AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene026076

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026076.t1 MTR_7g023540 96.954 197 5 1 1 196 1 197 6.91e-137 380
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026076.t1 AT5G11900 77.387 199 41 2 1 196 1 198 3.15e-107 306

Find 49 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAAAGAAAATTGCTCTTTC+TGG 0.074045 2.2:-48473384 None:intergenic
CTTTATAGAAGATGGGAAAA+AGG 0.276019 2.2:+48473401 MS.gene026076:CDS
CCTCCTGAATATTGCGAATT+CGG 0.299996 2.2:+48470127 MS.gene026076:CDS
GGAAGACGCTTGACCTCTTC+TGG 0.307162 2.2:-48471344 None:intergenic
GGTATAAATCGGGTACGTTT+TGG 0.311925 2.2:-48470186 None:intergenic
GCTGCTGGTGCTGCTTCATC+AGG 0.328517 2.2:+48470393 MS.gene026076:CDS
CCGCCGAATTCGCAATATTC+AGG 0.334612 2.2:-48470130 None:intergenic
GAAGAGGTCAAGCGTCTTCC+AGG 0.339781 2.2:+48471347 MS.gene026076:CDS
ATGATACCGTTAAGAAGATT+AGG 0.342031 2.2:-48470208 None:intergenic
AGGTGGGAAGGTAAAGAAAA+AGG 0.345795 2.2:+48471367 MS.gene026076:CDS
CAATTTGCTCTTTCTCAGTT+GGG 0.350955 2.2:-48472665 None:intergenic
GGGTTTACATTTCTCAAAAT+CGG 0.356886 2.2:-48470155 None:intergenic
AAGAAGATTAGGGTATAAAT+CGG 0.388595 2.2:-48470197 None:intergenic
TTATACCCTAATCTTCTTAA+CGG 0.393928 2.2:+48470202 MS.gene026076:CDS
TCAATTTGCTCTTTCTCAGT+TGG 0.404644 2.2:-48472666 None:intergenic
GTATAATACACGAACCGGTT+GGG 0.409281 2.2:-48470086 None:intergenic
CAGGAGGTAAACTGCATACT+TGG 0.429019 2.2:-48470111 None:intergenic
GCTGCTTCTAGTGCTGCTGC+TGG 0.448970 2.2:+48470378 MS.gene026076:CDS
AGTGATGCTTCAAAGAAACT+TGG 0.456701 2.2:+48472520 MS.gene026076:CDS
GCTGATAAGTTACAAGGAAC+TGG 0.464731 2.2:+48470345 MS.gene026076:CDS
TGATACCGTTAAGAAGATTA+GGG 0.480612 2.2:-48470207 None:intergenic
AATAGTCAAAATCAAGCAGC+TGG 0.484188 2.2:-48473426 None:intergenic
GAGGTGAATGAGAAAGAAGT+TGG 0.487061 2.2:+48470315 MS.gene026076:intron
TGGCAGTATAATACACGAAC+CGG 0.494339 2.2:-48470091 None:intergenic
GAAAAGTTCCAAGCCTTTCA+CGG 0.501659 2.2:-48471553 None:intergenic
AAATCTATCACCACCGTGAA+AGG 0.502555 2.2:+48471540 MS.gene026076:CDS
TATAATACACGAACCGGTTG+GGG 0.511978 2.2:-48470085 None:intergenic
TATCACCACCGTGAAAGGCT+TGG 0.527509 2.2:+48471545 MS.gene026076:CDS
TACAGGAGCCTCCGTTGTCA+AGG 0.546128 2.2:+48472555 MS.gene026076:CDS
GCAAGAGGTTATTATTGAGA+AGG 0.547028 2.2:+48471500 MS.gene026076:CDS
GTGATGCTTCAAAGAAACTT+GGG 0.547421 2.2:+48472521 MS.gene026076:CDS
AGTATAATACACGAACCGGT+TGG 0.550918 2.2:-48470087 None:intergenic
AGAAGATTAGGGTATAAATC+GGG 0.556799 2.2:-48470196 None:intergenic
AAAGAGCAAATTGATGTACA+AGG 0.568292 2.2:+48472675 MS.gene026076:CDS
AATGGCAGAGAAACCCCAAC+CGG 0.577984 2.2:+48470072 None:intergenic
CAAGCGTCTTCCAGGTGGGA+AGG 0.593558 2.2:+48471355 MS.gene026076:CDS
TGGAATTCATTACAGATACA+TGG 0.609023 2.2:+48472718 MS.gene026076:CDS
AAGAGCAAATTGATGTACAA+GGG 0.610474 2.2:+48472676 MS.gene026076:CDS
AAAGTTGCTGATAAGTTACA+AGG 0.616934 2.2:+48470339 MS.gene026076:CDS
AGAGCAAATTGATGTACAAG+GGG 0.617172 2.2:+48472677 MS.gene026076:CDS
TTTGGCAGGGAAGCCAGAAG+AGG 0.636115 2.2:+48471331 MS.gene026076:intron
GAGGTCAAGCGTCTTCCAGG+TGG 0.642206 2.2:+48471350 MS.gene026076:CDS
AGGTCAAGCGTCTTCCAGGT+GGG 0.653523 2.2:+48471351 MS.gene026076:CDS
GGATATATCTTATGACGTCG+TGG 0.658599 2.2:+48472698 MS.gene026076:CDS
CCTGAATATTGCGAATTCGG+CGG 0.662956 2.2:+48470130 MS.gene026076:CDS
CCAATAAACCTTGACAACGG+AGG 0.664564 2.2:-48472563 None:intergenic
CCGAATTCGCAATATTCAGG+AGG 0.677567 2.2:-48470127 None:intergenic
AAGCCAATAAACCTTGACAA+CGG 0.705389 2.2:-48472566 None:intergenic
