Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025104.t1 | PNX92058.1 | 89.6 | 193 | 18 | 2 | 1 | 193 | 1 | 191 | 8.70E-90 | 339.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025104.t1 | Q9P3T4 | 45.3 | 181 | 90 | 3 | 10 | 189 | 9 | 181 | 3.3e-29 | 129.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025104.t1 | A0A2K3MMP0 | 89.6 | 193 | 18 | 2 | 1 | 193 | 1 | 191 | 6.3e-90 | 339.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene025104 | MS.gene001986 | PPI |
| MS.gene025104 | MS.gene06667 | PPI |
| MS.gene025104 | MS.gene054186 | PPI |
| MS.gene056257 | MS.gene025104 | PPI |
| MS.gene41916 | MS.gene025104 | PPI |
| MS.gene059422 | MS.gene025104 | PPI |
| MS.gene037324 | MS.gene025104 | PPI |
| MS.gene99744 | MS.gene025104 | PPI |
| MS.gene029242 | MS.gene025104 | PPI |
| MS.gene013556 | MS.gene025104 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025104.t1 | MTR_7g023540 | 96.447 | 197 | 3 | 1 | 1 | 193 | 1 | 197 | 2.14e-135 | 377 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025104.t1 | AT5G11900 | 76.884 | 199 | 39 | 2 | 1 | 193 | 1 | 198 | 1.12e-105 | 301 |
Find 48 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAAAGAAAATTGCTCTTTC+TGG | 0.074045 | 2.3:-49974976 | None:intergenic |
| CTTTATAGAAGATGGGAAAA+AGG | 0.276019 | 2.3:+49974993 | MS.gene025104:CDS |
| CCTCCTGAATATTGCGAATT+CGG | 0.299996 | 2.3:+49971806 | MS.gene025104:CDS |
| GGAAGACGCTTGACCTCTTC+TGG | 0.307162 | 2.3:-49972941 | None:intergenic |
| GGTATAAATCGGGTACGTTT+TGG | 0.311925 | 2.3:-49971865 | None:intergenic |
| CCGCCGAATTCGCAATATTC+AGG | 0.334612 | 2.3:-49971809 | None:intergenic |
| GAAGAGGTCAAGCGTCTTCC+AGG | 0.339781 | 2.3:+49972944 | MS.gene025104:CDS |
| ATGATACCGTTAAGAAGATT+AGG | 0.342031 | 2.3:-49971887 | None:intergenic |
| AGGTGGGAAGGTAAAGAAAA+AGG | 0.345795 | 2.3:+49972964 | MS.gene025104:CDS |
| GCTTCTAGTGCTGCTTCATC+AGG | 0.349805 | 2.3:+49972063 | MS.gene025104:CDS |
| CAATTTGCTCTTTCTCAGTT+GGG | 0.350955 | 2.3:-49974270 | None:intergenic |
| GGGTTTACATTTCTCAAAAT+CGG | 0.356886 | 2.3:-49971834 | None:intergenic |
| AAGAAGATTAGGGTATAAAT+CGG | 0.388595 | 2.3:-49971876 | None:intergenic |
| TTATACCCTAATCTTCTTAA+CGG | 0.393928 | 2.3:+49971881 | MS.gene025104:CDS |
| TCAATTTGCTCTTTCTCAGT+TGG | 0.404644 | 2.3:-49974271 | None:intergenic |
| GTATAATACACGAACCGGTT+GGG | 0.409281 | 2.3:-49971765 | None:intergenic |
| CAGGAGGTAAACTGCATACT+TGG | 0.429019 | 2.3:-49971790 | None:intergenic |
| AGTGATGCTTCAAAGAAACT+TGG | 0.456701 | 2.3:+49974125 | MS.gene025104:CDS |
| GCTGATAAGTTACAAGGAAC+TGG | 0.464731 | 2.3:+49972027 | MS.gene025104:CDS |
| TGATACCGTTAAGAAGATTA+GGG | 0.480612 | 2.3:-49971886 | None:intergenic |
| AATAGTCAAAATCAAGCAGC+TGG | 0.484188 | 2.3:-49975018 | None:intergenic |
| GAGGTGAATGAGAAAGAAGT+TGG | 0.487061 | 2.3:+49971997 | MS.gene025104:intron |
| TGGCAGTATAATACACGAAC+CGG | 0.494339 | 2.3:-49971770 | None:intergenic |
| GAAAAGTTCCAAGCCTTTCA+CGG | 0.501659 | 2.3:-49973150 | None:intergenic |
| AAATCTATCACCACCGTGAA+AGG | 0.502555 | 2.3:+49973137 | MS.gene025104:CDS |
| TATAATACACGAACCGGTTG+GGG | 0.511978 | 2.3:-49971764 | None:intergenic |
| TATCACCACCGTGAAAGGCT+TGG | 0.527509 | 2.3:+49973142 | MS.gene025104:CDS |
| TACAGGAGCCTCCGTTGTCA+AGG | 0.546128 | 2.3:+49974160 | MS.gene025104:CDS |
| GCAAGAGGTTATTATTGAGA+AGG | 0.547028 | 2.3:+49973097 | MS.gene025104:CDS |
| GTGATGCTTCAAAGAAACTT+GGG | 0.547421 | 2.3:+49974126 | MS.gene025104:CDS |
| AGTATAATACACGAACCGGT+TGG | 0.550918 | 2.3:-49971766 | None:intergenic |
| AGAAGATTAGGGTATAAATC+GGG | 0.556799 | 2.3:-49971875 | None:intergenic |
