-84279520 | MS.gene013539:CDS | 45.0% | |
| GCAGCTTACGGACATTGAAT+TGG | + | chr3.4:84277080-84277099 | MS.gene013539:intron | 45.0% | |
| GCAGTTTGGTTGTGTTTGCA+TGG | + | chr3.4:84279572-84279591 | MS.gene013539:CDS | 45.0% | |
| GCCTTAGCTGGAAAAAGTGA+TGG | + | chr3.4:84279097-84279116 | MS.gene013539:CDS | 45.0% | |
| GGAGGAATCTGTGAATCCAA+TGG | + | chr3.4:84276481-84276500 | MS.gene013539:CDS | 45.0% | |
| GGGAAGAAGCTCATGCATAT+TGG | - | chr3.4:84279718-84279737 | None:intergenic | 45.0% | |
| GTCACCAAGAATCAAGGCAA+TGG | - | chr3.4:84278593-84278612 | None:intergenic | 45.0% | |
| GTGTAGTTGCTGGACTTGTA+GGG | + | chr3.4:84279119-84279138 | MS.gene013539:CDS | 45.0% | |
| TATATCTTTGCACCCTCGCT+CGG | + | chr3.4:84278992-84279011 | MS.gene013539:CDS | 45.0% | |
| TCACATTGAAGAGGGTCAAG+TGG | + | chr3.4:84276547-84276566 | MS.gene013539:CDS | 45.0% | |
| TCACTTGAGGGAACATCAAC+GGG | - | chr3.4:84278949-84278968 | None:intergenic | 45.0% | |
| TCCTCCTATTCAACCCCAAT+AGG | - | chr3.4:84277421-84277440 | None:intergenic | 45.0% | |
| TGAATGGAATCCTCAAGGAC+AGG | - | chr3.4:84278725-84278744 | None:intergenic | 45.0% | |
| TGATATGTGTGTGGGCAGTT+TGG | + | chr3.4:84279558-84279577 | MS.gene013539:CDS | 45.0% | |
| TGATGTTCCCTCAAGTGAAG+TGG | + | chr3.4:84278951-84278970 | MS.gene013539:CDS | 45.0% | |
| TTCACCGGTGGAGATAATTG+TGG | + | chr3.4:84278136-84278155 | MS.gene013539:CDS | 45.0% | |
| TTCTGCAATGCTTATGGTGC+TGG | + | chr3.4:84279016-84279035 | MS.gene013539:CDS | 45.0% | |
| TTGGCCATCACATCTCCTTT+AGG | - | chr3.4:84277954-84277973 | None:intergenic | 45.0% | |
| ! | AGCTTTGGTCCCCATTAGAA+AGG | + | chr3.4:84277553-84277572 | MS.gene013539:CDS | 45.0% |
| ! | GAAGTGGATTCCACTTCCAA+TGG | + | chr3.4:84279495-84279514 | MS.gene013539:CDS | 45.0% |
| ! | GATTGGTTCAATCACAGTGG+AGG | + | chr3.4:84276463-84276482 | MS.gene013539:CDS | 45.0% |
| ! | GGAGCCTTGTAAATACCATC+TGG | - | chr3.4:84279328-84279347 | None:intergenic | 45.0% |
| ! | TTGCCTTGATTCTTGGTGAC+GGG | + | chr3.4:84278593-84278612 | MS.gene013539:CDS | 45.0% |
| !! | AGACTCCTCATGCTACTTTC+TGG | - | chr3.4:84278462-84278481 | None:intergenic | 45.0% |
| !! | ATGGCAATTTTGGGTGTGGA+AGG | + | chr3.4:84279370-84279389 | MS.gene013539:CDS | 45.0% |
| !! | TCTTGGTGCTGTGGTTTCTT+GGG | + | chr3.4:84278380-84278399 | MS.gene013539:CDS | 45.0% |
| !! | TTCTTGGTGCTGTGGTTTCT+TGG | + | chr3.4:84278379-84278398 | MS.gene013539:CDS | 45.0% |
| !!! | GCTGTGCCTTTTTTAGTTGG+TGG | + | chr3.4:84279523-84279542 | MS.gene013539:CDS | 45.0% |
| !!! | TTTTTTGCCACTGCAGTCTC+CGG | + | chr3.4:84278800-84278819 | MS.gene013539:intron | 45.0% |
| !!! | TTTAATTTAATGAATTTTTT+AGG | + | chr3.4:84278017-84278036 | MS.gene013539:intron | 5.0% |
