Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013556.t1 | KEH35473.1 | 98.9 | 180 | 2 | 0 | 10 | 189 | 19 | 198 | 2.70E-96 | 361.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013556.t1 | Q5PPY1 | 56.1 | 173 | 75 | 1 | 16 | 188 | 9 | 180 | 1.8e-51 | 203.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013556.t1 | A0A072V298 | 98.9 | 180 | 2 | 0 | 10 | 189 | 19 | 198 | 2.0e-96 | 361.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene013556 | MS.gene85635 | PPI |
| MS.gene013556 | MS.gene025104 | PPI |
| MS.gene013556 | MS.gene026076 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013556.t1 | MTR_3g091920 | 98.343 | 181 | 3 | 0 | 9 | 189 | 18 | 198 | 1.30e-132 | 370 |
| MS.gene013556.t1 | MTR_3g091920 | 99.438 | 178 | 1 | 0 | 12 | 189 | 4 | 181 | 7.21e-132 | 367 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013556.t1 | AT1G09150 | 84.270 | 178 | 28 | 0 | 12 | 189 | 4 | 181 | 1.12e-112 | 318 |
Find 45 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTAATTTCTTCATTATATC+TGG | 0.192913 | 3.4:+84134535 | None:intergenic |
| CACCTCTTATAGTTGCTAAA+TGG | 0.288298 | 3.4:-84135836 | MS.gene013556:intron |
| AAAGCAATCAACAAGGGAAT+TGG | 0.322873 | 3.4:-84133800 | MS.gene013556:CDS |
| ATTATCTCAATGATGGTCTT+TGG | 0.327245 | 3.4:-84133763 | MS.gene013556:CDS |
| TGTCCTGGTCTTACATCTCC+TGG | 0.329472 | 3.4:-84134463 | MS.gene013556:CDS |
| AAATATGAACTTTACATTGA+TGG | 0.334633 | 3.4:+84135620 | None:intergenic |
| GGGTGTTCTGGATGAGGAAG+TGG | 0.336037 | 3.4:-84134440 | MS.gene013556:CDS |
| AACTATAAGAGGTGACTTCT+TGG | 0.338003 | 3.4:+84135845 | None:intergenic |
| TGGTGCAATAAGATTTGTTT+TGG | 0.351364 | 3.4:-84134503 | MS.gene013556:CDS |
| AAGCAATCAACAAGGGAATT+GGG | 0.354037 | 3.4:-84133799 | MS.gene013556:CDS |
| GTGTTCTGGATGAGGAAGTG+GGG | 0.404683 | 3.4:-84134438 | MS.gene013556:CDS |
| AACCATTTAGCAACTATAAG+AGG | 0.435947 | 3.4:+84135834 | None:intergenic |
| GGTGTTCTGGATGAGGAAGT+GGG | 0.436303 | 3.4:-84134439 | MS.gene013556:CDS |
| GTCCTGGTCTTACATCTCCT+GGG | 0.439119 | 3.4:-84134462 | MS.gene013556:CDS |
| AGAACAATACGGTGGAGATC+CGG | 0.454218 | 3.4:+84136887 | None:intergenic |
| TCCAACACTGGTTCAAGTCC+TGG | 0.460743 | 3.4:+84135879 | None:intergenic |
| TTTGACCAATATGATACAAC+CGG | 0.462723 | 3.4:-84136906 | None:intergenic |
| ACTATAAGAGGTGACTTCTT+GGG | 0.475825 | 3.4:+84135846 | None:intergenic |
| AAACAGCATGCCCTTGCCAT+TGG | 0.482054 | 3.4:-84134277 | MS.gene013556:CDS |
| TTTCTCATTTCAGGCCATCA+TGG | 0.485619 | 3.4:-84134308 | MS.gene013556:intron |
| TAGTCAGAACCATCTCAATC+TGG | 0.488658 | 3.4:-84135713 | MS.gene013556:CDS |
| TGTTCTGGATGAGGAAGTGG+GGG | 0.494533 | 3.4:-84134437 | MS.gene013556:CDS |
| AGTCGCAAGGTAGGCATGTA+CGG | 0.512614 | 3.4:+84135646 | None:intergenic |
| AACTTGCATTATCTCAATGA+TGG | 0.525811 | 3.4:-84133770 | MS.gene013556:CDS |
| ATTACTAAACTGCAGTATCC+AGG | 0.527390 | 3.4:-84135897 | MS.gene013556:intron |
| ATCTCCACCGTATTGTTCTC+CGG | 0.537310 | 3.4:-84136883 | MS.gene013556:intron |
| GAACCATCTCAATCTGGTTG+TGG | 0.552638 | 3.4:-84135707 | MS.gene013556:CDS |
| GGTGCAAACATAATGTGTCC+TGG | 0.560571 | 3.4:-84134478 | MS.gene013556:CDS |
| TCCTGGTCTTACATCTCCTG+GGG | 0.566559 | 3.4:-84134461 | MS.gene013556:CDS |
| TCCAGGACTTGAACCAGTGT+TGG | 0.569000 | 3.4:-84135880 | MS.gene013556:CDS |
| TCTCAATGATGGTCTTTGGA+AGG | 0.575361 | 3.4:-84133759 | MS.gene013556:intron |