| AAAGAGCAAATTGATGTACA+AGG | 0.568292 | 2.3:+49974280 | MS.gene025104:CDS |
| AATGGCAGAGAAACCCCAAC+CGG | 0.577984 | 2.3:+49971751 | None:intergenic |
| CAAGCGTCTTCCAGGTGGGA+AGG | 0.593558 | 2.3:+49972952 | MS.gene025104:CDS |
| TTTAGCAGGGAAGCCAGAAG+AGG | 0.595333 | 2.3:+49972928 | MS.gene025104:intron |
| TGGAATTCATTACAGATACA+TGG | 0.609023 | 2.3:+49974323 | MS.gene025104:CDS |
| AAGAGCAAATTGATGTACAA+GGG | 0.610474 | 2.3:+49974281 | MS.gene025104:CDS |
| AAAGTTGCTGATAAGTTACA+AGG | 0.616934 | 2.3:+49972021 | MS.gene025104:CDS |
| AGAGCAAATTGATGTACAAG+GGG | 0.617172 | 2.3:+49974282 | MS.gene025104:CDS |
| GAGGTCAAGCGTCTTCCAGG+TGG | 0.642206 | 2.3:+49972947 | MS.gene025104:CDS |
| AGGTCAAGCGTCTTCCAGGT+GGG | 0.653523 | 2.3:+49972948 | MS.gene025104:CDS |
| GGATATATCTTATGACGTCG+TGG | 0.658599 | 2.3:+49974303 | MS.gene025104:CDS |
| CCTGAATATTGCGAATTCGG+CGG | 0.662956 | 2.3:+49971809 | MS.gene025104:CDS |
| CCAATAAACCTTGACAACGG+AGG | 0.664564 | 2.3:-49974168 | None:intergenic |
| CCGAATTCGCAATATTCAGG+AGG | 0.677567 | 2.3:-49971806 | None:intergenic |
| AAGCCAATAAACCTTGACAA+CGG | 0.705389 | 2.3:-49974171 | None:intergenic |
| AAGTTCCAAGCCTTTCACGG+TGG | 0.743968 | 2.3:-49973147 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAGATATAATAAAAAAA+TGG | - | chr2.3:49973452-49973471 | None:intergenic | 10.0% |
| !! | ATTGTATAAAAAAATAAAAC+AGG | - | chr2.3:49973787-49973806 | None:intergenic | 10.0% |
| !! | AAATATCAATTGCTAAATAT+GGG | - | chr2.3:49973336-49973355 | None:intergenic | 15.0% |
| !! | AAATATTGATCTATAAGTAA+AGG | + | chr2.3:49974735-49974754 | MS.gene025104:intron | 15.0% |
| !! | AATAAATCACATTAACAAAA+AGG | - | chr2.3:49971942-49971961 | None:intergenic | 15.0% |
| !! | GTTACAATAATAAAAAGAAA+AGG | - | chr2.3:49972863-49972882 | None:intergenic | 15.0% |
| !! | TAAATATCAATTGCTAAATA+TGG | - | chr2.3:49973337-49973356 | None:intergenic | 15.0% |
| !!! | CTTATACTATTTTCTTTTAT+TGG | + | chr2.3:49974239-49974258 | MS.gene025104:intron | 15.0% |
| !!! | GAAAAACTTGTTATTTAAAT+AGG | + | chr2.3:49974457-49974476 | MS.gene025104:intron | 15.0% |
| !!! | TAATTCAACAACTTTTTAAA+TGG | + | chr2.3:49972252-49972271 | MS.gene025104:intron | 15.0% |
| !!! | TTCTCTTACTTTTTTTTTTT+TGG | + | chr2.3:49973191-49973210 | MS.gene025104:intron | 15.0% |
| !! | AAATGTGATTAACCAAATTA+AGG | + | chr2.3:49972382-49972401 | MS.gene025104:intron | 20.0% |
| !! | ATACTTTCTTTATTACCTTA+TGG | - | chr2.3:49973707-49973726 | None:intergenic | 20.0% |
| !! | ATATTTACATAGCAAAAAAC+TGG | + | chr2.3:49973650-49973669 | MS.gene025104:intron | 20.0% |
| !! | ATGCATACTATAAATAAAGT+AGG | - | chr2.3:49974848-49974867 | None:intergenic | 20.0% |
| !! | ATTTGTTTGATAGGTATATA+AGG | + | chr2.3:49972312-49972331 | MS.gene025104:intron | 20.0% |
| !! | CAAACAATTTATCCTTAATT+TGG | - | chr2.3:49972397-49972416 | None:intergenic | 20.0% |
| !! | GTTAATAGGTATATAAAGAT+TGG | - | chr2.3:49972722-49972741 | None:intergenic | 20.0% |
| !! | GTTAATCACATTTAAATTTG+TGG | - | chr2.3:49972375-49972394 | None:intergenic | 20.0% |
| !! | GTTACTAGTGTTTAAATTTA+TGG | + | chr2.3:49972663-49972682 | MS.gene025104:intron | 20.0% |
| !! | TAATAAAGATAAAGAATGAG+TGG | - | chr2.3:49974877-49974896 | None:intergenic | 20.0% |
| !! | TATCAATTAGAAATAAACCA+TGG | - | chr2.3:49974786-49974805 | None:intergenic | 20.0% |
| !! | TATTTACATAGCAAAAAACT+GGG | + | chr2.3:49973651-49973670 | MS.gene025104:intron | 20.0% |
| !! | TCCAAAAATATTATTCAACA+AGG | - | chr2.3:49973903-49973922 | None:intergenic | 20.0% |
| !! | TGCATACTATAAATAAAGTA+GGG | - | chr2.3:49974847-49974866 | None:intergenic | 20.0% |
