Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86821.t1 | XP_013468866.1 | 99 | 680 | 7 | 0 | 1 | 680 | 1 | 680 | 0.00E+00 | 1357.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86821.t1 | Q6R3L0 | 73.3 | 636 | 167 | 1 | 45 | 680 | 41 | 673 | 1.1e-284 | 980.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86821.t1 | A0A072VND8 | 99.0 | 680 | 7 | 0 | 1 | 680 | 1 | 680 | 0.0e+00 | 1357.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059868 | MS.gene86821 | 0.806767 | 7.01E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene95674 | MS.gene86821 | PPI |
| MS.gene86821 | MS.gene33454 | PPI |
| MS.gene013539 | MS.gene86821 | PPI |
| MS.gene86821 | MS.gene06650 | PPI |
| MS.gene86821 | MS.gene069003 | PPI |
| MS.gene86821 | MS.gene33707 | PPI |
| MS.gene86821 | MS.gene99504 | PPI |
| MS.gene86821 | MS.gene052792 | PPI |
| MS.gene86821 | MS.gene06864 | PPI |
| MS.gene93375 | MS.gene86821 | PPI |
| MS.gene86821 | MS.gene071032 | PPI |
| MS.gene86821 | MS.gene057201 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86821.t1 | MTR_1g077840 | 98.971 | 680 | 7 | 0 | 1 | 680 | 1 | 680 | 0.0 | 1387 |
| MS.gene86821.t1 | MTR_3g092090 | 64.812 | 665 | 231 | 2 | 17 | 680 | 4 | 666 | 0.0 | 919 |
| MS.gene86821.t1 | MTR_3g092090 | 64.931 | 653 | 226 | 2 | 17 | 668 | 4 | 654 | 0.0 | 903 |
| MS.gene86821.t1 | MTR_1g007580 | 62.704 | 673 | 242 | 5 | 11 | 680 | 6 | 672 | 0.0 | 875 |
| MS.gene86821.t1 | MTR_0312s0020 | 61.934 | 662 | 247 | 4 | 23 | 680 | 12 | 672 | 0.0 | 863 |
| MS.gene86821.t1 | MTR_1g007540 | 61.934 | 662 | 247 | 4 | 23 | 680 | 12 | 672 | 0.0 | 863 |
| MS.gene86821.t1 | MTR_7g028250 | 53.365 | 639 | 289 | 5 | 46 | 677 | 37 | 673 | 0.0 | 727 |
| MS.gene86821.t1 | MTR_6g077870 | 51.638 | 641 | 295 | 7 | 47 | 679 | 66 | 699 | 0.0 | 710 |
| MS.gene86821.t1 | MTR_5g091600 | 51.124 | 667 | 313 | 7 | 22 | 679 | 7 | 669 | 0.0 | 704 |
| MS.gene86821.t1 | MTR_3g063490 | 52.895 | 639 | 292 | 5 | 47 | 679 | 48 | 683 | 0.0 | 697 |
| MS.gene86821.t1 | MTR_3g063520 | 52.269 | 639 | 296 | 5 | 47 | 679 | 42 | 677 | 0.0 | 674 |
| MS.gene86821.t1 | MTR_6g077870 | 51.215 | 535 | 252 | 6 | 153 | 679 | 5 | 538 | 0.0 | 594 |
| MS.gene86821.t1 | MTR_1626s0010 | 61.277 | 235 | 91 | 0 | 224 | 458 | 1 | 235 | 1.11e-102 | 313 |
| MS.gene86821.t1 | MTR_5g091615 | 56.291 | 151 | 65 | 1 | 530 | 679 | 59 | 209 | 1.14e-50 | 178 |
| MS.gene86821.t1 | MTR_0312s0050 | 74.699 | 83 | 21 | 0 | 47 | 129 | 38 | 120 | 1.56e-38 | 139 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86821.t1 | AT4G24120 | 70.765 | 667 | 190 | 2 | 16 | 680 | 10 | 673 | 0.0 | 999 |
| MS.gene86821.t1 | AT5G53550 | 64.468 | 667 | 231 | 4 | 16 | 680 | 9 | 671 | 0.0 | 910 |
| MS.gene86821.t1 | AT5G53550 | 64.468 | 667 | 231 | 4 | 16 | 680 | 9 | 671 | 0.0 | 910 |
| MS.gene86821.t1 | AT5G53550 | 64.468 | 667 | 231 | 4 | 16 | 680 | 9 | 671 | 0.0 | 910 |
| MS.gene86821.t1 | AT5G53550 | 64.468 | 667 | 231 | 4 | 16 | 680 | 9 | 671 | 0.0 | 910 |
| MS.gene86821.t1 | AT5G53550 | 64.468 | 667 | 231 | 4 | 16 | 680 | 9 | 671 | 0.0 | 910 |
| MS.gene86821.t1 | AT5G24380 | 63.664 | 666 | 230 | 4 | 20 | 680 | 5 | 663 | 0.0 | 903 |
| MS.gene86821.t1 | AT1G65730 | 52.500 | 680 | 298 | 9 | 19 | 679 | 1 | 674 | 0.0 | 732 |
| MS.gene86821.t1 | AT5G41000 | 51.791 | 670 | 315 | 4 | 18 | 680 | 2 | 670 | 0.0 | 721 |
| MS.gene86821.t1 | AT3G27020 | 51.194 | 670 | 312 | 6 | 20 | 677 | 4 | 670 | 0.0 | 721 |
| MS.gene86821.t1 | AT5G53550 | 64.775 | 511 | 177 | 2 | 171 | 680 | 1 | 509 | 0.0 | 713 |
| MS.gene86821.t1 | AT1G48370 | 52.055 | 657 | 294 | 7 | 40 | 680 | 59 | 710 | 0.0 | 684 |
| MS.gene86821.t1 | AT5G41000 | 50.526 | 665 | 306 | 4 | 18 | 680 | 2 | 645 | 0.0 | 683 |
| MS.gene86821.t1 | AT3G17650 | 50.381 | 657 | 306 | 7 | 39 | 680 | 49 | 700 | 0.0 | 674 |
| MS.gene86821.t1 | AT3G17650 | 50.381 | 657 | 306 | 7 | 39 | 680 | 49 | 700 | 0.0 | 674 |
| MS.gene86821.t1 | AT1G48370 | 52.134 | 539 | 244 | 5 | 156 | 680 | 9 | 547 | 0.0 | 568 |
| MS.gene86821.t1 | AT5G41000 | 51.515 | 495 | 232 | 4 | 193 | 680 | 1 | 494 | 0.0 | 534 |
| MS.gene86821.t1 | AT5G45450 | 48.077 | 208 | 101 | 2 | 474 | 680 | 1 | 202 | 6.54e-65 | 214 |
Find 152 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTCATGGCCGTACCGTTTC+TGG | 0.148320 | 1.1:+58284081 | MS.gene86821:CDS |
| CTCGCATTCTGCAATGCTTT+TGG | 0.175738 | 1.1:+58283575 | MS.gene86821:CDS |
| CATTGCTTGCAACTTTGTTT+TGG | 0.185014 | 1.1:+58283977 | MS.gene86821:CDS |
| AGAATGTTTGAGCTTGTTTA+AGG | 0.190142 | 1.1:-58283415 | None:intergenic |
| CTAAACATCAACATGGAATT+TGG | 0.220436 | 1.1:+58281258 | MS.gene86821:CDS |
| ATGGTTCCAGCAATTGCTTC+TGG | 0.222492 | 1.1:+58284190 | MS.gene86821:CDS |
| AACCATCAACTCTGCTTTCT+TGG | 0.226520 | 1.1:-58284173 | None:intergenic |
| CTTGGAGCTGTGCTCTCTTA+TGG | 0.235520 | 1.1:+58283033 | MS.gene86821:CDS |