| AGCAATCAACAAGGGAATTG+GGG | 0.580148 | 3.4:-84133798 | MS.gene013556:CDS |
| ACGTCAAAGTATTGCAGATG+AGG | 0.585598 | 3.4:-84136161 | MS.gene013556:intron |
| TGATGGAGAAGTCGCAAGGT+AGG | 0.596779 | 3.4:+84135637 | None:intergenic |
| CTACCGACCGGAGAACAATA+CGG | 0.602901 | 3.4:+84136876 | None:intergenic |
| TTTCAGGCCATCATGGCTGA+AGG | 0.607923 | 3.4:-84134301 | MS.gene013556:intron |
| TCACCACAACCAGATTGAGA+TGG | 0.615908 | 3.4:+84135704 | None:intergenic |
| ACATTGATGGAGAAGTCGCA+AGG | 0.629589 | 3.4:+84135633 | None:intergenic |
| TTCAGAAAAGCAATCAACAA+GGG | 0.652972 | 3.4:-84133806 | MS.gene013556:intron |
| GGAAGTATATCATCCAACAC+TGG | 0.658326 | 3.4:+84135867 | None:intergenic |
| TTTCAGAAAAGCAATCAACA+AGG | 0.684568 | 3.4:-84133807 | MS.gene013556:intron |
| CCTGGTCTTACATCTCCTGG+GGG | 0.695202 | 3.4:-84134460 | MS.gene013556:CDS |
| AAACAAATCTTATTGCACCA+CGG | 0.718835 | 3.4:+84134506 | None:intergenic |
| AAGAAATTACAAGTTGACCG+TGG | 0.749697 | 3.4:-84134523 | MS.gene013556:CDS |
| CCGACCGGAGAACAATACGG+TGG | 0.755067 | 3.4:+84136879 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTATTTAATTTATTTTT+CGG | - | chr3.4:84133923-84133942 | MS.gene013556:intron | 0.0% |
| !! | TATAATATATTAAAAATCAG+CGG | + | chr3.4:84136848-84136867 | None:intergenic | 10.0% |
| !!! | GAAATTAAATCATTTTTTTA+GGG | + | chr3.4:84133996-84134015 | None:intergenic | 10.0% |
| !! | AAAACTAATATAGAAGAAAA+TGG | + | chr3.4:84133900-84133919 | None:intergenic | 15.0% |
| !! | AGAATAAAATAAAGATTGTT+AGG | + | chr3.4:84136872-84136891 | None:intergenic | 15.0% |
| !! | CATATATTATCTTGATTAAA+AGG | + | chr3.4:84135474-84135493 | None:intergenic | 15.0% |
| !!! | ATTTTATTCTATATTGTAGA+TGG | - | chr3.4:84136882-84136901 | MS.gene013556:intron | 15.0% |
| !!! | CGAAATTAAATCATTTTTTT+AGG | + | chr3.4:84133997-84134016 | None:intergenic | 15.0% |
| !! | AAATAAGTATACATACATAG+TGG | - | chr3.4:84136714-84136733 | MS.gene013556:intron | 20.0% |
| !! | AAATATGAACTTTACATTGA+TGG | + | chr3.4:84134791-84134810 | None:intergenic | 20.0% |
| !! | AATAAAAAAGATGCATAGTT+TGG | + | chr3.4:84134448-84134467 | None:intergenic | 20.0% |
| !! | AATGATATTAAAGTTAGCAA+AGG | - | chr3.4:84133672-84133691 | MS.gene013556:intron | 20.0% |
| !! | ACCAACACAAAAAAAAAAAA+AGG | + | chr3.4:84134281-84134300 | None:intergenic | 20.0% |
| !! | ATGCATATATAAAGTAAAAG+AGG | + | chr3.4:84135179-84135198 | None:intergenic | 20.0% |
| !! | ATTGTAATATTCTTTCATCT+GGG | - | chr3.4:84134829-84134848 | MS.gene013556:intron | 20.0% |
| !! | CCATTAAAATTTATACTACA+TGG | + | chr3.4:84136460-84136479 | None:intergenic | 20.0% |
| !! | TAATAAGTACATGAATACAA+AGG | + | chr3.4:84136695-84136714 | None:intergenic | 20.0% |
| !! | TATGGATATAAACTACTTAT+AGG | - | chr3.4:84134906-84134925 | MS.gene013556:intron | 20.0% |
| !! | TGTAATTTCTTCATTATATC+TGG | + | chr3.4:84135876-84135895 | None:intergenic | 20.0% |
| !! | TTGGATAGTATAACTTAATT+GGG | - | chr3.4:84136811-84136830 | MS.gene013556:intron | 20.0% |
| !! | TTTGGATAGTATAACTTAAT+TGG | - | chr3.4:84136810-84136829 | MS.gene013556:intron | 20.0% |
| !!! | AAATCATTTTTTTAGGGTTT+AGG | + | chr3.4:84133990-84134009 | None:intergenic | 20.0% |
| !!! | AATCATTTTTTTAGGGTTTA+GGG | + | chr3.4:84133989-84134008 | None:intergenic | 20.0% |
| !!! | CCATGTAGTATAAATTTTAA+TGG | - | chr3.4:84136457-84136476 | MS.gene013556:intron | 20.0% |