| !!! | AAATTTGACAACTTTTCAAA+TGG | - | chr2.3:49972765-49972784 | None:intergenic | 20.0% |
| !!! | ACAATGTTTTCACATTTATT+GGG | + | chr2.3:49973802-49973821 | MS.gene025104:intron | 20.0% |
| !!! | ATAATATTTTTGGAATGTAC+CGG | + | chr2.3:49973909-49973928 | MS.gene025104:intron | 20.0% |
| !!! | ATTTCTGATTTCTTTTTTTG+TGG | + | chr2.3:49972813-49972832 | MS.gene025104:intron | 20.0% |
| !!! | CAATTTTCTTTATAGAAGAT+GGG | + | chr2.3:49974986-49975005 | MS.gene025104:CDS | 20.0% |
| !!! | CATAAGAAATTAGATTTTTG+AGG | + | chr2.3:49973541-49973560 | MS.gene025104:intron | 20.0% |
| !!! | TAATTATTGTTTTTGTGTAG+AGG | + | chr2.3:49971978-49971997 | MS.gene025104:intron | 20.0% |
| !!! | TACAATGTTTTCACATTTAT+TGG | + | chr2.3:49973801-49973820 | MS.gene025104:intron | 20.0% |
| !!! | TAGAGAACTTTTATATGATT+TGG | + | chr2.3:49974933-49974952 | MS.gene025104:intron | 20.0% |
| !!! | TATTTCTAATTGATATGAGA+AGG | + | chr2.3:49974791-49974810 | MS.gene025104:intron | 20.0% |
| !!! | TATTTTTTTATTTGGGATGA+GGG | + | chr2.3:49973355-49973374 | MS.gene025104:intron | 20.0% |
| !!! | TCCTTGTTGAATAATATTTT+TGG | + | chr2.3:49973899-49973918 | MS.gene025104:intron | 20.0% |
| !!! | TTATAGATCAATATTTTCCT+AGG | - | chr2.3:49974731-49974750 | None:intergenic | 20.0% |
| !!! | TTATTTTTTTATTTGGGATG+AGG | + | chr2.3:49973354-49973373 | MS.gene025104:intron | 20.0% |
| ! | AAAAAATGGAATGAGATTAG+TGG | - | chr2.3:49973438-49973457 | None:intergenic | 25.0% |
| ! | AAGAAGATTAGGGTATAAAT+CGG | - | chr2.3:49971879-49971898 | None:intergenic | 25.0% |
| ! | AATGACCAATAATTCAATCA+CGG | - | chr2.3:49972507-49972526 | None:intergenic | 25.0% |
| ! | ATAAAGAAAATTGCTCTTTC+TGG | - | chr2.3:49974979-49974998 | None:intergenic | 25.0% |
| ! | CAGTTCAATAAGTTGTTAAT+AGG | - | chr2.3:49972736-49972755 | None:intergenic | 25.0% |
| ! | CCTGCTAAAATATCAAAATA+GGG | - | chr2.3:49972917-49972936 | None:intergenic | 25.0% |
| ! | GGAATTGAATAATAACCAAT+AGG | - | chr2.3:49972896-49972915 | None:intergenic | 25.0% |
| ! | GGTTAATTAAGTTCAATTGA+TGG | + | chr2.3:49972684-49972703 | MS.gene025104:intron | 25.0% |
| ! | GTTTGAAAACTTGAAAATCA+AGG | - | chr2.3:49972613-49972632 | None:intergenic | 25.0% |
| ! | TATGTAGAATAGAATGAAAC+CGG | + | chr2.3:49973228-49973247 | MS.gene025104:intron | 25.0% |
| ! | TATTGATCTATAAGTAAAGG+AGG | + | chr2.3:49974738-49974757 | MS.gene025104:intron | 25.0% |
| ! | TATTTAAATATGGGAACATG+AGG | - | chr2.3:49973863-49973882 | None:intergenic | 25.0% |
| ! | TGAACAAAAATTCAAAAGCA+TGG | - | chr2.3:49972174-49972193 | None:intergenic | 25.0% |
| ! | TTATACCCTAATCTTCTTAA+CGG | + | chr2.3:49971881-49971900 | MS.gene025104:CDS | 25.0% |
| !! | GCAATTTTCTTTATAGAAGA+TGG | + | chr2.3:49974985-49975004 | MS.gene025104:CDS | 25.0% |
| !! | TTTGAATTTTTGTTCAGCAT+TGG | + | chr2.3:49972178-49972197 | MS.gene025104:intron | 25.0% |
| !!! | AAGTGTTTGATTTGTTTGAT+AGG | + | chr2.3:49972303-49972322 | MS.gene025104:intron | 25.0% |
| !!! | CCTATTTTGATATTTTAGCA+GGG | + | chr2.3:49972915-49972934 | MS.gene025104:intron | 25.0% |
| !!! | GTAAAGAAAAAGGTATGTTT+TGG | + | chr2.3:49972974-49972993 | MS.gene025104:intron | 25.0% |
| !!! | GTTTATTGGCTTATACATAA+TGG | + | chr2.3:49974182-49974201 | MS.gene025104:intron | 25.0% |
| AAAGAGCAAATTGATGTACA+AGG | + | chr2.3:49974280-49974299 | MS.gene025104:CDS | 30.0% | |
| AAAGTTGCTGATAAGTTACA+AGG | + | chr2.3:49972021-49972040 | MS.gene025104:CDS | 30.0% | |
| AACATTATCGACAGAAGAAT+GGG | + | chr2.3:49973753-49973772 | MS.gene025104:intron | 30.0% | |
| AAGAGCAAATTGATGTACAA+GGG | + | chr2.3:49974281-49974300 | MS.gene025104:CDS | 30.0% | |