AAGTTCCAAGCCTTTCACGG+TGG 0.743968 2.2:-48471550 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTGTATAAAAAAATAAAAC+AGG - chr2.2:48472185-48472204 None:intergenic 10.0%
!!! CTTATACTATTTTTTTTTAT+TGG + chr2.2:48472634-48472653 MS.gene026076:intron 10.0%
!! AAATATCAATTGCTAAATAT+GGG - chr2.2:48471736-48471755 None:intergenic 15.0%
!! AGAAAGATACAATAAAAAAA+TGG - chr2.2:48471852-48471871 None:intergenic 15.0%
!! ATCACAATTACAAAAAATAA+CGG + chr2.2:48473043-48473062 MS.gene026076:intron 15.0%
!! TAAATATCAATTGCTAAATA+TGG - chr2.2:48471737-48471756 None:intergenic 15.0%
!!! AATAAGAAATTAGATTTTTG+AGG + chr2.2:48471939-48471958 MS.gene026076:intron 15.0%
!!! CAAAAACATGTTATTTAAAT+AGG + chr2.2:48472852-48472871 MS.gene026076:intron 15.0%
!!! TGTAATCATAATGTTTTTAA+TGG - chr2.2:48472952-48472971 None:intergenic 15.0%
!!! TTATAGATCTATATTTTTCT+AGG - chr2.2:48473154-48473173 None:intergenic 15.0%
!!! TTATTCCATAACTTTTTAAA+TGG + chr2.2:48470569-48470588 MS.gene026076:intron 15.0%
!! AAATGTGATTAACCAAATTA+GGG + chr2.2:48470680-48470699 MS.gene026076:intron 20.0%
!! AATAATTTAAAAGCTACAAG+AGG - chr2.2:48471069-48471088 None:intergenic 20.0%
!! AATATAGATCTATAACTAAG+AGG + chr2.2:48473159-48473178 MS.gene026076:intron 20.0%
!! ATATTTACATAGCAAAAAAC+TGG + chr2.2:48472048-48472067 MS.gene026076:intron 20.0%
!! ATTTGAAAAGTTGAAAATCA+AGG - chr2.2:48470875-48470894 None:intergenic 20.0%
!! CTTTACCATTTAAAAAGTTA+TGG - chr2.2:48470577-48470596 None:intergenic 20.0%
!! GGTTAATTAAGTTCAATTTA+TGG + chr2.2:48470946-48470965 MS.gene026076:intron 20.0%
!! GTTAATCACATTTAAATTTG+TGG - chr2.2:48470673-48470692 None:intergenic 20.0%
!! TAAATGTGATTAACCAAATT+AGG + chr2.2:48470679-48470698 MS.gene026076:intron 20.0%
!! TATTTACATAGCAAAAAACT+GGG + chr2.2:48472049-48472068 MS.gene026076:intron 20.0%
!! TCCAAAAATATTATTCAACA+GGG - chr2.2:48472298-48472317 None:intergenic 20.0%
!! TTAAGTTCAATTTATGGTTA+AGG + chr2.2:48470952-48470971 MS.gene026076:intron 20.0%
!! TTCCAAAAATATTATTCAAC+AGG - chr2.2:48472299-48472318 None:intergenic 20.0%
!!! AATTCCCTATTTTGATATTT+TGG + chr2.2:48471313-48471332 MS.gene026076:intron 20.0%
!!! ATAATATTTTTGGAATGTAC+CGG + chr2.2:48472304-48472323 MS.gene026076:intron 20.0%
!!! ATTTCTGATTTCTTTTTTTG+AGG + chr2.2:48471216-48471235 MS.gene026076:intron 20.0%
!!! CAATTTTCTTTATAGAAGAT+GGG + chr2.2:48473394-48473413 MS.gene026076:CDS 20.0%
!!! GTTATTTTTTGTAATTGTGA+TGG - chr2.2:48473044-48473063 None:intergenic 20.0%
!!! TAATTATTGTTTTTGTGTAG+AGG + chr2.2:48470296-48470315 MS.gene026076:intron 20.0%
!!! TATTTTTTTATTTGGGATGA+GGG + chr2.2:48471755-48471774 MS.gene026076:intron 20.0%
!!! TCTTTCTCTTACTTTTTTTT+TGG + chr2.2:48471591-48471610 MS.gene026076:intron 20.0%
!!! TTATTTTTTTATTTGGGATG+AGG + chr2.2:48471754-48471773 MS.gene026076:intron 20.0%
! AAAAAATGGAATGAGATTAG+TGG - chr2.2:48471838-48471857 None:intergenic 25.0%
! AAGAAGATTAGGGTATAAAT+CGG - chr2.2:48470200-48470219 None:intergenic 25.0%
! AATGTGATTAACCAAATTAG+GGG + chr2.2:48470681-48470700 MS.gene026076:intron 25.0%
! ATAAAGAAAATTGCTCTTTC+TGG - chr2.2:48473387-48473406 None:intergenic 25.0%
! ATACTTTCTTTACTACCTTA+TGG - chr2.2:48472105-48472124 None:intergenic 25.0%
! CCTGAATAAGAAAATAGAAT+TGG + chr2.2:48471979-48471998 MS.gene026076:intron 25.0%
! GGAATTGAATAATAACCAAT+AGG - chr2.2:48471299-48471318 None:intergenic 25.0%
! GTTAATAGTGTTCAAATTTG+TGG + chr2.2:48470925-48470944 MS.gene026076:intron 25.0%
! TATCAATTAGAAATAGACCA+TGG - chr2.2:48473207-48473226 None:intergenic 25.0%