| !!! | CTTTTGTTTATTTGGAATTT+TGG | - | chr3.4:84136792-84136811 | MS.gene013556:intron | 20.0% |
| !!! | TCTTATCTCTTTTGTTTATT+TGG | - | chr3.4:84136784-84136803 | MS.gene013556:intron | 20.0% |
| !!! | TTTTTTGAGTAATGCATATA+TGG | - | chr3.4:84134888-84134907 | MS.gene013556:intron | 20.0% |
| ! | AAACAATCTACAAAACACAA+TGG | + | chr3.4:84136017-84136036 | None:intergenic | 25.0% |
| ! | AGATATCACTAATTGTATGT+GGG | - | chr3.4:84134314-84134333 | MS.gene013556:intron | 25.0% |
| ! | ATACTGCAGTTTAGTAATTT+AGG | + | chr3.4:84134509-84134528 | None:intergenic | 25.0% |
| ! | ATTAAAACTAGCAAAACTCT+TGG | + | chr3.4:84135321-84135340 | None:intergenic | 25.0% |
| ! | CATACAATTAGTGATATCTA+AGG | + | chr3.4:84134313-84134332 | None:intergenic | 25.0% |
| ! | GATTGTAATATTCTTTCATC+TGG | - | chr3.4:84134828-84134847 | MS.gene013556:intron | 25.0% |
| ! | TAATGAACAATTGTGTAAAG+AGG | + | chr3.4:84134055-84134074 | None:intergenic | 25.0% |
| ! | TAGAGATTAGAGATAAGATA+TGG | - | chr3.4:84136517-84136536 | MS.gene013556:intron | 25.0% |
| ! | TAGATATCACTAATTGTATG+TGG | - | chr3.4:84134313-84134332 | MS.gene013556:intron | 25.0% |
| ! | TAGGTTAATTAATAGTCACA+TGG | + | chr3.4:84134490-84134509 | None:intergenic | 25.0% |
| ! | TATCTTGATTAAAAGGTTTG+AGG | + | chr3.4:84135467-84135486 | None:intergenic | 25.0% |
| ! | TATGTGTTGAAGATATTATC+TGG | + | chr3.4:84135228-84135247 | None:intergenic | 25.0% |
| ! | TGAGAAAAATACATGATATG+AGG | + | chr3.4:84136087-84136106 | None:intergenic | 25.0% |
| ! | TTCTGTATTTGAACCATTAT+GGG | + | chr3.4:84133698-84133717 | None:intergenic | 25.0% |
| ! | TTTCTGTATTTGAACCATTA+TGG | + | chr3.4:84133699-84133718 | None:intergenic | 25.0% |
| !! | GAATACATGATAATGTTGAT+TGG | - | chr3.4:84135046-84135065 | MS.gene013556:intron | 25.0% |
| !! | TCATGTATTTTTCTCATTTC+AGG | - | chr3.4:84136091-84136110 | MS.gene013556:intron | 25.0% |
| !! | TCGTGATTCTGATAATTTTA+TGG | - | chr3.4:84134398-84134417 | MS.gene013556:intron | 25.0% |
| !! | TGACATTTTTGTAAATCCAA+TGG | + | chr3.4:84136150-84136169 | None:intergenic | 25.0% |
| !!! | AAGAGGTACTAAAAAAAAAG+TGG | + | chr3.4:84134038-84134057 | None:intergenic | 25.0% |
| !!! | AGAGGTACTAAAAAAAAAGT+GGG | + | chr3.4:84134037-84134056 | None:intergenic | 25.0% |
| !!! | CTTCCTACATTTTAAAAAAG+AGG | + | chr3.4:84135693-84135712 | None:intergenic | 25.0% |
| !!! | GCCTTTTTTTTTTTTTGTGT+TGG | - | chr3.4:84134277-84134296 | MS.gene013556:CDS | 25.0% |
| !!! | TGTACTTTTTGAACATCTTA+TGG | + | chr3.4:84133837-84133856 | None:intergenic | 25.0% |
| AAACAAATCTTATTGCACCA+CGG | + | chr3.4:84135905-84135924 | None:intergenic | 30.0% | |
| AAAGAGGCTCTTCATTTATT+TGG | + | chr3.4:84136252-84136271 | None:intergenic | 30.0% | |
| AACCATTTAGCAACTATAAG+AGG | + | chr3.4:84134577-84134596 | None:intergenic | 30.0% | |
| AACTTGCATTATCTCAATGA+TGG | - | chr3.4:84136638-84136657 | MS.gene013556:intron | 30.0% | |
| AAGAGGCTCTTCATTTATTT+GGG | + | chr3.4:84136251-84136270 | None:intergenic | 30.0% | |
| AATAAAACATAGGGCTAATG+TGG | - | chr3.4:84136491-84136510 | MS.gene013556:intron | 30.0% | |
| ACATATGGTGAATACTGAAT+AGG | - | chr3.4:84134951-84134970 | MS.gene013556:intron | 30.0% | |
| ACATTTAGATAACCTTGAGA+CGG | - | chr3.4:84135559-84135578 | MS.gene013556:intron | 30.0% | |
| ACTAAAAAAAAAGTGGGCAT+TGG | + | chr3.4:84134031-84134050 | None:intergenic | 30.0% | |
| ACTACCACTCAATAATAAGA+CGG | + | chr3.4:84135273-84135292 | None:intergenic | 30.0% | |