| AAGTAGGAAAAGAATCCATA+AGG | + | chr2.3:49973689-49973708 | MS.gene025104:intron | 30.0% | |
| AAGTGTTTCATAAATCCCTA+AGG | - | chr2.3:49974503-49974522 | None:intergenic | 30.0% | |
| AATTAAAGCCACATACGTAA+CGG | - | chr2.3:49973982-49974001 | None:intergenic | 30.0% | |
| AGAAGATTAGGGTATAAATC+GGG | - | chr2.3:49971878-49971897 | None:intergenic | 30.0% | |
| ATCTAATTACTAGTAAGCCT+AGG | + | chr2.3:49974711-49974730 | MS.gene025104:intron | 30.0% | |
| ATGAAACACTTCATTAACCT+AGG | + | chr2.3:49974512-49974531 | MS.gene025104:intron | 30.0% | |
| ATGACCAATAATTCAATCAC+GGG | - | chr2.3:49972506-49972525 | None:intergenic | 30.0% | |
| ATGATACCGTTAAGAAGATT+AGG | - | chr2.3:49971890-49971909 | None:intergenic | 30.0% | |
| ATTCTAGATATGTTGGAGTA+CGG | + | chr2.3:49973486-49973505 | MS.gene025104:intron | 30.0% | |
| CAAAAAACTGGGTATTTGTA+TGG | + | chr2.3:49973662-49973681 | MS.gene025104:intron | 30.0% | |
| CAAGGTTAATCACATTTCTT+TGG | - | chr2.3:49972595-49972614 | None:intergenic | 30.0% | |
| CCCTGCTAAAATATCAAAAT+AGG | - | chr2.3:49972918-49972937 | None:intergenic | 30.0% | |
| CCTGAATAAGAAACTAGAAT+TGG | + | chr2.3:49973581-49973600 | MS.gene025104:intron | 30.0% | |
| CTTTATAGAAGATGGGAAAA+AGG | + | chr2.3:49974993-49975012 | MS.gene025104:CDS | 30.0% | |
| GCAATGAAATAGATTATACG+AGG | + | chr2.3:49973396-49973415 | MS.gene025104:intron | 30.0% | |
| GGGTTTACATTTCTCAAAAT+CGG | - | chr2.3:49971837-49971856 | None:intergenic | 30.0% | |
| GTCACTTGAAACTGAAATTA+GGG | + | chr2.3:49973621-49973640 | MS.gene025104:intron | 30.0% | |
| TAACCCAAATAAAAATCCAC+CGG | - | chr2.3:49974423-49974442 | None:intergenic | 30.0% | |
| TCACTTGAAACTGAAATTAG+GGG | + | chr2.3:49973622-49973641 | MS.gene025104:intron | 30.0% | |
| TCCATTTCATTTCAAAACAC+TGG | - | chr2.3:49973279-49973298 | None:intergenic | 30.0% | |
| TGATACCGTTAAGAAGATTA+GGG | - | chr2.3:49971889-49971908 | None:intergenic | 30.0% | |
| TGATCACATCAATCAAATGA+TGG | - | chr2.3:49973051-49973070 | None:intergenic | 30.0% | |
| TGCTGCATTATAAAAACCTA+TGG | - | chr2.3:49974020-49974039 | None:intergenic | 30.0% | |
| TGGAATTCATTACAGATACA+TGG | + | chr2.3:49974323-49974342 | MS.gene025104:CDS | 30.0% | |
| TTACATTACATACACGTCAT+TGG | + | chr2.3:49974060-49974079 | MS.gene025104:intron | 30.0% | |
| TTGCACAATTCTAGATATGT+TGG | + | chr2.3:49973479-49973498 | MS.gene025104:intron | 30.0% | |
| TTGTCCATCACGAAAAATAA+CGG | + | chr2.3:49974620-49974639 | MS.gene025104:intron | 30.0% | |
| ! | AGGTTTTTATAATGCAGCAA+CGG | + | chr2.3:49974021-49974040 | MS.gene025104:intron | 30.0% |
| ! | ATTTTCTTTTATTGGCGTCA+GGG | + | chr2.3:49974247-49974266 | MS.gene025104:intron | 30.0% |
| ! | TATTTTCTTTTATTGGCGTC+AGG | + | chr2.3:49974246-49974265 | MS.gene025104:intron | 30.0% |
| ! | TGTCACTTGAAACTGAAATT+AGG | + | chr2.3:49973620-49973639 | MS.gene025104:intron | 30.0% |
| ! | TTTTCAAACCTACAAGTAGT+TGG | + | chr2.3:49972624-49972643 | MS.gene025104:intron | 30.0% |
| ! | TTTTCCAAAAAACTAGGCTA+TGG | + | chr2.3:49973511-49973530 | MS.gene025104:intron | 30.0% |
| !! | ATACCGGTGGATTTTTATTT+GGG | + | chr2.3:49974417-49974436 | MS.gene025104:intron | 30.0% |
| !! | ATTTTGAGAAATGTAAACCC+TGG | + | chr2.3:49971837-49971856 | MS.gene025104:CDS | 30.0% |
| !! | CCAATTCTAGTTTCTTATTC+AGG | - | chr2.3:49973584-49973603 | None:intergenic | 30.0% |
| !! | TGAATGTTGATGATGAAGAA+TGG | + | chr2.3:49972114-49972133 | MS.gene025104:intron | 30.0% |
| !! | TTTTATTTCTTTCGATCCTC+CGG | - | chr2.3:49973250-49973269 | None:intergenic | 30.0% |
| !!! | ATTACCATAGCCTAGTTTTT+TGG | - | chr2.3:49973518-49973537 | None:intergenic | 30.0% |
