AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene69259


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene69259.t1 MTR_3g070100 99.742 387 1 0 1 387 1 387 0.0 792
MS.gene69259.t1 MTR_2g008030 31.915 282 167 10 116 379 67 341 4.45e-23 99.4
MS.gene69259.t1 MTR_0776s0010 25.389 386 238 14 13 364 241 610 2.88e-20 93.6
MS.gene69259.t1 MTR_7g066120 28.720 289 171 9 115 371 125 410 4.88e-20 91.3
MS.gene69259.t1 MTR_6g035305 28.253 269 165 8 116 364 67 327 2.02e-18 85.9
MS.gene69259.t1 MTR_4g093620 26.761 284 167 14 120 378 124 391 1.56e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene69259.t1 AT3G55800 79.949 394 71 3 1 387 1 393 0.0 647
MS.gene69259.t1 AT1G43670 31.061 264 164 5 116 364 67 327 1.50e-22 97.8
MS.gene69259.t1 AT5G64380 25.786 318 183 14 86 368 90 389 1.37e-14 75.1

Find 97 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTGTCTAGCACAGATTTA+TGG 0.166276 3.2:-63850886 None:intergenic
TTGAAATCAAGCTCTTTATT+TGG 0.186892 3.2:+63848392 MS.gene69259:CDS
ACACAATGTGTTAACTCTTT+TGG 0.201562 3.2:+63848785 MS.gene69259:CDS
TCACTCCCTCTTCTGCCTTC+AGG 0.230507 3.2:+63848197 MS.gene69259:CDS
CAATTGATCTTTCAGGAAAA+TGG 0.254298 3.2:+63850316 MS.gene69259:intron
GTCATAACCAAATGCGAAAT+TGG 0.262915 3.2:+63848476 MS.gene69259:CDS
CACTTATGTACTTGCACTTA+AGG 0.290701 3.2:+63849995 MS.gene69259:CDS
GATAGAACTCAAGTTGCTTA+TGG 0.316106 3.2:+63850926 MS.gene69259:CDS
CACTCCCTCTTCTGCCTTCA+GGG 0.336824 3.2:+63848198 MS.gene69259:CDS
TTCACAGTAGGCACCATCTT+TGG 0.339734 3.2:+63849891 MS.gene69259:CDS
GTTGCATTTGACCCTCTTGA+TGG 0.343626 3.2:+63849846 MS.gene69259:CDS
GATCAAAGAATGAGGTCATT+AGG 0.344384 3.2:+63850948 MS.gene69259:CDS
ACTGTCGCCAATTTCGCATT+TGG 0.348976 3.2:-63848483 None:intergenic
TTGTTTGAGGTAGCTCCATT+AGG 0.352175 3.2:+63850824 MS.gene69259:CDS
AATGTGGCTCTCAAATTTCC+TGG 0.374598 3.2:-63850387 None:intergenic
AGAGGGAGTGATGGAGGGTA+GGG 0.378558 3.2:-63848185 None:intergenic
CTCAACTTGGCTTTGGCAGT+TGG 0.380041 3.2:-63850797 None:intergenic
AATGTAGACCTTAGCATAAT+CGG 0.386240 3.2:-63850418 None:intergenic
AAGAGGGAGTGATGGAGGGT+AGG 0.386970 3.2:-63848186 None:intergenic
CAGATTATTGTAAAAGAAAA+GGG 0.391090 3.2:+63850752 MS.gene69259:intron
GCAGATTATTGTAAAAGAAA+AGG 0.393674 3.2:+63850751 MS.gene69259:intron
CCTCCCATGTCTTGAAGCTC+AGG 0.399582 3.2:-63849696 None:intergenic
GATAAGTTGATTGGAGTAAC+AGG 0.403692 3.2:+63849927 MS.gene69259:CDS
GATGGAGGGTAGGGAGTGTT+TGG 0.409911 3.2:-63848176 None:intergenic
GGCAGAAGAGGGAGTGATGG+AGG 0.413966 3.2:-63848191 None:intergenic
GCAAGTACATAAGTGGTTCT+AGG 0.415518 3.2:-63849987 None:intergenic
AATTATGACATACCATCAAC+TGG 0.427130 3.2:-63849720 None:intergenic
ATGCGAAATTGGCGACAGTT+TGG 0.435500 3.2:+63848487 MS.gene69259:CDS
CAACAGTCTCAACTTGGCTT+TGG 0.442108 3.2:-63850804 None:intergenic
TAAGGGACTGATTAGGTTGA+TGG 0.455534 3.2:+63848700 MS.gene69259:CDS
AGATCAAGTTGCTGCAGCTA+TGG 0.458553 3.2:+63849953 MS.gene69259:CDS
AGGTTTGAAGAAACATTGTA+TGG 0.459432 3.2:+63850968 MS.gene69259:CDS
GTCAAAGGCGACACCGGATA+AGG 0.461477 3.2:+63848682 MS.gene69259:CDS
GACATGGGAGGTCCAGTTGA+TGG 0.468525 3.2:+63849708 MS.gene69259:CDS
TCAAAGGCGACACCGGATAA+GGG 0.472586 3.2:+63848683 MS.gene69259:CDS