| AGAGAAAAACAATAGCTGTT+TGG | - | chr3.4:84134998-84135017 | MS.gene013556:intron | 30.0% | |
| ATTATCTCAATGATGGTCTT+TGG | - | chr3.4:84136645-84136664 | MS.gene013556:intron | 30.0% | |
| CTCTATACTAGAAAGTTTCT+CGG | + | chr3.4:84135027-84135046 | None:intergenic | 30.0% | |
| GAGAGAACATAAAGATCATA+CGG | - | chr3.4:84135347-84135366 | MS.gene013556:intron | 30.0% | |
| TAAAACATGGAAGAGTTTCT+AGG | - | chr3.4:84135769-84135788 | MS.gene013556:intron | 30.0% | |
| TAATATTCTTTCATCTGGGA+GGG | - | chr3.4:84134833-84134852 | MS.gene013556:intron | 30.0% | |
| TAATGACCAAAGTGAGAAAA+TGG | + | chr3.4:84135656-84135675 | None:intergenic | 30.0% | |
| TATACTACATGGCAATAAAG+TGG | + | chr3.4:84136449-84136468 | None:intergenic | 30.0% | |
| TATTAAAAATCAGCGGTAAC+TGG | + | chr3.4:84136841-84136860 | None:intergenic | 30.0% | |
| TCACGAACACTAAAAAACAA+AGG | + | chr3.4:84134738-84134757 | None:intergenic | 30.0% | |
| TCTCAAGGTTATCTAAATGT+GGG | + | chr3.4:84135559-84135578 | None:intergenic | 30.0% | |
| TTCAGAAAAGCAATCAACAA+GGG | - | chr3.4:84136602-84136621 | MS.gene013556:intron | 30.0% | |
| TTGAAGCTTAAACAGAATCA+CGG | + | chr3.4:84134347-84134366 | None:intergenic | 30.0% | |
| TTGGTGAATTAATGCATGTT+TGG | + | chr3.4:84134429-84134448 | None:intergenic | 30.0% | |
| TTGTAGATCTATTTGCTTTG+AGG | - | chr3.4:84134607-84134626 | MS.gene013556:intron | 30.0% | |
| TTTCAGAAAAGCAATCAACA+AGG | - | chr3.4:84136601-84136620 | MS.gene013556:intron | 30.0% | |
| ! | AAACAAACCATTCTAGGAAA+TGG | - | chr3.4:84135593-84135612 | MS.gene013556:intron | 30.0% |
| ! | AAAGTTTTCTCAGTTCTCAA+AGG | + | chr3.4:84135421-84135440 | None:intergenic | 30.0% |
| ! | ACATGATAATGTTGATTGGT+TGG | - | chr3.4:84135050-84135069 | MS.gene013556:intron | 30.0% |
| ! | GAAACTCTTCCATGTTTTAT+AGG | + | chr3.4:84135768-84135787 | None:intergenic | 30.0% |
| ! | TAAAGTGGAAAACTTGTTTG+TGG | + | chr3.4:84136434-84136453 | None:intergenic | 30.0% |
| ! | TTTCAGATTTTCATCTGAAG+AGG | - | chr3.4:84134181-84134200 | MS.gene013556:intron | 30.0% |
| ! | TTTTGTAAATCCAATGGCAA+GGG | + | chr3.4:84136144-84136163 | None:intergenic | 30.0% |
| ! | TTTTTGTAAATCCAATGGCA+AGG | + | chr3.4:84136145-84136164 | None:intergenic | 30.0% |
| !! | TGGTGCAATAAGATTTGTTT+TGG | - | chr3.4:84135905-84135924 | MS.gene013556:intron | 30.0% |
| !!! | CGTCCTCTTTTTTAAAATGT+AGG | - | chr3.4:84135687-84135706 | MS.gene013556:CDS | 30.0% |
| !!! | TAGCCCTATGTTTTATTTGA+GGG | + | chr3.4:84136488-84136507 | None:intergenic | 30.0% |
| !!! | TGCAATAAGATTTGTTTTGG+CGG | - | chr3.4:84135908-84135927 | MS.gene013556:intron | 30.0% |
| !!! | TTAGCCCTATGTTTTATTTG+AGG | + | chr3.4:84136489-84136508 | None:intergenic | 30.0% |
| !!! | TTGTTTTTTAGTGTTCGTGA+TGG | - | chr3.4:84134738-84134757 | MS.gene013556:intron | 30.0% |
| AAAGCAATCAACAAGGGAAT+TGG | - | chr3.4:84136608-84136627 | MS.gene013556:intron | 35.0% | |
| AACTATAAGAGGTGACTTCT+TGG | + | chr3.4:84134566-84134585 | None:intergenic | 35.0% | |
| AACTGTACTGTTCATACCAA+AGG | - | chr3.4:84135086-84135105 | MS.gene013556:intron | 35.0% | |
| AAGAAGTTCAACTACTTTCG+TGG | - | chr3.4:84136578-84136597 | MS.gene013556:intron | 35.0% | |
| AAGCAATCAACAAGGGAATT+GGG | - | chr3.4:84136609-84136628 | MS.gene013556:intron | 35.0% | |
| AATATTCTTTCATCTGGGAG+GGG | - | chr3.4:84134834-84134853 | MS.gene013556:intron | 35.0% | |
