Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032008.t1 | XP_003600853.1 | 99.7 | 387 | 1 | 0 | 1 | 387 | 1 | 387 | 5.80E-218 | 766.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032008.t1 | P46283 | 80.5 | 394 | 69 | 3 | 1 | 387 | 1 | 393 | 4.8e-181 | 635.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032008.t1 | G7JAP0 | 99.7 | 387 | 1 | 0 | 1 | 387 | 1 | 387 | 4.2e-218 | 766.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene032008 | MS.gene06703 | PPI |
| MS.gene013587 | MS.gene032008 | PPI |
| MS.gene032008 | MS.gene06919 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032008.t1 | MTR_3g070100 | 99.742 | 387 | 1 | 0 | 1 | 387 | 1 | 387 | 0.0 | 792 |
| MS.gene032008.t1 | MTR_2g008030 | 31.915 | 282 | 167 | 10 | 116 | 379 | 67 | 341 | 4.45e-23 | 99.4 |
| MS.gene032008.t1 | MTR_0776s0010 | 25.389 | 386 | 238 | 14 | 13 | 364 | 241 | 610 | 2.88e-20 | 93.6 |
| MS.gene032008.t1 | MTR_7g066120 | 28.720 | 289 | 171 | 9 | 115 | 371 | 125 | 410 | 4.88e-20 | 91.3 |
| MS.gene032008.t1 | MTR_6g035305 | 28.253 | 269 | 165 | 8 | 116 | 364 | 67 | 327 | 2.02e-18 | 85.9 |
| MS.gene032008.t1 | MTR_4g093620 | 26.761 | 284 | 167 | 14 | 120 | 378 | 124 | 391 | 1.56e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032008.t1 | AT3G55800 | 79.949 | 394 | 71 | 3 | 1 | 387 | 1 | 393 | 0.0 | 647 |
| MS.gene032008.t1 | AT1G43670 | 31.061 | 264 | 164 | 5 | 116 | 364 | 67 | 327 | 1.50e-22 | 97.8 |
| MS.gene032008.t1 | AT5G64380 | 25.786 | 318 | 183 | 14 | 86 | 368 | 90 | 389 | 1.37e-14 | 75.1 |
Find 99 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGTCTAGCACAGATTTA+TGG | 0.166276 | 3.1:-57449810 | None:intergenic |
| TTGAAATCAAGCTCTTTATT+TGG | 0.186892 | 3.1:+57447446 | MS.gene032008:CDS |
| ACACAATGTGTTAACTCTTT+TGG | 0.201562 | 3.1:+57447839 | MS.gene032008:CDS |
| TCACTCCCTCTTCTGCCTTC+AGG | 0.230507 | 3.1:+57447251 | MS.gene032008:CDS |
| GTCATAACCAAATGCGAAAT+TGG | 0.262915 | 3.1:+57447530 | MS.gene032008:CDS |
| CAATTGATATTTCAGGAAAA+TGG | 0.276601 | 3.1:+57449243 | MS.gene032008:intron |
| CACTTATGTACTTGCACTTA+AGG | 0.290701 | 3.1:+57449032 | MS.gene032008:CDS |
| GATAGAACTCAAGTTGCTTA+TGG | 0.316106 | 3.1:+57449850 | MS.gene032008:CDS |
| GTCAAAGAGACTCATGAAAT+TGG | 0.322823 | 3.1:+57449272 | MS.gene032008:CDS |
| CACTCCCTCTTCTGCCTTCA+GGG | 0.336824 | 3.1:+57447252 | MS.gene032008:CDS |
| TTCACAGTAGGCACCATCTT+TGG | 0.339734 | 3.1:+57448928 | MS.gene032008:CDS |
| GTTGCATTTGACCCTCTTGA+TGG | 0.343626 | 3.1:+57448883 | MS.gene032008:CDS |
| GATCAAAGAATGAGGTCATT+AGG | 0.344384 | 3.1:+57449872 | MS.gene032008:CDS |
| AACGTGGCTCTCAAATTTCC+AGG | 0.345781 | 3.1:-57449314 | None:intergenic |
| ACTGTCGCCAATTTCGCATT+TGG | 0.348976 | 3.1:-57447537 | None:intergenic |
| TTGTTTGAGGTAGCTCCATT+AGG | 0.352175 | 3.1:+57449748 | MS.gene032008:CDS |
| AGAGGGAGTGATGGAGGGTA+GGG | 0.378558 | 3.1:-57447239 | None:intergenic |
| CTCAACTTGGCTTTGGCAGT+TGG | 0.380041 | 3.1:-57449721 | None:intergenic |
| AAGAGGGAGTGATGGAGGGT+AGG | 0.386970 | 3.1:-57447240 | None:intergenic |
| CAGATTATTGTAAAAGAAAA+GGG | 0.391090 | 3.1:+57449676 | MS.gene032008:intron |
| CCTCCCATGTCTTGAAGCTC+AGG | 0.399582 | 3.1:-57448733 | None:intergenic |
| GCAGATTATTGTAAAAGAAA+AGG | 0.403257 | 3.1:+57449675 | MS.gene032008:intron |
| GATAAGTTGATTGGAGTAAC+AGG | 0.403692 | 3.1:+57448964 | MS.gene032008:CDS |