GTCAAAGAGACTCATGAAAT+CGG 0.475716 3.2:+63850345 MS.gene69259:CDS
AACCTAATCAGTCCCTTATC+CGG 0.476945 3.2:-63848695 None:intergenic
GCAGAAGTGAGAGTGTTTCA+AGG 0.477074 3.2:-63849649 None:intergenic
GAATTTCTACTTCTTGATGA+AGG 0.478553 3.2:+63850035 MS.gene69259:CDS
GAAGGCAGAAGAGGGAGTGA+TGG 0.480102 3.2:-63848194 None:intergenic
GCTTAAGCACTTGCTCCAAC+AGG 0.481475 3.2:-63851016 None:intergenic
AGTAGAAATTCATGAGTGCC+GGG 0.495020 3.2:-63850023 None:intergenic
AAGTAGAAATTCATGAGTGC+CGG 0.495327 3.2:-63850024 None:intergenic
CTCAAACAACAGTCTCAACT+TGG 0.497480 3.2:-63850810 None:intergenic
TAGGCACCATCTTTGGTGTA+TGG 0.505757 3.2:+63849898 MS.gene69259:CDS
CTTAAGTGCAAGTACATAAG+TGG 0.510456 3.2:-63849994 None:intergenic
AAAAGAACCTGGTTAACATC+TGG 0.513565 3.2:-63850582 None:intergenic
GATCAAGTTGCTGCAGCTAT+GGG 0.517665 3.2:+63849954 MS.gene69259:CDS
GAAGGAAAACTATTCTCTCC+AGG 0.520688 3.2:+63850369 MS.gene69259:CDS
ACCATCTTTGGTGTATGGCC+TGG 0.525808 3.2:+63849903 MS.gene69259:CDS
CACCGGATAAGGGACTGATT+AGG 0.526285 3.2:+63848693 MS.gene69259:CDS
CAAGTTGAGACTGTTGTTTG+AGG 0.526367 3.2:+63850811 MS.gene69259:CDS
TGGCCTGGTGATAAGTTGAT+TGG 0.529285 3.2:+63849918 MS.gene69259:CDS
ACCAGGCCATACACCAAAGA+TGG 0.537327 3.2:-63849904 None:intergenic
GCAGAAGAGGGAGTGATGGA+GGG 0.545840 3.2:-63848190 None:intergenic
GTAGGAAGAATTCTTGTCAA+AGG 0.549312 3.2:+63848667 MS.gene69259:intron
AAATACACCTTGAGATACAC+TGG 0.549631 3.2:+63850549 MS.gene69259:CDS
GATTAGGTTGATGGTGTGCA+TGG 0.550231 3.2:+63848709 MS.gene69259:CDS
GGACTCTTGATTGAAAATGC+TGG 0.554169 3.2:+63850845 MS.gene69259:CDS
CTCAAGGGTGGTGTACCTGT+TGG 0.557393 3.2:+63851001 MS.gene69259:CDS
CTTGCACTTAAGGACTTCCC+CGG 0.558366 3.2:+63850005 MS.gene69259:CDS
CTTGAGATACACTGGAGGAA+TGG 0.561369 3.2:+63850557 MS.gene69259:CDS
GCAACTTGCAGTGGATATGC+TGG 0.564658 3.2:+63848814 MS.gene69259:CDS
AAACATTGTATGGTTCATCA+AGG 0.565959 3.2:+63850978 MS.gene69259:CDS
GTATGGTTCATCAAGGCTCA+AGG 0.566669 3.2:+63850985 MS.gene69259:CDS
AATCCCTGAGCTTCAAGACA+TGG 0.568565 3.2:+63849692 MS.gene69259:CDS
CCATAAATCTGTGCTAGACA+AGG 0.577457 3.2:+63850886 MS.gene69259:CDS
ACATGCTATACTAGTTTCCA+TGG 0.581877 3.2:-63848119 None:intergenic
TATTATTGTGCATACCCTGA+AGG 0.582360 3.2:-63848212 None:intergenic
TGACAACGCCGATTATGCTA+AGG 0.583304 3.2:+63850410 MS.gene69259:CDS
GTAGACACAAATTTCACAGT+AGG 0.585426 3.2:+63849879 MS.gene69259:CDS
TGGGGATGAGCAACTTGCAG+TGG 0.586212 3.2:+63848805 MS.gene69259:CDS
ATCCCTGAGCTTCAAGACAT+GGG 0.586854 3.2:+63849693 MS.gene69259:CDS
ATTCTTGTCAAAGGCGACAC+CGG 0.589868 3.2:+63848676 MS.gene69259:CDS
ACTACGAAGAAAAGCACCAC+TGG 0.593568 3.2:-63848146 None:intergenic
CTCCCATGTCTTGAAGCTCA+GGG 0.593677 3.2:-63849695 None:intergenic
GTGAAGACAGCTTCTTGTGG+TGG 0.596604 3.2:+63848761 MS.gene69259:CDS
CATACCCTGAAGGCAGAAGA+GGG 0.598076 3.2:-63848202 None:intergenic
TATGGTTCATCAAGGCTCAA+GGG 0.610673 3.2:+63850986 MS.gene69259:CDS
GCATACCCTGAAGGCAGAAG+AGG 0.613244 3.2:-63848203 None:intergenic
CATTCCTCCAGTGTATCTCA+AGG 0.618798 3.2:-63850556 None:intergenic
ATAATCGGCGTTGTCAAATG+TGG 0.622416 3.2:-63850403 None:intergenic
GAGACTCATGAAATCGGTGA+AGG 0.622663 3.2:+63850351 MS.gene69259:CDS