! TATGACCAATAATTCAATCT+CGG - chr2.2:48470765-48470784 None:intergenic 25.0%
! TATGTAGAATAGAATGAAAC+CGG + chr2.2:48471628-48471647 MS.gene026076:intron 25.0%
! TATTGTGTTAGAAATGCATT+GGG + chr2.2:48471085-48471104 MS.gene026076:intron 25.0%
! TATTTAAATATGGGAACATG+AGG - chr2.2:48472261-48472280 None:intergenic 25.0%
! TGAACAAAAACTCAAAATCA+TGG - chr2.2:48470494-48470513 None:intergenic 25.0%
! TTATACCCTAATCTTCTTAA+CGG + chr2.2:48470202-48470221 MS.gene026076:CDS 25.0%
! TTATTGTGTTAGAAATGCAT+TGG + chr2.2:48471084-48471103 MS.gene026076:intron 25.0%
! TTTCATTTATAAAGAACCTG+TGG - chr2.2:48473296-48473315 None:intergenic 25.0%
!! ACAATGTTTTCACGTTTATT+GGG + chr2.2:48472200-48472219 MS.gene026076:intron 25.0%
!! CCAATTCTATTTTCTTATTC+AGG - chr2.2:48471982-48472001 None:intergenic 25.0%
!! CTAATTTGCATATTCATTTG+TGG + chr2.2:48472784-48472803 MS.gene026076:intron 25.0%
!! GCAATTTTCTTTATAGAAGA+TGG + chr2.2:48473393-48473412 MS.gene026076:CDS 25.0%
!! TACAATGTTTTCACGTTTAT+TGG + chr2.2:48472199-48472218 MS.gene026076:intron 25.0%
!! TAGAGAACTTTTATGTGATT+TGG + chr2.2:48473337-48473356 MS.gene026076:intron 25.0%
!! TCCCTGTTGAATAATATTTT+TGG + chr2.2:48472294-48472313 MS.gene026076:intron 25.0%
!!! ATACTGGTGGATTTTTATTT+GGG + chr2.2:48472812-48472831 MS.gene026076:intron 25.0%
!!! ATTTTTTTTTATTGGCGTCA+GGG + chr2.2:48472642-48472661 MS.gene026076:intron 25.0%
!!! GTAAAGAAAAAGGTATGTTT+TGG + chr2.2:48471377-48471396 MS.gene026076:intron 25.0%
!!! GTTTATTGGCTTATACATAA+TGG + chr2.2:48472577-48472596 MS.gene026076:intron 25.0%
!!! TATTTTTTTTTATTGGCGTC+AGG + chr2.2:48472641-48472660 MS.gene026076:intron 25.0%
!!! TTTTATTTCTTTCAATCCTC+CGG - chr2.2:48471650-48471669 None:intergenic 25.0%
AAAGAGCAAATTGATGTACA+AGG + chr2.2:48472675-48472694 MS.gene026076:CDS 30.0%
AAAGTTGCTGATAAGTTACA+AGG + chr2.2:48470339-48470358 MS.gene026076:CDS 30.0%
AACATTATCGACAGAAGAAT+GGG + chr2.2:48472151-48472170 MS.gene026076:intron 30.0%
AAGAGCAAATTGATGTACAA+GGG + chr2.2:48472676-48472695 MS.gene026076:CDS 30.0%
AAGTAGGAAAAGAATCCATA+AGG + chr2.2:48472087-48472106 MS.gene026076:intron 30.0%
AAGTGTTTCATAAATCCCTT+AGG - chr2.2:48472898-48472917 None:intergenic 30.0%
AATTAAAGCCACATACGTAA+CGG - chr2.2:48472377-48472396 None:intergenic 30.0%
ACATAAAAGTTCTCTAGTCT+TGG - chr2.2:48473333-48473352 None:intergenic 30.0%
AGAAGATTAGGGTATAAATC+GGG - chr2.2:48470199-48470218 None:intergenic 30.0%
AGTTCATATACTTGGTTGAT+AGG + chr2.2:48470598-48470617 MS.gene026076:intron 30.0%
ATAGATCTATAACTAAGAGG+TGG + chr2.2:48473162-48473181 MS.gene026076:intron 30.0%
ATGAAACACTTCATTAACCT+AGG + chr2.2:48472907-48472926 MS.gene026076:intron 30.0%
ATGACCAATAATTCAATCTC+GGG - chr2.2:48470764-48470783 None:intergenic 30.0%
ATGATACCGTTAAGAAGATT+AGG - chr2.2:48470211-48470230 None:intergenic 30.0%
ATGCATAGTTGCTTAATAGT+TGG + chr2.2:48472602-48472621 MS.gene026076:intron 30.0%
ATTCTAGATATGTTGGAGTA+CGG + chr2.2:48471884-48471903 MS.gene026076:intron 30.0%
CAAAAAACTGGGTATTTGTA+TGG + chr2.2:48472060-48472079 MS.gene026076:intron 30.0%
CAAGGTTAATTGCATTTCTT+TGG - chr2.2:48470857-48470876 None:intergenic 30.0%
CACTAATATTGTGTTTGTAG+TGG - chr2.2:48471134-48471153 None:intergenic 30.0%
CCTGCCAAAATATCAAAATA+GGG - chr2.2:48471320-48471339 None:intergenic 30.0%
CTTTATAGAAGATGGGAAAA+AGG + chr2.2:48473401-48473420 MS.gene026076:CDS 30.0%
GGGTTTACATTTCTCAAAAT+CGG - chr2.2:48470158-48470177 None:intergenic 30.0%
GTCACTTGAAACTGAAATTA+GGG + chr2.2:48472019-48472038 MS.gene026076:intron 30.0%
GTCTATAGGTATATGAAGAT+TGG - chr2.2:48470984-48471003 None:intergenic 30.0%