| ACTATAAGAGGTGACTTCTT+GGG | + | chr3.4:84134565-84134584 | None:intergenic | 35.0% | |
| ACTGTACTGTTCATACCAAA+GGG | - | chr3.4:84135087-84135106 | MS.gene013556:intron | 35.0% | |
| AGCAACATCAATGTTCTGAT+TGG | - | chr3.4:84135121-84135140 | MS.gene013556:intron | 35.0% | |
| AGCTCCCTCAAATAAAACAT+AGG | - | chr3.4:84136481-84136500 | MS.gene013556:intron | 35.0% | |
| ATTACTAAACTGCAGTATCC+AGG | - | chr3.4:84134511-84134530 | MS.gene013556:CDS | 35.0% | |
| CAATCATCGAAACTGAAACT+AGG | + | chr3.4:84136547-84136566 | None:intergenic | 35.0% | |
| CACCTCTTATAGTTGCTAAA+TGG | - | chr3.4:84134572-84134591 | MS.gene013556:intron | 35.0% | |
| CTCAAGGTTATCTAAATGTG+GGG | + | chr3.4:84135558-84135577 | None:intergenic | 35.0% | |
| GCTCCCTCAAATAAAACATA+GGG | - | chr3.4:84136482-84136501 | MS.gene013556:intron | 35.0% | |
| GGGTGCAATATTTGAAAAAC+AGG | - | chr3.4:84133608-84133627 | MS.gene013556:intron | 35.0% | |
| GTAATATTCTTTCATCTGGG+AGG | - | chr3.4:84134832-84134851 | MS.gene013556:intron | 35.0% | |
| GTCTCAAGGTTATCTAAATG+TGG | + | chr3.4:84135560-84135579 | None:intergenic | 35.0% | |
| TCACTAATTGTATGTGGGTT+TGG | - | chr3.4:84134319-84134338 | MS.gene013556:intron | 35.0% | |
| TTCACCATATGTGTTGAACA+CGG | + | chr3.4:84134943-84134962 | None:intergenic | 35.0% | |
| ! | AAACCATTCTAGGAAATGGA+GGG | - | chr3.4:84135597-84135616 | MS.gene013556:intron | 35.0% |
| ! | AAGAAATTACAAGTTGACCG+TGG | - | chr3.4:84135885-84135904 | MS.gene013556:CDS | 35.0% |
| ! | AAGGTTTGAGGAGTACAAAT+AGG | + | chr3.4:84135455-84135474 | None:intergenic | 35.0% |
| ! | AGGTTTGAGGAGTACAAATA+GGG | + | chr3.4:84135454-84135473 | None:intergenic | 35.0% |
| ! | ATGTCAACCAGAGAGTATAA+TGG | + | chr3.4:84136293-84136312 | None:intergenic | 35.0% |
| ! | CCATGTTTTATAGGTGCTTT+TGG | + | chr3.4:84135759-84135778 | None:intergenic | 35.0% |
| ! | GTGCTTTTGGTCAAAGTATA+GGG | + | chr3.4:84135746-84135765 | None:intergenic | 35.0% |
| !! | CCAAAAGCACCTATAAAACA+TGG | - | chr3.4:84135756-84135775 | MS.gene013556:intron | 35.0% |
| !!! | ATGTTGTTTTTGCCTAACCA+CGG | - | chr3.4:84134368-84134387 | MS.gene013556:intron | 35.0% |
| !!! | GCAATAAGATTTGTTTTGGC+GGG | - | chr3.4:84135909-84135928 | MS.gene013556:intron | 35.0% |
| AACCACCAAGGCAATAACAA+TGG | + | chr3.4:84135633-84135652 | None:intergenic | 40.0% | |
| AAGTTAGCAAAGGCCCATAA+TGG | - | chr3.4:84133682-84133701 | MS.gene013556:intron | 40.0% | |
| AATCACCACTATGAGAGAGA+GGG | - | chr3.4:84133560-84133579 | MS.gene013556:intron | 40.0% | |
| AGAGATAAGAAAAGCCACGA+TGG | + | chr3.4:84136774-84136793 | None:intergenic | 40.0% | |
| AGCAATCAACAAGGGAATTG+GGG | - | chr3.4:84136610-84136629 | MS.gene013556:intron | 40.0% | |
| CAGGTGTAAGTAGAAAACGA+AGG | - | chr3.4:84133627-84133646 | MS.gene013556:intron | 40.0% | |
| CCTCTTACCATTATACTCTC+TGG | - | chr3.4:84136283-84136302 | MS.gene013556:intron | 40.0% | |
| CTTTCTCTCAAGCATAGTGA+TGG | - | chr3.4:84135199-84135218 | MS.gene013556:intron | 40.0% | |
| GTTCATACCAAAGGGCTATA+AGG | - | chr3.4:84135095-84135114 | MS.gene013556:intron | 40.0% | |
| GTTCTGACTACAAGAACAAC+GGG | + | chr3.4:84134685-84134704 | None:intergenic | 40.0% | |
| TAGTCAGAACCATCTCAATC+TGG | - | chr3.4:84134695-84134714 | MS.gene013556:intron | 40.0% | |
| TATTTGATGTGCTACCATCG+TGG | - | chr3.4:84136757-84136776 | MS.gene013556:intron | 40.0% | |
| TCTCAATGATGGTCTTTGGA+AGG | - | chr3.4:84136649-84136668 | MS.gene013556:intron | 40.0% | |