| !!! | CCCTATTTTGATATTTTAGC+AGG | + | chr2.3:49972914-49972933 | MS.gene025104:intron | 30.0% |
| !!! | TACGTATGTGGCTTTAATTT+TGG | + | chr2.3:49973983-49974002 | MS.gene025104:intron | 30.0% |
| !!! | TCCAGTGTTTTGAAATGAAA+TGG | + | chr2.3:49973275-49973294 | MS.gene025104:intron | 30.0% |
| AAAAGAATAACACTCACGTC+AGG | - | chr2.3:49974349-49974368 | None:intergenic | 35.0% | |
| AAACTGGGTATTTGTATGGT+AGG | + | chr2.3:49973666-49973685 | MS.gene025104:intron | 35.0% | |
| AAAGGAGAGAAACAACATTC+AGG | - | chr2.3:49972845-49972864 | None:intergenic | 35.0% | |
| AAGCCAATAAACCTTGACAA+CGG | - | chr2.3:49974174-49974193 | None:intergenic | 35.0% | |
| ACATTATCGACAGAAGAATG+GGG | + | chr2.3:49973754-49973773 | MS.gene025104:intron | 35.0% | |
| AGAACCCGTGATTGAATTAT+TGG | + | chr2.3:49972499-49972518 | MS.gene025104:intron | 35.0% | |
| AGAGCAAATTGATGTACAAG+GGG | + | chr2.3:49974282-49974301 | MS.gene025104:CDS | 35.0% | |
| AGTGATGCTTCAAAGAAACT+TGG | + | chr2.3:49974125-49974144 | MS.gene025104:CDS | 35.0% | |
| ATGCATAGTTGCTTAGTAGT+TGG | + | chr2.3:49974207-49974226 | MS.gene025104:intron | 35.0% | |
| CAACATTATCGACAGAAGAA+TGG | + | chr2.3:49973752-49973771 | MS.gene025104:intron | 35.0% | |
| GCAAGAGGTTATTATTGAGA+AGG | + | chr2.3:49973097-49973116 | MS.gene025104:CDS | 35.0% | |
| GTATTTGTATGGTAGGAAGT+AGG | + | chr2.3:49973673-49973692 | MS.gene025104:intron | 35.0% | |
| GTGATGCTTCAAAGAAACTT+GGG | + | chr2.3:49974126-49974145 | MS.gene025104:CDS | 35.0% | |
| GTTAAAGCAGTTTGTATGCT+TGG | + | chr2.3:49972274-49972293 | MS.gene025104:intron | 35.0% | |
| TCAAATTCTGCCTAGGAAAA+TGG | + | chr2.3:49974648-49974667 | MS.gene025104:intron | 35.0% | |
| TGAGATTAGTGGCTGATATT+TGG | - | chr2.3:49973427-49973446 | None:intergenic | 35.0% | |
| TGATCTATAAGTAAAGGAGG+TGG | + | chr2.3:49974741-49974760 | MS.gene025104:intron | 35.0% | |
| TTCATTTGTCGAAGAGATAC+CGG | + | chr2.3:49974401-49974420 | MS.gene025104:intron | 35.0% | |
| TTCTAGATATGTTGGAGTAC+GGG | + | chr2.3:49973487-49973506 | MS.gene025104:intron | 35.0% | |
| TTGAAACTGAAATTAGGGGA+GGG | + | chr2.3:49973626-49973645 | MS.gene025104:intron | 35.0% | |
| TTTAACCCTCAGGTTAACAA+GGG | - | chr2.3:49972570-49972589 | None:intergenic | 35.0% | |
| ! | AGATGCGATGTTTTCTTTTC+AGG | + | chr2.3:49973070-49973089 | MS.gene025104:intron | 35.0% |
| ! | CAATTTGCTCTTTCTCAGTT+GGG | - | chr2.3:49974273-49974292 | None:intergenic | 35.0% |
| ! | CGACACTTTTATTGCATTTC+AGG | + | chr2.3:49974092-49974111 | MS.gene025104:intron | 35.0% |
| ! | GTTTTCACATTTATTGGGCT+GGG | + | chr2.3:49973807-49973826 | MS.gene025104:intron | 35.0% |
| ! | TCAATTTGCTCTTTCTCAGT+TGG | - | chr2.3:49974274-49974293 | None:intergenic | 35.0% |
| ! | TGTTTTCACATTTATTGGGC+TGG | + | chr2.3:49973806-49973825 | MS.gene025104:intron | 35.0% |
| ! | TTTGGAGTACATTTGTCCAT+AGG | + | chr2.3:49974001-49974020 | MS.gene025104:intron | 35.0% |
| ! | TTTTCACATTTATTGGGCTG+GGG | + | chr2.3:49973808-49973827 | MS.gene025104:intron | 35.0% |
| !! | GATACCGGTGGATTTTTATT+TGG | + | chr2.3:49974416-49974435 | MS.gene025104:intron | 35.0% |
| !! | TACGCTTGTGTTTTAAACAG+CGG | - | chr2.3:49974674-49974693 | None:intergenic | 35.0% |
| !!! | CAAACCGTTATTTTTCGTGA+TGG | - | chr2.3:49974627-49974646 | None:intergenic | 35.0% |
| !!! | TTTTTTATTTGGGATGAGGG+AGG | + | chr2.3:49973358-49973377 | MS.gene025104:intron | 35.0% |
| AAATCTATCACCACCGTGAA+AGG | + | chr2.3:49973137-49973156 | MS.gene025104:CDS | 40.0% | |
| ACCACAAGAAACACATCCAA+TGG | + | chr2.3:49974580-49974599 | MS.gene025104:intron | 40.0% | |
| ACCATTGGATGTGTTTCTTG+TGG | - | chr2.3:49974584-49974603 | None:intergenic | 40.0% | |