TCACTTGAAACTGAAATTAG+GGG + chr2.2:48472020-48472039 MS.gene026076:intron 30.0%
TCCATTTCATTTCAAAACAC+TGG - chr2.2:48471679-48471698 None:intergenic 30.0%
TGATACCGTTAAGAAGATTA+GGG - chr2.2:48470210-48470229 None:intergenic 30.0%
TGATCACATCAATCAAATGA+TGG - chr2.2:48471454-48471473 None:intergenic 30.0%
TGCATAATATAAAGAGAGCT+AGG - chr2.2:48473268-48473287 None:intergenic 30.0%
TGCTGCATTATAAAAACCTA+TGG - chr2.2:48472415-48472434 None:intergenic 30.0%
TGGAATTCATTACAGATACA+TGG + chr2.2:48472718-48472737 MS.gene026076:CDS 30.0%
TTACATTACATACACGTCAT+TGG + chr2.2:48472455-48472474 MS.gene026076:intron 30.0%
TTGCACAATTCTAGATATGT+TGG + chr2.2:48471877-48471896 MS.gene026076:intron 30.0%
! CAAACAATTTTCCCCTAATT+TGG - chr2.2:48470695-48470714 None:intergenic 30.0%
! CAACTTTTCAAATCTACAAG+TGG + chr2.2:48470882-48470901 MS.gene026076:intron 30.0%
! CATAAAAGTTCTCTAGTCTT+GGG - chr2.2:48473332-48473351 None:intergenic 30.0%
! CGACACTTTTATTACATTTC+AGG + chr2.2:48472487-48472506 MS.gene026076:intron 30.0%
! TGTCACTTGAAACTGAAATT+AGG + chr2.2:48472018-48472037 MS.gene026076:intron 30.0%
! TTTTCCAAAAAACTAGGCTA+TGG + chr2.2:48471909-48471928 MS.gene026076:intron 30.0%
!! ACTTGGTTGATAGGTATATA+AGG + chr2.2:48470607-48470626 MS.gene026076:intron 30.0%
!! ATTTTGAGAAATGTAAACCC+TGG + chr2.2:48470158-48470177 MS.gene026076:CDS 30.0%
!! TGAATGTTGATGATGAAGAA+TGG + chr2.2:48470446-48470465 MS.gene026076:intron 30.0%
!! TTTGAGTTTTTGTTCAGCAT+TGG + chr2.2:48470498-48470517 MS.gene026076:intron 30.0%
!!! ATTACCATAGCCTAGTTTTT+TGG - chr2.2:48471916-48471935 None:intergenic 30.0%
!!! CCTATTTTGATATTTTGGCA+GGG + chr2.2:48471318-48471337 MS.gene026076:intron 30.0%
!!! GATACTGGTGGATTTTTATT+TGG + chr2.2:48472811-48472830 MS.gene026076:intron 30.0%
!!! TACGTATGTGGCTTTAATTT+TGG + chr2.2:48472378-48472397 MS.gene026076:intron 30.0%
!!! TCCAGTGTTTTGAAATGAAA+TGG + chr2.2:48471675-48471694 MS.gene026076:intron 30.0%
AAAAGAATAACACTCACGTC+AGG - chr2.2:48472744-48472763 None:intergenic 35.0%
AAACTGGGTATTTGTATGGT+AGG + chr2.2:48472064-48472083 MS.gene026076:intron 35.0%
AACAGAGAGAAACAACATTC+AGG - chr2.2:48471248-48471267 None:intergenic 35.0%
AAGCCAATAAACCTTGACAA+CGG - chr2.2:48472569-48472588 None:intergenic 35.0%
ACACAGCATAAGTTGTCTAT+AGG - chr2.2:48470998-48471017 None:intergenic 35.0%
ACATTATCGACAGAAGAATG+GGG + chr2.2:48472152-48472171 MS.gene026076:intron 35.0%
AGAACCCGAGATTGAATTAT+TGG + chr2.2:48470757-48470776 MS.gene026076:intron 35.0%
AGAGCAAATTGATGTACAAG+GGG + chr2.2:48472677-48472696 MS.gene026076:CDS 35.0%
AGTGATGCTTCAAAGAAACT+TGG + chr2.2:48472520-48472539 MS.gene026076:CDS 35.0%
CAACATTATCGACAGAAGAA+TGG + chr2.2:48472150-48472169 MS.gene026076:intron 35.0%
CCCTGCCAAAATATCAAAAT+AGG - chr2.2:48471321-48471340 None:intergenic 35.0%
GAAATCTATCTTCCTTCTTC+AGG + chr2.2:48473359-48473378 MS.gene026076:intron 35.0%
GCAAGAGGTTATTATTGAGA+AGG + chr2.2:48471500-48471519 MS.gene026076:CDS 35.0%
GCAATGAAATAGATTCTACG+AGG + chr2.2:48471796-48471815 MS.gene026076:intron 35.0%
GGTAAAGCAGTTCATATACT+TGG + chr2.2:48470590-48470609 MS.gene026076:intron 35.0%
GTATTTGTATGGTAGGAAGT+AGG + chr2.2:48472071-48472090 MS.gene026076:intron 35.0%
GTGATGCTTCAAAGAAACTT+GGG + chr2.2:48472521-48472540 MS.gene026076:CDS 35.0%
TATATTATGCATCATGCCAC+AGG + chr2.2:48473277-48473296 MS.gene026076:intron 35.0%
TGAGATTAGTGGCTGATATT+TGG - chr2.2:48471827-48471846 None:intergenic 35.0%
TTCATTTGTGGAAGAGATAC+TGG + chr2.2:48472796-48472815 MS.gene026076:intron 35.0%
TTCTAGATATGTTGGAGTAC+GGG + chr2.2:48471885-48471904 MS.gene026076:intron 35.0%
