Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85635.t1 | XP_024625195.1 | 97.4 | 196 | 5 | 0 | 1 | 196 | 1 | 196 | 9.10E-79 | 303.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85635.t1 | Q9P3T4 | 46.7 | 184 | 86 | 3 | 10 | 192 | 9 | 181 | 3.1e-27 | 123.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85635.t1 | A0A396GUN7 | 97.4 | 196 | 5 | 0 | 1 | 196 | 1 | 196 | 6.6e-79 | 303.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene85635 | MS.gene054186 | PPI |
| MS.gene85635 | MS.gene056257 | PPI |
| MS.gene85635 | MS.gene037324 | PPI |
| MS.gene059422 | MS.gene85635 | PPI |
| MS.gene85635 | MS.gene99744 | PPI |
| MS.gene85635 | MS.gene029242 | PPI |
| MS.gene85635 | MS.gene41916 | PPI |
| MS.gene85635 | MS.gene001986 | PPI |
| MS.gene013556 | MS.gene85635 | PPI |
| MS.gene85635 | MS.gene06667 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85635.t1 | MTR_7g023540 | 96.954 | 197 | 5 | 1 | 1 | 196 | 1 | 197 | 6.91e-137 | 380 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85635.t1 | AT5G11900 | 77.387 | 199 | 41 | 2 | 1 | 196 | 1 | 198 | 3.15e-107 | 306 |
Find 50 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAAAGAAAATTGCTCTTTC+TGG | 0.074045 | 2.1:+48050384 | None:intergenic |
| CTTTATAGAAGATGGGAAAA+AGG | 0.276019 | 2.1:-48050367 | MS.gene85635:CDS |
| CCTCCTGAATATTGCGAATT+CGG | 0.299996 | 2.1:-48053657 | MS.gene85635:CDS |
| GGAAGACGCTTGACCTCTTC+TGG | 0.307162 | 2.1:+48052424 | None:intergenic |
| GGTATAAATCGGGTACGTTT+TGG | 0.311925 | 2.1:+48053598 | None:intergenic |
| GCTGCTGGTGCTGCTTCATC+AGG | 0.328517 | 2.1:-48053385 | MS.gene85635:intron |
| CCGCCGAATTCGCAATATTC+AGG | 0.334612 | 2.1:+48053654 | None:intergenic |
| GAAGAGGTCAAGCGTCTTCC+AGG | 0.339781 | 2.1:-48052421 | MS.gene85635:CDS |
| ATGATACCGTTAAGAAGATT+AGG | 0.342031 | 2.1:+48053576 | None:intergenic |
| AGGTGGGAAGGTAAAGAAAA+AGG | 0.345795 | 2.1:-48052401 | MS.gene85635:intron |
| CAATTTGCTCTTTCTCAGTT+GGG | 0.350955 | 2.1:+48051067 | None:intergenic |
| GGGTTTACATTTCTCAAAAT+CGG | 0.356886 | 2.1:+48053629 | None:intergenic |
| AAGAAGATTAGGGTATAAAT+CGG | 0.388595 | 2.1:+48053587 | None:intergenic |
| TTATACCCTAATCTTCTTAA+CGG | 0.393928 | 2.1:-48053582 | MS.gene85635:intron |
| TCAATTTGCTCTTTCTCAGT+TGG | 0.404644 | 2.1:+48051066 | None:intergenic |
| GTATAATACACGAACCGGTT+GGG | 0.409281 | 2.1:+48053698 | None:intergenic |
| CAGGAGGTAAACTGCATACT+TGG | 0.429019 | 2.1:+48053673 | None:intergenic |
| GCTGCTTCTAGTGCTGCTGC+TGG | 0.448970 | 2.1:-48053400 | MS.gene85635:CDS |
| AGTGATGCTTCAAAGAAACT+TGG | 0.456701 | 2.1:-48051211 | MS.gene85635:CDS |
| GAGGTGAATGAGAAGGAAGT+TGG | 0.464532 | 2.1:-48053463 | MS.gene85635:CDS |
| GCTGATAAGTTACAAGGAAC+TGG | 0.464731 | 2.1:-48053433 | MS.gene85635:CDS |
| TGATACCGTTAAGAAGATTA+GGG | 0.480612 | 2.1:+48053577 | None:intergenic |
| AATAGTCAAAATCAAGCAGC+TGG | 0.484188 | 2.1:+48050342 | None:intergenic |
| TGGCAGTATAATACACGAAC+CGG | 0.494339 | 2.1:+48053693 | None:intergenic |
| GAAAAGTTCCAAGCCTTTCA+CGG | 0.501659 | 2.1:+48052213 | None:intergenic |
| AAATCTATCACCACCGTGAA+AGG | 0.502555 | 2.1:-48052226 | MS.gene85635:CDS |
| TTGTGTAGAGGTGAATGAGA+AGG | 0.511630 | 2.1:-48053470 | MS.gene85635:intron |
| TATAATACACGAACCGGTTG+GGG | 0.511978 | 2.1:+48053699 | None:intergenic |
| TATCACCACCGTGAAAGGCT+TGG | 0.527509 | 2.1:-48052221 | MS.gene85635:CDS |
| TACAGGAGCCTCCGTTGTCA+AGG | 0.546128 | 2.1:-48051176 | MS.gene85635:intron |
| GCAAGAGGTTATTATTGAGA+AGG | 0.547028 | 2.1:-48052266 | MS.gene85635:CDS |
| GTGATGCTTCAAAGAAACTT+GGG | 0.547421 | 2.1:-48051210 | MS.gene85635:CDS |