| CAAGAGCAAGAACCATAAAA+AGG | 0.240574 | 1.1:+58283239 | MS.gene86821:CDS |
| GCAGCAGAGACATTCAAATT+TGG | 0.267639 | 1.1:-58281477 | None:intergenic |
| TTGATCGGCGTAAAGGAAAT+TGG | 0.270852 | 1.1:+58283073 | MS.gene86821:CDS |
| GAAGGGTTTATATGGTTATA+AGG | 0.272710 | 1.1:+58283125 | MS.gene86821:CDS |
| CCTGCATTTGGTTGGATGTC+TGG | 0.275545 | 1.1:+58282093 | MS.gene86821:CDS |
| AATTCCATGTTGATGTTTAG+TGG | 0.292963 | 1.1:-58281255 | None:intergenic |
| ACTAACATGAAGGGTTTATA+TGG | 0.306840 | 1.1:+58283117 | MS.gene86821:CDS |
| ACAGAAACATGGCAGTTATA+GGG | 0.308924 | 1.1:+58283927 | MS.gene86821:CDS |
| TCACACACAGGATGATAAAA+TGG | 0.314433 | 1.1:+58282591 | MS.gene86821:CDS |
| TTTGAACAGTTTCCAACCTT+TGG | 0.315680 | 1.1:+58282813 | MS.gene86821:CDS |
| CTGTCCAATGTTCATCAGAT+TGG | 0.320759 | 1.1:-58281359 | None:intergenic |
| ATTATTTCAGCTCCTATAAC+TGG | 0.321331 | 1.1:-58281336 | None:intergenic |
| TACAGAAACATGGCAGTTAT+AGG | 0.321915 | 1.1:+58283926 | MS.gene86821:CDS |
| CAACAAAGCAAACAACAAAA+AGG | 0.327369 | 1.1:-58282119 | None:intergenic |
| CTCCAAGAAAGCAGAGTTGA+TGG | 0.329189 | 1.1:+58284171 | MS.gene86821:CDS |
| CAACCTTTGGATTGCAAGCT+TGG | 0.329374 | 1.1:+58282826 | MS.gene86821:CDS |
| ATTATATGCCATGTTTATAT+CGG | 0.361843 | 1.1:-58283609 | None:intergenic |
| ATAAACATGGCATATAATTA+CGG | 0.369510 | 1.1:+58283614 | MS.gene86821:CDS |
| GAGGAAAGGTTGCCAGTTAT+AGG | 0.369530 | 1.1:+58281324 | MS.gene86821:CDS |
| TTTCTGTAAATTAGCGCATA+AGG | 0.374435 | 1.1:-58283911 | None:intergenic |
| GGTGTAGTGGCAGCACTTGT+TGG | 0.376653 | 1.1:+58283683 | MS.gene86821:CDS |
| TGGATCGGGGTGGTTGGATA+TGG | 0.377446 | 1.1:+58283458 | MS.gene86821:CDS |
| TTGGAACCATTCCTGTTGTA+AGG | 0.381075 | 1.1:-58281458 | None:intergenic |
| CATCAAATGCCTTGTAGAAC+AGG | 0.386991 | 1.1:-58283859 | None:intergenic |
| TTGCTTCTGGACTAATTTGC+GGG | 0.390184 | 1.1:+58284203 | MS.gene86821:CDS |
| GTGAACTTGTCTCTGCTCCT+TGG | 0.393687 | 1.1:+58283015 | MS.gene86821:CDS |
| GCATGTTTCCTCAGCTGAAA+TGG | 0.394853 | 1.1:+58283516 | MS.gene86821:CDS |
| CTATCAATTGCTCTAATCCT+TGG | 0.398456 | 1.1:+58283153 | MS.gene86821:CDS |
| CATATCTGTTGGGATTAAAC+AGG | 0.406006 | 1.1:+58282010 | MS.gene86821:CDS |
| TCTTATGGGGTTTCTTTAAG+TGG | 0.406690 | 1.1:+58282763 | MS.gene86821:CDS |
| AGAGCATTCCAATGTGGATC+GGG | 0.410494 | 1.1:+58283444 | MS.gene86821:CDS |
| GCAACAGCGGTTCTCATCAA+TGG | 0.410553 | 1.1:+58282565 | MS.gene86821:CDS |
| TGCTATAGCATTGCTGTTAG+CGG | 0.415612 | 1.1:+58281615 | MS.gene86821:CDS |
| ACAAGCTCAAACATTCTTGA+AGG | 0.418237 | 1.1:+58283421 | MS.gene86821:CDS |
| TAAACATGGCATATAATTAC+GGG | 0.419343 | 1.1:+58283615 | MS.gene86821:CDS |
| TTGATGTTTAGTGGACTTGA+TGG | 0.419351 | 1.1:-58281246 | None:intergenic |
| GCAGTTAAAGAACCTGCATT+TGG | 0.420611 | 1.1:+58282081 | MS.gene86821:CDS |
| TTCTGTAAATTAGCGCATAA+GGG | 0.423993 | 1.1:-58283910 | None:intergenic |
| TGATATGTGCACAGGTAGTT+TGG | 0.424107 | 1.1:+58284123 | MS.gene86821:CDS |
| CAGGTTCTTTAACTGCGCTT+GGG | 0.424884 | 1.1:-58282074 | None:intergenic |
| GCAGGTTCTTTAACTGCGCT+TGG | 0.426747 | 1.1:-58282075 | None:intergenic |
| AACAGCACAAGTCTGAATAA+TGG | 0.434716 | 1.1:-58281589 | None:intergenic |
| GACAGTTGAAACTAGAATCT+TGG | 0.437254 | 1.1:-58283196 | None:intergenic |
| AGGATTTGCTTCATATCTGT+TGG | 0.442291 | 1.1:+58281999 | MS.gene86821:CDS |
| GCTTGTTTAAGGTCACCATT+TGG | 0.442681 | 1.1:-58283404 | None:intergenic |
| ATGGCAGTTATAGGGGTTCA+AGG | 0.442747 | 1.1:+58283935 | MS.gene86821:CDS |
| CAAGTAGTTGGCACTGCAAT+GGG | 0.442885 | 1.1:+58283809 | MS.gene86821:CDS |
| GGCCGTACCGTTTCTGGTAG+GGG | 0.452239 | 1.1:+58284087 | MS.gene86821:CDS |
| AGGAAGACATATGTGTTGTC+TGG | 0.456289 | 1.1:+58282030 | MS.gene86821:CDS |
| ACAGAACACATAACAATAAG+AGG | 0.457854 | 1.1:+58281378 | MS.gene86821:CDS |
| GGATTTGCTTCATATCTGTT+GGG | 0.460752 | 1.1:+58282000 | MS.gene86821:CDS |
| ATTCTAGTTTCAACTGTCCT+TGG | 0.462241 | 1.1:+58283201 | MS.gene86821:CDS |
| ATTGCACACGCACCTCTCCC+AGG | 0.462537 | 1.1:+58283771 | MS.gene86821:CDS |
| CCGCTTGTTGATCGGCGTAA+AGG | 0.468950 | 1.1:+58283066 | MS.gene86821:CDS |
| CCATTGCAGTGCCAACTACT+TGG | 0.469410 | 1.1:-58283808 | None:intergenic |
| TATTTCAGGAAGCAAGTACA+TGG | 0.472341 | 1.1:+58282714 | MS.gene86821:intron |
| TTATGTATCCGCTTGTTGAT+CGG | 0.475175 | 1.1:+58283058 | MS.gene86821:CDS |
| GTTGCAAAACCACTTGGATA+AGG | 0.475631 | 1.1:-58282547 | None:intergenic |
| TTGGCATACGAACATCGCCC+TGG | 0.477283 | 1.1:-58283789 | None:intergenic |
| ATTAGTCCAGAAGCAATTGC+TGG | 0.479004 | 1.1:-58284196 | None:intergenic |
| GTGTAGTGGCAGCACTTGTT+GGG | 0.479516 | 1.1:+58283684 | MS.gene86821:CDS |
| TGTCTTAATTCCACTCAGAA+AGG | 0.483712 | 1.1:+58282149 | MS.gene86821:CDS |
| ATTGCTTCTGGACTAATTTG+CGG | 0.484236 | 1.1:+58284202 | MS.gene86821:CDS |
| TGGCCGTACCGTTTCTGGTA+GGG | 0.487172 | 1.1:+58284086 | MS.gene86821:CDS |