TGCTTATGGATCAAAGAATG+AGG 0.624161 3.2:+63850940 MS.gene69259:CDS
AATGGTGCCAGATGTTAACC+AGG 0.627894 3.2:+63850575 MS.gene69259:CDS
GCTGGTGGTTACAGCAGTGA+TGG 0.631075 3.2:+63850863 MS.gene69259:CDS
ACTCCAATCAACTTATCACC+AGG 0.643314 3.2:-63849921 None:intergenic
AGTATAGCATGTTACTCCAG+TGG 0.647366 3.2:+63848130 MS.gene69259:CDS
CTCTTGATTGAAAATGCTGG+TGG 0.648913 3.2:+63850848 MS.gene69259:CDS
ACTATGCTTGAACCATCAAG+AGG 0.650576 3.2:-63849858 None:intergenic
ATTAGGTTGATGGTGTGCAT+GGG 0.661036 3.2:+63848710 MS.gene69259:CDS
AAAGTGAAGACAGCTTCTTG+TGG 0.674964 3.2:+63848758 MS.gene69259:CDS
CTATGCTTGAACCATCAAGA+GGG 0.684004 3.2:-63849857 None:intergenic
GGTTCATCAAGGCTCAAGGG+TGG 0.686247 3.2:+63850989 MS.gene69259:CDS
GTAGAAATTCATGAGTGCCG+GGG 0.695072 3.2:-63850022 None:intergenic
CCTGAGCTTCAAGACATGGG+AGG 0.706034 3.2:+63849696 MS.gene69259:CDS
TACACCTTGAGATACACTGG+AGG 0.730718 3.2:+63850552 MS.gene69259:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACAATTAAAATTTATGAA+AGG + chr3.2:63849226-63849245 MS.gene69259:intron 10.0%
!! ATGAAATAAAGAAAAAAAAA+AGG - chr3.2:63849322-63849341 None:intergenic 10.0%
!! TATTTCAATGATTAATTTAT+TGG + chr3.2:63848252-63848271 MS.gene69259:intron 10.0%
!!! GATGAATATTTTATAAAATA+TGG + chr3.2:63850710-63850729 MS.gene69259:intron 10.0%
!! AGAGAAAATAAAATTTAACA+AGG - chr3.2:63849185-63849204 None:intergenic 15.0%
!! AGATTTATGAGATTATAATA+AGG + chr3.2:63850074-63850093 MS.gene69259:intron 15.0%
!! GACCAAAAAAAAATAAAAAA+TGG + chr3.2:63849504-63849523 MS.gene69259:intron 15.0%
!!! ATATATAATTTTTGAGTGTA+TGG + chr3.2:63849785-63849804 MS.gene69259:intron 15.0%
!!! TGCCATTTTTTATTTTTTTT+TGG - chr3.2:63849509-63849528 None:intergenic 15.0%
!!! TTTCTTTATTTCATAATAGT+AGG + chr3.2:63849328-63849347 MS.gene69259:intron 15.0%
!! AATAAAATTTAACAAGGAAG+TGG - chr3.2:63849179-63849198 None:intergenic 20.0%
!! CAGATTATTGTAAAAGAAAA+GGG + chr3.2:63850752-63850771 MS.gene69259:intron 20.0%
!!! CAATATTTTTAGTGATAGTT+TGG - chr3.2:63849749-63849768 None:intergenic 20.0%
! AATTATCCAATTGATCTTTC+AGG + chr3.2:63850309-63850328 MS.gene69259:intron 25.0%
! ACTAATCTATGTGCATAAAT+TGG - chr3.2:63848899-63848918 None:intergenic 25.0%
! GCAGATTATTGTAAAAGAAA+AGG + chr3.2:63850751-63850770 MS.gene69259:intron 25.0%
! TGTTGATGTTTGTATATTGT+AGG + chr3.2:63848649-63848668 MS.gene69259:intron 25.0%
! TTGAAATCAAGCTCTTTATT+TGG + chr3.2:63848392-63848411 MS.gene69259:CDS 25.0%
! TTGTCATATATGATAAAGCT+TGG - chr3.2:63850289-63850308 None:intergenic 25.0%
!! AAACTGTTTTCATAAGCTAA+TGG - chr3.2:63848622-63848641 None:intergenic 25.0%
!! AATCAACACTTAAGTTTTCA+AGG + chr3.2:63848438-63848457 MS.gene69259:CDS 25.0%
!! AGTGAAGTAATTTTGTATGA+AGG - chr3.2:63850641-63850660 None:intergenic 25.0%
!! ATATTGCATTTTATATGCAG+GGG + chr3.2:63849400-63849419 MS.gene69259:intron 25.0%
!! ATCAACACTTAAGTTTTCAA+GGG + chr3.2:63848439-63848458 MS.gene69259:CDS 25.0%
!! GATATTGCATTTTATATGCA+GGG + chr3.2:63849399-63849418 MS.gene69259:intron 25.0%
!!! AAACATGTTTTGTTATGATG+AGG + chr3.2:63849249-63849268 MS.gene69259:intron 25.0%
AAACATTGTATGGTTCATCA+AGG + chr3.2:63850978-63850997 MS.gene69259:CDS 30.0%