| GATGGAGGGTAGGGAGTGTT+TGG | 0.409911 | 3.1:-57447230 | None:intergenic |
| GGCAGAAGAGGGAGTGATGG+AGG | 0.413966 | 3.1:-57447245 | None:intergenic |
| GCAAGTACATAAGTGGTTCT+AGG | 0.415518 | 3.1:-57449024 | None:intergenic |
| AATTATGACATACCATCAAC+TGG | 0.427130 | 3.1:-57448757 | None:intergenic |
| ATGCGAAATTGGCGACAGTT+TGG | 0.435500 | 3.1:+57447541 | MS.gene032008:CDS |
| CAACAGTCTCAACTTGGCTT+TGG | 0.442108 | 3.1:-57449728 | None:intergenic |
| TAAGGGACTGATTAGGTTGA+TGG | 0.455534 | 3.1:+57447754 | MS.gene032008:CDS |
| AGATCAAGTTGCTGCAGCTA+TGG | 0.458553 | 3.1:+57448990 | MS.gene032008:CDS |
| AGGTTTGAAGAAACATTGTA+TGG | 0.459432 | 3.1:+57449892 | MS.gene032008:CDS |
| GTCAAAGGCGACACCGGATA+AGG | 0.461477 | 3.1:+57447736 | MS.gene032008:CDS |
| GACATGGGAGGTCCAGTTGA+TGG | 0.468525 | 3.1:+57448745 | MS.gene032008:CDS |
| TCAAAGGCGACACCGGATAA+GGG | 0.472586 | 3.1:+57447737 | MS.gene032008:CDS |
| AACCTAATCAGTCCCTTATC+CGG | 0.476945 | 3.1:-57447749 | None:intergenic |
| GCAGAAGTGAGAGTGTTTCA+AGG | 0.477074 | 3.1:-57448686 | None:intergenic |
| GAATTTCTACTTCTTGATGA+AGG | 0.478553 | 3.1:+57449072 | MS.gene032008:CDS |
| GAAGGCAGAAGAGGGAGTGA+TGG | 0.480102 | 3.1:-57447248 | None:intergenic |
| GCTTAAGCACTTGCTCCAAC+AGG | 0.481475 | 3.1:-57449940 | None:intergenic |
| GGACTCTTGATTGAAAATGC+TGG | 0.481565 | 3.1:+57449769 | MS.gene032008:CDS |
| AGTAGAAATTCATGAGTGCC+GGG | 0.495020 | 3.1:-57449060 | None:intergenic |
| AAGTAGAAATTCATGAGTGC+CGG | 0.495327 | 3.1:-57449061 | None:intergenic |
| CTCAAACAACAGTCTCAACT+TGG | 0.497480 | 3.1:-57449734 | None:intergenic |
| AACATCCGGCACCATTCCTC+CGG | 0.502390 | 3.1:-57449492 | None:intergenic |
| TAGGCACCATCTTTGGTGTA+TGG | 0.505757 | 3.1:+57448935 | MS.gene032008:CDS |
| CTTAAGTGCAAGTACATAAG+TGG | 0.510456 | 3.1:-57449031 | None:intergenic |
| GATCAAGTTGCTGCAGCTAT+GGG | 0.517665 | 3.1:+57448991 | MS.gene032008:CDS |
| ACCATCTTTGGTGTATGGCC+TGG | 0.525808 | 3.1:+57448940 | MS.gene032008:CDS |
| CACCGGATAAGGGACTGATT+AGG | 0.526285 | 3.1:+57447747 | MS.gene032008:CDS |
| CAAGTTGAGACTGTTGTTTG+AGG | 0.526367 | 3.1:+57449735 | MS.gene032008:CDS |
| TGGCCTGGTGATAAGTTGAT+TGG | 0.529285 | 3.1:+57448955 | MS.gene032008:CDS |
| ACCAGGCCATACACCAAAGA+TGG | 0.537327 | 3.1:-57448941 | None:intergenic |
| GCAGAAGAGGGAGTGATGGA+GGG | 0.545840 | 3.1:-57447244 | None:intergenic |
| GTAGGAAGAATTCTTGTCAA+AGG | 0.549312 | 3.1:+57447721 | MS.gene032008:intron |
| GATTAGGTTGATGGTGTGCA+TGG | 0.550231 | 3.1:+57447763 | MS.gene032008:CDS |
| CTCAAGGGTGGTGTACCTGT+TGG | 0.557393 | 3.1:+57449925 | MS.gene032008:CDS |
| CTTGCACTTAAGGACTTCCC+CGG | 0.558366 | 3.1:+57449042 | MS.gene032008:CDS |
| AAAAGAACCTGGTTAACATC+CGG | 0.559892 | 3.1:-57449506 | None:intergenic |
| GAAGGAAAACTATTCTCCCC+TGG | 0.564395 | 3.1:+57449296 | MS.gene032008:CDS |
| GCAACTTGCAGTGGATATGC+TGG | 0.564658 | 3.1:+57447868 | MS.gene032008:CDS |
| AATGGTGCCGGATGTTAACC+AGG | 0.565507 | 3.1:+57449499 | MS.gene032008:CDS |
| AAACATTGTATGGTTCATCA+AGG | 0.565959 | 3.1:+57449902 | MS.gene032008:CDS |
| GTATGGTTCATCAAGGCTCA+AGG | 0.566669 | 3.1:+57449909 | MS.gene032008:CDS |
| AATCCCTGAGCTTCAAGACA+TGG | 0.568565 | 3.1:+57448729 | MS.gene032008:CDS |
| GCTGGAGGTTACAGCAGTGA+TGG | 0.571612 | 3.1:+57449787 | MS.gene032008:CDS |
| ATTGAGATACACCGGAGGAA+TGG | 0.572312 | 3.1:+57449481 | MS.gene032008:CDS |