TTGAAACTGAAATTAGGGGA+GGG + chr2.2:48472024-48472043 MS.gene026076:intron 35.0%
! AGATGCGATGTTTTCTTTTC+AGG + chr2.2:48471473-48471492 MS.gene026076:intron 35.0%
! CAATTTGCTCTTTCTCAGTT+GGG - chr2.2:48472668-48472687 None:intergenic 35.0%
! TCAATTTGCTCTTTCTCAGT+TGG - chr2.2:48472669-48472688 None:intergenic 35.0%
! TTTGGAGTACATTTGTCCAT+AGG + chr2.2:48472396-48472415 MS.gene026076:intron 35.0%
!! TACGCTAGTGTTTTAAACAG+CGG - chr2.2:48473097-48473116 None:intergenic 35.0%
!!! CCCTATTTTGATATTTTGGC+AGG + chr2.2:48471317-48471336 MS.gene026076:intron 35.0%
!!! TTTTTTATTTGGGATGAGGG+AGG + chr2.2:48471758-48471777 MS.gene026076:intron 35.0%
AAATCTATCACCACCGTGAA+AGG + chr2.2:48471540-48471559 MS.gene026076:CDS 40.0%
AGGTGGGAAGGTAAAGAAAA+AGG + chr2.2:48471367-48471386 MS.gene026076:CDS 40.0%
AGGTTGTGTTCTATCTTCCA+TGG + chr2.2:48473187-48473206 MS.gene026076:intron 40.0%
AGTATAATACACGAACCGGT+TGG - chr2.2:48470090-48470109 None:intergenic 40.0%
ATTTGTGGAAGAGATACTGG+TGG + chr2.2:48472799-48472818 MS.gene026076:intron 40.0%
CAGGTTTGTACATACCCAAA+CGG + chr2.2:48472232-48472251 MS.gene026076:intron 40.0%
CCTCCTGAATATTGCGAATT+CGG + chr2.2:48470127-48470146 MS.gene026076:CDS 40.0%
CCTTTCAGCACTTATATCCT+AGG - chr2.2:48472927-48472946 None:intergenic 40.0%
CTACAAGTGGTTGAAATGCA+TGG + chr2.2:48470895-48470914 MS.gene026076:intron 40.0%
CTTGAAACTGAAATTAGGGG+AGG + chr2.2:48472023-48472042 MS.gene026076:intron 40.0%
GAAAAGTTCCAAGCCTTTCA+CGG - chr2.2:48471556-48471575 None:intergenic 40.0%
GAGGTGAATGAGAAAGAAGT+TGG + chr2.2:48470315-48470334 MS.gene026076:intron 40.0%
GCTGATAAGTTACAAGGAAC+TGG + chr2.2:48470345-48470364 MS.gene026076:CDS 40.0%
GGATATATCTTATGACGTCG+TGG + chr2.2:48472698-48472717 MS.gene026076:CDS 40.0%
GGTACTTATGGATACGTATC+CGG - chr2.2:48472326-48472345 None:intergenic 40.0%
GTAGAATAGAATGAAACCGG+AGG + chr2.2:48471631-48471650 MS.gene026076:intron 40.0%
GTATAATACACGAACCGGTT+GGG - chr2.2:48470089-48470108 None:intergenic 40.0%
GTTAGAAATGCATTGGGAAG+TGG + chr2.2:48471091-48471110 MS.gene026076:intron 40.0%
GTTTCATAAATCCCTTAGGC+TGG - chr2.2:48472894-48472913 None:intergenic 40.0%
GTTTGTAGTGGCGTTTAGTT+AGG - chr2.2:48471122-48471141 None:intergenic 40.0%
TATAATACACGAACCGGTTG+GGG - chr2.2:48470088-48470107 None:intergenic 40.0%
TCTAGATATGTTGGAGTACG+GGG + chr2.2:48471886-48471905 MS.gene026076:intron 40.0%
TCTATAACTAAGAGGTGGTG+AGG + chr2.2:48473167-48473186 MS.gene026076:intron 40.0%
TGAAACTGAAATTAGGGGAG+GGG + chr2.2:48472025-48472044 MS.gene026076:intron 40.0%
TGGCAGTATAATACACGAAC+CGG - chr2.2:48470094-48470113 None:intergenic 40.0%
TTAAACCCTCAGGTTACCAA+GGG - chr2.2:48470832-48470851 None:intergenic 40.0%
TTCCAGTCAGGATTCAATCT+CGG - chr2.2:48470725-48470744 None:intergenic 40.0%
! AAGCTACAAGAGGTAGCTTT+TGG - chr2.2:48471059-48471078 None:intergenic 40.0%
! ACGGGGTTTTCCAAAAAACT+AGG + chr2.2:48471903-48471922 MS.gene026076:intron 40.0%
! GGTATAAATCGGGTACGTTT+TGG - chr2.2:48470189-48470208 None:intergenic 40.0%
! GGTTTGTTCAAAATCTGCCT+AGG + chr2.2:48473064-48473083 MS.gene026076:intron 40.0%
! GTGAAAGGCTTGGAACTTTT+CGG + chr2.2:48471555-48471574 MS.gene026076:CDS 40.0%
! GTTTTCACGTTTATTGGGCT+GGG + chr2.2:48472205-48472224 MS.gene026076:intron 40.0%
! TGTTTTCACGTTTATTGGGC+TGG + chr2.2:48472204-48472223 MS.gene026076:intron 40.0%
! TTTTCACGTTTATTGGGCTG+GGG + chr2.2:48472206-48472225 MS.gene026076:intron 40.0%
! TTTTTCTTTACCTTCCCACC+TGG - chr2.2:48471368-48471387 None:intergenic 40.0%
!! CCTAGGATATAAGTGCTGAA+AGG + chr2.2:48472924-48472943 MS.gene026076:intron 40.0%