| AGTATAATACACGAACCGGT+TGG | 0.550918 | 2.1:+48053697 | None:intergenic |
| AGAAGATTAGGGTATAAATC+GGG | 0.556799 | 2.1:+48053588 | None:intergenic |
| AAAGAGCAAATTGATGTACA+AGG | 0.568292 | 2.1:-48051057 | MS.gene85635:CDS |
| AATGGCAGAGAAACCCCAAC+CGG | 0.577984 | 2.1:-48053712 | MS.gene85635:CDS |
| CAAGCGTCTTCCAGGTGGGA+AGG | 0.593558 | 2.1:-48052413 | MS.gene85635:CDS |
| TGGAATTCATTACAGATACA+TGG | 0.609023 | 2.1:-48051014 | MS.gene85635:CDS |
| AAGAGCAAATTGATGTACAA+GGG | 0.610474 | 2.1:-48051056 | MS.gene85635:CDS |
| AAAGTTGCTGATAAGTTACA+AGG | 0.616934 | 2.1:-48053439 | MS.gene85635:CDS |
| AGAGCAAATTGATGTACAAG+GGG | 0.617172 | 2.1:-48051055 | MS.gene85635:CDS |
| TTTGGCAGGGAAGCCAGAAG+AGG | 0.636115 | 2.1:-48052437 | MS.gene85635:intron |
| GAGGTCAAGCGTCTTCCAGG+TGG | 0.642206 | 2.1:-48052418 | MS.gene85635:CDS |
| AGGTCAAGCGTCTTCCAGGT+GGG | 0.653523 | 2.1:-48052417 | MS.gene85635:CDS |
| GGATATATCTTATGACGTCG+TGG | 0.658599 | 2.1:-48051034 | MS.gene85635:CDS |
| CCTGAATATTGCGAATTCGG+CGG | 0.662956 | 2.1:-48053654 | MS.gene85635:CDS |
| CCAATAAACCTTGACAACGG+AGG | 0.664564 | 2.1:+48051168 | None:intergenic |
| CCGAATTCGCAATATTCAGG+AGG | 0.677567 | 2.1:+48053657 | None:intergenic |
| AAGCCAATAAACCTTGACAA+CGG | 0.705389 | 2.1:+48051165 | None:intergenic |
| AAGTTCCAAGCCTTTCACGG+TGG | 0.743968 | 2.1:+48052216 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATCACAATAAAAAAAAAA+AGG | + | chr2.1:48050543-48050562 | None:intergenic | 10.0% |
| !! | ATTGTATAAAAAAATAAAAC+AGG | + | chr2.1:48052518-48052537 | None:intergenic | 10.0% |
| !!! | ACTTATACTATTTTTTTTAT+TGG | - | chr2.1:48052966-48052985 | MS.gene85635:intron | 10.0% |
| !!! | TGTTTTTTTTTTTTTTTTGA+AGG | - | chr2.1:48052022-48052041 | MS.gene85635:intron | 10.0% |
| !! | AAAGAGATACAATAAAAAAA+TGG | + | chr2.1:48052183-48052202 | None:intergenic | 15.0% |
| !! | AAATATCAATTGCTAAATAT+GGG | + | chr2.1:48052067-48052086 | None:intergenic | 15.0% |
| !! | ATCACAATTACAAAAAATAA+CGG | - | chr2.1:48053375-48053394 | MS.gene85635:intron | 15.0% |
| !! | ATTAATCACATTCAAATTTA+TGG | + | chr2.1:48050966-48050985 | None:intergenic | 15.0% |
| !! | TAAATATCAATTGCTAAATA+TGG | + | chr2.1:48052068-48052087 | None:intergenic | 15.0% |
| !!! | AATAAGAAATTAGATTTTTG+AGG | - | chr2.1:48052272-48052291 | MS.gene85635:CDS | 15.0% |
| !!! | ATGTTGTTTGAATATAAATT+TGG | - | chr2.1:48050826-48050845 | MS.gene85635:intron | 15.0% |
| !!! | GAAAAACATGTTATTTAAAT+AGG | - | chr2.1:48053184-48053203 | MS.gene85635:intron | 15.0% |
| !!! | TGTAATCATAATGTTTTTAA+TGG | + | chr2.1:48053284-48053303 | None:intergenic | 15.0% |
| !!! | TGTTGTTTGAATATAAATTT+GGG | - | chr2.1:48050827-48050846 | MS.gene85635:intron | 15.0% |
| !! | ATACTTTCTTTATTACCTTA+TGG | + | chr2.1:48052438-48052457 | None:intergenic | 20.0% |
| !! | ATATTTACATAGCAAAAAAC+TGG | - | chr2.1:48052381-48052400 | MS.gene85635:intron | 20.0% |
| !! | ATTTGAAAAGTTGAAAATCA+AGG | + | chr2.1:48051168-48051187 | None:intergenic | 20.0% |
| !! | GAATGTGATTAATCAAATTA+AGG | - | chr2.1:48050973-48050992 | MS.gene85635:intron | 20.0% |
| !! | GGTTAATTAAGTTCAATTTA+TGG | - | chr2.1:48051239-48051258 | MS.gene85635:intron | 20.0% |
| !! | TATTTACATAGCAAAAAACT+GGG | - | chr2.1:48052382-48052401 | MS.gene85635:intron | 20.0% |
| !! | TCCAAAAATATTATTCAACA+AGG | + | chr2.1:48052631-48052650 | None:intergenic | 20.0% |
| !! | TTAAGTTCAATTTATGGTTA+AGG | - | chr2.1:48051245-48051264 | MS.gene85635:intron | 20.0% |
| !!! | AATTCCCTATTTTGATATTT+TGG | - | chr2.1:48051609-48051628 | MS.gene85635:intron | 20.0% |
| !!! | ATAATATTTTTGGAATGTAC+CGG | - | chr2.1:48052637-48052656 | MS.gene85635:intron | 20.0% |