| CCATAAATCTGTGCTAGACA+AGG | 0.577457 | 3.1:+57449810 | MS.gene032008:CDS |
| TGACAATGCAGATTATGCTA+AGG | 0.577947 | 3.1:+57449337 | MS.gene032008:CDS |
| ACATGCTATACTAGTTTCCA+TGG | 0.581877 | 3.1:-57447173 | None:intergenic |
| TATTATTGTGCATACCCTGA+AGG | 0.582360 | 3.1:-57447266 | None:intergenic |
| GTAGACACAAATTTCACAGT+AGG | 0.585426 | 3.1:+57448916 | MS.gene032008:CDS |
| TGGGGATGAGCAACTTGCAG+TGG | 0.586212 | 3.1:+57447859 | MS.gene032008:CDS |
| ATCCCTGAGCTTCAAGACAT+GGG | 0.586854 | 3.1:+57448730 | MS.gene032008:CDS |
| ATTCTTGTCAAAGGCGACAC+CGG | 0.589868 | 3.1:+57447730 | MS.gene032008:CDS |
| ACTACGAAGAAAAGCACCAC+TGG | 0.593568 | 3.1:-57447200 | None:intergenic |
| CTCCCATGTCTTGAAGCTCA+GGG | 0.593677 | 3.1:-57448732 | None:intergenic |
| GTGAAGACAGCTTCTTGTGG+TGG | 0.596604 | 3.1:+57447815 | MS.gene032008:CDS |
| CATACCCTGAAGGCAGAAGA+GGG | 0.598076 | 3.1:-57447256 | None:intergenic |
| GAGACTCATGAAATTGGTGA+AGG | 0.599892 | 3.1:+57449278 | MS.gene032008:CDS |
| TATGGTTCATCAAGGCTCAA+GGG | 0.610673 | 3.1:+57449910 | MS.gene032008:CDS |
| CTCTTGATTGAAAATGCTGG+AGG | 0.611258 | 3.1:+57449772 | MS.gene032008:CDS |
| ACGTGGCTCTCAAATTTCCA+GGG | 0.611538 | 3.1:-57449313 | None:intergenic |
| GCATACCCTGAAGGCAGAAG+AGG | 0.613244 | 3.1:-57447257 | None:intergenic |
| ATACACCGGAGGAATGGTGC+CGG | 0.622946 | 3.1:+57449487 | MS.gene032008:CDS |
| TGCTTATGGATCAAAGAATG+AGG | 0.624161 | 3.1:+57449864 | MS.gene032008:CDS |
| AAATACACATTGAGATACAC+CGG | 0.625848 | 3.1:+57449473 | MS.gene032008:CDS |
| ACTCCAATCAACTTATCACC+AGG | 0.643314 | 3.1:-57448958 | None:intergenic |
| AGTATAGCATGTTACTCCAG+TGG | 0.647366 | 3.1:+57447184 | MS.gene032008:CDS |
| ACTATGCTTGAACCATCAAG+AGG | 0.650576 | 3.1:-57448895 | None:intergenic |
| ATTAGGTTGATGGTGTGCAT+GGG | 0.661036 | 3.1:+57447764 | MS.gene032008:CDS |
| AAAGTGAAGACAGCTTCTTG+TGG | 0.674964 | 3.1:+57447812 | MS.gene032008:CDS |
| ATAATCTGCATTGTCAAACG+TGG | 0.681581 | 3.1:-57449330 | None:intergenic |
| CTATGCTTGAACCATCAAGA+GGG | 0.684004 | 3.1:-57448894 | None:intergenic |
| GGTTCATCAAGGCTCAAGGG+TGG | 0.686247 | 3.1:+57449913 | MS.gene032008:CDS |
| GTAGAAATTCATGAGTGCCG+GGG | 0.695072 | 3.1:-57449059 | None:intergenic |
| CGTGGCTCTCAAATTTCCAG+GGG | 0.699176 | 3.1:-57449312 | None:intergenic |
| CCTGAGCTTCAAGACATGGG+AGG | 0.706034 | 3.1:+57448733 | MS.gene032008:CDS |
| TACACATTGAGATACACCGG+AGG | 0.744654 | 3.1:+57449476 | MS.gene032008:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACAATTAAAATTTATGAA+AGG | + | chr3.1:57448286-57448305 | MS.gene032008:intron | 10.0% |
| !! | ATGAAATAAAGAAAAAAAAA+AGG | - | chr3.1:57448382-57448401 | None:intergenic | 10.0% |
| !! | TATTTCAATGATTAATTTAT+TGG | + | chr3.1:57447306-57447325 | MS.gene032008:intron | 10.0% |
| !! | AGAGAAAATAAAATTTAACA+AGG | - | chr3.1:57448245-57448264 | None:intergenic | 15.0% |
| !! | GACCAAAAAAAAAAAAAAAA+TGG | + | chr3.1:57448609-57448628 | MS.gene032008:intron | 15.0% |
| !!! | ACACAATTTAATTTTAATTG+TGG | - | chr3.1:57448527-57448546 | None:intergenic | 15.0% |
| !!! | ATATATAATTTTTGAGTGTA+TGG | + | chr3.1:57448822-57448841 | MS.gene032008:intron | 15.0% |
| !!! | TGCCATTTTTTTTTTTTTTT+TGG | - | chr3.1:57448614-57448633 | None:intergenic | 15.0% |
| !!! | TTTCTTTATTTCATAATAGT+AGG | + | chr3.1:57448388-57448407 | MS.gene032008:intron | 15.0% |