AAAGCCACATATTCATGTTA+TGG - chr3.2:63848948-63848967 None:intergenic 30.0%
AACTCATGGAGATAATAAGA+TGG - chr3.2:63849363-63849382 None:intergenic 30.0%
AATGTAGACCTTAGCATAAT+CGG - chr3.2:63850421-63850440 None:intergenic 30.0%
AATTATGACATACCATCAAC+TGG - chr3.2:63849723-63849742 None:intergenic 30.0%
ACAATTTAATTGTGGAGAAG+TGG - chr3.2:63849459-63849478 None:intergenic 30.0%
AGGTTTGAAGAAACATTGTA+TGG + chr3.2:63850968-63850987 MS.gene69259:CDS 30.0%
CAATTGATCTTTCAGGAAAA+TGG + chr3.2:63850316-63850335 MS.gene69259:intron 30.0%
CTAGACCAAAAAAATGTTTG+AGG + chr3.2:63850150-63850169 MS.gene69259:intron 30.0%
GAATTTCTACTTCTTGATGA+AGG + chr3.2:63850035-63850054 MS.gene69259:CDS 30.0%
TCATAATATACGCATCTAAC+AGG + chr3.2:63849813-63849832 MS.gene69259:intron 30.0%
! ACAATGTGTTAACTCTTTTG+GGG + chr3.2:63848787-63848806 MS.gene69259:CDS 30.0%
! ACACAATGTGTTAACTCTTT+TGG + chr3.2:63848785-63848804 MS.gene69259:CDS 30.0%
! CACAATGTGTTAACTCTTTT+GGG + chr3.2:63848786-63848805 MS.gene69259:CDS 30.0%
! CATTTTCCTGAAAGATCAAT+TGG - chr3.2:63850318-63850337 None:intergenic 30.0%
! GGATATTGCATTTTATATGC+AGG + chr3.2:63849398-63849417 MS.gene69259:intron 30.0%
! TTTTCAATCAAGAGTCCTAA+TGG - chr3.2:63850842-63850861 None:intergenic 30.0%
!! AATAAAGTGAGAGTGTTTCA+AGG - chr3.2:63849584-63849603 None:intergenic 30.0%
!! TTATGCACATAGATTAGTCT+TGG + chr3.2:63848901-63848920 MS.gene69259:intron 30.0%
!! TTCGTTTTTCATCGATTAGT+TGG + chr3.2:63850506-63850525 MS.gene69259:intron 30.0%
!!! GCTTTCCTCAAACATTTTTT+TGG - chr3.2:63850191-63850210 None:intergenic 30.0%
!!! TTGCGACTCAAACATTTTTT+TGG - chr3.2:63850158-63850177 None:intergenic 30.0%
AAAAGAACCTGGTTAACATC+TGG - chr3.2:63850585-63850604 None:intergenic 35.0%
AAATACACCTTGAGATACAC+TGG + chr3.2:63850549-63850568 MS.gene69259:CDS 35.0%
AAGTAGAAATTCATGAGTGC+CGG - chr3.2:63850027-63850046 None:intergenic 35.0%
AATGTGTTGAGAAAAGAACC+TGG - chr3.2:63850596-63850615 None:intergenic 35.0%
AGTTCTTGTAGGAATCTCAT+TGG - chr3.2:63849023-63849042 None:intergenic 35.0%
ATGTTATGGATCCAATGTCT+AGG - chr3.2:63848934-63848953 None:intergenic 35.0%
CACTTATGTACTTGCACTTA+AGG + chr3.2:63849995-63850014 MS.gene69259:CDS 35.0%
CTTAAGTGCAAGTACATAAG+TGG - chr3.2:63849997-63850016 None:intergenic 35.0%
GAGCTCACACAATTTAATTG+TGG - chr3.2:63849467-63849486 None:intergenic 35.0%
GATCAAAGAATGAGGTCATT+AGG + chr3.2:63850948-63850967 MS.gene69259:CDS 35.0%
GGATCCATAACATGAATATG+TGG + chr3.2:63848941-63848960 MS.gene69259:intron 35.0%
GTAGACACAAATTTCACAGT+AGG + chr3.2:63849879-63849898 MS.gene69259:CDS 35.0%
GTAGGAAGAATTCTTGTCAA+AGG + chr3.2:63848667-63848686 MS.gene69259:intron 35.0%
GTCAAAGAGACTCATGAAAT+CGG + chr3.2:63850345-63850364 MS.gene69259:CDS 35.0%
GTCATAACCAAATGCGAAAT+TGG + chr3.2:63848476-63848495 MS.gene69259:CDS 35.0%
TAATATACGCATCTAACAGG+AGG + chr3.2:63849816-63849835 MS.gene69259:intron 35.0%
TATTATTGTGCATACCCTGA+AGG - chr3.2:63848215-63848234 None:intergenic 35.0%
TGCTTATGGATCAAAGAATG+AGG + chr3.2:63850940-63850959 MS.gene69259:CDS 35.0%
! GATAGAACTCAAGTTGCTTA+TGG + chr3.2:63850926-63850945 MS.gene69259:CDS 35.0%
! GGCTAACAATCTTCTTTTTG+AGG + chr3.2:63848835-63848854 MS.gene69259:CDS 35.0%