| CAAGCTTGCAATCCAAAGGT+TGG | 0.490018 | 1.1:-58282825 | None:intergenic |
| ATGGCCGTACCGTTTCTGGT+AGG | 0.493169 | 1.1:+58284085 | MS.gene86821:CDS |
| TCTGGACTAATTTGCGGGGA+AGG | 0.499946 | 1.1:+58284208 | MS.gene86821:CDS |
| GAGCTTCTTCCTGTTCTACA+AGG | 0.503256 | 1.1:+58283850 | MS.gene86821:CDS |
| CAGAAACATGGCAGTTATAG+GGG | 0.504777 | 1.1:+58283928 | MS.gene86821:CDS |
| TACGAACATCGCCCTGGGAG+AGG | 0.508872 | 1.1:-58283783 | None:intergenic |
| TTGTTTGTGAGTATGATGAT+TGG | 0.510508 | 1.1:+58281402 | MS.gene86821:CDS |
| ATGAAGCTGAACCTTACAAC+AGG | 0.516868 | 1.1:+58281447 | MS.gene86821:CDS |
| CCAAGTAGTTGGCACTGCAA+TGG | 0.516937 | 1.1:+58283808 | MS.gene86821:CDS |
| CTTCCAAGCTTGCAATCCAA+AGG | 0.518270 | 1.1:-58282829 | None:intergenic |
| TTAAAGAACCTGCATTTGGT+TGG | 0.523266 | 1.1:+58282085 | MS.gene86821:CDS |
| ACGGCCATGACCATCGGTAA+TGG | 0.525061 | 1.1:-58284070 | None:intergenic |
| CTTAGAAGAAACTAACATGA+AGG | 0.531827 | 1.1:+58283107 | MS.gene86821:CDS |
| AAGTATGCCCCTACCAGAAA+CGG | 0.532502 | 1.1:-58284094 | None:intergenic |
| ACCGCTGTTGCAAAACCACT+TGG | 0.532997 | 1.1:-58282553 | None:intergenic |
| TAATCCAATCTGATGAACAT+TGG | 0.534849 | 1.1:+58281355 | MS.gene86821:CDS |
| TCTCATTAAATCCGTGATCT+CGG | 0.542009 | 1.1:+58283712 | MS.gene86821:CDS |
| AACGGTACGGCCATGACCAT+CGG | 0.544921 | 1.1:-58284076 | None:intergenic |
| GCATTGCAGAATGCGAGAGA+TGG | 0.551488 | 1.1:-58283569 | None:intergenic |
| CCAATGTGGATCGGGGTGGT+TGG | 0.555058 | 1.1:+58283452 | MS.gene86821:CDS |
| CCAACCACCCCGATCCACAT+TGG | 0.558976 | 1.1:-58283452 | None:intergenic |
| TTCTACAAGGCATTTGATGT+GGG | 0.559939 | 1.1:+58283863 | MS.gene86821:CDS |
| TTTGCAATTGATATGTGCAC+AGG | 0.560248 | 1.1:+58284115 | MS.gene86821:CDS |
| GTGGCAGCACTTGTTGGGTG+TGG | 0.560583 | 1.1:+58283689 | MS.gene86821:CDS |
| GTAACAAATTTCATGCAGAT+AGG | 0.560658 | 1.1:-58284280 | None:intergenic |
| CCAGACATCCAACCAAATGC+AGG | 0.560714 | 1.1:-58282093 | None:intergenic |
| GTTCTACAAGGCATTTGATG+TGG | 0.561788 | 1.1:+58283862 | MS.gene86821:CDS |
| GAGAGCATTCCAATGTGGAT+CGG | 0.564131 | 1.1:+58283443 | MS.gene86821:CDS |
| CTCAATTTACCTTATCCAAG+TGG | 0.567851 | 1.1:+58282538 | MS.gene86821:CDS |
| TTAGAAGAAACTAACATGAA+GGG | 0.576320 | 1.1:+58283108 | MS.gene86821:CDS |
| GATGCCATTACCGATGGTCA+TGG | 0.577978 | 1.1:+58284066 | MS.gene86821:CDS |
| CACTTGGATAAGGTAAATTG+AGG | 0.578530 | 1.1:-58282537 | None:intergenic |
| CAGAGACAAGTTCACAAGGT+GGG | 0.586027 | 1.1:-58283007 | None:intergenic |
| TCTGTAAATTAGCGCATAAG+GGG | 0.587143 | 1.1:-58283909 | None:intergenic |
| TGATTCTTTCATGTACGCCA+AGG | 0.587279 | 1.1:-58283218 | None:intergenic |
| GCTAGAGCAAGAATAGCAGC+AGG | 0.590008 | 1.1:-58284244 | None:intergenic |
| TGGCATACGAACATCGCCCT+GGG | 0.590951 | 1.1:-58283788 | None:intergenic |
| TTGCACACGCACCTCTCCCA+GGG | 0.591980 | 1.1:+58283772 | MS.gene86821:CDS |
| TTAATCAGAACATGGAGGAA+AGG | 0.596522 | 1.1:+58281310 | MS.gene86821:CDS |
| ATTGCAAGACACCGAGATCA+CGG | 0.597470 | 1.1:-58283723 | None:intergenic |
| CCTTTACGCCGATCAACAAG+CGG | 0.598669 | 1.1:-58283066 | None:intergenic |
| TTAGCTGCTGATGATATGCA+CGG | 0.598888 | 1.1:+58283377 | MS.gene86821:CDS |
| TTGTCTGGAGTAGGCACTGA+GGG | 0.599934 | 1.1:+58282045 | MS.gene86821:CDS |
| GATATGCACGGGAATCCAAA+TGG | 0.600924 | 1.1:+58283389 | MS.gene86821:CDS |
| CATAAGAGAGCACAGCTCCA+AGG | 0.601707 | 1.1:-58283032 | None:intergenic |
| ACAAATTTCATGCAGATAGG+CGG | 0.603089 | 1.1:-58284277 | None:intergenic |
| TCAGCTGAGGAAACATGCGC+GGG | 0.603914 | 1.1:-58283511 | None:intergenic |
| ACATATGTGTTGTCTGGAGT+AGG | 0.606766 | 1.1:+58282036 | MS.gene86821:CDS |
| TGCGCTAATTTACAGAAACA+TGG | 0.611107 | 1.1:+58283916 | MS.gene86821:CDS |
| ATTGCTCTAATCCTTGGTGA+TGG | 0.613675 | 1.1:+58283159 | MS.gene86821:CDS |
| ACTGTGACAGGAAAAGAGAA+TGG | 0.615219 | 1.1:+58283662 | MS.gene86821:CDS |
| TGCCCCTACCAGAAACGGTA+CGG | 0.622037 | 1.1:-58284089 | None:intergenic |
| ATGTTCGTATGCCAAGTAGT+TGG | 0.622489 | 1.1:+58283797 | MS.gene86821:CDS |
| AGGAAAAGAGAATGGTGTAG+TGG | 0.626117 | 1.1:+58283670 | MS.gene86821:CDS |
| GCTGAACCTTACAACAGGAA+TGG | 0.626965 | 1.1:+58281452 | MS.gene86821:CDS |
| TAGCTGCTGATGATATGCAC+GGG | 0.628013 | 1.1:+58283378 | MS.gene86821:CDS |
| TTCAGCTGAGGAAACATGCG+CGG | 0.629166 | 1.1:-58283512 | None:intergenic |
| GAAATGGATGCCATTACCGA+TGG | 0.631123 | 1.1:+58284060 | MS.gene86821:CDS |
| TAATTTGCGGGGAAGGACTG+TGG | 0.634672 | 1.1:+58284215 | MS.gene86821:CDS |
| ACATAGTACCATTTCAGCTG+AGG | 0.638500 | 1.1:-58283524 | None:intergenic |
| TTCTCAGGCAAAGAAGACTG+TGG | 0.640879 | 1.1:+58282789 | MS.gene86821:CDS |
| CAAAGTTGCAAGCAATGTCG+AGG | 0.653267 | 1.1:-58283971 | None:intergenic |
| AAGAGATATTAATCAGAACA+TGG | 0.654492 | 1.1:+58281302 | MS.gene86821:CDS |
| GGAGCAGAGACAAGTTCACA+AGG | 0.657179 | 1.1:-58283011 | None:intergenic |