| !! | AATAAAATTTAACAAGGAAG+TGG | - | chr3.1:57448239-57448258 | None:intergenic | 20.0% |
| !! | AATTATCCAATTGATATTTC+AGG | + | chr3.1:57449236-57449255 | MS.gene032008:intron | 20.0% |
| !! | AGATTTATGAGATTCTAATA+AGG | + | chr3.1:57449111-57449130 | MS.gene032008:intron | 20.0% |
| !! | CAGATTATTGTAAAAGAAAA+GGG | + | chr3.1:57449676-57449695 | MS.gene032008:intron | 20.0% |
| !!! | AGTGAAGTAATTTTATATCA+AGG | - | chr3.1:57449565-57449584 | None:intergenic | 20.0% |
| !!! | CAATATTTTTAGTGATAGTT+TGG | - | chr3.1:57448786-57448805 | None:intergenic | 20.0% |
| !!! | TGTTTCTATAAATGAACTTT+AGG | - | chr3.1:57448271-57448290 | None:intergenic | 20.0% |
| ! | ACTAATCTATGTGCATAAAT+TGG | - | chr3.1:57447953-57447972 | None:intergenic | 25.0% |
| ! | AGCTCATGAAAATAATAAGA+TGG | - | chr3.1:57448423-57448442 | None:intergenic | 25.0% |
| ! | ATAGACCAAAAAAATGTTTG+AGG | + | chr3.1:57449189-57449208 | MS.gene032008:intron | 25.0% |
| ! | CAATTGATATTTCAGGAAAA+TGG | + | chr3.1:57449243-57449262 | MS.gene032008:intron | 25.0% |
| ! | GCAGATTATTGTAAAAGAAA+AGG | + | chr3.1:57449675-57449694 | MS.gene032008:intron | 25.0% |
| ! | TGTTGATGTTTGTATATTGT+AGG | + | chr3.1:57447703-57447722 | MS.gene032008:intron | 25.0% |
| ! | TTGAAATCAAGCTCTTTATT+TGG | + | chr3.1:57447446-57447465 | MS.gene032008:CDS | 25.0% |
| !! | AAACTGTTTTCATAAGCTAA+TGG | - | chr3.1:57447676-57447695 | None:intergenic | 25.0% |
| !! | AATCAACACTTAAGTTTTCA+AGG | + | chr3.1:57447492-57447511 | MS.gene032008:CDS | 25.0% |
| !! | ATATTGCATTTTATATGCAG+GGG | + | chr3.1:57448460-57448479 | MS.gene032008:intron | 25.0% |
| !! | ATCAACACTTAAGTTTTCAA+GGG | + | chr3.1:57447493-57447512 | MS.gene032008:CDS | 25.0% |
| !! | CATTTTCCTGAAATATCAAT+TGG | - | chr3.1:57449245-57449264 | None:intergenic | 25.0% |
| !! | GATATTGCATTTTATATGCA+GGG | + | chr3.1:57448459-57448478 | MS.gene032008:intron | 25.0% |
| !!! | AAACATGTTTTGTTATGATG+AGG | + | chr3.1:57448309-57448328 | MS.gene032008:intron | 25.0% |
| !!! | GATTTCCTCAAACATTTTTT+TGG | - | chr3.1:57449197-57449216 | None:intergenic | 25.0% |
| !!! | TAATTTTAATTGTGGAGAAG+TGG | - | chr3.1:57448519-57448538 | None:intergenic | 25.0% |
| AAACATTGTATGGTTCATCA+AGG | + | chr3.1:57449902-57449921 | MS.gene032008:CDS | 30.0% | |
| AAAGCCACATATTCATGTTA+TGG | - | chr3.1:57448002-57448021 | None:intergenic | 30.0% | |
| AAATACACATTGAGATACAC+CGG | + | chr3.1:57449473-57449492 | MS.gene032008:CDS | 30.0% | |
| AATTATGACATACCATCAAC+TGG | - | chr3.1:57448760-57448779 | None:intergenic | 30.0% | |
| ACAATTTAATTGTGGAGAAG+TGG | - | chr3.1:57448564-57448583 | None:intergenic | 30.0% | |
| AGGTTTGAAGAAACATTGTA+TGG | + | chr3.1:57449892-57449911 | MS.gene032008:CDS | 30.0% | |
| GAATTTCTACTTCTTGATGA+AGG | + | chr3.1:57449072-57449091 | MS.gene032008:CDS | 30.0% | |
| TCATAATATACGCATCTAAC+AGG | + | chr3.1:57448850-57448869 | MS.gene032008:intron | 30.0% | |
| TTCTTGTAGGAATCTCATAT+TGG | - | chr3.1:57448081-57448100 | None:intergenic | 30.0% | |
| ! | ACAATGTGTTAACTCTTTTG+GGG | + | chr3.1:57447841-57447860 | MS.gene032008:CDS | 30.0% |
| ! | ACACAATGTGTTAACTCTTT+TGG | + | chr3.1:57447839-57447858 | MS.gene032008:CDS | 30.0% |
| ! | CACAATGTGTTAACTCTTTT+GGG | + | chr3.1:57447840-57447859 | MS.gene032008:CDS | 30.0% |
| ! | GGATATTGCATTTTATATGC+AGG | + | chr3.1:57448458-57448477 | MS.gene032008:intron | 30.0% |