! TGAATATGTGGCTTTTATGC+AGG + chr3.2:63848953-63848972 MS.gene69259:intron 35.0%
!! GATAAGTTGATTGGAGTAAC+AGG + chr3.2:63849927-63849946 MS.gene69259:CDS 35.0%
AAAGTGAAGACAGCTTCTTG+TGG + chr3.2:63848758-63848777 MS.gene69259:CDS 40.0%
AACCTAATCAGTCCCTTATC+CGG - chr3.2:63848698-63848717 None:intergenic 40.0%
AAGGCCTGTGCATAGAAATT+TGG - chr3.2:63849565-63849584 None:intergenic 40.0%
AATGTGGCTCTCAAATTTCC+TGG - chr3.2:63850390-63850409 None:intergenic 40.0%
ACTATGCTTGAACCATCAAG+AGG - chr3.2:63849861-63849880 None:intergenic 40.0%
ACTCCAATCAACTTATCACC+AGG - chr3.2:63849924-63849943 None:intergenic 40.0%
AGGTGTGGAAAAGTTCTTGT+AGG - chr3.2:63849034-63849053 None:intergenic 40.0%
AGTAGAAATTCATGAGTGCC+GGG - chr3.2:63850026-63850045 None:intergenic 40.0%
AGTATAGCATGTTACTCCAG+TGG + chr3.2:63848130-63848149 MS.gene69259:CDS 40.0%
ATAATCGGCGTTGTCAAATG+TGG - chr3.2:63850406-63850425 None:intergenic 40.0%
CCATAAATCTGTGCTAGACA+AGG + chr3.2:63850886-63850905 MS.gene69259:CDS 40.0%
CCTTGTCTAGCACAGATTTA+TGG - chr3.2:63850889-63850908 None:intergenic 40.0%
CTATGCTTGAACCATCAAGA+GGG - chr3.2:63849860-63849879 None:intergenic 40.0%
CTCAAACAACAGTCTCAACT+TGG - chr3.2:63850813-63850832 None:intergenic 40.0%
CTCTTGATTGAAAATGCTGG+TGG + chr3.2:63850848-63850867 MS.gene69259:CDS 40.0%
CTTCGGGATAACACACTTAA+AGG + chr3.2:63849062-63849081 MS.gene69259:intron 40.0%
GAAGGAAAACTATTCTCTCC+AGG + chr3.2:63850369-63850388 MS.gene69259:CDS 40.0%
GCAAGTACATAAGTGGTTCT+AGG - chr3.2:63849990-63850009 None:intergenic 40.0%
GGACTCTTGATTGAAAATGC+TGG + chr3.2:63850845-63850864 MS.gene69259:CDS 40.0%
GTCACCAAATTTCTATGCAC+AGG + chr3.2:63849558-63849577 MS.gene69259:intron 40.0%
TACCAACTGAGCTAAACTCA+TGG - chr3.2:63849377-63849396 None:intergenic 40.0%
TATGGTTCATCAAGGCTCAA+GGG + chr3.2:63850986-63851005 MS.gene69259:CDS 40.0%
TGGATCCAATGTCTAGGAAT+TGG - chr3.2:63848928-63848947 None:intergenic 40.0%
TGGTGAGTTACTTACATGTG+TGG + chr3.2:63848507-63848526 MS.gene69259:intron 40.0%
TTGGTCCAATTCCTAGACAT+TGG + chr3.2:63848920-63848939 MS.gene69259:intron 40.0%
! ATGAGTTTAGCTCAGTTGGT+AGG + chr3.2:63849376-63849395 MS.gene69259:intron 40.0%
! CAAGTTGAGACTGTTGTTTG+AGG + chr3.2:63850811-63850830 MS.gene69259:CDS 40.0%
! TGAGTTTAGCTCAGTTGGTA+GGG + chr3.2:63849377-63849396 MS.gene69259:intron 40.0%
! TTGTTTGAGGTAGCTCCATT+AGG + chr3.2:63850824-63850843 MS.gene69259:CDS 40.0%
!! ATTAGGTTGATGGTGTGCAT+GGG + chr3.2:63848710-63848729 MS.gene69259:CDS 40.0%
!! TAAGGGACTGATTAGGTTGA+TGG + chr3.2:63848700-63848719 MS.gene69259:CDS 40.0%
!! TTTTTGGTCAAGTAGCCTAG+TGG - chr3.2:63849493-63849512 None:intergenic 40.0%
AATCCCTGAGCTTCAAGACA+TGG + chr3.2:63849692-63849711 MS.gene69259:CDS 45.0%
ACTGTCGCCAATTTCGCATT+TGG - chr3.2:63848486-63848505 None:intergenic 45.0%
ATCCCTGAGCTTCAAGACAT+GGG + chr3.2:63849693-63849712 MS.gene69259:CDS 45.0%
ATGCGAAATTGGCGACAGTT+TGG + chr3.2:63848487-63848506 MS.gene69259:CDS 45.0%
ATTCTTGTCAAAGGCGACAC+CGG + chr3.2:63848676-63848695 MS.gene69259:CDS 45.0%
CAACAGTCTCAACTTGGCTT+TGG - chr3.2:63850807-63850826 None:intergenic 45.0%
CATTCCTCCAGTGTATCTCA+AGG - chr3.2:63850559-63850578 None:intergenic 45.0%
CTTGAGATACACTGGAGGAA+TGG + chr3.2:63850557-63850576 MS.gene69259:CDS 45.0%