| AAGCCCGTCACCAAGAATCA+AGG | - | chr3.4:84278599-84278618 | None:intergenic | 50.0% | |
| ACAGCAGTAGCAGTTCCACT+TGG | - | chr3.4:84277909-84277928 | None:intergenic | 50.0% | |
| ACAGCCATAGCCATTGGAAG+TGG | - | chr3.4:84279508-84279527 | None:intergenic | 50.0% | |
| ACCTTGTATTGGGTCCTGGT+TGG | + | chr3.4:84276919-84276938 | MS.gene013539:intron | 50.0% | |
| AGGAGGACTTATGAGCAAGC+AGG | + | chr3.4:84277434-84277453 | MS.gene013539:CDS | 50.0% | |
| AGTACCAAGGAGCCTGCAAT+TGG | + | chr3.4:84277485-84277504 | MS.gene013539:CDS | 50.0% | |
| ATGGTTCCTGCAGTTGCTTC+TGG | + | chr3.4:84279625-84279644 | MS.gene013539:CDS | 50.0% | |
| CAACTTCTTTCCCAGGAAGC+AGG | + | chr3.4:84278054-84278073 | MS.gene013539:intron | 50.0% | |
| CAAGCAGGGATTGATACACC+AGG | + | chr3.4:84277449-84277468 | MS.gene013539:CDS | 50.0% | |
| CATCAAGAGGCAACGGTTTC+TGG | - | chr3.4:84278829-84278848 | None:intergenic | 50.0% | |
| GAATCCATGAACCTGCTTCC+TGG | - | chr3.4:84278068-84278087 | None:intergenic | 50.0% | |
| GATACACCAGGGAATACTCC+TGG | + | chr3.4:84277461-84277480 | MS.gene013539:CDS | 50.0% | |
| GCATGAGCTTCTTCCCAACT+AGG | + | chr3.4:84279722-84279741 | MS.gene013539:CDS | 50.0% | |
| GCCCACAAAAAGTTGGGAAG+TGG | + | chr3.4:84279479-84279498 | MS.gene013539:CDS | 50.0% | |
| GCTGTCATCCAACCAATTGC+AGG | - | chr3.4:84277500-84277519 | None:intergenic | 50.0% | |
| GGAGGACTTATGAGCAAGCA+GGG | + | chr3.4:84277435-84277454 | MS.gene013539:CDS | 50.0% | |
| GGTGTAGTTGCTGGACTTGT+AGG | + | chr3.4:84279118-84279137 | MS.gene013539:CDS | 50.0% | |
| TAGCCCAGAGAGTGAGCTTA+TGG | + | chr3.4:84277216-84277235 | MS.gene013539:intron | 50.0% | |
| TCCAACCAGGACCCAATACA+AGG | - | chr3.4:84276923-84276942 | None:intergenic | 50.0% | |
| TGAAGAGGGTCAAGTGGCTT+TGG | + | chr3.4:84276553-84276572 | MS.gene013539:CDS | 50.0% | |
| TGCTATAGCATCGCTGTAGG+AGG | + | chr3.4:84276842-84276861 | MS.gene013539:CDS | 50.0% | |
| TTTCAGTGGTTCTTCACCGG+TGG | + | chr3.4:84278124-84278143 | MS.gene013539:CDS | 50.0% | |
| TTTCCCAGGAAGCAGGTTCA+TGG | + | chr3.4:84278061-84278080 | MS.gene013539:intron | 50.0% | |
| TTTGTGCTTGCAGCCTTAGC+TGG | + | chr3.4:84279085-84279104 | MS.gene013539:CDS | 50.0% | |
| ! | AAAGGCACAGCCATAGCCAT+TGG | - | chr3.4:84279514-84279533 | None:intergenic | 50.0% |
| ! | TGGTTTCTTGGGGCATCATG+TGG | + | chr3.4:84278391-84278410 | MS.gene013539:CDS | 50.0% |
| !! | AGGCAACGGTTTCTGGTTAC+CGG | - | chr3.4:84278822-84278841 | None:intergenic | 50.0% |
| !! | CTTGGTGCTGTGGTTTCTTG+GGG | + | chr3.4:84278381-84278400 | MS.gene013539:CDS | 50.0% |
| !! | GCTTGCTATAGCATCGCTGT+AGG | + | chr3.4:84276839-84276858 | MS.gene013539:CDS | 50.0% |