| GAGCATTCCAATGTGGATCG+GGG | 0.663368 | 1.1:+58283445 | MS.gene86821:CDS |
| AAGTCCACTAAACATCAACA+TGG | 0.666317 | 1.1:+58281251 | MS.gene86821:CDS |
| ATTTCAGGAAGCAAGTACAT+GGG | 0.670330 | 1.1:+58282715 | MS.gene86821:intron |
| AGGTCTCACCGATATAAACA+TGG | 0.670610 | 1.1:+58283601 | MS.gene86821:CDS |
| TTTGATGTGGGAAATCCACA+TGG | 0.672631 | 1.1:+58283875 | MS.gene86821:CDS |
| TGAAGGAGAGCATTCCAATG+TGG | 0.677015 | 1.1:+58283438 | MS.gene86821:CDS |
| TAGAACAGGAAGAAGCTCAG+AGG | 0.678038 | 1.1:-58283845 | None:intergenic |
| TGCTTCTGGACTAATTTGCG+GGG | 0.681116 | 1.1:+58284204 | MS.gene86821:CDS |
| GGACTACAAACCTTTCTGAG+TGG | 0.685333 | 1.1:-58282159 | None:intergenic |
| GGGGCTTTGAATTCTCCATG+TGG | 0.688129 | 1.1:-58283890 | None:intergenic |
| GCAGAGACAAGTTCACAAGG+TGG | 0.689164 | 1.1:-58283008 | None:intergenic |
| CATTCCAATGTGGATCGGGG+TGG | 0.693940 | 1.1:+58283448 | MS.gene86821:CDS |
| AAGTATATACGCCATCACCA+AGG | 0.720711 | 1.1:-58283170 | None:intergenic |
| AGATATTAATCAGAACATGG+AGG | 0.737419 | 1.1:+58281305 | MS.gene86821:CDS |
| AAGTAGTTGGCACTGCAATG+GGG | 0.753918 | 1.1:+58283810 | MS.gene86821:CDS |
| GTTGTCTGGAGTAGGCACTG+AGG | 0.773435 | 1.1:+58282044 | MS.gene86821:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCTTATATTATAATATTTC+AGG | + | chr1.1:58282700-58282719 | MS.gene86821:intron | 10.0% |
| !! | TGAAATATTATAATATAAGA+TGG | - | chr1.1:58282701-58282720 | None:intergenic | 10.0% |
| !! | ATGTTACTAATCTTATTATT+TGG | + | chr1.1:58282920-58282939 | MS.gene86821:intron | 15.0% |
| !! | CATATAATATATAATTGGTT+TGG | + | chr1.1:58282875-58282894 | MS.gene86821:intron | 15.0% |
| !! | TCAAGCATATAATATATAAT+TGG | + | chr1.1:58282870-58282889 | MS.gene86821:intron | 15.0% |
| !!! | AAGTAGATTTTATTAAAAAG+TGG | + | chr1.1:58282328-58282347 | MS.gene86821:intron | 15.0% |
| !!! | TTAATAAAATCTACTTCTTT+TGG | - | chr1.1:58282324-58282343 | None:intergenic | 15.0% |
| !! | ATAAACATGGCATATAATTA+CGG | + | chr1.1:58283614-58283633 | MS.gene86821:CDS | 20.0% |
| !! | ATTATATGCCATGTTTATAT+CGG | - | chr1.1:58283612-58283631 | None:intergenic | 20.0% |
| !! | GAAAAATTCAAAAGAAGAAA+GGG | - | chr1.1:58283292-58283311 | None:intergenic | 20.0% |
| !! | GAAAATGATAAATATGTAGT+AGG | - | chr1.1:58281653-58281672 | None:intergenic | 20.0% |
| !! | TAACATTCTCCTTAATTAAT+TGG | - | chr1.1:58282271-58282290 | None:intergenic | 20.0% |
| !! | TGAAAAATTCAAAAGAAGAA+AGG | - | chr1.1:58283293-58283312 | None:intergenic | 20.0% |
| !!! | ATCCAAATTTTTGTACAAAA+AGG | - | chr1.1:58282201-58282220 | None:intergenic | 20.0% |
| !!! | TCATTTTTTTGAGAACAAAA+TGG | + | chr1.1:58281930-58281949 | MS.gene86821:intron | 20.0% |
| !!! | TTAATTAGACACTGAATTTT+TGG | - | chr1.1:58282481-58282500 | None:intergenic | 20.0% |
| ! | AAAGAAGCTCCAATTAATTA+AGG | + | chr1.1:58282259-58282278 | MS.gene86821:intron | 25.0% |
| ! | AAGAGATATTAATCAGAACA+TGG | + | chr1.1:58281302-58281321 | MS.gene86821:CDS | 25.0% |
| ! | TAAACATGGCATATAATTAC+GGG | + | chr1.1:58283615-58283634 | MS.gene86821:CDS | 25.0% |
| ! | TGTTGCAATTTGGAAAATAA+AGG | + | chr1.1:58282660-58282679 | MS.gene86821:intron | 25.0% |
| ! | TTAGAAGAAACTAACATGAA+GGG | + | chr1.1:58283108-58283127 | MS.gene86821:CDS | 25.0% |
| ! | TTTGTAGTCCTATAATACTT+TGG | + | chr1.1:58282172-58282191 | MS.gene86821:intron | 25.0% |
| !! | ATTTTTCACCCAAAAAGATT+GGG | + | chr1.1:58284038-58284057 | MS.gene86821:CDS | 25.0% |
| !! | CTCCTTTTTGTACAAAAATT+TGG | + | chr1.1:58282196-58282215 | MS.gene86821:intron | 25.0% |
| !! | TAGTTTCTTCTAAGTTTTCA+GGG | - | chr1.1:58283101-58283120 | None:intergenic | 25.0% |
| !! | TATGTTCTTTACCCTTTTTA+TGG | - | chr1.1:58283254-58283273 | None:intergenic | 25.0% |
| !! | TCTGAATAATGGTATTTTCT+TGG | - | chr1.1:58281581-58281600 | None:intergenic | 25.0% |
| !! | TTAGTTTCTTCTAAGTTTTC+AGG | - | chr1.1:58283102-58283121 | None:intergenic | 25.0% |
| !!! | AACTTTTGTTTGTTGCAATT+TGG | + | chr1.1:58282650-58282669 | MS.gene86821:intron | 25.0% |
| !!! | ATTTTTCGATCAGTTTCTTA+TGG | + | chr1.1:58282748-58282767 | MS.gene86821:CDS | 25.0% |
| !!! | CATTTAAAAGTACTGAAAGA+TGG | - | chr1.1:58282237-58282256 | None:intergenic | 25.0% |
| !!! | TTTTTCGATCAGTTTCTTAT+GGG | + | chr1.1:58282749-58282768 | MS.gene86821:CDS | 25.0% |
| AAATCAGATCATGTCAAGTA+AGG | + | chr1.1:58281738-58281757 | MS.gene86821:intron | 30.0% | |
| AAGAGCAAGAACCATAAAAA+GGG | + | chr1.1:58283240-58283259 | MS.gene86821:CDS | 30.0% | |
| AATTCCATGTTGATGTTTAG+TGG | - | chr1.1:58281258-58281277 | None:intergenic | 30.0% | |
| ACAGAACACATAACAATAAG+AGG | + | chr1.1:58281378-58281397 | MS.gene86821:CDS | 30.0% | |
| ACTAACATGAAGGGTTTATA+TGG | + | chr1.1:58283117-58283136 | MS.gene86821:CDS | 30.0% | |
| AGATATTAATCAGAACATGG+AGG | + | chr1.1:58281305-58281324 | MS.gene86821:CDS | 30.0% | |