!! CTTGGGAAAAAGTTTGCTAC+AGG + chr2.2:48472538-48472557 MS.gene026076:CDS 40.0%
!! GTAATTGTGATGGACAACAC+TGG - chr2.2:48473034-48473053 None:intergenic 40.0%
!! TTCTTTGGTCTTAAACCCTC+AGG - chr2.2:48470842-48470861 None:intergenic 40.0%
!! TTCTTTTCAGGACAAGCAAG+AGG + chr2.2:48471485-48471504 MS.gene026076:intron 40.0%
ACTGGATGTGTTTCTTGTGG+TGG - chr2.2:48472998-48473017 None:intergenic 45.0%
ATAAGTACCCAATGCGTACC+GGG + chr2.2:48472337-48472356 MS.gene026076:intron 45.0%
ATTGCTAGGTCTCTTTCCCT+TGG + chr2.2:48470813-48470832 MS.gene026076:intron 45.0%
CAGGAGGTAAACTGCATACT+TGG - chr2.2:48470114-48470133 None:intergenic 45.0%
CATAAGTACCCAATGCGTAC+CGG + chr2.2:48472336-48472355 MS.gene026076:intron 45.0%
CCAATAAACCTTGACAACGG+AGG - chr2.2:48472566-48472585 None:intergenic 45.0%
CCGAATTCGCAATATTCAGG+AGG - chr2.2:48470130-48470149 None:intergenic 45.0%
CCTCCGTTGTCAAGGTTTAT+TGG + chr2.2:48472563-48472582 MS.gene026076:intron 45.0%
CCTGAATATTGCGAATTCGG+CGG + chr2.2:48470130-48470149 MS.gene026076:CDS 45.0%
CTGGATGTGTTTCTTGTGGT+GGG - chr2.2:48472997-48473016 None:intergenic 45.0%
CTTAAACCCTCAGGTTACCA+AGG - chr2.2:48470833-48470852 None:intergenic 45.0%
TAAACAGCGGTCATTCTCCT+AGG - chr2.2:48473084-48473103 None:intergenic 45.0%
TCCAGTCAGGATTCAATCTC+GGG - chr2.2:48470724-48470743 None:intergenic 45.0%
TGTCTTTGACACCAGCCTAA+GGG + chr2.2:48472880-48472899 MS.gene026076:intron 45.0%
TTATCGACAGAAGAATGGGG+CGG + chr2.2:48472155-48472174 MS.gene026076:intron 45.0%
TTGAATCCTGACTGGAACGA+TGG + chr2.2:48470728-48470747 MS.gene026076:intron 45.0%
! AGCACTGGATGTGTTTCTTG+TGG - chr2.2:48473001-48473020 None:intergenic 45.0%
! TCTTTCCCTTGGTAACCTGA+GGG + chr2.2:48470824-48470843 MS.gene026076:intron 45.0%
! TTTCACGTTTATTGGGCTGG+GGG + chr2.2:48472207-48472226 MS.gene026076:intron 45.0%
! TTTTCTTTTGTCCAGACGCG+CGG + chr2.2:48471029-48471048 MS.gene026076:intron 45.0%
!! CTCTTTCTGGAACCTGAAGA+AGG - chr2.2:48473374-48473393 None:intergenic 45.0%
!! GGTACGTTTTGGATCAACCA+GGG - chr2.2:48470178-48470197 None:intergenic 45.0%
!! AAAAACTAAATATTTAAATA+TGG - chr2.2:48472271-48472290 None:intergenic 5.0%
!! AAAACTAAATATTTAAATAT+GGG - chr2.2:48472270-48472289 None:intergenic 5.0%
!! ATAAATCAAATAAAAAAAAA+AGG - chr2.2:48470263-48470282 None:intergenic 5.0%
!!! TGATATTTATTTTTTTATTT+GGG + chr2.2:48471748-48471767 MS.gene026076:intron 5.0%
!!! TTGATATTTATTTTTTTATT+TGG + chr2.2:48471747-48471766 MS.gene026076:intron 5.0%
AAGTTCCAAGCCTTTCACGG+TGG - chr2.2:48471553-48471572 None:intergenic 50.0%
ACCCGAGATTGAATCCTGAC+TGG + chr2.2:48470720-48470739 MS.gene026076:intron 50.0%
AGAAGCTAGCAGTCTTCAGC+AGG + chr2.2:48473229-48473248 MS.gene026076:intron 50.0%
AGACCTAGCAATCCGGAGTT+TGG - chr2.2:48470805-48470824 None:intergenic 50.0%
CAACCAAACTCCGGATTGCT+AGG + chr2.2:48470799-48470818 MS.gene026076:intron 50.0%
CAATCCGGAGTTTGGTTGGT+CGG - chr2.2:48470797-48470816 None:intergenic 50.0%
CATACCGACCAACCAAACTC+CGG + chr2.2:48470790-48470809 MS.gene026076:intron 50.0%
CCGCCGAATTCGCAATATTC+AGG - chr2.2:48470133-48470152 None:intergenic 50.0%
CGGTACGCATTGGGTACTTA+TGG - chr2.2:48472338-48472357 None:intergenic 50.0%
CTAGCAATCCGGAGTTTGGT+TGG - chr2.2:48470801-48470820 None:intergenic 50.0%
CTCAAACCATCGTTCCAGTC+AGG - chr2.2:48470737-48470756 None:intergenic 50.0%
CTGTCTTTGACACCAGCCTA+AGG + chr2.2:48472879-48472898 MS.gene026076:intron 50.0%
GGGAAAGAGACCTAGCAATC+CGG - chr2.2:48470812-48470831 None:intergenic 50.0%
GTAACGCGTTGCTTGCCTAT+TGG + chr2.2:48471281-48471300 MS.gene026076:intron 50.0%