| ! | TTTTCAATCAAGAGTCCTAA+TGG | - | chr3.1:57449766-57449785 | None:intergenic | 30.0% |
| !! | TTATGCACATAGATTAGTCT+TGG | + | chr3.1:57447955-57447974 | MS.gene032008:intron | 30.0% |
| AAAAGAACCTGGTTAACATC+CGG | - | chr3.1:57449509-57449528 | None:intergenic | 35.0% | |
| AAGTAGAAATTCATGAGTGC+CGG | - | chr3.1:57449064-57449083 | None:intergenic | 35.0% | |
| AATGTGTTGAGAAAAGAACC+TGG | - | chr3.1:57449520-57449539 | None:intergenic | 35.0% | |
| ACATAGTAATCGACCAACTA+AGG | - | chr3.1:57449446-57449465 | None:intergenic | 35.0% | |
| ATAATCTGCATTGTCAAACG+TGG | - | chr3.1:57449333-57449352 | None:intergenic | 35.0% | |
| ATGTTATGGATCCAATGTCT+AGG | - | chr3.1:57447988-57448007 | None:intergenic | 35.0% | |
| CACTTATGTACTTGCACTTA+AGG | + | chr3.1:57449032-57449051 | MS.gene032008:CDS | 35.0% | |
| CATAGTAATCGACCAACTAA+GGG | - | chr3.1:57449445-57449464 | None:intergenic | 35.0% | |
| CTTAAGTGCAAGTACATAAG+TGG | - | chr3.1:57449034-57449053 | None:intergenic | 35.0% | |
| GAGCTCACACAATTTAATTG+TGG | - | chr3.1:57448572-57448591 | None:intergenic | 35.0% | |
| GATCAAAGAATGAGGTCATT+AGG | + | chr3.1:57449872-57449891 | MS.gene032008:CDS | 35.0% | |
| GGATCCATAACATGAATATG+TGG | + | chr3.1:57447995-57448014 | MS.gene032008:intron | 35.0% | |
| GTAGACACAAATTTCACAGT+AGG | + | chr3.1:57448916-57448935 | MS.gene032008:CDS | 35.0% | |
| GTAGGAAGAATTCTTGTCAA+AGG | + | chr3.1:57447721-57447740 | MS.gene032008:intron | 35.0% | |
| GTCAAAGAGACTCATGAAAT+TGG | + | chr3.1:57449272-57449291 | MS.gene032008:CDS | 35.0% | |
| GTCATAACCAAATGCGAAAT+TGG | + | chr3.1:57447530-57447549 | MS.gene032008:CDS | 35.0% | |
| TAATATACGCATCTAACAGG+AGG | + | chr3.1:57448853-57448872 | MS.gene032008:intron | 35.0% | |
| TATTATTGTGCATACCCTGA+AGG | - | chr3.1:57447269-57447288 | None:intergenic | 35.0% | |
| TGACAATGCAGATTATGCTA+AGG | + | chr3.1:57449337-57449356 | MS.gene032008:CDS | 35.0% | |
| TGCTTATGGATCAAAGAATG+AGG | + | chr3.1:57449864-57449883 | MS.gene032008:CDS | 35.0% | |
| ! | GATAGAACTCAAGTTGCTTA+TGG | + | chr3.1:57449850-57449869 | MS.gene032008:CDS | 35.0% |
| ! | GGCTAACAATCTTCTTTTTG+AGG | + | chr3.1:57447889-57447908 | MS.gene032008:CDS | 35.0% |
| ! | TGAATATGTGGCTTTTATGC+AGG | + | chr3.1:57448007-57448026 | MS.gene032008:intron | 35.0% |
| !! | GATAAGTTGATTGGAGTAAC+AGG | + | chr3.1:57448964-57448983 | MS.gene032008:CDS | 35.0% |
| !! | TTCGTTTTTCATCCCTTAGT+TGG | + | chr3.1:57449430-57449449 | MS.gene032008:intron | 35.0% |
| AAAGTGAAGACAGCTTCTTG+TGG | + | chr3.1:57447812-57447831 | MS.gene032008:CDS | 40.0% | |
| AACCTAATCAGTCCCTTATC+CGG | - | chr3.1:57447752-57447771 | None:intergenic | 40.0% | |
| AAGGCCTGTGCATAGAAATT+TGG | - | chr3.1:57448670-57448689 | None:intergenic | 40.0% | |
| ACTATGCTTGAACCATCAAG+AGG | - | chr3.1:57448898-57448917 | None:intergenic | 40.0% | |
| ACTCCAATCAACTTATCACC+AGG | - | chr3.1:57448961-57448980 | None:intergenic | 40.0% | |
| AGGTGTGGAAAAGTTCTTGT+AGG | - | chr3.1:57448094-57448113 | None:intergenic | 40.0% | |
| AGTAGAAATTCATGAGTGCC+GGG | - | chr3.1:57449063-57449082 | None:intergenic | 40.0% | |
| AGTATAGCATGTTACTCCAG+TGG | + | chr3.1:57447184-57447203 | MS.gene032008:CDS | 40.0% | |
| CCATAAATCTGTGCTAGACA+AGG | + | chr3.1:57449810-57449829 | MS.gene032008:CDS | 40.0% | |
| CCTTGTCTAGCACAGATTTA+TGG | - | chr3.1:57449813-57449832 | None:intergenic | 40.0% | |