| ATTATTTCAGCTCCTATAAC+TGG | - | chr1.1:58281339-58281358 | None:intergenic | 30.0% | |
| CAACAAAGCAAACAACAAAA+AGG | - | chr1.1:58282122-58282141 | None:intergenic | 30.0% | |
| CTAAACATCAACATGGAATT+TGG | + | chr1.1:58281258-58281277 | MS.gene86821:CDS | 30.0% | |
| CTTAGAAGAAACTAACATGA+AGG | + | chr1.1:58283107-58283126 | MS.gene86821:CDS | 30.0% | |
| GAAGAGATGTTTATAGTACT+TGG | - | chr1.1:58282617-58282636 | None:intergenic | 30.0% | |
| GAAGGGTTTATATGGTTATA+AGG | + | chr1.1:58283125-58283144 | MS.gene86821:CDS | 30.0% | |
| GGAATTTGGAGAGAAAAAAA+TGG | + | chr1.1:58281272-58281291 | MS.gene86821:CDS | 30.0% | |
| GTAACAAATTTCATGCAGAT+AGG | - | chr1.1:58284283-58284302 | None:intergenic | 30.0% | |
| GTTCTCAAAAAAATGAACTC+TGG | - | chr1.1:58281926-58281945 | None:intergenic | 30.0% | |
| TAATCCAATCTGATGAACAT+TGG | + | chr1.1:58281355-58281374 | MS.gene86821:CDS | 30.0% | |
| TCAAAAAAATGAACTCTGGT+TGG | - | chr1.1:58281922-58281941 | None:intergenic | 30.0% | |
| TTCTGTAAATTAGCGCATAA+GGG | - | chr1.1:58283913-58283932 | None:intergenic | 30.0% | |
| TTGTTTGTGAGTATGATGAT+TGG | + | chr1.1:58281402-58281421 | MS.gene86821:CDS | 30.0% | |
| TTTCTGTAAATTAGCGCATA+AGG | - | chr1.1:58283914-58283933 | None:intergenic | 30.0% | |
| ! | AAAGGAGTCCAAAGTATTAT+AGG | - | chr1.1:58282183-58282202 | None:intergenic | 30.0% |
| ! | AGAATGTTTGAGCTTGTTTA+AGG | - | chr1.1:58283418-58283437 | None:intergenic | 30.0% |
| ! | ATCCATTTCCCAATCTTTTT+GGG | - | chr1.1:58284049-58284068 | None:intergenic | 30.0% |
| ! | CTTTTGTGTTTGTAAGAAGT+TGG | + | chr1.1:58281508-58281527 | MS.gene86821:CDS | 30.0% |
| ! | GATTTTTCACCCAAAAAGAT+TGG | + | chr1.1:58284037-58284056 | MS.gene86821:CDS | 30.0% |
| ! | TTCTTTAAGTGGTTTTTCTC+AGG | + | chr1.1:58282774-58282793 | MS.gene86821:CDS | 30.0% |
| ! | TTTTCGATCAGTTTCTTATG+GGG | + | chr1.1:58282750-58282769 | MS.gene86821:CDS | 30.0% |
| !! | TTGCAAAGCCATTTTGTTAA+CGG | - | chr1.1:58282443-58282462 | None:intergenic | 30.0% |
| !!! | ATTGCTTGCAACTTTGTTTT+GGG | + | chr1.1:58283978-58283997 | MS.gene86821:CDS | 30.0% |
| !!! | CTTTTTGTTGTTTGCTTTGT+TGG | + | chr1.1:58282120-58282139 | MS.gene86821:CDS | 30.0% |
| AACAGCACAAGTCTGAATAA+TGG | - | chr1.1:58281592-58281611 | None:intergenic | 35.0% | |
| AAGTCCACTAAACATCAACA+TGG | + | chr1.1:58281251-58281270 | MS.gene86821:CDS | 35.0% | |
| ACAAATTTCATGCAGATAGG+CGG | - | chr1.1:58284280-58284299 | None:intergenic | 35.0% | |
| ACAAGCTCAAACATTCTTGA+AGG | + | chr1.1:58283421-58283440 | MS.gene86821:CDS | 35.0% | |
| ACAGAAACATGGCAGTTATA+GGG | + | chr1.1:58283927-58283946 | MS.gene86821:CDS | 35.0% | |
| ATCATCAGCAGCTAATTCTA+AGG | - | chr1.1:58283372-58283391 | None:intergenic | 35.0% | |
| ATTGCTTCTGGACTAATTTG+CGG | + | chr1.1:58284202-58284221 | MS.gene86821:CDS | 35.0% | |
| ATTTCAGGAAGCAAGTACAT+GGG | + | chr1.1:58282715-58282734 | MS.gene86821:intron | 35.0% | |
| CAAGAGCAAGAACCATAAAA+AGG | + | chr1.1:58283239-58283258 | MS.gene86821:CDS | 35.0% | |
| CACTTGGATAAGGTAAATTG+AGG | - | chr1.1:58282540-58282559 | None:intergenic | 35.0% | |
| CATATCTGTTGGGATTAAAC+AGG | + | chr1.1:58282010-58282029 | MS.gene86821:CDS | 35.0% | |
| CTATCAATTGCTCTAATCCT+TGG | + | chr1.1:58283153-58283172 | MS.gene86821:CDS | 35.0% | |
| CTCAATTTACCTTATCCAAG+TGG | + | chr1.1:58282538-58282557 | MS.gene86821:CDS | 35.0% | |
| GACAGTTGAAACTAGAATCT+TGG | - | chr1.1:58283199-58283218 | None:intergenic | 35.0% | |
| GTCCTTGATTTCTAACGAAA+CGG | - | chr1.1:58281695-58281714 | None:intergenic | 35.0% | |
| TACAGAAACATGGCAGTTAT+AGG | + | chr1.1:58283926-58283945 | MS.gene86821:CDS | 35.0% | |
| TATTTCAGGAAGCAAGTACA+TGG | + | chr1.1:58282714-58282733 | MS.gene86821:intron | 35.0% | |
| TCACACACAGGATGATAAAA+TGG | + | chr1.1:58282591-58282610 | MS.gene86821:CDS | 35.0% | |
| TCGTTAACGAGATTCAACTA+AGG | + | chr1.1:58281803-58281822 | MS.gene86821:intron | 35.0% | |
| TCGTTAACGATTGAAGTATG+AGG | - | chr1.1:58281793-58281812 | None:intergenic | 35.0% | |
| TCTCATTAAATCCGTGATCT+CGG | + | chr1.1:58283712-58283731 | MS.gene86821:CDS | 35.0% | |
| TCTGTAAATTAGCGCATAAG+GGG | - | chr1.1:58283912-58283931 | None:intergenic | 35.0% | |
| TCTTATGGGGTTTCTTTAAG+TGG | + | chr1.1:58282763-58282782 | MS.gene86821:CDS | 35.0% | |
| TGCGCTAATTTACAGAAACA+TGG | + | chr1.1:58283916-58283935 | MS.gene86821:CDS | 35.0% | |
| TGTCTTAATTCCACTCAGAA+AGG | + | chr1.1:58282149-58282168 | MS.gene86821:CDS | 35.0% | |
| TTAAAGAACCTGCATTTGGT+TGG | + | chr1.1:58282085-58282104 | MS.gene86821:CDS | 35.0% | |
| TTAATCAGAACATGGAGGAA+AGG | + | chr1.1:58281310-58281329 | MS.gene86821:CDS | 35.0% | |
| TTCCGTTTCGTTAGAAATCA+AGG | + | chr1.1:58281690-58281709 | MS.gene86821:intron | 35.0% | |
| TTCGTTAGAAATCAAGGACA+CGG | + | chr1.1:58281696-58281715 | MS.gene86821:intron | 35.0% | |