TAGCAGTCTTCAGCAGGTTG+AGG + chr2.2:48473235-48473254 MS.gene026076:intron 50.0%
TATCACCACCGTGAAAGGCT+TGG + chr2.2:48471545-48471564 MS.gene026076:CDS 50.0%
! ACTGGTCTACGCATAAGCAC+TGG - chr2.2:48473016-48473035 None:intergenic 50.0%
! CTCTTTCCCTTGGTAACCTG+AGG + chr2.2:48470823-48470842 MS.gene026076:intron 50.0%
! GGAACATGAGGATGCCGTTT+GGG - chr2.2:48472249-48472268 None:intergenic 50.0%
! GTTGTTTCCCGGTACGCATT+GGG - chr2.2:48472347-48472366 None:intergenic 50.0%
! TTTGGGATGAGGGAGGATCA+AGG + chr2.2:48471765-48471784 MS.gene026076:intron 50.0%
!! AAGCCACATACGTAACGGAC+AGG - chr2.2:48472372-48472391 None:intergenic 50.0%
!! GGGTACGTTTTGGATCAACC+AGG - chr2.2:48470179-48470198 None:intergenic 50.0%
AGGTCAAGCGTCTTCCAGGT+GGG + chr2.2:48471351-48471370 MS.gene026076:CDS 55.0%
CCACCTGTCCGTTACGTATG+TGG + chr2.2:48472366-48472385 MS.gene026076:intron 55.0%
GAAGAGGTCAAGCGTCTTCC+AGG + chr2.2:48471347-48471366 MS.gene026076:CDS 55.0%
GGAAGACGCTTGACCTCTTC+TGG - chr2.2:48471347-48471366 None:intergenic 55.0%
GGGAACATGAGGATGCCGTT+TGG - chr2.2:48472250-48472269 None:intergenic 55.0%
TACAGGAGCCTCCGTTGTCA+AGG + chr2.2:48472555-48472574 MS.gene026076:CDS 55.0%
TTTGGCAGGGAAGCCAGAAG+AGG + chr2.2:48471331-48471350 MS.gene026076:intron 55.0%
! ACGGACAGGTGGTTGTTTCC+CGG - chr2.2:48472358-48472377 None:intergenic 55.0%
! GGTTGTTTCCCGGTACGCAT+TGG - chr2.2:48472348-48472367 None:intergenic 55.0%
! GTTTATTGGGCTGGGGGTAC+AGG + chr2.2:48472213-48472232 MS.gene026076:intron 55.0%
!! CCACATACGTAACGGACAGG+TGG - chr2.2:48472369-48472388 None:intergenic 55.0%
CAAGCGTCTTCCAGGTGGGA+AGG + chr2.2:48471355-48471374 MS.gene026076:CDS 60.0%
GAGGTCAAGCGTCTTCCAGG+TGG + chr2.2:48471350-48471369 MS.gene026076:CDS 60.0%
! CTTTTGGACTTCCGCGCGTC+TGG - chr2.2:48471043-48471062 None:intergenic 60.0%
! GCTGCTTCTAGTGCTGCTGC+TGG + chr2.2:48470378-48470397 MS.gene026076:CDS 60.0%
!! GCTGCTGGTGCTGCTTCATC+AGG + chr2.2:48470393-48470412 MS.gene026076:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 48470073 48473437 48470073 ID=MS.gene026076
chr2.2 mRNA 48470073 48473437 48470073 ID=MS.gene026076.t1;Parent=MS.gene026076
chr2.2 exon 48470073 48470223 48470073 ID=MS.gene026076.t1.exon1;Parent=MS.gene026076.t1
chr2.2 CDS 48470073 48470223 48470073 ID=cds.MS.gene026076.t1;Parent=MS.gene026076.t1
chr2.2 exon 48470316 48470414 48470316 ID=MS.gene026076.t1.exon2;Parent=MS.gene026076.t1
chr2.2 CDS 48470316 48470414 48470316 ID=cds.MS.gene026076.t1;Parent=MS.gene026076.t1
chr2.2 exon 48471339 48471388 48471339 ID=MS.gene026076.t1.exon3;Parent=MS.gene026076.t1
chr2.2 CDS 48471339 48471388 48471339 ID=cds.MS.gene026076.t1;Parent=MS.gene026076.t1
chr2.2 exon 48471495 48471576 48471495 ID=MS.gene026076.t1.exon4;Parent=MS.gene026076.t1
chr2.2 CDS 48471495 48471576 48471495 ID=cds.MS.gene026076.t1;Parent=MS.gene026076.t1
chr2.2 exon 48472509 48472576 48472509 ID=MS.gene026076.t1.exon5;Parent=MS.gene026076.t1
chr2.2 CDS 48472509 48472576 48472509 ID=cds.MS.gene026076.t1;Parent=MS.gene026076.t1
chr2.2 exon 48472663 48472746 48472663 ID=MS.gene026076.t1.exon6;Parent=MS.gene026076.t1
chr2.2 CDS 48472663 48472746 48472663 ID=cds.MS.gene026076.t1;Parent=MS.gene026076.t1
chr2.2 exon 48473381 48473437 48473381 ID=MS.gene026076.t1.exon7;Parent=MS.gene026076.t1
chr2.2 CDS 48473381 48473437 48473381 ID=cds.MS.gene026076.t1;Parent=MS.gene026076.t1
Gene Sequence

>MS.gene026076