| CTATGCTTGAACCATCAAGA+GGG | - | chr3.1:57448897-57448916 | None:intergenic | 40.0% | |
| CTCAAACAACAGTCTCAACT+TGG | - | chr3.1:57449737-57449756 | None:intergenic | 40.0% | |
| CTCTTGATTGAAAATGCTGG+AGG | + | chr3.1:57449772-57449791 | MS.gene032008:CDS | 40.0% | |
| CTTCGGGATAACACACTTAA+AGG | + | chr3.1:57448122-57448141 | MS.gene032008:intron | 40.0% | |
| GAGACTCATGAAATTGGTGA+AGG | + | chr3.1:57449278-57449297 | MS.gene032008:CDS | 40.0% | |
| GCAAGTACATAAGTGGTTCT+AGG | - | chr3.1:57449027-57449046 | None:intergenic | 40.0% | |
| GGACTCTTGATTGAAAATGC+TGG | + | chr3.1:57449769-57449788 | MS.gene032008:CDS | 40.0% | |
| GTCACCAAATTTCTATGCAC+AGG | + | chr3.1:57448663-57448682 | MS.gene032008:intron | 40.0% | |
| TATGGTTCATCAAGGCTCAA+GGG | + | chr3.1:57449910-57449929 | MS.gene032008:CDS | 40.0% | |
| TGGATCCAATGTCTAGGAAT+TGG | - | chr3.1:57447982-57448001 | None:intergenic | 40.0% | |
| TGGTGAGTTACTTACATGTG+TGG | + | chr3.1:57447561-57447580 | MS.gene032008:intron | 40.0% | |
| TTAATTGTGGAGAAGTGGAG+TGG | - | chr3.1:57448514-57448533 | None:intergenic | 40.0% | |
| TTGGTCCAATTCCTAGACAT+TGG | + | chr3.1:57447974-57447993 | MS.gene032008:intron | 40.0% | |
| TTTCATGAGCTTAGCTCAGT+TGG | + | chr3.1:57448432-57448451 | MS.gene032008:intron | 40.0% | |
| ! | CAAGTTGAGACTGTTGTTTG+AGG | + | chr3.1:57449735-57449754 | MS.gene032008:CDS | 40.0% |
| ! | TTGTTTGAGGTAGCTCCATT+AGG | + | chr3.1:57449748-57449767 | MS.gene032008:CDS | 40.0% |
| !! | ATTAGGTTGATGGTGTGCAT+GGG | + | chr3.1:57447764-57447783 | MS.gene032008:CDS | 40.0% |
| !! | TAAGGGACTGATTAGGTTGA+TGG | + | chr3.1:57447754-57447773 | MS.gene032008:CDS | 40.0% |
| !! | TTTTTGGTCAAGTAGCCTAG+TGG | - | chr3.1:57448598-57448617 | None:intergenic | 40.0% |
| AACGTGGCTCTCAAATTTCC+AGG | - | chr3.1:57449317-57449336 | None:intergenic | 45.0% | |
| AATCCCTGAGCTTCAAGACA+TGG | + | chr3.1:57448729-57448748 | MS.gene032008:CDS | 45.0% | |
| ACGTGGCTCTCAAATTTCCA+GGG | - | chr3.1:57449316-57449335 | None:intergenic | 45.0% | |
| ACTGTCGCCAATTTCGCATT+TGG | - | chr3.1:57447540-57447559 | None:intergenic | 45.0% | |
| ATCCCTGAGCTTCAAGACAT+GGG | + | chr3.1:57448730-57448749 | MS.gene032008:CDS | 45.0% | |
| ATGAGCTTAGCTCAGTTGGT+AGG | + | chr3.1:57448436-57448455 | MS.gene032008:intron | 45.0% | |
| ATGCGAAATTGGCGACAGTT+TGG | + | chr3.1:57447541-57447560 | MS.gene032008:CDS | 45.0% | |
| ATTCTTGTCAAAGGCGACAC+CGG | + | chr3.1:57447730-57447749 | MS.gene032008:CDS | 45.0% | |
| ATTGAGATACACCGGAGGAA+TGG | + | chr3.1:57449481-57449500 | MS.gene032008:CDS | 45.0% | |
| CAACAGTCTCAACTTGGCTT+TGG | - | chr3.1:57449731-57449750 | None:intergenic | 45.0% | |
| GAAGGAAAACTATTCTCCCC+TGG | + | chr3.1:57449296-57449315 | MS.gene032008:CDS | 45.0% | |
| GTATGGTTCATCAAGGCTCA+AGG | + | chr3.1:57449909-57449928 | MS.gene032008:CDS | 45.0% | |
| GTTGCATTTGACCCTCTTGA+TGG | + | chr3.1:57448883-57448902 | MS.gene032008:CDS | 45.0% | |
| TACACATTGAGATACACCGG+AGG | + | chr3.1:57449476-57449495 | MS.gene032008:CDS | 45.0% | |
| TTCACAGTAGGCACCATCTT+TGG | + | chr3.1:57448928-57448947 | MS.gene032008:CDS | 45.0% | |
| ! | AGATCAAGTTGCTGCAGCTA+TGG | + | chr3.1:57448990-57449009 | MS.gene032008:CDS | 45.0% |
| ! | GATCAAGTTGCTGCAGCTAT+GGG | + | chr3.1:57448991-57449010 | MS.gene032008:CDS | 45.0% |