| TCTCTCATAGTGGTGATTGA+TGG | + | chr3.4:84133558-84133577 | None:intergenic | 40.0% | |
| TGATCCGTGTTCAACACATA+TGG | - | chr3.4:84134936-84134955 | MS.gene013556:intron | 40.0% | |
| TGGAGCTACATGTTTAGGTA+GGG | - | chr3.4:84136392-84136411 | MS.gene013556:intron | 40.0% | |
| TTAGATAACCTTGAGACGGA+GGG | - | chr3.4:84135563-84135582 | MS.gene013556:intron | 40.0% | |
| TTCTCAGTTCTCAAAGGTTC+AGG | + | chr3.4:84135415-84135434 | None:intergenic | 40.0% | |
| TTTAGATAACCTTGAGACGG+AGG | - | chr3.4:84135562-84135581 | MS.gene013556:intron | 40.0% | |
| TTTCTCATTTCAGGCCATCA+TGG | - | chr3.4:84136100-84136119 | MS.gene013556:intron | 40.0% | |
| ! | AACCATTCTAGGAAATGGAG+GGG | - | chr3.4:84135598-84135617 | MS.gene013556:intron | 40.0% |
| ! | AACTTGTTTGTGGAAGGAAG+TGG | + | chr3.4:84136424-84136443 | None:intergenic | 40.0% |
| ! | ACAAGCCATTGTTATTGCCT+TGG | - | chr3.4:84135625-84135644 | MS.gene013556:intron | 40.0% |
| ! | CAAACCATTCTAGGAAATGG+AGG | - | chr3.4:84135596-84135615 | MS.gene013556:intron | 40.0% |
| ! | CCAGAGAGTATAATGGTAAG+AGG | + | chr3.4:84136286-84136305 | None:intergenic | 40.0% |
| ! | CTTTTGGTCAAAGTATAGGG+AGG | + | chr3.4:84135743-84135762 | None:intergenic | 40.0% |
| ! | GGAAGTATATCATCCAACAC+TGG | + | chr3.4:84134544-84134563 | None:intergenic | 40.0% |
| ! | GGTGCTTTTGGTCAAAGTAT+AGG | + | chr3.4:84135747-84135766 | None:intergenic | 40.0% |
| ! | GGTTCTGACTACAAGAACAA+CGG | + | chr3.4:84134686-84134705 | None:intergenic | 40.0% |
| ! | GGTTTGAGGAGTACAAATAG+GGG | + | chr3.4:84135453-84135472 | None:intergenic | 40.0% |
| ! | GTGGAAAACTTGTTTGTGGA+AGG | + | chr3.4:84136430-84136449 | None:intergenic | 40.0% |
| ! | GTGGTTCCATTTTCTCACTT+TGG | - | chr3.4:84135647-84135666 | MS.gene013556:CDS | 40.0% |
| ! | TAGATGGTAGGGTGTCAAAT+GGG | - | chr3.4:84133587-84133606 | MS.gene013556:intron | 40.0% |
| ! | TCTGCCGTCTTATTATTGAG+TGG | - | chr3.4:84135266-84135285 | MS.gene013556:intron | 40.0% |
| ! | TTAGATGGTAGGGTGTCAAA+TGG | - | chr3.4:84133586-84133605 | MS.gene013556:intron | 40.0% |
| !! | ACGTCAAAGTATTGCAGATG+AGG | - | chr3.4:84134247-84134266 | MS.gene013556:intron | 40.0% |
| AAACACAATGGCAGTACCAC+AGG | + | chr3.4:84136005-84136024 | None:intergenic | 45.0% | |
| AACATCCCTCTCTCTCATAG+TGG | + | chr3.4:84133568-84133587 | None:intergenic | 45.0% | |
| ACATTGATGGAGAAGTCGCA+AGG | + | chr3.4:84134778-84134797 | None:intergenic | 45.0% | |
| AGAACAATACGGTGGAGATC+CGG | + | chr3.4:84133524-84133543 | None:intergenic | 45.0% | |
| AGAGAGGGATGTTAGATGGT+AGG | - | chr3.4:84133575-84133594 | MS.gene013556:intron | 45.0% | |
| AGAGGTGGAGCTACATGTTT+AGG | - | chr3.4:84136387-84136406 | MS.gene013556:intron | 45.0% | |
| ATCTCCACCGTATTGTTCTC+CGG | - | chr3.4:84133525-84133544 | MS.gene013556:intron | 45.0% | |
| CAATCACCACTATGAGAGAG+AGG | - | chr3.4:84133559-84133578 | MS.gene013556:intron | 45.0% | |
| CAGACATTATGCTCTGCAGT+TGG | - | chr3.4:84135800-84135819 | MS.gene013556:intron | 45.0% | |
| GAACCATCTCAATCTGGTTG+TGG | - | chr3.4:84134701-84134720 | MS.gene013556:intron | 45.0% | |
| GAGAGGGATGTTAGATGGTA+GGG | - | chr3.4:84133576-84133595 | MS.gene013556:intron | 45.0% | |
| GGAGCTACATGTTTAGGTAG+GGG | - | chr3.4:84136393-84136412 | MS.gene013556:intron | 45.0% | |
| GGGGGAAAACAAACCATTCT+AGG | - | chr3.4:84135587-84135606 | MS.gene013556:intron | 45.0% | |