| !! | GTACTACCAGGAGTATTCCC+TGG | - | chr3.4:84277470-84277489 | None:intergenic | 50.0% |
| !! | TGGCTTACAAGCATCGAACG+CGG | - | chr3.4:84279226-84279245 | None:intergenic | 50.0% |
| AGCATTGCAGAAACCGAGCG+AGG | - | chr3.4:84279008-84279027 | None:intergenic | 55.0% | |
| CCAACCAATTGCAGGCTCCT+TGG | - | chr3.4:84277492-84277511 | None:intergenic | 55.0% | |
| CCAAGGAGCCTGCAATTGGT+TGG | + | chr3.4:84277489-84277508 | MS.gene013539:CDS | 55.0% | |
| GCATTGCAGAAACCGAGCGA+GGG | - | chr3.4:84279007-84279026 | None:intergenic | 55.0% | |
| GTTGCTGGACTTGTAGGGTG+TGG | + | chr3.4:84279124-84279143 | MS.gene013539:CDS | 55.0% | |
| CATCGAACGCGGCGAAGTCA+GGG | - | chr3.4:84279215-84279234 | None:intergenic | 60.0% | |
| CTGGTTACCGGAGACTGCAG+TGG | - | chr3.4:84278810-84278829 | None:intergenic | 60.0% | |
| GCAGGCTCCTTGGTACTACC+AGG | - | chr3.4:84277482-84277501 | None:intergenic | 60.0% | |
| GCATCGAACGCGGCGAAGTC+AGG | - | chr3.4:84279216-84279235 | None:intergenic | 65.0% | |
| GCGGCGAAGTCAGGGTGAGA+TGG | - | chr3.4:84279207-84279226 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 84276461 | 84279747 | 84276461 | ID=MS.gene013539 |
| chr3.4 | mRNA | 84276461 | 84279747 | 84276461 | ID=MS.gene013539.t1;Parent=MS.gene013539 |
| chr3.4 | exon | 84276461 | 84276863 | 84276461 | ID=MS.gene013539.t1.exon1;Parent=MS.gene013539.t1 |
| chr3.4 | CDS | 84276461 | 84276863 | 84276461 | ID=cds.MS.gene013539.t1;Parent=MS.gene013539.t1 |
| chr3.4 | exon | 84277402 | 84277574 | 84277402 | ID=MS.gene013539.t1.exon2;Parent=MS.gene013539.t1 |
| chr3.4 | CDS | 84277402 | 84277574 | 84277402 | ID=cds.MS.gene013539.t1;Parent=MS.gene013539.t1 |
| chr3.4 | exon | 84277876 | 84277973 | 84277876 | ID=MS.gene013539.t1.exon3;Parent=MS.gene013539.t1 |
| chr3.4 | CDS | 84277876 | 84277973 | 84277876 | ID=cds.MS.gene013539.t1;Parent=MS.gene013539.t1 |
| chr3.4 | exon | 84278069 | 84278203 | 84278069 | ID=MS.gene013539.t1.exon4;Parent=MS.gene013539.t1 |
| chr3.4 | CDS | 84278069 | 84278203 | 84278069 | ID=cds.MS.gene013539.t1;Parent=MS.gene013539.t1 |
| chr3.4 | exon | 84278305 | 84278494 | 84278305 | ID=MS.gene013539.t1.exon5;Parent=MS.gene013539.t1 |
| chr3.4 | CDS | 84278305 | 84278494 | 84278305 | ID=cds.MS.gene013539.t1;Parent=MS.gene013539.t1 |
| chr3.4 | exon | 84278580 | 84278694 | 84278580 | ID=MS.gene013539.t1.exon6;Parent=MS.gene013539.t1 |
| chr3.4 | CDS | 84278580 | 84278694 | 84278580 | ID=cds.MS.gene013539.t1;Parent=MS.gene013539.t1 |
| chr3.4 | exon | 84278816 | 84279747 | 84278816 | ID=MS.gene013539.t1.exon7;Parent=MS.gene013539.t1 |
| chr3.4 | CDS | 84278816 | 84279747 | 84278816 | ID=cds.MS.gene013539.t1;Parent=MS.gene013539.t1 |
| Gene Sequence |
| Protein sequence |