| ! | GTAGAAATTCATGAGTGCCG+GGG | - | chr3.1:57449062-57449081 | None:intergenic | 45.0% |
| ! | GTTATCCCGAAGTCGATTCT+AGG | - | chr3.1:57448114-57448133 | None:intergenic | 45.0% |
| ! | TAGGCACCATCTTTGGTGTA+TGG | + | chr3.1:57448935-57448954 | MS.gene032008:CDS | 45.0% |
| ! | TCCACACCTAGAATCGACTT+CGG | + | chr3.1:57448105-57448124 | MS.gene032008:intron | 45.0% |
| ! | TGAGCTTAGCTCAGTTGGTA+GGG | + | chr3.1:57448437-57448456 | MS.gene032008:intron | 45.0% |
| ! | TGCATTTTATATGCAGGGGC+CGG | + | chr3.1:57448464-57448483 | MS.gene032008:intron | 45.0% |
| !! | ACTACGAAGAAAAGCACCAC+TGG | - | chr3.1:57447203-57447222 | None:intergenic | 45.0% |
| !! | GATTAGGTTGATGGTGTGCA+TGG | + | chr3.1:57447763-57447782 | MS.gene032008:CDS | 45.0% |
| !! | GCAGAAGTGAGAGTGTTTCA+AGG | - | chr3.1:57448689-57448708 | None:intergenic | 45.0% |
| !! | TGGCCTGGTGATAAGTTGAT+TGG | + | chr3.1:57448955-57448974 | MS.gene032008:CDS | 45.0% |
| ACCAGGCCATACACCAAAGA+TGG | - | chr3.1:57448944-57448963 | None:intergenic | 50.0% | |
| CACCGGATAAGGGACTGATT+AGG | + | chr3.1:57447747-57447766 | MS.gene032008:CDS | 50.0% | |
| CATACCCTGAAGGCAGAAGA+GGG | - | chr3.1:57447259-57447278 | None:intergenic | 50.0% | |
| CGTGGCTCTCAAATTTCCAG+GGG | - | chr3.1:57449315-57449334 | None:intergenic | 50.0% | |
| CTCCCATGTCTTGAAGCTCA+GGG | - | chr3.1:57448735-57448754 | None:intergenic | 50.0% | |
| CTTGCACTTAAGGACTTCCC+CGG | + | chr3.1:57449042-57449061 | MS.gene032008:CDS | 50.0% | |
| GCAACTTGCAGTGGATATGC+TGG | + | chr3.1:57447868-57447887 | MS.gene032008:CDS | 50.0% | |
| GTGAAGACAGCTTCTTGTGG+TGG | + | chr3.1:57447815-57447834 | MS.gene032008:CDS | 50.0% | |
| TCAAAGGCGACACCGGATAA+GGG | + | chr3.1:57447737-57447756 | MS.gene032008:CDS | 50.0% | |
| TGTGGAGAAGTGGAGAGAAG+TGG | - | chr3.1:57448509-57448528 | None:intergenic | 50.0% | |
| ! | AATGGTGCCGGATGTTAACC+AGG | + | chr3.1:57449499-57449518 | MS.gene032008:CDS | 50.0% |
| ! | ACCATCTTTGGTGTATGGCC+TGG | + | chr3.1:57448940-57448959 | MS.gene032008:CDS | 50.0% |
| ! | CATTTTATATGCAGGGGCCG+GGG | + | chr3.1:57448466-57448485 | MS.gene032008:intron | 50.0% |
| ! | CCACACCTAGAATCGACTTC+GGG | + | chr3.1:57448106-57448125 | MS.gene032008:intron | 50.0% |
| ! | GCATTTTATATGCAGGGGCC+GGG | + | chr3.1:57448465-57448484 | MS.gene032008:intron | 50.0% |
| ! | GCTGCAGCTATGGGAGTTTT+AGG | + | chr3.1:57449000-57449019 | MS.gene032008:CDS | 50.0% |
| ! | TTGTGTGAGCTCTAGCCACT+AGG | + | chr3.1:57448541-57448560 | MS.gene032008:intron | 50.0% |
| !! | CTCAACTTGGCTTTGGCAGT+TGG | - | chr3.1:57449724-57449743 | None:intergenic | 50.0% |
| AACATCCGGCACCATTCCTC+CGG | - | chr3.1:57449495-57449514 | None:intergenic | 55.0% | |
| ATACACCGGAGGAATGGTGC+CGG | + | chr3.1:57449487-57449506 | MS.gene032008:CDS | 55.0% | |
| CACTCCCTCTTCTGCCTTCA+GGG | + | chr3.1:57447252-57447271 | MS.gene032008:CDS | 55.0% | |
| CCTCCCATGTCTTGAAGCTC+AGG | - | chr3.1:57448736-57448755 | None:intergenic | 55.0% | |
| CCTGAGCTTCAAGACATGGG+AGG | + | chr3.1:57448733-57448752 | MS.gene032008:CDS | 55.0% | |
| CTCAAGGGTGGTGTACCTGT+TGG | + | chr3.1:57449925-57449944 | MS.gene032008:CDS | 55.0% | |
| GAAGGCAGAAGAGGGAGTGA+TGG | - | chr3.1:57447251-57447270 | None:intergenic | 55.0% | |
| GACATGGGAGGTCCAGTTGA+TGG | + | chr3.1:57448745-57448764 | MS.gene032008:CDS | 55.0% | |
| GCATACCCTGAAGGCAGAAG+AGG | - | chr3.1:57447260-57447279 | None:intergenic | 55.0% | |