| TTTGAACAGTTTCCAACCTT+TGG | + | chr1.1:58282813-58282832 | MS.gene86821:CDS | 35.0% | |
| TTTGCAATTGATATGTGCAC+AGG | + | chr1.1:58284115-58284134 | MS.gene86821:CDS | 35.0% | |
| ! | ACTAAAGTGCTTGAAAAAGC+TGG | + | chr1.1:58281531-58281550 | MS.gene86821:CDS | 35.0% |
| ! | AGGATTTGCTTCATATCTGT+TGG | + | chr1.1:58281999-58282018 | MS.gene86821:CDS | 35.0% |
| ! | CATCCATTTCCCAATCTTTT+TGG | - | chr1.1:58284050-58284069 | None:intergenic | 35.0% |
| ! | GGATTTGCTTCATATCTGTT+GGG | + | chr1.1:58282000-58282019 | MS.gene86821:CDS | 35.0% |
| ! | TTATGTATCCGCTTGTTGAT+CGG | + | chr1.1:58283058-58283077 | MS.gene86821:CDS | 35.0% |
| ! | TTCTACAAGGCATTTGATGT+GGG | + | chr1.1:58283863-58283882 | MS.gene86821:CDS | 35.0% |
| !! | ATTCTAGTTTCAACTGTCCT+TGG | + | chr1.1:58283201-58283220 | MS.gene86821:CDS | 35.0% |
| !! | CATTGCTTGCAACTTTGTTT+TGG | + | chr1.1:58283977-58283996 | MS.gene86821:CDS | 35.0% |
| !! | GATTTTAGCACGACTTTTGT+GGG | + | chr1.1:58282967-58282986 | MS.gene86821:CDS | 35.0% |
| !! | TGCAAAGCCATTTTGTTAAC+GGG | - | chr1.1:58282442-58282461 | None:intergenic | 35.0% |
| !! | TTGATGTTTAGTGGACTTGA+TGG | - | chr1.1:58281249-58281268 | None:intergenic | 35.0% |
| !!! | GAAAGTTGCACTATTTTTGC+TGG | + | chr1.1:58283637-58283656 | MS.gene86821:CDS | 35.0% |
| AACCATCAACTCTGCTTTCT+TGG | - | chr1.1:58284176-58284195 | None:intergenic | 40.0% | |
| AAGTATATACGCCATCACCA+AGG | - | chr1.1:58283173-58283192 | None:intergenic | 40.0% | |
| ACATAGTACCATTTCAGCTG+AGG | - | chr1.1:58283527-58283546 | None:intergenic | 40.0% | |
| ACTGTGACAGGAAAAGAGAA+TGG | + | chr1.1:58283662-58283681 | MS.gene86821:CDS | 40.0% | |
| AGGAAAAGAGAATGGTGTAG+TGG | + | chr1.1:58283670-58283689 | MS.gene86821:CDS | 40.0% | |
| AGGAAGACATATGTGTTGTC+TGG | + | chr1.1:58282030-58282049 | MS.gene86821:CDS | 40.0% | |
| AGGTCTCACCGATATAAACA+TGG | + | chr1.1:58283601-58283620 | MS.gene86821:CDS | 40.0% | |
| ATACTTAACCAATGCTCCTG+GGG | - | chr1.1:58282301-58282320 | None:intergenic | 40.0% | |
| ATGAAGCTGAACCTTACAAC+AGG | + | chr1.1:58281447-58281466 | MS.gene86821:CDS | 40.0% | |
| ATGTTCGTATGCCAAGTAGT+TGG | + | chr1.1:58283797-58283816 | MS.gene86821:CDS | 40.0% | |
| ATTAGTCCAGAAGCAATTGC+TGG | - | chr1.1:58284199-58284218 | None:intergenic | 40.0% | |
| ATTGCTCTAATCCTTGGTGA+TGG | + | chr1.1:58283159-58283178 | MS.gene86821:CDS | 40.0% | |
| CACCCAAAAAGATTGGGAAA+TGG | + | chr1.1:58284044-58284063 | MS.gene86821:CDS | 40.0% | |
| CAGAAACATGGCAGTTATAG+GGG | + | chr1.1:58283928-58283947 | MS.gene86821:CDS | 40.0% | |
| CATCAAATGCCTTGTAGAAC+AGG | - | chr1.1:58283862-58283881 | None:intergenic | 40.0% | |
| CTGTCCAATGTTCATCAGAT+TGG | - | chr1.1:58281362-58281381 | None:intergenic | 40.0% | |
| CTTGCACATTCTTCTTATGC+AGG | + | chr1.1:58282501-58282520 | MS.gene86821:intron | 40.0% | |
| GATACTTAACCAATGCTCCT+GGG | - | chr1.1:58282302-58282321 | None:intergenic | 40.0% | |
| GCAGCAGAGACATTCAAATT+TGG | - | chr1.1:58281480-58281499 | None:intergenic | 40.0% | |
| GCAGTTAAAGAACCTGCATT+TGG | + | chr1.1:58282081-58282100 | MS.gene86821:CDS | 40.0% | |
| GTTGCAAAACCACTTGGATA+AGG | - | chr1.1:58282550-58282569 | None:intergenic | 40.0% | |
| TAATCCAGAGTTCGGTTAGA+AGG | - | chr1.1:58281899-58281918 | None:intergenic | 40.0% | |
| TGATATGTGCACAGGTAGTT+TGG | + | chr1.1:58284123-58284142 | MS.gene86821:CDS | 40.0% | |
| TGATTCTTTCATGTACGCCA+AGG | - | chr1.1:58283221-58283240 | None:intergenic | 40.0% | |
| TTAGCTGCTGATGATATGCA+CGG | + | chr1.1:58283377-58283396 | MS.gene86821:CDS | 40.0% | |
| TTGATCGGCGTAAAGGAAAT+TGG | + | chr1.1:58283073-58283092 | MS.gene86821:CDS | 40.0% | |
| TTGGAACCATTCCTGTTGTA+AGG | - | chr1.1:58281461-58281480 | None:intergenic | 40.0% | |
| TTTGATGTGGGAAATCCACA+TGG | + | chr1.1:58283875-58283894 | MS.gene86821:CDS | 40.0% | |
| ! | ACATATGTGTTGTCTGGAGT+AGG | + | chr1.1:58282036-58282055 | MS.gene86821:CDS | 40.0% |
| ! | CATCAATGGTTTTCACACAC+AGG | + | chr1.1:58282579-58282598 | MS.gene86821:CDS | 40.0% |
| ! | GCTTGTTTAAGGTCACCATT+TGG | - | chr1.1:58283407-58283426 | None:intergenic | 40.0% |
| ! | GTATTTTCTTGGCGAGTGAA+TGG | - | chr1.1:58281570-58281589 | None:intergenic | 40.0% |
| ! | GTTCTACAAGGCATTTGATG+TGG | + | chr1.1:58283862-58283881 | MS.gene86821:CDS | 40.0% |
| ! | TGCTATAGCATTGCTGTTAG+CGG | + | chr1.1:58281615-58281634 | MS.gene86821:CDS | 40.0% |
| ! | TTGCTTCTGGACTAATTTGC+GGG | + | chr1.1:58284203-58284222 | MS.gene86821:CDS | 40.0% |
| !! | CGATTTTAGCACGACTTTTG+TGG | + | chr1.1:58282966-58282985 | MS.gene86821:CDS | 40.0% |
| !! | GGGTTCTTTGCTTTTGCAAT+AGG | + | chr1.1:58283998-58284017 | MS.gene86821:CDS | 40.0% |
| AAGTAGTTGGCACTGCAATG+GGG | + | chr1.1:58283810-58283829 | MS.gene86821:CDS | 45.0% | |
| AAGTATGCCCCTACCAGAAA+CGG | - | chr1.1:58284097-58284116 | None:intergenic | 45.0% | |
| AGAATGTTAAACAGTGCCCC+AGG | + | chr1.1:58282282-58282301 | MS.gene86821:intron | 45.0% | |