| !!! | ATTTCTGATTTCTTTTTTTG+AGG | - | chr2.1:48051509-48051528 | MS.gene85635:intron | 20.0% |
| !!! | CAATTTTCTTTATAGAAGAT+GGG | - | chr2.1:48053690-48053709 | MS.gene85635:CDS | 20.0% |
| !!! | GTTATTTTTTGTAATTGTGA+TGG | + | chr2.1:48053376-48053395 | None:intergenic | 20.0% |
| !!! | TAATTATTGTTTTTGTGTAG+AGG | - | chr2.1:48050582-48050601 | MS.gene85635:intron | 20.0% |
| !!! | TATTTTTTTATTTGGGATGA+GGG | - | chr2.1:48052086-48052105 | MS.gene85635:intron | 20.0% |
| !!! | TATTTTTTTTATTGGTGTCA+GGG | - | chr2.1:48052974-48052993 | MS.gene85635:intron | 20.0% |
| !!! | TCCTTGTTGAATAATATTTT+TGG | - | chr2.1:48052627-48052646 | MS.gene85635:intron | 20.0% |
| !!! | TCTGTAACTTTTATATGATT+TGG | - | chr2.1:48053633-48053652 | MS.gene85635:CDS | 20.0% |
| !!! | TTATAGATCGATATTTTTCT+AGG | + | chr2.1:48053486-48053505 | None:intergenic | 20.0% |
| !!! | TTATTTTTTTATTTGGGATG+AGG | - | chr2.1:48052085-48052104 | MS.gene85635:intron | 20.0% |
| !!! | TTCTTTCTCTTACTTTTTTT+TGG | - | chr2.1:48051888-48051907 | MS.gene85635:intron | 20.0% |
| ! | AAAAAATGGAATGAGATTAG+TGG | + | chr2.1:48052169-48052188 | None:intergenic | 25.0% |
| ! | AAGAAGATTAGGGTATAAAT+CGG | + | chr2.1:48050480-48050499 | None:intergenic | 25.0% |
| ! | AAGAATTTAAAAGCTACAAG+AGG | + | chr2.1:48051362-48051381 | None:intergenic | 25.0% |
| ! | AATATCGATCTATAACTAAG+AGG | - | chr2.1:48053491-48053510 | MS.gene85635:intron | 25.0% |
| ! | ACTTGGATAATAGTTATATC+AGG | - | chr2.1:48050903-48050922 | MS.gene85635:intron | 25.0% |
| ! | ATAAAGAAAATTGCTCTTTC+TGG | + | chr2.1:48053683-48053702 | None:intergenic | 25.0% |
| ! | CCTGAATAAGAAAATAGAAT+TGG | - | chr2.1:48052312-48052331 | MS.gene85635:intron | 25.0% |
| ! | CTTTAACCATTTAAAAACTG+TGG | + | chr2.1:48050873-48050892 | None:intergenic | 25.0% |
| ! | GGAATTGAATAATAACCAAT+AGG | + | chr2.1:48051595-48051614 | None:intergenic | 25.0% |
| ! | GTTAATAGTGTTCAAATTTG+TGG | - | chr2.1:48051218-48051237 | MS.gene85635:CDS | 25.0% |
| ! | TATCAATTAGAAATAGACCA+TGG | + | chr2.1:48053539-48053558 | None:intergenic | 25.0% |
| ! | TATGTAGAATAGAATGAAAC+CGG | - | chr2.1:48051925-48051944 | MS.gene85635:intron | 25.0% |
| ! | TATTTAAATATGGGAACATG+AGG | + | chr2.1:48052595-48052614 | None:intergenic | 25.0% |
| ! | TTATACCCTAATCTTCTTAA+CGG | - | chr2.1:48050482-48050501 | MS.gene85635:intron | 25.0% |
| !! | AAACTTGACAACTTTTCAAA+TGG | + | chr2.1:48051461-48051480 | None:intergenic | 25.0% |
| !! | ACAATGTTTTCACGTTTATT+GGG | - | chr2.1:48052533-48052552 | MS.gene85635:intron | 25.0% |
| !! | AGTATTCCACAGTTTTTAAA+TGG | - | chr2.1:48050864-48050883 | MS.gene85635:intron | 25.0% |
| !! | CCAATTCTATTTTCTTATTC+AGG | + | chr2.1:48052315-48052334 | None:intergenic | 25.0% |
| !! | CTAATTTGCATATTCATTTG+TGG | - | chr2.1:48053116-48053135 | MS.gene85635:intron | 25.0% |
| !! | GCAATTTTCTTTATAGAAGA+TGG | - | chr2.1:48053689-48053708 | MS.gene85635:CDS | 25.0% |
| !! | TACAATGTTTTCACGTTTAT+TGG | - | chr2.1:48052532-48052551 | MS.gene85635:intron | 25.0% |
| !!! | ATACTGGTGGATTTTTATTT+GGG | - | chr2.1:48053144-48053163 | MS.gene85635:intron | 25.0% |
| !!! | CTATTTTTTTTATTGGTGTC+AGG | - | chr2.1:48052973-48052992 | MS.gene85635:intron | 25.0% |
| !!! | GAGTTTTTTTTTTTCAGCAT+TGG | - | chr2.1:48050788-48050807 | MS.gene85635:intron | 25.0% |
| !!! | GTAAAGAAAAAGGTATGTTT+TGG | - | chr2.1:48051673-48051692 | MS.gene85635:intron | 25.0% |
| !!! | GTTTATTGGCTTATACATAA+TGG | - | chr2.1:48052910-48052929 | MS.gene85635:intron | 25.0% |
| !!! | TTTTATTTCTTTCAATCCTC+CGG | + | chr2.1:48051947-48051966 | None:intergenic | 25.0% |