| AGACCTAGCAATCCAAAGTT+CGG | - | chr2.3:49972543-49972562 | None:intergenic | 40.0% | |
| AGATTGAATCCTGACTGGAA+CGG | + | chr2.3:49972467-49972486 | MS.gene025104:intron | 40.0% | |
| AGGTGGGAAGGTAAAGAAAA+AGG | + | chr2.3:49972964-49972983 | MS.gene025104:CDS | 40.0% | |
| AGGTTGTGTTCTATCTTCCA+TGG | + | chr2.3:49974766-49974785 | MS.gene025104:intron | 40.0% | |
| AGTATAATACACGAACCGGT+TGG | - | chr2.3:49971769-49971788 | None:intergenic | 40.0% | |
| CAGGTTTGTACATACCCAAA+CGG | + | chr2.3:49973834-49973853 | MS.gene025104:intron | 40.0% | |
| CATGCATTCCAACTACTTGT+AGG | - | chr2.3:49972635-49972654 | None:intergenic | 40.0% | |
| CCTAGGATATAACTGCTGAA+AGG | + | chr2.3:49974529-49974548 | MS.gene025104:intron | 40.0% | |
| CCTCCTGAATATTGCGAATT+CGG | + | chr2.3:49971806-49971825 | MS.gene025104:CDS | 40.0% | |
| CCTTTCAGCAGTTATATCCT+AGG | - | chr2.3:49974532-49974551 | None:intergenic | 40.0% | |
| CTACAAGTAGTTGGAATGCA+TGG | + | chr2.3:49972633-49972652 | MS.gene025104:intron | 40.0% | |
| CTTGAAACTGAAATTAGGGG+AGG | + | chr2.3:49973625-49973644 | MS.gene025104:intron | 40.0% | |
| CTTTAACCCTCAGGTTAACA+AGG | - | chr2.3:49972571-49972590 | None:intergenic | 40.0% | |
| GAAAAGTTCCAAGCCTTTCA+CGG | - | chr2.3:49973153-49973172 | None:intergenic | 40.0% | |
| GAGGTGAATGAGAAAGAAGT+TGG | + | chr2.3:49971997-49972016 | MS.gene025104:intron | 40.0% | |
| GCTGATAAGTTACAAGGAAC+TGG | + | chr2.3:49972027-49972046 | MS.gene025104:CDS | 40.0% | |
| GGATATATCTTATGACGTCG+TGG | + | chr2.3:49974303-49974322 | MS.gene025104:CDS | 40.0% | |
| GGTACTTATGGATACGTATC+CGG | - | chr2.3:49973931-49973950 | None:intergenic | 40.0% | |
| GTAGAATAGAATGAAACCGG+AGG | + | chr2.3:49973231-49973250 | MS.gene025104:intron | 40.0% | |
| GTATAATACACGAACCGGTT+GGG | - | chr2.3:49971768-49971787 | None:intergenic | 40.0% | |
| GTTTCATAAATCCCTAAGGC+TGG | - | chr2.3:49974499-49974518 | None:intergenic | 40.0% | |
| TATAAGTAAAGGAGGTGGTG+AGG | + | chr2.3:49974746-49974765 | MS.gene025104:intron | 40.0% | |
| TATAATACACGAACCGGTTG+GGG | - | chr2.3:49971767-49971786 | None:intergenic | 40.0% | |
| TCTAGATATGTTGGAGTACG+GGG | + | chr2.3:49973488-49973507 | MS.gene025104:intron | 40.0% | |
| TCTTTCCCTTGTTAACCTGA+GGG | + | chr2.3:49972562-49972581 | MS.gene025104:intron | 40.0% | |
| TGAAACTGAAATTAGGGGAG+GGG | + | chr2.3:49973627-49973646 | MS.gene025104:intron | 40.0% | |
| TGGCAGTATAATACACGAAC+CGG | - | chr2.3:49971773-49971792 | None:intergenic | 40.0% | |
| TTCCAGTCAGGATTCAATCT+CGG | - | chr2.3:49972467-49972486 | None:intergenic | 40.0% | |
| TTCCATCCAGGATTCAATCT+CGG | - | chr2.3:49972427-49972446 | None:intergenic | 40.0% | |
| TTTGGAAATCTTCCTTCTGC+AGG | + | chr2.3:49974951-49974970 | MS.gene025104:intron | 40.0% | |
| ! | ACGGGGTTTTCCAAAAAACT+AGG | + | chr2.3:49973505-49973524 | MS.gene025104:intron | 40.0% |
| ! | GGTATAAATCGGGTACGTTT+TGG | - | chr2.3:49971868-49971887 | None:intergenic | 40.0% |
| ! | GGTTTGTTCAAATTCTGCCT+AGG | + | chr2.3:49974641-49974660 | MS.gene025104:intron | 40.0% |
| ! | GTGAAAGGCTTGGAACTTTT+CGG | + | chr2.3:49973152-49973171 | MS.gene025104:CDS | 40.0% |
| ! | TTCTTTGGTCTTTAACCCTC+AGG | - | chr2.3:49972580-49972599 | None:intergenic | 40.0% |
| ! | TTTCACATTTATTGGGCTGG+GGG | + | chr2.3:49973809-49973828 | MS.gene025104:intron | 40.0% |
| ! | TTTTTCTTTACCTTCCCACC+TGG | - | chr2.3:49972965-49972984 | None:intergenic | 40.0% |
| !! | CTTGGGAAAAAGTTTGCTAC+AGG | + | chr2.3:49974143-49974162 | MS.gene025104:CDS | 40.0% |
| !! | TTCTTTTCAGGACAAGCAAG+AGG | + | chr2.3:49973082-49973101 | MS.gene025104:intron | 40.0% |