| ATGGCAGTTATAGGGGTTCA+AGG | + | chr1.1:58283935-58283954 | MS.gene86821:CDS | 45.0% | |
| ATGGTTCCAGCAATTGCTTC+TGG | + | chr1.1:58284190-58284209 | MS.gene86821:CDS | 45.0% | |
| ATTCCTTAACGAGTGCCCTA+GGG | + | chr1.1:58282413-58282432 | MS.gene86821:intron | 45.0% | |
| ATTGCAAGACACCGAGATCA+CGG | - | chr1.1:58283726-58283745 | None:intergenic | 45.0% | |
| CAAAGTTGCAAGCAATGTCG+AGG | - | chr1.1:58283974-58283993 | None:intergenic | 45.0% | |
| CAACCTTTGGATTGCAAGCT+TGG | + | chr1.1:58282826-58282845 | MS.gene86821:CDS | 45.0% | |
| CAAGCTTGCAATCCAAAGGT+TGG | - | chr1.1:58282828-58282847 | None:intergenic | 45.0% | |
| CAAGTAGTTGGCACTGCAAT+GGG | + | chr1.1:58283809-58283828 | MS.gene86821:CDS | 45.0% | |
| CAGAGACAAGTTCACAAGGT+GGG | - | chr1.1:58283010-58283029 | None:intergenic | 45.0% | |
| CAGGTTCTTTAACTGCGCTT+GGG | - | chr1.1:58282077-58282096 | None:intergenic | 45.0% | |
| CTCCAAGAAAGCAGAGTTGA+TGG | + | chr1.1:58284171-58284190 | MS.gene86821:CDS | 45.0% | |
| CTTACCTTCTAACCGAACTC+TGG | + | chr1.1:58281892-58281911 | MS.gene86821:intron | 45.0% | |
| CTTCCAAGCTTGCAATCCAA+AGG | - | chr1.1:58282832-58282851 | None:intergenic | 45.0% | |
| GAAATGGATGCCATTACCGA+TGG | + | chr1.1:58284060-58284079 | MS.gene86821:CDS | 45.0% | |
| GAGCTTCTTCCTGTTCTACA+AGG | + | chr1.1:58283850-58283869 | MS.gene86821:CDS | 45.0% | |
| GAGGAAAGGTTGCCAGTTAT+AGG | + | chr1.1:58281324-58281343 | MS.gene86821:CDS | 45.0% | |
| GATATGCACGGGAATCCAAA+TGG | + | chr1.1:58283389-58283408 | MS.gene86821:CDS | 45.0% | |
| GCATGTTTCCTCAGCTGAAA+TGG | + | chr1.1:58283516-58283535 | MS.gene86821:CDS | 45.0% | |
| GCTGAACCTTACAACAGGAA+TGG | + | chr1.1:58281452-58281471 | MS.gene86821:CDS | 45.0% | |
| GGACTACAAACCTTTCTGAG+TGG | - | chr1.1:58282162-58282181 | None:intergenic | 45.0% | |
| GGATACTTAACCAATGCTCC+TGG | - | chr1.1:58282303-58282322 | None:intergenic | 45.0% | |
| TAGAACAGGAAGAAGCTCAG+AGG | - | chr1.1:58283848-58283867 | None:intergenic | 45.0% | |
| TAGCTGCTGATGATATGCAC+GGG | + | chr1.1:58283378-58283397 | MS.gene86821:CDS | 45.0% | |
| TTCTCAGGCAAAGAAGACTG+TGG | + | chr1.1:58282789-58282808 | MS.gene86821:CDS | 45.0% | |
| TTTGCGCTTGTGTGTGTTGT+AGG | + | chr1.1:58281976-58281995 | MS.gene86821:intron | 45.0% | |
| ! | AGAGCATTCCAATGTGGATC+GGG | + | chr1.1:58283444-58283463 | MS.gene86821:CDS | 45.0% |
| ! | CTCGCATTCTGCAATGCTTT+TGG | + | chr1.1:58283575-58283594 | MS.gene86821:CDS | 45.0% |
| ! | TAGCATTGCTGTTAGCGGTA+AGG | + | chr1.1:58281620-58281639 | MS.gene86821:intron | 45.0% |
| ! | TGCTTCTGGACTAATTTGCG+GGG | + | chr1.1:58284204-58284223 | MS.gene86821:CDS | 45.0% |
| ! | TTTTTGCTGGCAACTGTGAC+AGG | + | chr1.1:58283650-58283669 | MS.gene86821:CDS | 45.0% |
| !! | CTGGTTGGTAATCCAGAGTT+CGG | - | chr1.1:58281907-58281926 | None:intergenic | 45.0% |
| !! | GAGAGCATTCCAATGTGGAT+CGG | + | chr1.1:58283443-58283462 | MS.gene86821:CDS | 45.0% |
| !! | TCCAAGTGGTTTTGCAACAG+CGG | + | chr1.1:58282552-58282571 | MS.gene86821:CDS | 45.0% |
| !! | TGAAGGAGAGCATTCCAATG+TGG | + | chr1.1:58283438-58283457 | MS.gene86821:CDS | 45.0% |
| !!! | TTCTGCAATGCTTTTGGAGC+AGG | + | chr1.1:58283581-58283600 | MS.gene86821:CDS | 45.0% |
| !! | ATAATACTAATATTAATATA+TGG | + | chr1.1:58283316-58283335 | MS.gene86821:intron | 5.0% |
| !! | TAATACTAATATTAATATAT+GGG | + | chr1.1:58283317-58283336 | MS.gene86821:intron | 5.0% |
| ACCGCTGTTGCAAAACCACT+TGG | - | chr1.1:58282556-58282575 | None:intergenic | 50.0% | |
| CCAAGTAGTTGGCACTGCAA+TGG | + | chr1.1:58283808-58283827 | MS.gene86821:CDS | 50.0% | |
| CCAGACATCCAACCAAATGC+AGG | - | chr1.1:58282096-58282115 | None:intergenic | 50.0% | |
| CCATTGCAGTGCCAACTACT+TGG | - | chr1.1:58283811-58283830 | None:intergenic | 50.0% | |
| CCTGCATTTGGTTGGATGTC+TGG | + | chr1.1:58282093-58282112 | MS.gene86821:CDS | 50.0% | |
| CCTTTACGCCGATCAACAAG+CGG | - | chr1.1:58283069-58283088 | None:intergenic | 50.0% | |
| CTTGGAGCTGTGCTCTCTTA+TGG | + | chr1.1:58283033-58283052 | MS.gene86821:CDS | 50.0% | |
| GAGCATTCCAATGTGGATCG+GGG | + | chr1.1:58283445-58283464 | MS.gene86821:CDS | 50.0% | |
| GATGCCATTACCGATGGTCA+TGG | + | chr1.1:58284066-58284085 | MS.gene86821:CDS | 50.0% | |
| GATTCCTTAACGAGTGCCCT+AGG | + | chr1.1:58282412-58282431 | MS.gene86821:intron | 50.0% | |
| GCAACAGCGGTTCTCATCAA+TGG | + | chr1.1:58282565-58282584 | MS.gene86821:CDS | 50.0% | |
| GCAGAGACAAGTTCACAAGG+TGG | - | chr1.1:58283011-58283030 | None:intergenic | 50.0% | |
| GCAGGTTCTTTAACTGCGCT+TGG | - | chr1.1:58282078-58282097 | None:intergenic | 50.0% | |
| GCATTGCAGAATGCGAGAGA+TGG | - | chr1.1:58283572-58283591 | None:intergenic | 50.0% | |
| GCTAGAGCAAGAATAGCAGC+AGG | - | chr1.1:58284247-58284266 | None:intergenic | 50.0% | |
| GGAGCAGAGACAAGTTCACA+AGG | - | chr1.1:58283014-58283033 | None:intergenic | 50.0% | |