| AAAGAGCAAATTGATGTACA+AGG | - | chr2.1:48053007-48053026 | MS.gene85635:intron | 30.0% | |
| AAAGTTGCTGATAAGTTACA+AGG | - | chr2.1:48050625-48050644 | MS.gene85635:intron | 30.0% | |
| AACATTATCGACAGAAGAAT+GGG | - | chr2.1:48052484-48052503 | MS.gene85635:intron | 30.0% | |
| AAGAGCAAATTGATGTACAA+GGG | - | chr2.1:48053008-48053027 | MS.gene85635:intron | 30.0% | |
| AAGTAGGAAAAGAATCCATA+AGG | - | chr2.1:48052420-48052439 | MS.gene85635:CDS | 30.0% | |
| AAGTGTTTCATAAATCCCTT+AGG | + | chr2.1:48053230-48053249 | None:intergenic | 30.0% | |
| AATTAAAGCCACATACGTAA+CGG | + | chr2.1:48052710-48052729 | None:intergenic | 30.0% | |
| ACACAACATAAGTTGTCTAT+AGG | + | chr2.1:48051291-48051310 | None:intergenic | 30.0% | |
| AGAAGATTAGGGTATAAATC+GGG | + | chr2.1:48050479-48050498 | None:intergenic | 30.0% | |
| ATGAAACACTTCATTAACCT+AGG | - | chr2.1:48053239-48053258 | MS.gene85635:intron | 30.0% | |
| ATGACCAATAATTCAATCTC+GGG | + | chr2.1:48051057-48051076 | None:intergenic | 30.0% | |
| ATGATACCGTTAAGAAGATT+AGG | + | chr2.1:48050491-48050510 | None:intergenic | 30.0% | |
| ATGCATAGTTGCTTAATAGT+TGG | - | chr2.1:48052935-48052954 | MS.gene85635:intron | 30.0% | |
| ATTCTAGATATGTTGGAGTA+CGG | - | chr2.1:48052217-48052236 | MS.gene85635:CDS | 30.0% | |
| CAAAAAACTGGGTATTTGTA+TGG | - | chr2.1:48052393-48052412 | MS.gene85635:intron | 30.0% | |
| CAAGGTTAATTGCATTTCTT+TGG | + | chr2.1:48051150-48051169 | None:intergenic | 30.0% | |
| CACTAATATTGTGTTTGTAG+TGG | + | chr2.1:48051427-48051446 | None:intergenic | 30.0% | |
| CATGACCAATAATTCAATCT+CGG | + | chr2.1:48051058-48051077 | None:intergenic | 30.0% | |
| CCTGCCAAAATATCAAAATA+GGG | + | chr2.1:48051616-48051635 | None:intergenic | 30.0% | |
| CTTTATAGAAGATGGGAAAA+AGG | - | chr2.1:48053697-48053716 | MS.gene85635:CDS | 30.0% | |
| GGGTTTACATTTCTCAAAAT+CGG | + | chr2.1:48050438-48050457 | None:intergenic | 30.0% | |
| GTCACTTGAAACTGAAATTA+GGG | - | chr2.1:48052352-48052371 | MS.gene85635:intron | 30.0% | |
| GTCTATAGGTATATGAAGAT+TGG | + | chr2.1:48051277-48051296 | None:intergenic | 30.0% | |
| TATAAAAGTTACAGAACCTG+TGG | + | chr2.1:48053628-48053647 | None:intergenic | 30.0% | |
| TCACTTGAAACTGAAATTAG+GGG | - | chr2.1:48052353-48052372 | MS.gene85635:intron | 30.0% | |
| TCCATTTCATTTCAAAACAC+TGG | + | chr2.1:48051977-48051996 | None:intergenic | 30.0% | |
| TGATACCGTTAAGAAGATTA+GGG | + | chr2.1:48050490-48050509 | None:intergenic | 30.0% | |
| TGATCACATCAATCAAATGA+TGG | + | chr2.1:48051752-48051771 | None:intergenic | 30.0% | |
| TGCATAATATAAAGAGAGCT+AGG | + | chr2.1:48053600-48053619 | None:intergenic | 30.0% | |
| TGCTGCATTATAAAAACCTA+TGG | + | chr2.1:48052748-48052767 | None:intergenic | 30.0% | |
| TGGAATTCATTACAGATACA+TGG | - | chr2.1:48053050-48053069 | MS.gene85635:intron | 30.0% | |
| TTACATTACATACACGTCAT+TGG | - | chr2.1:48052788-48052807 | MS.gene85635:intron | 30.0% | |
| TTGCACAATTCTAGATATGT+TGG | - | chr2.1:48052210-48052229 | MS.gene85635:intron | 30.0% | |
| ! | CAACTTTTCAAATCTACAAG+TGG | - | chr2.1:48051175-48051194 | MS.gene85635:intron | 30.0% |
| ! | CGACACTTTTATTACATTTC+AGG | - | chr2.1:48052820-48052839 | MS.gene85635:intron | 30.0% |
| ! | TGTCACTTGAAACTGAAATT+AGG | - | chr2.1:48052351-48052370 | MS.gene85635:intron | 30.0% |
| ! | TTTTCCAAAAAACTAGGCTA+TGG | - | chr2.1:48052242-48052261 | MS.gene85635:CDS | 30.0% |
| !! | ATTTTGAGAAATGTAAACCC+TGG | - | chr2.1:48050438-48050457 | MS.gene85635:intron | 30.0% |
| !! | TACGCTAGTGTTTTAAACAA+CGG | + | chr2.1:48053429-48053448 | None:intergenic | 30.0% |
| !! | TGAATGTTGATGATGAAGAA+TGG | - | chr2.1:48050733-48050752 | MS.gene85635:intron | 30.0% |