| GGTGCAAACATAATGTGTCC+TGG | - | chr3.4:84135930-84135949 | MS.gene013556:intron | 45.0% | |
| GTGAGAAAATGGAACCACCA+AGG | + | chr3.4:84135645-84135664 | None:intergenic | 45.0% | |
| GTGGAGCTACATGTTTAGGT+AGG | - | chr3.4:84136391-84136410 | MS.gene013556:intron | 45.0% | |
| TCACCACAACCAGATTGAGA+TGG | + | chr3.4:84134707-84134726 | None:intergenic | 45.0% | |
| TGAGAGAGAGGGATGTTAGA+TGG | - | chr3.4:84133571-84133590 | MS.gene013556:intron | 45.0% | |
| TGCTCAACCTTATAGCCCTT+TGG | + | chr3.4:84135105-84135124 | None:intergenic | 45.0% | |
| ! | ACCATTCTAGGAAATGGAGG+GGG | - | chr3.4:84135599-84135618 | MS.gene013556:intron | 45.0% |
| ! | AGAGGCAGAGTTTCTGAAAG+AGG | + | chr3.4:84136268-84136287 | None:intergenic | 45.0% |
| ! | AGATGGTAGGGTGTCAAATG+GGG | - | chr3.4:84133588-84133607 | MS.gene013556:intron | 45.0% |
| ! | AGCCATTGTTATTGCCTTGG+TGG | - | chr3.4:84135628-84135647 | MS.gene013556:intron | 45.0% |
| ! | CTGTTTTCCTTCAGCCATGA+TGG | + | chr3.4:84136117-84136136 | None:intergenic | 45.0% |
| !! | CTTATGGTGCGTTGAGTTGA+AGG | + | chr3.4:84133821-84133840 | None:intergenic | 45.0% |
| !!! | TTGTTTTTGCCTAACCACGG+TGG | - | chr3.4:84134371-84134390 | MS.gene013556:intron | 45.0% |
| AAACAGCATGCCCTTGCCAT+TGG | - | chr3.4:84136131-84136150 | MS.gene013556:intron | 50.0% | |
| AATTGCACCATTGCTCGTGG+TGG | - | chr3.4:84133961-84133980 | MS.gene013556:intron | 50.0% | |
| ACGCAACAGTGTAACTCTCG+AGG | + | chr3.4:84133725-84133744 | None:intergenic | 50.0% | |
| AGCAATTGCACCATTGCTCG+TGG | - | chr3.4:84133958-84133977 | MS.gene013556:intron | 50.0% | |
| AGTCGCAAGGTAGGCATGTA+CGG | + | chr3.4:84134765-84134784 | None:intergenic | 50.0% | |
| ATAACCTTGAGACGGAGGGA+GGG | - | chr3.4:84135567-84135586 | MS.gene013556:intron | 50.0% | |
| CAACCTCGTGCAATTAGAGG+TGG | - | chr3.4:84136372-84136391 | MS.gene013556:intron | 50.0% | |
| CCACAACCTCGTGCAATTAG+AGG | - | chr3.4:84136369-84136388 | MS.gene013556:intron | 50.0% | |
| CCTCTAATTGCACGAGGTTG+TGG | + | chr3.4:84136372-84136391 | None:intergenic | 50.0% | |
| CGCAACAGTGTAACTCTCGA+GGG | + | chr3.4:84133724-84133743 | None:intergenic | 50.0% | |
| CTACCGACCGGAGAACAATA+CGG | + | chr3.4:84133535-84133554 | None:intergenic | 50.0% | |
| TCCAGGACTTGAACCAGTGT+TGG | - | chr3.4:84134528-84134547 | MS.gene013556:CDS | 50.0% | |
| TCCCCCTCCATTTCCTAGAA+TGG | + | chr3.4:84135603-84135622 | None:intergenic | 50.0% | |
| TGATGGAGAAGTCGCAAGGT+AGG | + | chr3.4:84134774-84134793 | None:intergenic | 50.0% | |
| TTTCAGGCCATCATGGCTGA+AGG | - | chr3.4:84136107-84136126 | MS.gene013556:intron | 50.0% | |
| ! | GGTGTTCTGGATGAGGAAGT+GGG | - | chr3.4:84135969-84135988 | MS.gene013556:intron | 50.0% |
| ! | GTGTTCTGGATGAGGAAGTG+GGG | - | chr3.4:84135970-84135989 | MS.gene013556:intron | 50.0% |
| ! | TGTTCTGGATGAGGAAGTGG+GGG | - | chr3.4:84135971-84135990 | MS.gene013556:intron | 50.0% |
| !! | GTCCTGGTCTTACATCTCCT+GGG | - | chr3.4:84135946-84135965 | MS.gene013556:intron | 50.0% |
| !! | TCCAACACTGGTTCAAGTCC+TGG | + | chr3.4:84134532-84134551 | None:intergenic | 50.0% |
| !! | TCCTGGTCTTACATCTCCTG+GGG | - | chr3.4:84135947-84135966 | MS.gene013556:intron | 50.0% |
| !! | TGTCCTGGTCTTACATCTCC+TGG | - | chr3.4:84135945-84135964 | MS.gene013556:intron | 50.0% |
| AGAATCACGATGAGCCACCG+TGG | + | chr3.4:84134388-84134407 | None:intergenic | 55.0% | |