| GCTGGAGGTTACAGCAGTGA+TGG | + | chr3.1:57449787-57449806 | MS.gene032008:CDS | 55.0% | |
| GGTTCATCAAGGCTCAAGGG+TGG | + | chr3.1:57449913-57449932 | MS.gene032008:CDS | 55.0% | |
| GTCAAAGGCGACACCGGATA+AGG | + | chr3.1:57447736-57447755 | MS.gene032008:CDS | 55.0% | |
| TCACTCCCTCTTCTGCCTTC+AGG | + | chr3.1:57447251-57447270 | MS.gene032008:CDS | 55.0% | |
| TGGGGATGAGCAACTTGCAG+TGG | + | chr3.1:57447859-57447878 | MS.gene032008:CDS | 55.0% | |
| ! | AAGAGGGAGTGATGGAGGGT+AGG | - | chr3.1:57447243-57447262 | None:intergenic | 55.0% |
| ! | AGAGGGAGTGATGGAGGGTA+GGG | - | chr3.1:57447242-57447261 | None:intergenic | 55.0% |
| ! | CCCGAAGTCGATTCTAGGTG+TGG | - | chr3.1:57448109-57448128 | None:intergenic | 55.0% |
| ! | GCAGAAGAGGGAGTGATGGA+GGG | - | chr3.1:57447247-57447266 | None:intergenic | 55.0% |
| ! | GTGGAGAGAAGTGGAGTGTC+CGG | - | chr3.1:57448500-57448519 | None:intergenic | 55.0% |
| ! | TGGAGAGAAGTGGAGTGTCC+GGG | - | chr3.1:57448499-57448518 | None:intergenic | 55.0% |
| !! | GATGGAGGGTAGGGAGTGTT+TGG | - | chr3.1:57447233-57447252 | None:intergenic | 55.0% |
| GGCAGAAGAGGGAGTGATGG+AGG | - | chr3.1:57447248-57447267 | None:intergenic | 60.0% | |
| ! | GGAGAGAAGTGGAGTGTCCG+GGG | - | chr3.1:57448498-57448517 | None:intergenic | 60.0% |
| AGTGTCCGGGGTTCGAACCC+CGG | - | chr3.1:57448486-57448505 | None:intergenic | 65.0% | |
| AGGGGCCGGGGTTCGAACCC+CGG | + | chr3.1:57448478-57448497 | MS.gene032008:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 57447175 | 57449960 | 57447175 | ID=MS.gene032008 |
| chr3.1 | mRNA | 57447175 | 57449960 | 57447175 | ID=MS.gene032008.t1;Parent=MS.gene032008 |
| chr3.1 | exon | 57447175 | 57447273 | 57447175 | ID=MS.gene032008.t1.exon1;Parent=MS.gene032008.t1 |
| chr3.1 | CDS | 57447175 | 57447273 | 57447175 | ID=cds.MS.gene032008.t1;Parent=MS.gene032008.t1 |
| chr3.1 | exon | 57447443 | 57447562 | 57447443 | ID=MS.gene032008.t1.exon2;Parent=MS.gene032008.t1 |
| chr3.1 | CDS | 57447443 | 57447562 | 57447443 | ID=cds.MS.gene032008.t1;Parent=MS.gene032008.t1 |
| chr3.1 | exon | 57447725 | 57447910 | 57447725 | ID=MS.gene032008.t1.exon3;Parent=MS.gene032008.t1 |
| chr3.1 | CDS | 57447725 | 57447910 | 57447725 | ID=cds.MS.gene032008.t1;Parent=MS.gene032008.t1 |
| chr3.1 | exon | 57448685 | 57448766 | 57448685 | ID=MS.gene032008.t1.exon4;Parent=MS.gene032008.t1 |
| chr3.1 | CDS | 57448685 | 57448766 | 57448685 | ID=cds.MS.gene032008.t1;Parent=MS.gene032008.t1 |
| chr3.1 | exon | 57448872 | 57449093 | 57448872 | ID=MS.gene032008.t1.exon5;Parent=MS.gene032008.t1 |
| chr3.1 | CDS | 57448872 | 57449093 | 57448872 | ID=cds.MS.gene032008.t1;Parent=MS.gene032008.t1 |
| chr3.1 | exon | 57449258 | 57449358 | 57449258 | ID=MS.gene032008.t1.exon6;Parent=MS.gene032008.t1 |
| chr3.1 | CDS | 57449258 | 57449358 | 57449258 | ID=cds.MS.gene032008.t1;Parent=MS.gene032008.t1 |
| chr3.1 | exon | 57449449 | 57449520 | 57449449 | ID=MS.gene032008.t1.exon7;Parent=MS.gene032008.t1 |
| chr3.1 | CDS | 57449449 | 57449520 | 57449449 | ID=cds.MS.gene032008.t1;Parent=MS.gene032008.t1 |
| chr3.1 | exon | 57449679 | 57449960 | 57449679 | ID=MS.gene032008.t1.exon8;Parent=MS.gene032008.t1 |
| chr3.1 | CDS | 57449679 | 57449960 | 57449679 | ID=cds.MS.gene032008.t1;Parent=MS.gene032008.t1 |
| Gene Sequence |
| Protein sequence |