| !!! | ATTACCATAGCCTAGTTTTT+TGG | + | chr2.1:48052249-48052268 | None:intergenic | 30.0% |
| !!! | CCTATTTTGATATTTTGGCA+GGG | - | chr2.1:48051614-48051633 | MS.gene85635:intron | 30.0% |
| !!! | GATACTGGTGGATTTTTATT+TGG | - | chr2.1:48053143-48053162 | MS.gene85635:intron | 30.0% |
| !!! | TACGTATGTGGCTTTAATTT+TGG | - | chr2.1:48052711-48052730 | MS.gene85635:intron | 30.0% |
| !!! | TCCAGTGTTTTGAAATGAAA+TGG | - | chr2.1:48051973-48051992 | MS.gene85635:intron | 30.0% |
| AAAAGAATAACACTCACGTC+AGG | + | chr2.1:48053076-48053095 | None:intergenic | 35.0% | |
| AAACTGGGTATTTGTATGGT+AGG | - | chr2.1:48052397-48052416 | MS.gene85635:intron | 35.0% | |
| AACAGAGAGAAACAACATTC+AGG | + | chr2.1:48051541-48051560 | None:intergenic | 35.0% | |
| AAGCCAATAAACCTTGACAA+CGG | + | chr2.1:48052902-48052921 | None:intergenic | 35.0% | |
| ACATTATCGACAGAAGAATG+GGG | - | chr2.1:48052485-48052504 | MS.gene85635:intron | 35.0% | |
| AGAACCCGAGATTGAATTAT+TGG | - | chr2.1:48051050-48051069 | MS.gene85635:CDS | 35.0% | |
| AGAGCAAATTGATGTACAAG+GGG | - | chr2.1:48053009-48053028 | MS.gene85635:intron | 35.0% | |
| AGGTTTGTACATTACCCAAA+TGG | - | chr2.1:48052566-48052585 | MS.gene85635:intron | 35.0% | |
| AGTGATGCTTCAAAGAAACT+TGG | - | chr2.1:48052853-48052872 | MS.gene85635:intron | 35.0% | |
| CAACATTATCGACAGAAGAA+TGG | - | chr2.1:48052483-48052502 | MS.gene85635:intron | 35.0% | |
| CCCTGCCAAAATATCAAAAT+AGG | + | chr2.1:48051617-48051636 | None:intergenic | 35.0% | |
| GCAAGAGGTTATTATTGAGA+AGG | - | chr2.1:48051798-48051817 | MS.gene85635:intron | 35.0% | |
| GCAATGAAATAGATTCTACG+AGG | - | chr2.1:48052127-48052146 | MS.gene85635:intron | 35.0% | |
| GTATTTGTATGGTAGGAAGT+AGG | - | chr2.1:48052404-48052423 | MS.gene85635:CDS | 35.0% | |
| GTGATGCTTCAAAGAAACTT+GGG | - | chr2.1:48052854-48052873 | MS.gene85635:intron | 35.0% | |
| GTTAAAGCAGTTTGCATACT+TGG | - | chr2.1:48050886-48050905 | MS.gene85635:intron | 35.0% | |
| TATATTATGCATCATGCCAC+AGG | - | chr2.1:48053609-48053628 | MS.gene85635:CDS | 35.0% | |
| TCTATAACTAAGAGGTAGTG+AGG | - | chr2.1:48053499-48053518 | MS.gene85635:intron | 35.0% | |
| TCTTGCGTTAGAAATGCATT+GGG | - | chr2.1:48051378-48051397 | MS.gene85635:intron | 35.0% | |
| TGAGATTAGTGGCTGATATT+TGG | + | chr2.1:48052158-48052177 | None:intergenic | 35.0% | |
| TTCATTTGTGGAAGAGATAC+TGG | - | chr2.1:48053128-48053147 | MS.gene85635:intron | 35.0% | |
| TTCTAGATATGTTGGAGTAC+GGG | - | chr2.1:48052218-48052237 | MS.gene85635:CDS | 35.0% | |
| TTCTTGCGTTAGAAATGCAT+TGG | - | chr2.1:48051377-48051396 | MS.gene85635:intron | 35.0% | |
| TTGAAACTGAAATTAGGGGA+GGG | - | chr2.1:48052357-48052376 | MS.gene85635:intron | 35.0% | |
| ! | AGATGCGATGTTTTCTTTTC+AGG | - | chr2.1:48051771-48051790 | MS.gene85635:intron | 35.0% |
| ! | CAATTTGCTCTTTCTCAGTT+GGG | + | chr2.1:48053000-48053019 | None:intergenic | 35.0% |
| ! | TCAATTTGCTCTTTCTCAGT+TGG | + | chr2.1:48053001-48053020 | None:intergenic | 35.0% |
| ! | TTAAACCTTCAGGTTACCAA+GGG | + | chr2.1:48051125-48051144 | None:intergenic | 35.0% |
| ! | TTTGGAGTACATTTGTCCAT+AGG | - | chr2.1:48052729-48052748 | MS.gene85635:intron | 35.0% |
| !! | TTCTTTGGTCTTAAACCTTC+AGG | + | chr2.1:48051135-48051154 | None:intergenic | 35.0% |
| !!! | CCCTATTTTGATATTTTGGC+AGG | - | chr2.1:48051613-48051632 | MS.gene85635:intron | 35.0% |
| !!! | TTTTTTATTTGGGATGAGGG+AGG | - | chr2.1:48052089-48052108 | MS.gene85635:intron | 35.0% |
| AAATCTATCACCACCGTGAA+AGG | - | chr2.1:48051838-48051857 | MS.gene85635:intron | 40.0% | |
| AGGTGGGAAGGTAAAGAAAA+AGG | - | chr2.1:48051663-48051682 | MS.gene85635:intron | 40.0% | |