GAGACTCATGAAATCGGTGA+AGG + chr3.2:63850351-63850370 MS.gene69259:CDS 45.0%
GTATGGTTCATCAAGGCTCA+AGG + chr3.2:63850985-63851004 MS.gene69259:CDS 45.0%
GTTGCATTTGACCCTCTTGA+TGG + chr3.2:63849846-63849865 MS.gene69259:CDS 45.0%
TACACCTTGAGATACACTGG+AGG + chr3.2:63850552-63850571 MS.gene69259:CDS 45.0%
TTCACAGTAGGCACCATCTT+TGG + chr3.2:63849891-63849910 MS.gene69259:CDS 45.0%
! AATGGTGCCAGATGTTAACC+AGG + chr3.2:63850575-63850594 MS.gene69259:CDS 45.0%
! AGATCAAGTTGCTGCAGCTA+TGG + chr3.2:63849953-63849972 MS.gene69259:CDS 45.0%
! CTCCATGAGTTTAGCTCAGT+TGG + chr3.2:63849372-63849391 MS.gene69259:intron 45.0%
! GATCAAGTTGCTGCAGCTAT+GGG + chr3.2:63849954-63849973 MS.gene69259:CDS 45.0%
! GTAGAAATTCATGAGTGCCG+GGG - chr3.2:63850025-63850044 None:intergenic 45.0%
! GTTATCCCGAAGTCGATTCT+AGG - chr3.2:63849054-63849073 None:intergenic 45.0%
! TAGGCACCATCTTTGGTGTA+TGG + chr3.2:63849898-63849917 MS.gene69259:CDS 45.0%
! TCCACACCTAGAATCGACTT+CGG + chr3.2:63849045-63849064 MS.gene69259:intron 45.0%
! TGACAACGCCGATTATGCTA+AGG + chr3.2:63850410-63850429 MS.gene69259:CDS 45.0%
! TGCATTTTATATGCAGGGGC+CGG + chr3.2:63849404-63849423 MS.gene69259:intron 45.0%
!! ACTACGAAGAAAAGCACCAC+TGG - chr3.2:63848149-63848168 None:intergenic 45.0%
!! GATTAGGTTGATGGTGTGCA+TGG + chr3.2:63848709-63848728 MS.gene69259:CDS 45.0%
!! GCAGAAGTGAGAGTGTTTCA+AGG - chr3.2:63849652-63849671 None:intergenic 45.0%
!! TGGCCTGGTGATAAGTTGAT+TGG + chr3.2:63849918-63849937 MS.gene69259:CDS 45.0%
ACCAGGCCATACACCAAAGA+TGG - chr3.2:63849907-63849926 None:intergenic 50.0%
CACCGGATAAGGGACTGATT+AGG + chr3.2:63848693-63848712 MS.gene69259:CDS 50.0%
CATACCCTGAAGGCAGAAGA+GGG - chr3.2:63848205-63848224 None:intergenic 50.0%
CTCCCATGTCTTGAAGCTCA+GGG - chr3.2:63849698-63849717 None:intergenic 50.0%
CTTGCACTTAAGGACTTCCC+CGG + chr3.2:63850005-63850024 MS.gene69259:CDS 50.0%
GCAACTTGCAGTGGATATGC+TGG + chr3.2:63848814-63848833 MS.gene69259:CDS 50.0%
GTGAAGACAGCTTCTTGTGG+TGG + chr3.2:63848761-63848780 MS.gene69259:CDS 50.0%
TCAAAGGCGACACCGGATAA+GGG + chr3.2:63848683-63848702 MS.gene69259:CDS 50.0%
TGTGGAGAAGTGGAGAGAAG+TGG - chr3.2:63849449-63849468 None:intergenic 50.0%
! ACCATCTTTGGTGTATGGCC+TGG + chr3.2:63849903-63849922 MS.gene69259:CDS 50.0%
! CATTTTATATGCAGGGGCCG+GGG + chr3.2:63849406-63849425 MS.gene69259:intron 50.0%
! CCACACCTAGAATCGACTTC+GGG + chr3.2:63849046-63849065 MS.gene69259:intron 50.0%
! GCATTTTATATGCAGGGGCC+GGG + chr3.2:63849405-63849424 MS.gene69259:intron 50.0%
! GCTGCAGCTATGGGAGTTTT+AGG + chr3.2:63849963-63849982 MS.gene69259:CDS 50.0%
! TTGTGTGAGCTCTAGCCACT+AGG + chr3.2:63849475-63849494 MS.gene69259:intron 50.0%
!! CTCAACTTGGCTTTGGCAGT+TGG - chr3.2:63850800-63850819 None:intergenic 50.0%
CACTCCCTCTTCTGCCTTCA+GGG + chr3.2:63848198-63848217 MS.gene69259:CDS 55.0%
CCTCCCATGTCTTGAAGCTC+AGG - chr3.2:63849699-63849718 None:intergenic 55.0%
CCTGAGCTTCAAGACATGGG+AGG + chr3.2:63849696-63849715 MS.gene69259:CDS 55.0%
CTCAAGGGTGGTGTACCTGT+TGG + chr3.2:63851001-63851020 MS.gene69259:CDS 55.0%
GAAGGCAGAAGAGGGAGTGA+TGG - chr3.2:63848197-63848216 None:intergenic 55.0%