ATGGCAGAGAAACCCCAACCGGTTCGTGTATTATACTGCCAAGTATGCAGTTTACCTCCTGAATATTGCGAATTCGGCGGATCCGATTTTGAGAAATGTAAACCCTGGTTGATCCAAAACGTACCCGATTTATACCCTAATCTTCTTAACGGTATCATCTTATCTTATTCTTCTTAATTTGATTGATCCTTTTTTTTTTATTTGATTTATTCTATTAATTAATTAATTATTGTTTTTGTGTAGAGGTGAATGAGAAAGAAGTTGGTAAAGTTGCTGATAAGTTACAAGGAACTGGTATTTCTTCTGCTGCTTCTAGTGCTGCTGCTGGTGCTGCTTCATCAGGTTTGTTTTTGATTTTTTTTTTTTTTGTAATTGAATGTTGATGATGAAGAATGGTTTTGTTAATTTGTGAGTGTAACCATGATTTTGAGTTTTTGTTCAGCATTGGATTTTGTTTTCATCAGAAATGTTATTTGAACATCAATTTGAGACAGTATTATTCCATAACTTTTTAAATGGTAAAGCAGTTCATATACTTGGTTGATAGGTATATAAGGCATCACAACTTATTATTAAGTATTTACTGAGCTTTATTAGCCACAAATTTAAATGTGATTAACCAAATTAGGGGAAAATTGTTTGAGAGAACCCGAGATTGAATCCTGACTGGAACGATGGTTTGAGAGAACCCGAGATTGAATTATTGGTCATACTTTACATACCGACCAACCAAACTCCGGATTGCTAGGTCTCTTTCCCTTGGTAACCTGAGGGTTTAAGACCAAAGAAATGCAATTAACCTTGATTTTCAACTTTTCAAATCTACAAGTGGTTGAAATGCATGGAATTGTAGTTAATAGTGTTCAAATTTGTGGTTAATTAAGTTCAATTTATGGTTAAGGAGTTATCCAATCTTCATATACCTATAGACAACTTATGCTGTGTTTGTTACAGTGTTTTCTTTTGTCCAGACGCGCGGAAGTCCAAAAGCTACCTCTTGTAGCTTTTAAATTATTGTGTTAGAAATGCATTGGGAAGTGGTATTTCCTAACTAAACGCCACTACAAACACAATATTAGTGAACTGCGTTAACTATTTGAAAAGTTGTCAAGTTTTGTTGTCTGAAATTGATTTTCAAATAGCATTTCTGATTTCTTTTTTTGAGGTTGTGACCTGAATGTTGTTTCTCTCTGTTTTTTTTTATTATTGTAACGCGTTGCTTGCCTATTGGTTATTATTCAATTCCCTATTTTGATATTTTGGCAGGGAAGCCAGAAGAGGTCAAGCGTCTTCCAGGTGGGAAGGTAAAGAAAAAGGTATGTTTTGGAATTCTTGAATGCAATCTTCATTTGATATTAAATGTTTACGATTACAATTACCATCATTTGATTGATGTGATCAGATGCGATGTTTTCTTTTCAGGACAAGCAAGAGGTTATTATTGAGAAGGTCGTACGTAACAAACGAAAATCTATCACCACCGTGAAAGGCTTGGAACTTTTCGGTGAGTTGTATTTTTCTTTCTCTTACTTTTTTTTTGGATATTTAATGATTATATGTAGAATAGAATGAAACCGGAGGATTGAAAGAAATAAAAAAATTTCCAGTGTTTTGAAATGAAATGGAATGATAAGAGATTGTTAACACTAAGTGTTTTCATCCCATATTTAGCAATTGATATTTATTTTTTTATTTGGGATGAGGGAGGATCAAGGTATTAGATGCAATGAAATAGATTCTACGAGGTTCTACCAAATATCAGCCACTAATCTCATTCCATTTTTTTATTGTATCTTTCTCTACGTTGCACAATTCTAGATATGTTGGAGTACGGGGTTTTCCAAAAAACTAGGCTATGGTAATATAAATAAGAAATTAGATTTTTGAGGAAAAAGAACTTGAATTACCTGAATAAGAAAATAGAATTGGTACTGAATTGCTACTCTGTCACTTGAAACTGAAATTAGGGGAGGGGATATTTACATAGCAAAAAACTGGGTATTTGTATGGTAGGAAGTAGGAAAAGAATCCATAAGGTAGTAAAGAAAGTATCGACATTTATTTTACACAAAAGTATCAACATTATCGACAGAAGAATGGGGCGGAAAACCTGTTTTATTTTTTTATACAATGTTTTCACGTTTATTGGGCTGGGGGTACAGGTTTGTACATACCCAAACGGCATCCTCATGTTCCCATATTTAAATATTTAGTTTTTTTTTCCCTGTTGAATAATATTTTTGGAATGTACCGGATACGTATCCATAAGTACCCAATGCGTACCGGGAAACAACCACCTGTCCGTTACGTATGTGGCTTTAATTTTGGAGTACATTTGTCCATAGGTTTTTATAATGCAGCAACGATAGCTTTGAGTTATCATTACATTACATACACGTCATTGGTATTTAACTCGACACTTTTATTACATTTCAGGTGTCAAGCTCAGTGATGCTTCAAAGAAACTTGGGAAAAAGTTTGCTACAGGAGCCTCCGTTGTCAAGGTTTATTGGCTTATACATAATGGACATGCATAGTTGCTTAATAGTTGGATATAATCACTTATACTATTTTTTTTTATTGGCGTCAGGGCCCAACTGAGAAAGAGCAAATTGATGTACAAGGGGATATATCTTATGACGTCGTGGAATTCATTACAGATACATGGCCTGACGTGAGTGTTATTCTTTTTCAGTAATACAATTTCTGTTCTAATTTGCATATTCATTTGTGGAAGAGATACTGGTGGATTTTTATTTGGGTTATAAAATTTCATCTACAAAAACATGTTATTTAAATAGGCAATCTGTCTTTGACACCAGCCTAAGGGATTTATGAAACACTTCATTAACCTAGGATATAAGTGCTGAAAGGAGCCATTAAAAACATTATGATTACAAAAATAATCATTAAAAATATTACCCACCACAAGAAACACATCCAGTGCTTATGCGTAGACCAGTGTTGTCCATCACAATTACAAAAAATAACGGTTTGTTCAAAATCTGCCTAGGAGAATGACCGCTGTTTAAAACACTAGCGTAGACAAGATACAAGTATAATCTAGTTAGTAGTAAACCTAGAAAAATATAGATCTATAACTAAGAGGTGGTGAGGTTGTGTTCTATCTTCCATGGTCTATTTCTAATTGATATGAGAAGCTAGCAGTCTTCAGCAGGTTGAGGTTAATTTCCTAGCTCTCTTTATATTATGCATCATGCCACAGGTTCTTTATAAATGAAAATTGTGTTTTTATCCCAAGACTAGAGAACTTTTATGTGATTTGGAAATCTATCTTCCTTCTTCAGGTTCCAGAAAGAGCAATTTTCTTTATAGAAGATGGGAAAAAGGTTCCAGCTGCTTGA
Protein sequence

>MS.gene026076.t1

MAEKPQPVRVLYCQVCSLPPEYCEFGGSDFEKCKPWLIQNVPDLYPNLLNEVNEKEVGKVADKLQGTGISSAASSAAAGAASSGKPEEVKRLPGGKVKKKDKQEVIIEKVVRNKRKSITTVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDVVEFITDTWPDVPERAIFFIEDGKKVPAA