| AGGTTGTGTTCTATCTTCCA+TGG | - | chr2.1:48053519-48053538 | MS.gene85635:intron | 40.0% | |
| AGTATAATACACGAACCGGT+TGG | + | chr2.1:48050370-48050389 | None:intergenic | 40.0% | |
| ATTGGATGTGTTTCTTGTGG+TGG | + | chr2.1:48053330-48053349 | None:intergenic | 40.0% | |
| ATTTGTGGAAGAGATACTGG+TGG | - | chr2.1:48053131-48053150 | MS.gene85635:intron | 40.0% | |
| CCTCCTGAATATTGCGAATT+CGG | - | chr2.1:48050407-48050426 | MS.gene85635:intron | 40.0% | |
| CCTTTCAGCACTTATATCCT+AGG | + | chr2.1:48053259-48053278 | None:intergenic | 40.0% | |
| CTACAAGTGGTTGAAATGCA+TGG | - | chr2.1:48051188-48051207 | MS.gene85635:CDS | 40.0% | |
| CTTGAAACTGAAATTAGGGG+AGG | - | chr2.1:48052356-48052375 | MS.gene85635:intron | 40.0% | |
| GAAAAGTTCCAAGCCTTTCA+CGG | + | chr2.1:48051854-48051873 | None:intergenic | 40.0% | |
| GAAATCTATCTTCCTTCTGC+AGG | - | chr2.1:48053655-48053674 | MS.gene85635:CDS | 40.0% | |
| GCTGATAAGTTACAAGGAAC+TGG | - | chr2.1:48050631-48050650 | MS.gene85635:intron | 40.0% | |
| GGATATATCTTATGACGTCG+TGG | - | chr2.1:48053030-48053049 | MS.gene85635:intron | 40.0% | |
| GGTACTTATGGATACGTATC+CGG | + | chr2.1:48052659-48052678 | None:intergenic | 40.0% | |
| GTAGAATAGAATGAAACCGG+AGG | - | chr2.1:48051928-48051947 | MS.gene85635:intron | 40.0% | |
| GTATAATACACGAACCGGTT+GGG | + | chr2.1:48050369-48050388 | None:intergenic | 40.0% | |
| GTTAGAAATGCATTGGGAAG+TGG | - | chr2.1:48051384-48051403 | MS.gene85635:intron | 40.0% | |
| GTTTCATAAATCCCTTAGGC+TGG | + | chr2.1:48053226-48053245 | None:intergenic | 40.0% | |
| GTTTGTAGTGGCGTTTAGTT+AGG | + | chr2.1:48051415-48051434 | None:intergenic | 40.0% | |
| TAAACAACGGTCATTCTCCT+AGG | + | chr2.1:48053416-48053435 | None:intergenic | 40.0% | |
| TATAATACACGAACCGGTTG+GGG | + | chr2.1:48050368-48050387 | None:intergenic | 40.0% | |
| TCTAGATATGTTGGAGTACG+GGG | - | chr2.1:48052219-48052238 | MS.gene85635:CDS | 40.0% | |
| TGAAACTGAAATTAGGGGAG+GGG | - | chr2.1:48052358-48052377 | MS.gene85635:intron | 40.0% | |
| TGGCAGTATAATACACGAAC+CGG | + | chr2.1:48050374-48050393 | None:intergenic | 40.0% | |
| TTCCAGTCAGGATTCAATCT+CGG | + | chr2.1:48051018-48051037 | None:intergenic | 40.0% | |
| TTGGATGTGTTTCTTGTGGT+GGG | + | chr2.1:48053329-48053348 | None:intergenic | 40.0% | |
| TTGTGTAGAGGTGAATGAGA+AGG | - | chr2.1:48050594-48050613 | MS.gene85635:intron | 40.0% | |
| ! | ACGGGGTTTTCCAAAAAACT+AGG | - | chr2.1:48052236-48052255 | MS.gene85635:CDS | 40.0% |
| ! | AGCATTGGATGTGTTTCTTG+TGG | + | chr2.1:48053333-48053352 | None:intergenic | 40.0% |
| ! | CTTAAACCTTCAGGTTACCA+AGG | + | chr2.1:48051126-48051145 | None:intergenic | 40.0% |
| ! | GGTATAAATCGGGTACGTTT+TGG | + | chr2.1:48050469-48050488 | None:intergenic | 40.0% |
| ! | GGTTTGTTCAAAATCTGCCT+AGG | - | chr2.1:48053396-48053415 | MS.gene85635:CDS | 40.0% |
| ! | GTGAAAGGCTTGGAACTTTT+CGG | - | chr2.1:48051853-48051872 | MS.gene85635:intron | 40.0% |
| ! | GTTTTCACGTTTATTGGGCT+GGG | - | chr2.1:48052538-48052557 | MS.gene85635:intron | 40.0% |
| ! | TGTTTTCACGTTTATTGGGC+TGG | - | chr2.1:48052537-48052556 | MS.gene85635:intron | 40.0% |
| ! | TTTTCACGTTTATTGGGCTG+GGG | - | chr2.1:48052539-48052558 | MS.gene85635:intron | 40.0% |
| ! | TTTTTCTTTACCTTCCCACC+TGG | + | chr2.1:48051664-48051683 | None:intergenic | 40.0% |
| !! | CCTAGGATATAAGTGCTGAA+AGG | - | chr2.1:48053256-48053275 | MS.gene85635:intron | 40.0% |
| !! | CTTGGGAAAAAGTTTGCTAC+AGG | - | chr2.1:48052871-48052890 | MS.gene85635:intron | 40.0% |
| !! | GTAATTGTGATGGACAACAC+TGG | + | chr2.1:48053366-48053385 | None:intergenic | 40.0% |
| !! | TTCTTTTCAGGACAAGCAAG+AGG | - | chr2.1:48051783-48051802 | MS.gene85635:intron | 40.0% |