| CCACCGTATTGTTCTCCGGT+CGG | - | chr3.4:84133529-84133548 | MS.gene013556:intron | 55.0% | |
| GATAACCTTGAGACGGAGGG+AGG | - | chr3.4:84135566-84135585 | MS.gene013556:intron | 55.0% | |
| GCTCCACCTCTAATTGCACG+AGG | + | chr3.4:84136378-84136397 | None:intergenic | 55.0% | |
| TAACCTTGAGACGGAGGGAG+GGG | - | chr3.4:84135568-84135587 | MS.gene013556:intron | 55.0% | |
| ! | GGGTGTTCTGGATGAGGAAG+TGG | - | chr3.4:84135968-84135987 | MS.gene013556:intron | 55.0% |
| ! | GGTGATTGATGGCTACCGAC+CGG | + | chr3.4:84133547-84133566 | None:intergenic | 55.0% |
| ! | TAGGGTACCACCACGAGCAA+TGG | + | chr3.4:84133971-84133990 | None:intergenic | 55.0% |
| !! | CCTGGTCTTACATCTCCTGG+GGG | - | chr3.4:84135948-84135967 | MS.gene013556:intron | 55.0% |
| !! | TACATCTCCTGGGGGTGTTC+TGG | - | chr3.4:84135956-84135975 | MS.gene013556:intron | 55.0% |
| AACCTTGAGACGGAGGGAGG+GGG | - | chr3.4:84135569-84135588 | MS.gene013556:intron | 60.0% | |
| AGTGGGGGCAGAATGTCCTG+TGG | - | chr3.4:84135986-84136005 | MS.gene013556:intron | 60.0% | |
| CACGATGAGCCACCGTGGTT+AGG | + | chr3.4:84134383-84134402 | None:intergenic | 60.0% | |
| CCCCCAGGAGATGTAAGACC+AGG | + | chr3.4:84135951-84135970 | None:intergenic | 60.0% | |
| CCGACCGGAGAACAATACGG+TGG | + | chr3.4:84133532-84133551 | None:intergenic | 60.0% | |
| TCCTCATCCAGAACACCCCC+AGG | + | chr3.4:84135966-84135985 | None:intergenic | 60.0% | |
| !! | TCCTGGGGGTGTTCTGGATG+AGG | - | chr3.4:84135962-84135981 | MS.gene013556:intron | 60.0% |
| TTCCCCCTCCCTCCGTCTCA+AGG | + | chr3.4:84135574-84135593 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 84133512 | 84136918 | 84133512 | ID=MS.gene013556 |
| chr3.4 | mRNA | 84133512 | 84136918 | 84133512 | ID=MS.gene013556.t1;Parent=MS.gene013556 |
| chr3.4 | exon | 84136884 | 84136918 | 84136884 | ID=MS.gene013556.t1.exon1;Parent=MS.gene013556.t1 |
| chr3.4 | CDS | 84136884 | 84136918 | 84136884 | ID=cds.MS.gene013556.t1;Parent=MS.gene013556.t1 |
| chr3.4 | exon | 84136162 | 84136243 | 84136162 | ID=MS.gene013556.t1.exon2;Parent=MS.gene013556.t1 |
| chr3.4 | CDS | 84136162 | 84136243 | 84136162 | ID=cds.MS.gene013556.t1;Parent=MS.gene013556.t1 |
| chr3.4 | exon | 84135837 | 84135904 | 84135837 | ID=MS.gene013556.t1.exon3;Parent=MS.gene013556.t1 |
| chr3.4 | CDS | 84135837 | 84135904 | 84135837 | ID=cds.MS.gene013556.t1;Parent=MS.gene013556.t1 |
| chr3.4 | exon | 84135635 | 84135732 | 84135635 | ID=MS.gene013556.t1.exon4;Parent=MS.gene013556.t1 |
| chr3.4 | CDS | 84135635 | 84135732 | 84135635 | ID=cds.MS.gene013556.t1;Parent=MS.gene013556.t1 |
| chr3.4 | exon | 84134423 | 84134559 | 84134423 | ID=MS.gene013556.t1.exon5;Parent=MS.gene013556.t1 |
| chr3.4 | CDS | 84134423 | 84134559 | 84134423 | ID=cds.MS.gene013556.t1;Parent=MS.gene013556.t1 |
| chr3.4 | exon | 84134250 | 84134317 | 84134250 | ID=MS.gene013556.t1.exon6;Parent=MS.gene013556.t1 |
| chr3.4 | CDS | 84134250 | 84134317 | 84134250 | ID=cds.MS.gene013556.t1;Parent=MS.gene013556.t1 |
| chr3.4 | exon | 84133760 | 84133823 | 84133760 | ID=MS.gene013556.t1.exon7;Parent=MS.gene013556.t1 |
| chr3.4 | CDS | 84133760 | 84133823 | 84133760 | ID=cds.MS.gene013556.t1;Parent=MS.gene013556.t1 |
| chr3.4 | exon | 84133512 | 84133529 | 84133512 | ID=MS.gene013556.t1.exon8;Parent=MS.gene013556.t1 |
| chr3.4 | CDS | 84133512 | 84133529 | 84133512 | ID=cds.MS.gene013556.t1;Parent=MS.gene013556.t1 |
| Gene Sequence |
| Protein sequence |