GACATGGGAGGTCCAGTTGA+TGG + chr3.2:63849708-63849727 MS.gene69259:CDS 55.0%
GCATACCCTGAAGGCAGAAG+AGG - chr3.2:63848206-63848225 None:intergenic 55.0%
GCTGGTGGTTACAGCAGTGA+TGG + chr3.2:63850863-63850882 MS.gene69259:CDS 55.0%
GGTTCATCAAGGCTCAAGGG+TGG + chr3.2:63850989-63851008 MS.gene69259:CDS 55.0%
GTCAAAGGCGACACCGGATA+AGG + chr3.2:63848682-63848701 MS.gene69259:CDS 55.0%
TCACTCCCTCTTCTGCCTTC+AGG + chr3.2:63848197-63848216 MS.gene69259:CDS 55.0%
TGGGGATGAGCAACTTGCAG+TGG + chr3.2:63848805-63848824 MS.gene69259:CDS 55.0%
! AAGAGGGAGTGATGGAGGGT+AGG - chr3.2:63848189-63848208 None:intergenic 55.0%
! AGAGGGAGTGATGGAGGGTA+GGG - chr3.2:63848188-63848207 None:intergenic 55.0%
! CCCGAAGTCGATTCTAGGTG+TGG - chr3.2:63849049-63849068 None:intergenic 55.0%
! GCAGAAGAGGGAGTGATGGA+GGG - chr3.2:63848193-63848212 None:intergenic 55.0%
! GTGGAGAGAAGTGGAGTGTC+CGG - chr3.2:63849440-63849459 None:intergenic 55.0%
! TGGAGAGAAGTGGAGTGTCC+GGG - chr3.2:63849439-63849458 None:intergenic 55.0%
!! GATGGAGGGTAGGGAGTGTT+TGG - chr3.2:63848179-63848198 None:intergenic 55.0%
GGCAGAAGAGGGAGTGATGG+AGG - chr3.2:63848194-63848213 None:intergenic 60.0%
! GGAGAGAAGTGGAGTGTCCG+GGG - chr3.2:63849438-63849457 None:intergenic 60.0%
AGTGTCCGGGGTTCGAACCC+CGG - chr3.2:63849426-63849445 None:intergenic 65.0%
AGGGGCCGGGGTTCGAACCC+CGG + chr3.2:63849418-63849437 MS.gene69259:intron 75.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 63848121 63851036 63848121 ID=MS.gene69259
chr3.2 mRNA 63848121 63851036 63848121 ID=MS.gene69259.t1;Parent=MS.gene69259
chr3.2 exon 63848121 63848219 63848121 ID=MS.gene69259.t1.exon1;Parent=MS.gene69259.t1
chr3.2 CDS 63848121 63848219 63848121 ID=cds.MS.gene69259.t1;Parent=MS.gene69259.t1
chr3.2 exon 63848389 63848508 63848389 ID=MS.gene69259.t1.exon2;Parent=MS.gene69259.t1
chr3.2 CDS 63848389 63848508 63848389 ID=cds.MS.gene69259.t1;Parent=MS.gene69259.t1
chr3.2 exon 63848671 63848856 63848671 ID=MS.gene69259.t1.exon3;Parent=MS.gene69259.t1
chr3.2 CDS 63848671 63848856 63848671 ID=cds.MS.gene69259.t1;Parent=MS.gene69259.t1
chr3.2 exon 63849648 63849729 63849648 ID=MS.gene69259.t1.exon4;Parent=MS.gene69259.t1
chr3.2 CDS 63849648 63849729 63849648 ID=cds.MS.gene69259.t1;Parent=MS.gene69259.t1
chr3.2 exon 63849835 63850056 63849835 ID=MS.gene69259.t1.exon5;Parent=MS.gene69259.t1
chr3.2 CDS 63849835 63850056 63849835 ID=cds.MS.gene69259.t1;Parent=MS.gene69259.t1
chr3.2 exon 63850331 63850431 63850331 ID=MS.gene69259.t1.exon6;Parent=MS.gene69259.t1
chr3.2 CDS 63850331 63850431 63850331 ID=cds.MS.gene69259.t1;Parent=MS.gene69259.t1
chr3.2 exon 63850525 63850596 63850525 ID=MS.gene69259.t1.exon7;Parent=MS.gene69259.t1
chr3.2 CDS 63850525 63850596 63850525 ID=cds.MS.gene69259.t1;Parent=MS.gene69259.t1
chr3.2 exon 63850755 63851036 63850755 ID=MS.gene69259.t1.exon8;Parent=MS.gene69259.t1
chr3.2 CDS 63850755 63851036 63850755 ID=cds.MS.gene69259.t1;Parent=MS.gene69259.t1
Gene Sequence

>MS.gene69259