| !!! | TTTTTCGTGATGGACAACAC+TGG | - | chr2.3:49974617-49974636 | None:intergenic | 40.0% |
| AGAAGGTAGTTGTCTTCAGC+AGG | + | chr2.3:49974808-49974827 | MS.gene025104:intron | 45.0% | |
| AGTTGGAATGCATGGAGTTG+TGG | + | chr2.3:49972641-49972660 | MS.gene025104:intron | 45.0% | |
| ATAAGTACCCAATGCGTACC+GGG | + | chr2.3:49973942-49973961 | MS.gene025104:intron | 45.0% | |
| ATTTGTCGAAGAGATACCGG+TGG | + | chr2.3:49974404-49974423 | MS.gene025104:intron | 45.0% | |
| CAGGAGGTAAACTGCATACT+TGG | - | chr2.3:49971793-49971812 | None:intergenic | 45.0% | |
| CATAAGTACCCAATGCGTAC+CGG | + | chr2.3:49973941-49973960 | MS.gene025104:intron | 45.0% | |
| CCAATAAACCTTGACAACGG+AGG | - | chr2.3:49974171-49974190 | None:intergenic | 45.0% | |
| CCGAATTCGCAATATTCAGG+AGG | - | chr2.3:49971809-49971828 | None:intergenic | 45.0% | |
| CCTCCGTTGTCAAGGTTTAT+TGG | + | chr2.3:49974168-49974187 | MS.gene025104:intron | 45.0% | |
| CCTGAATATTGCGAATTCGG+CGG | + | chr2.3:49971809-49971828 | MS.gene025104:CDS | 45.0% | |
| CTCAGACAATCATTCCATCC+AGG | - | chr2.3:49972439-49972458 | None:intergenic | 45.0% | |
| CTCTTTCCCTTGTTAACCTG+AGG | + | chr2.3:49972561-49972580 | MS.gene025104:intron | 45.0% | |
| TAGTTGTCTTCAGCAGGTTG+AGG | + | chr2.3:49974814-49974833 | MS.gene025104:intron | 45.0% | |
| TCCAGTCAGGATTCAATCTC+GGG | - | chr2.3:49972466-49972485 | None:intergenic | 45.0% | |
| TCCATCCAGGATTCAATCTC+GGG | - | chr2.3:49972426-49972445 | None:intergenic | 45.0% | |
| TGTCTTTGACACCAGCCTTA+GGG | + | chr2.3:49974485-49974504 | MS.gene025104:intron | 45.0% | |
| !! | GGTACGTTTTGGATCAACCA+GGG | - | chr2.3:49971857-49971876 | None:intergenic | 45.0% |
| !! | GTAACGTGTTGCTTGCCTAT+TGG | + | chr2.3:49972878-49972897 | MS.gene025104:intron | 45.0% |
| !! | TAAACAGCGGCCATTTTCCT+AGG | - | chr2.3:49974661-49974680 | None:intergenic | 45.0% |
| !! | AAAAACTAAATATTTAAATA+TGG | - | chr2.3:49973873-49973892 | None:intergenic | 5.0% |
| !! | AAAACTAAATATTTAAATAT+GGG | - | chr2.3:49973872-49973891 | None:intergenic | 5.0% |
| !!! | TAATATTTTTATGTTTTTAA+TGG | - | chr2.3:49974557-49974576 | None:intergenic | 5.0% |
| !!! | TGATATTTATTTTTTTATTT+GGG | + | chr2.3:49973348-49973367 | MS.gene025104:intron | 5.0% |
| !!! | TTGATATTTATTTTTTTATT+TGG | + | chr2.3:49973347-49973366 | MS.gene025104:intron | 5.0% |
| AAGTTCCAAGCCTTTCACGG+TGG | - | chr2.3:49973150-49973169 | None:intergenic | 50.0% | |
| ACCCGAGATTGAATCCTGAC+TGG | + | chr2.3:49972462-49972481 | MS.gene025104:intron | 50.0% | |
| ACCCGAGATTGAATCCTGGA+TGG | + | chr2.3:49972422-49972441 | MS.gene025104:intron | 50.0% | |
| CCGCCGAATTCGCAATATTC+AGG | - | chr2.3:49971812-49971831 | None:intergenic | 50.0% | |
| CCTAGCAATCCAAAGTTCGG+CGG | - | chr2.3:49972540-49972559 | None:intergenic | 50.0% | |
| CGGTACGCATTGGGTACTTA+TGG | - | chr2.3:49973943-49973962 | None:intergenic | 50.0% | |
| CTCAAACAACCGTTCCAGTC+AGG | - | chr2.3:49972479-49972498 | None:intergenic | 50.0% | |
| CTGTCTTTGACACCAGCCTT+AGG | + | chr2.3:49974484-49974503 | MS.gene025104:intron | 50.0% | |
| GAGAACCCGAGATTGAATCC+TGG | + | chr2.3:49972418-49972437 | MS.gene025104:intron | 50.0% | |
| TATCACCACCGTGAAAGGCT+TGG | + | chr2.3:49973142-49973161 | MS.gene025104:CDS | 50.0% | |
| TTTAGCAGGGAAGCCAGAAG+AGG | + | chr2.3:49972928-49972947 | MS.gene025104:intron | 50.0% | |
| ! | ACTGGTCTACGTGTGACCAT+TGG | - | chr2.3:49974599-49974618 | None:intergenic | 50.0% |
| ! | ATTTATTGGGCTGGGGGTAC+AGG | + | chr2.3:49973815-49973834 | MS.gene025104:intron | 50.0% |
| ! | GGAACATGAGGATGCCGTTT+GGG | - | chr2.3:49973851-49973870 | None:intergenic | 50.0% |