| AAGCTACAAGAGGTAGCTTC+TGG | + | chr2.1:48051352-48051371 | None:intergenic | 45.0% | |
| ATAAGTACCCAATGCGTACC+GGG | - | chr2.1:48052670-48052689 | MS.gene85635:intron | 45.0% | |
| ATTGCTAGGTCTCTTTCCCT+TGG | - | chr2.1:48051106-48051125 | MS.gene85635:intron | 45.0% | |
| CAGGAGGTAAACTGCATACT+TGG | + | chr2.1:48050394-48050413 | None:intergenic | 45.0% | |
| CATAAGTACCCAATGCGTAC+CGG | - | chr2.1:48052669-48052688 | MS.gene85635:intron | 45.0% | |
| CCAATAAACCTTGACAACGG+AGG | + | chr2.1:48052899-48052918 | None:intergenic | 45.0% | |
| CCGAATTCGCAATATTCAGG+AGG | + | chr2.1:48050410-48050429 | None:intergenic | 45.0% | |
| CCTCCGTTGTCAAGGTTTAT+TGG | - | chr2.1:48052896-48052915 | MS.gene85635:intron | 45.0% | |
| CCTGAATATTGCGAATTCGG+CGG | - | chr2.1:48050410-48050429 | MS.gene85635:intron | 45.0% | |
| GAGGTGAATGAGAAGGAAGT+TGG | - | chr2.1:48050601-48050620 | MS.gene85635:intron | 45.0% | |
| TCCAGTCAGGATTCAATCTC+GGG | + | chr2.1:48051017-48051036 | None:intergenic | 45.0% | |
| TGTCTTTGACACCAGCCTAA+GGG | - | chr2.1:48053212-48053231 | MS.gene85635:intron | 45.0% | |
| TTATCGACAGAAGAATGGGG+CGG | - | chr2.1:48052488-48052507 | MS.gene85635:intron | 45.0% | |
| TTGAATCCTGACTGGAACGA+TGG | - | chr2.1:48051021-48051040 | MS.gene85635:CDS | 45.0% | |
| ! | ACTGGTCTACGCATAAGCAT+TGG | + | chr2.1:48053348-48053367 | None:intergenic | 45.0% |
| ! | GGAACATGAGGATGCCATTT+GGG | + | chr2.1:48052583-48052602 | None:intergenic | 45.0% |
| ! | TCTTTCCCTTGGTAACCTGA+AGG | - | chr2.1:48051117-48051136 | MS.gene85635:intron | 45.0% |
| ! | TTTCACGTTTATTGGGCTGG+GGG | - | chr2.1:48052540-48052559 | MS.gene85635:intron | 45.0% |
| ! | TTTTCTTTTGTCCAGACGCG+CGG | - | chr2.1:48051322-48051341 | MS.gene85635:intron | 45.0% |
| !! | GGTACGTTTTGGATCAACCA+GGG | + | chr2.1:48050458-48050477 | None:intergenic | 45.0% |
| !! | AAAAACTAAATATTTAAATA+TGG | + | chr2.1:48052605-48052624 | None:intergenic | 5.0% |
| !! | AAAACTAAATATTTAAATAT+GGG | + | chr2.1:48052604-48052623 | None:intergenic | 5.0% |
| !!! | TGATATTTATTTTTTTATTT+GGG | - | chr2.1:48052079-48052098 | MS.gene85635:intron | 5.0% |
| !!! | TTGATATTTATTTTTTTATT+TGG | - | chr2.1:48052078-48052097 | MS.gene85635:intron | 5.0% |
| AAGTTCCAAGCCTTTCACGG+TGG | + | chr2.1:48051851-48051870 | None:intergenic | 50.0% | |
| ACCCGAGATTGAATCCTGAC+TGG | - | chr2.1:48051013-48051032 | MS.gene85635:CDS | 50.0% | |
| AGAAGCTAGCAGTCTTCAGC+AGG | - | chr2.1:48053561-48053580 | MS.gene85635:intron | 50.0% | |
| AGACCTAGCAATCCGGAGTT+TGG | + | chr2.1:48051098-48051117 | None:intergenic | 50.0% | |
| CAACCAAACTCCGGATTGCT+AGG | - | chr2.1:48051092-48051111 | MS.gene85635:intron | 50.0% | |
| CAATCCGGAGTTTGGTTGGT+CGG | + | chr2.1:48051090-48051109 | None:intergenic | 50.0% | |
| CATACCGACCAACCAAACTC+CGG | - | chr2.1:48051083-48051102 | MS.gene85635:intron | 50.0% | |
| CCGCCGAATTCGCAATATTC+AGG | + | chr2.1:48050413-48050432 | None:intergenic | 50.0% | |
| CGGTACGCATTGGGTACTTA+TGG | + | chr2.1:48052671-48052690 | None:intergenic | 50.0% | |
| CTAGCAATCCGGAGTTTGGT+TGG | + | chr2.1:48051094-48051113 | None:intergenic | 50.0% | |
| CTCAAACCATCGTTCCAGTC+AGG | + | chr2.1:48051030-48051049 | None:intergenic | 50.0% | |
| CTGTCTTTGACACCAGCCTA+AGG | - | chr2.1:48053211-48053230 | MS.gene85635:intron | 50.0% | |
| GGGAAAGAGACCTAGCAATC+CGG | + | chr2.1:48051105-48051124 | None:intergenic | 50.0% | |
| GGGAACATGAGGATGCCATT+TGG | + | chr2.1:48052584-48052603 | None:intergenic | 50.0% | |
| GTAACGCGTTGCTTGCCTAT+TGG | - | chr2.1:48051577-48051596 | MS.gene85635:intron | 50.0% | |