ATGGAAACTAGTATAGCATGTTACTCCAGTGGTGCTTTTCTTCGTAGTGTTTCTGCCAAACACTCCCTACCCTCCATCACTCCCTCTTCTGCCTTCAGGGTATGCACAATAATATAATCTTAAGAGTTTTTTATTTCAATGATTAATTTATTGGAAAGTTATGTTATGCTATGCACTTTATTCTATCTTTATGTAACTTCTTTTACGTGTGATATTTATGCTTTAATTTAATTGAACATAATACTAACATATTTTTGCAATGATGCAGAGTTTGAAATCAAGCTCTTTATTTGGAGAATCTCTTAGAGTGTCATCTAAATCAACACTTAAGTTTTCAAGGGCAAAGAGTACTTCAGTCATAACCAAATGCGAAATTGGCGACAGTTTGGTGAGTTACTTACATGTGTGGTCTATGTGTTTTGAACTTATCTACTGACATAAGCACTCGCGAGTCGTGACAATTTCTGCGAGAGCTTATGTAAACAACTTATGACATGTCCATTAGCTTATGAAAACAGTTTGACTTTATGTTGATGTTTGTATATTGTAGGAAGAATTCTTGTCAAAGGCGACACCGGATAAGGGACTGATTAGGTTGATGGTGTGCATGGGAGAAGCATTGAGAACAATTTCTTTCAAAGTGAAGACAGCTTCTTGTGGTGGAACACAATGTGTTAACTCTTTTGGGGATGAGCAACTTGCAGTGGATATGCTGGCTAACAATCTTCTTTTTGAGGTTAGAAAATATCATATTTATCAATGCTTATAGTTTAATCCAATTTATGCACATAGATTAGTCTTGGTCCAATTCCTAGACATTGGATCCATAACATGAATATGTGGCTTTTATGCAGGATTTTGATGTAAAATTGTGATATAACTGAAAAATGATACATGAACCAATGAGATTCCTACAAGAACTTTTCCACACCTAGAATCGACTTCGGGATAACACACTTAAAGGACTAAATTATCTGTCAACTGTATCAGACTTTGTTAGTACAATTAGTTTAGTTGTCGATGCTATCAACGACGTTAGAATCTGATGTACATAACCACTTCCTTGTTAAATTTTATTTTCTCTATTCATAAAGTTCATTTATAGAAACAATTAAAATTTATGAAAGGAAACATGTTTTGTTATGATGAGGATTAATGATATGAGCTTCTTTGATCTTGTATTGAACTAAACTCTTGACCTTTTTTTTTTCTTTATTTCATAATAGTAGGAATAAAATGCCATCTTATTATCTCCATGAGTTTAGCTCAGTTGGTAGGGATATTGCATTTTATATGCAGGGGCCGGGGTTCGAACCCCGGACACTCCACTTCTCTCCACTTCTCCACAATTAAATTGTGTGAGCTCTAGCCACTAGGCTACTTGACCAAAAAAAAATAAAAAATGGCATCTTATTTTCAATGTACAATGAAGCTAAAGTCACCAAATTTCTATGCACAGGCCTTGAAACACTCTCACTTTATTTTCAATGTACAATGAAGCTAAAGTCACCAAATTTCTATGCACAGGCCTTGAAACACTCTCACTTCTGCAAGTACGCTTGCTCAGAAGAAATCCCTGAGCTTCAAGACATGGGAGGTCCAGTTGATGGTATGTCATAATTATACCAAACTATCACTAAAAATATTGTTAATGTCTTATACAAATATATAATTTTTGAGTGTATGGATTTCTCATAATATACGCATCTAACAGGAGGATTTAGTGTTGCATTTGACCCTCTTGATGGTTCAAGCATAGTAGACACAAATTTCACAGTAGGCACCATCTTTGGTGTATGGCCTGGTGATAAGTTGATTGGAGTAACAGGAAGAGATCAAGTTGCTGCAGCTATGGGAGTTTTAGGTCCTAGAACCACTTATGTACTTGCACTTAAGGACTTCCCCGGCACTCATGAATTTCTACTTCTTGATGAAGGTAACATTGATGTCATAAGATTTATGAGATTATAATAAGGTAGCTATTACACTTTATGATATGTTCATTTTAGCGTTAAAGTTCGCAATGACTCTAGACCAAAAAAATGTTTGAGTCGCAATGACTCTAGACCAAAAAAATGTTTGAGGAAAGCAGCACTTTAGAATTTGAAGAATAGAGACTTTTACTTGCTCGATTTAGAGAGAAACTTATCATAGACAAGTATTATCCAAGCTTTATCATATATGACAAAATTATCCAATTGATCTTTCAGGAAAATGGCAGCATGTCAAAGAGACTCATGAAATCGGTGAAGGAAAACTATTCTCTCCAGGAAATTTGAGAGCCACATTTGACAACGCCGATTATGCTAAGGTCTACATTTATCTTACATGAGAAAAATACATTGTTGTTTGTATTATTAACATTTATCAATGAATACTAACTTATTCGTTTTTCATCGATTAGTTGGTCGATTACTATGTTAGAGAAAAATACACCTTGAGATACACTGGAGGAATGGTGCCAGATGTTAACCAGGTTCTTTTCTCAACACATTCATACAAGACATTATAATAAGTCCTTCATACAAAATTACTTCACTAAGACTTATCTATACTATTAATTGAACTCATTTATGTATACATGTTGTAGATGAATATTTTATAAAATATGGTTAATCATCTTTGTATATGCAGATTATTGTAAAAGAAAAGGGAATATTTACAAATGTGACATCACCAACTGCCAAAGCCAAGTTGAGACTGTTGTTTGAGGTAGCTCCATTAGGACTCTTGATTGAAAATGCTGGTGGTTACAGCAGTGATGGCCATAAATCTGTGCTAGACAAGGTCATTGAGAACATTGATGATAGAACTCAAGTTGCTTATGGATCAAAGAATGAGGTCATTAGGTTTGAAGAAACATTGTATGGTTCATCAAGGCTCAAGGGTGGTGTACCTGTTGGAGCAAGTGCTTAA

Protein sequence

>MS.gene69259.t1

METSIACYSSGAFLRSVSAKHSLPSITPSSAFRSLKSSSLFGESLRVSSKSTLKFSRAKSTSVITKCEIGDSLEEFLSKATPDKGLIRLMVCMGEALRTISFKVKTASCGGTQCVNSFGDEQLAVDMLANNLLFEALKHSHFCKYACSEEIPELQDMGGPVDGGFSVAFDPLDGSSIVDTNFTVGTIFGVWPGDKLIGVTGRDQVAAAMGVLGPRTTYVLALKDFPGTHEFLLLDEGKWQHVKETHEIGEGKLFSPGNLRATFDNADYAKLVDYYVREKYTLRYTGGMVPDVNQIIVKEKGIFTNVTSPTAKAKLRLLFEVAPLGLLIENAGGYSSDGHKSVLDKVIENIDDRTQVAYGSKNEVIRFEETLYGSSRLKGGVPVGASA