| GTGAACTTGTCTCTGCTCCT+TGG | + | chr1.1:58283015-58283034 | MS.gene86821:CDS | 50.0% | |
| GTGTAGTGGCAGCACTTGTT+GGG | + | chr1.1:58283684-58283703 | MS.gene86821:CDS | 50.0% | |
| TTCAGCTGAGGAAACATGCG+CGG | - | chr1.1:58283515-58283534 | None:intergenic | 50.0% | |
| TTCCTTAACGAGTGCCCTAG+GGG | + | chr1.1:58282414-58282433 | MS.gene86821:intron | 50.0% | |
| ! | CATAAGAGAGCACAGCTCCA+AGG | - | chr1.1:58283035-58283054 | None:intergenic | 50.0% |
| ! | TAATTTGCGGGGAAGGACTG+TGG | + | chr1.1:58284215-58284234 | MS.gene86821:CDS | 50.0% |
| ! | TCTGGACTAATTTGCGGGGA+AGG | + | chr1.1:58284208-58284227 | MS.gene86821:CDS | 50.0% |
| ! | TTTGTTAACGGGTGCCCCTA+GGG | - | chr1.1:58282431-58282450 | None:intergenic | 50.0% |
| !! | AGGGGCACCCGTTAACAAAA+TGG | + | chr1.1:58282432-58282451 | MS.gene86821:intron | 50.0% |
| !! | GGGGCTTTGAATTCTCCATG+TGG | - | chr1.1:58283893-58283912 | None:intergenic | 50.0% |
| !! | TTGTCTGGAGTAGGCACTGA+GGG | + | chr1.1:58282045-58282064 | MS.gene86821:CDS | 50.0% |
| !! | TTTTGTTAACGGGTGCCCCT+AGG | - | chr1.1:58282432-58282451 | None:intergenic | 50.0% |
| AACGGTACGGCCATGACCAT+CGG | - | chr1.1:58284079-58284098 | None:intergenic | 55.0% | |
| ACGGCCATGACCATCGGTAA+TGG | - | chr1.1:58284073-58284092 | None:intergenic | 55.0% | |
| CATTCCAATGTGGATCGGGG+TGG | + | chr1.1:58283448-58283467 | MS.gene86821:CDS | 55.0% | |
| GCGCTTGTGTGTGTTGTAGG+AGG | + | chr1.1:58281979-58281998 | MS.gene86821:intron | 55.0% | |
| GGTGTAGTGGCAGCACTTGT+TGG | + | chr1.1:58283683-58283702 | MS.gene86821:CDS | 55.0% | |
| TCAGCTGAGGAAACATGCGC+GGG | - | chr1.1:58283514-58283533 | None:intergenic | 55.0% | |
| TGCCCCTACCAGAAACGGTA+CGG | - | chr1.1:58284092-58284111 | None:intergenic | 55.0% | |
| TGGATCGGGGTGGTTGGATA+TGG | + | chr1.1:58283458-58283477 | MS.gene86821:CDS | 55.0% | |
| TGGCATACGAACATCGCCCT+GGG | - | chr1.1:58283791-58283810 | None:intergenic | 55.0% | |
| TTGGCATACGAACATCGCCC+TGG | - | chr1.1:58283792-58283811 | None:intergenic | 55.0% | |
| ! | AAACAGTGCCCCAGGAGCAT+TGG | + | chr1.1:58282290-58282309 | MS.gene86821:intron | 55.0% |
| ! | AGCACGACTTTTGTGGGAGC+AGG | + | chr1.1:58282973-58282992 | MS.gene86821:CDS | 55.0% |
| ! | CCGCTTGTTGATCGGCGTAA+AGG | + | chr1.1:58283066-58283085 | MS.gene86821:CDS | 55.0% |
| ! | GTTGTCTGGAGTAGGCACTG+AGG | + | chr1.1:58282044-58282063 | MS.gene86821:CDS | 55.0% |
| !! | ATGGCCGTACCGTTTCTGGT+AGG | + | chr1.1:58284085-58284104 | MS.gene86821:CDS | 55.0% |
| !! | TGGCCGTACCGTTTCTGGTA+GGG | + | chr1.1:58284086-58284105 | MS.gene86821:CDS | 55.0% |
| ATTGCACACGCACCTCTCCC+AGG | + | chr1.1:58283771-58283790 | MS.gene86821:CDS | 60.0% | |
| CCAACCACCCCGATCCACAT+TGG | - | chr1.1:58283455-58283474 | None:intergenic | 60.0% | |
| CCAATGTGGATCGGGGTGGT+TGG | + | chr1.1:58283452-58283471 | MS.gene86821:CDS | 60.0% | |
| GGTCATGGCCGTACCGTTTC+TGG | + | chr1.1:58284081-58284100 | MS.gene86821:CDS | 60.0% | |
| TACGAACATCGCCCTGGGAG+AGG | - | chr1.1:58283786-58283805 | None:intergenic | 60.0% | |
| TTGCACACGCACCTCTCCCA+GGG | + | chr1.1:58283772-58283791 | MS.gene86821:CDS | 60.0% | |
| ! | GTGGCAGCACTTGTTGGGTG+TGG | + | chr1.1:58283689-58283708 | MS.gene86821:CDS | 60.0% |
| ! | TGCCCCTAGGGCACTCGTTA+AGG | - | chr1.1:58282419-58282438 | None:intergenic | 60.0% |
| !! | GGCCGTACCGTTTCTGGTAG+GGG | + | chr1.1:58284087-58284106 | MS.gene86821:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 58281237 | 58284309 | 58281237 | ID=MS.gene86821 |
| chr1.1 | mRNA | 58281237 | 58284309 | 58281237 | ID=MS.gene86821.t1;Parent=MS.gene86821 |
| chr1.1 | exon | 58281237 | 58281636 | 58281237 | ID=MS.gene86821.t1.exon1;Parent=MS.gene86821.t1 |
| chr1.1 | CDS | 58281237 | 58281636 | 58281237 | ID=cds.MS.gene86821.t1;Parent=MS.gene86821.t1 |
| chr1.1 | exon | 58281998 | 58282170 | 58281998 | ID=MS.gene86821.t1.exon2;Parent=MS.gene86821.t1 |
| chr1.1 | CDS | 58281998 | 58282170 | 58281998 | ID=cds.MS.gene86821.t1;Parent=MS.gene86821.t1 |
| chr1.1 | exon | 58282523 | 58282617 | 58282523 | ID=MS.gene86821.t1.exon3;Parent=MS.gene86821.t1 |
| chr1.1 | CDS | 58282523 | 58282617 | 58282523 | ID=cds.MS.gene86821.t1;Parent=MS.gene86821.t1 |
| chr1.1 | exon | 58282722 | 58282856 | 58282722 | ID=MS.gene86821.t1.exon4;Parent=MS.gene86821.t1 |
| chr1.1 | CDS | 58282722 | 58282856 | 58282722 | ID=cds.MS.gene86821.t1;Parent=MS.gene86821.t1 |
| chr1.1 | exon | 58282957 | 58283261 | 58282957 | ID=MS.gene86821.t1.exon5;Parent=MS.gene86821.t1 |
| chr1.1 | CDS | 58282957 | 58283261 | 58282957 | ID=cds.MS.gene86821.t1;Parent=MS.gene86821.t1 |
| chr1.1 | exon | 58283375 | 58284309 | 58283375 | ID=MS.gene86821.t1.exon6;Parent=MS.gene86821.t1 |
| chr1.1 | CDS | 58283375 | 58284309 | 58283375 | ID=cds.MS.gene86821.t1;Parent=MS.gene86821.t1 |
| Gene Sequence |
| Protein sequence |