| TAGCAGTCTTCAGCAGGTTG+AGG | - | chr2.1:48053567-48053586 | MS.gene85635:intron | 50.0% | |
| TATCACCACCGTGAAAGGCT+TGG | - | chr2.1:48051843-48051862 | MS.gene85635:intron | 50.0% | |
| ! | GTTGTTTCCCGGTACGCATT+GGG | + | chr2.1:48052680-48052699 | None:intergenic | 50.0% |
| ! | TTTGGGATGAGGGAGGATCA+AGG | - | chr2.1:48052096-48052115 | MS.gene85635:intron | 50.0% |
| !! | AAGCCACATACGTAACGGAC+AGG | + | chr2.1:48052705-48052724 | None:intergenic | 50.0% |
| !! | CTCTTTCTGGAACCTGCAGA+AGG | + | chr2.1:48053670-48053689 | None:intergenic | 50.0% |
| !! | GGGTACGTTTTGGATCAACC+AGG | + | chr2.1:48050459-48050478 | None:intergenic | 50.0% |
| AGGTCAAGCGTCTTCCAGGT+GGG | - | chr2.1:48051647-48051666 | MS.gene85635:intron | 55.0% | |
| CCACCTGTCCGTTACGTATG+TGG | - | chr2.1:48052699-48052718 | MS.gene85635:intron | 55.0% | |
| GAAGAGGTCAAGCGTCTTCC+AGG | - | chr2.1:48051643-48051662 | MS.gene85635:intron | 55.0% | |
| GGAAGACGCTTGACCTCTTC+TGG | + | chr2.1:48051643-48051662 | None:intergenic | 55.0% | |
| TACAGGAGCCTCCGTTGTCA+AGG | - | chr2.1:48052888-48052907 | MS.gene85635:intron | 55.0% | |
| TTTGGCAGGGAAGCCAGAAG+AGG | - | chr2.1:48051627-48051646 | MS.gene85635:intron | 55.0% | |
| ! | ACGGACAGGTGGTTGTTTCC+CGG | + | chr2.1:48052691-48052710 | None:intergenic | 55.0% |
| ! | GGTTGTTTCCCGGTACGCAT+TGG | + | chr2.1:48052681-48052700 | None:intergenic | 55.0% |
| ! | GTTTATTGGGCTGGGGGTAC+AGG | - | chr2.1:48052546-48052565 | MS.gene85635:intron | 55.0% |
| !! | CCACATACGTAACGGACAGG+TGG | + | chr2.1:48052702-48052721 | None:intergenic | 55.0% |
| CAAGCGTCTTCCAGGTGGGA+AGG | - | chr2.1:48051651-48051670 | MS.gene85635:intron | 60.0% | |
| GAGGTCAAGCGTCTTCCAGG+TGG | - | chr2.1:48051646-48051665 | MS.gene85635:intron | 60.0% | |
| ! | GCTGCTTCTAGTGCTGCTGC+TGG | - | chr2.1:48050664-48050683 | MS.gene85635:intron | 60.0% |
| !! | GCTGCTGGTGCTGCTTCATC+AGG | - | chr2.1:48050679-48050698 | MS.gene85635:intron | 60.0% |
| CTTCTGGACTTCCGCGCGTC+TGG | + | chr2.1:48051336-48051355 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 48050353 | 48053733 | 48050353 | ID=MS.gene85635 |
| chr2.1 | mRNA | 48050353 | 48053733 | 48050353 | ID=MS.gene85635.t1;Parent=MS.gene85635 |
| chr2.1 | exon | 48053583 | 48053733 | 48053583 | ID=MS.gene85635.t1.exon1;Parent=MS.gene85635.t1 |
| chr2.1 | CDS | 48053583 | 48053733 | 48053583 | ID=cds.MS.gene85635.t1;Parent=MS.gene85635.t1 |
| chr2.1 | exon | 48053386 | 48053484 | 48053386 | ID=MS.gene85635.t1.exon2;Parent=MS.gene85635.t1 |
| chr2.1 | CDS | 48053386 | 48053484 | 48053386 | ID=cds.MS.gene85635.t1;Parent=MS.gene85635.t1 |
| chr2.1 | exon | 48052402 | 48052451 | 48052402 | ID=MS.gene85635.t1.exon3;Parent=MS.gene85635.t1 |
| chr2.1 | CDS | 48052402 | 48052451 | 48052402 | ID=cds.MS.gene85635.t1;Parent=MS.gene85635.t1 |
| chr2.1 | exon | 48052212 | 48052293 | 48052212 | ID=MS.gene85635.t1.exon4;Parent=MS.gene85635.t1 |
| chr2.1 | CDS | 48052212 | 48052293 | 48052212 | ID=cds.MS.gene85635.t1;Parent=MS.gene85635.t1 |
| chr2.1 | exon | 48051177 | 48051244 | 48051177 | ID=MS.gene85635.t1.exon5;Parent=MS.gene85635.t1 |
| chr2.1 | CDS | 48051177 | 48051244 | 48051177 | ID=cds.MS.gene85635.t1;Parent=MS.gene85635.t1 |
| chr2.1 | exon | 48051008 | 48051091 | 48051008 | ID=MS.gene85635.t1.exon6;Parent=MS.gene85635.t1 |
| chr2.1 | CDS | 48051008 | 48051091 | 48051008 | ID=cds.MS.gene85635.t1;Parent=MS.gene85635.t1 |
| chr2.1 | exon | 48050353 | 48050409 | 48050353 | ID=MS.gene85635.t1.exon7;Parent=MS.gene85635.t1 |
| chr2.1 | CDS | 48050353 | 48050409 | 48050353 | ID=cds.MS.gene85635.t1;Parent=MS.gene85635.t1 |
| Gene Sequence |
| Protein sequence |