| ! | GTTGTTTCCCGGTACGCATT+GGG | - | chr2.3:49973952-49973971 | None:intergenic | 50.0% |
| ! | TTTGGGATGAGGGAGGATCA+AGG | + | chr2.3:49973365-49973384 | MS.gene025104:intron | 50.0% |
| !! | AAGCCACATACGTAACGGAC+AGG | - | chr2.3:49973977-49973996 | None:intergenic | 50.0% |
| !! | CTCTTTCTGGAACCTGCAGA+AGG | - | chr2.3:49974966-49974985 | None:intergenic | 50.0% |
| !! | GCTTCTAGTGCTGCTTCATC+AGG | + | chr2.3:49972063-49972082 | MS.gene025104:CDS | 50.0% |
| !! | GGGTACGTTTTGGATCAACC+AGG | - | chr2.3:49971858-49971877 | None:intergenic | 50.0% |
| AGGTCAAGCGTCTTCCAGGT+GGG | + | chr2.3:49972948-49972967 | MS.gene025104:CDS | 55.0% | |
| CCAAAGTTCGGCGGATCAGT+GGG | - | chr2.3:49972531-49972550 | None:intergenic | 55.0% | |
| CCACCTGTCCGTTACGTATG+TGG | + | chr2.3:49973971-49973990 | MS.gene025104:intron | 55.0% | |
| CCGCCGAACTTTGGATTGCT+AGG | + | chr2.3:49972537-49972556 | MS.gene025104:intron | 55.0% | |
| GAAGAGGTCAAGCGTCTTCC+AGG | + | chr2.3:49972944-49972963 | MS.gene025104:CDS | 55.0% | |
| GGAAGACGCTTGACCTCTTC+TGG | - | chr2.3:49972944-49972963 | None:intergenic | 55.0% | |
| GGGAACATGAGGATGCCGTT+TGG | - | chr2.3:49973852-49973871 | None:intergenic | 55.0% | |
| TACAGGAGCCTCCGTTGTCA+AGG | + | chr2.3:49974160-49974179 | MS.gene025104:CDS | 55.0% | |
| TCCAAAGTTCGGCGGATCAG+TGG | - | chr2.3:49972532-49972551 | None:intergenic | 55.0% | |
| ! | ACGGACAGGTGGTTGTTTCC+CGG | - | chr2.3:49973963-49973982 | None:intergenic | 55.0% |
| ! | GGTTGTTTCCCGGTACGCAT+TGG | - | chr2.3:49973953-49973972 | None:intergenic | 55.0% |
| !! | CCACATACGTAACGGACAGG+TGG | - | chr2.3:49973974-49973993 | None:intergenic | 55.0% |
| CAAGCGTCTTCCAGGTGGGA+AGG | + | chr2.3:49972952-49972971 | MS.gene025104:CDS | 60.0% | |
| CCCACTGATCCGCCGAACTT+TGG | + | chr2.3:49972528-49972547 | MS.gene025104:intron | 60.0% | |
| GAGGTCAAGCGTCTTCCAGG+TGG | + | chr2.3:49972947-49972966 | MS.gene025104:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 49971752 | 49975029 | 49971752 | ID=MS.gene025104 |
| chr2.3 | mRNA | 49971752 | 49975029 | 49971752 | ID=MS.gene025104.t1;Parent=MS.gene025104 |
| chr2.3 | exon | 49971752 | 49971902 | 49971752 | ID=MS.gene025104.t1.exon1;Parent=MS.gene025104.t1 |
| chr2.3 | CDS | 49971752 | 49971902 | 49971752 | ID=cds.MS.gene025104.t1;Parent=MS.gene025104.t1 |
| chr2.3 | exon | 49971998 | 49972084 | 49971998 | ID=MS.gene025104.t1.exon2;Parent=MS.gene025104.t1 |
| chr2.3 | CDS | 49971998 | 49972084 | 49971998 | ID=cds.MS.gene025104.t1;Parent=MS.gene025104.t1 |
| chr2.3 | exon | 49972933 | 49972985 | 49972933 | ID=MS.gene025104.t1.exon3;Parent=MS.gene025104.t1 |
| chr2.3 | CDS | 49972933 | 49972985 | 49972933 | ID=cds.MS.gene025104.t1;Parent=MS.gene025104.t1 |
| chr2.3 | exon | 49973092 | 49973173 | 49973092 | ID=MS.gene025104.t1.exon4;Parent=MS.gene025104.t1 |
| chr2.3 | CDS | 49973092 | 49973173 | 49973092 | ID=cds.MS.gene025104.t1;Parent=MS.gene025104.t1 |
| chr2.3 | exon | 49974114 | 49974181 | 49974114 | ID=MS.gene025104.t1.exon5;Parent=MS.gene025104.t1 |
| chr2.3 | CDS | 49974114 | 49974181 | 49974114 | ID=cds.MS.gene025104.t1;Parent=MS.gene025104.t1 |
| chr2.3 | exon | 49974268 | 49974351 | 49974268 | ID=MS.gene025104.t1.exon6;Parent=MS.gene025104.t1 |
| chr2.3 | CDS | 49974268 | 49974351 | 49974268 | ID=cds.MS.gene025104.t1;Parent=MS.gene025104.t1 |
| chr2.3 | exon | 49974973 | 49975029 | 49974973 | ID=MS.gene025104.t1.exon7;Parent=MS.gene025104.t1 |
| chr2.3 | CDS | 49974973 | 49975029 | 49974973 | ID=cds.MS.gene025104.t1;Parent=MS.gene025104.t1 |
| Gene Sequence |
| Protein sequence |
