Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014333.t1 | AFK36584.1 | 99.2 | 122 | 1 | 0 | 1 | 122 | 1 | 122 | 6.20E-38 | 167.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014333.t1 | P26585 | 63.6 | 121 | 43 | 1 | 1 | 121 | 1 | 120 | 3.1e-30 | 132.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014333.t1 | I3S988 | 95.1 | 122 | 6 | 0 | 1 | 122 | 1 | 122 | 4.5e-38 | 167.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene014333.t1 | TR | HMG |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene03201 | MS.gene014333 | PPI |
| MS.gene013786 | MS.gene014333 | PPI |
| MS.gene02572 | MS.gene014333 | PPI |
| MS.gene46264 | MS.gene014333 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014333.t1 | MTR_3g115580 | 98.710 | 155 | 2 | 0 | 1 | 155 | 1 | 155 | 9.43e-103 | 291 |
| MS.gene014333.t1 | MTR_8g073345 | 60.432 | 139 | 46 | 5 | 5 | 143 | 3 | 132 | 7.41e-41 | 134 |
| MS.gene014333.t1 | MTR_5g024180 | 57.895 | 133 | 48 | 4 | 5 | 137 | 3 | 127 | 1.80e-37 | 125 |
| MS.gene014333.t1 | MTR_8g073345 | 60.150 | 133 | 44 | 5 | 5 | 137 | 3 | 126 | 2.25e-37 | 125 |
| MS.gene014333.t1 | MTR_7g068280 | 70.297 | 101 | 28 | 1 | 41 | 141 | 47 | 145 | 7.42e-36 | 122 |
| MS.gene014333.t1 | MTR_7g082820 | 63.855 | 83 | 29 | 1 | 34 | 116 | 2 | 83 | 1.59e-29 | 105 |
| MS.gene014333.t1 | MTR_1g115220 | 60.000 | 80 | 32 | 0 | 41 | 120 | 98 | 177 | 7.05e-27 | 100 |
| MS.gene014333.t1 | MTR_5g024180 | 57.778 | 90 | 34 | 2 | 51 | 137 | 2 | 90 | 7.39e-24 | 89.7 |
| MS.gene014333.t1 | MTR_4g094622 | 47.674 | 86 | 45 | 0 | 35 | 120 | 54 | 139 | 5.44e-23 | 89.0 |
| MS.gene014333.t1 | MTR_1g022345 | 46.667 | 75 | 39 | 1 | 41 | 115 | 554 | 627 | 1.42e-12 | 64.7 |
| MS.gene014333.t1 | MTR_8g099305 | 35.714 | 98 | 60 | 1 | 41 | 138 | 262 | 356 | 3.77e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014333.t1 | AT1G20693 | 66.013 | 153 | 41 | 4 | 1 | 153 | 1 | 142 | 9.88e-54 | 167 |
| MS.gene014333.t1 | AT1G20693 | 65.693 | 137 | 38 | 3 | 1 | 137 | 1 | 128 | 1.46e-47 | 151 |
| MS.gene014333.t1 | AT1G20693 | 65.693 | 137 | 38 | 3 | 1 | 137 | 1 | 128 | 1.51e-47 | 151 |
| MS.gene014333.t1 | AT1G20696 | 63.504 | 137 | 38 | 3 | 1 | 137 | 1 | 125 | 8.19e-46 | 146 |
| MS.gene014333.t1 | AT2G17560 | 54.483 | 145 | 54 | 4 | 1 | 144 | 1 | 134 | 2.04e-41 | 135 |
| MS.gene014333.t1 | AT2G17560 | 52.258 | 155 | 56 | 4 | 1 | 155 | 1 | 137 | 4.95e-41 | 134 |
| MS.gene014333.t1 | AT2G17560 | 52.258 | 155 | 56 | 4 | 1 | 155 | 1 | 137 | 4.95e-41 | 134 |
| MS.gene014333.t1 | AT1G20696 | 60.800 | 125 | 39 | 2 | 1 | 125 | 1 | 115 | 8.56e-41 | 134 |
| MS.gene014333.t1 | AT1G20696 | 63.559 | 118 | 33 | 2 | 1 | 118 | 1 | 108 | 1.07e-40 | 134 |
| MS.gene014333.t1 | AT3G51880 | 65.517 | 116 | 33 | 2 | 26 | 141 | 36 | 144 | 1.49e-39 | 132 |
| MS.gene014333.t1 | AT3G51880 | 69.608 | 102 | 26 | 1 | 40 | 141 | 48 | 144 | 1.85e-39 | 132 |
| MS.gene014333.t1 | AT3G51880 | 69.608 | 102 | 26 | 1 | 40 | 141 | 48 | 144 | 1.85e-39 | 132 |
| MS.gene014333.t1 | AT3G51880 | 69.608 | 102 | 26 | 1 | 40 | 141 | 48 | 144 | 1.85e-39 | 132 |
| MS.gene014333.t1 | AT3G51880 | 69.388 | 98 | 25 | 1 | 40 | 137 | 48 | 140 | 2.41e-37 | 125 |
| MS.gene014333.t1 | AT1G20696 | 66.327 | 98 | 29 | 2 | 53 | 150 | 1 | 94 | 1.56e-33 | 114 |
| MS.gene014333.t1 | AT4G35570 | 46.667 | 120 | 53 | 1 | 1 | 120 | 1 | 109 | 2.12e-32 | 112 |
| MS.gene014333.t1 | AT4G35570 | 46.667 | 120 | 53 | 1 | 1 | 120 | 1 | 109 | 2.12e-32 | 112 |
| MS.gene014333.t1 | AT1G20696 | 64.706 | 85 | 28 | 1 | 53 | 137 | 1 | 83 | 1.80e-28 | 101 |
| MS.gene014333.t1 | AT2G34450 | 37.374 | 99 | 47 | 1 | 45 | 143 | 63 | 146 | 2.61e-19 | 79.3 |
| MS.gene014333.t1 | AT2G34450 | 37.374 | 99 | 47 | 1 | 45 | 143 | 63 | 146 | 2.61e-19 | 79.3 |
| MS.gene014333.t1 | AT2G34450 | 37.374 | 99 | 47 | 1 | 45 | 143 | 63 | 146 | 2.61e-19 | 79.3 |
| MS.gene014333.t1 | AT2G34450 | 37.000 | 100 | 47 | 2 | 45 | 143 | 63 | 147 | 6.07e-18 | 75.9 |
| MS.gene014333.t1 | AT5G23420 | 46.739 | 92 | 41 | 2 | 26 | 110 | 89 | 179 | 1.31e-15 | 71.6 |
| MS.gene014333.t1 | AT4G23800 | 45.000 | 80 | 39 | 2 | 41 | 118 | 375 | 451 | 9.97e-12 | 62.0 |
| MS.gene014333.t1 | AT4G23800 | 45.000 | 80 | 39 | 2 | 41 | 118 | 369 | 445 | 1.04e-11 | 62.0 |
Find 46 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGGTCTCTTAGGCTTGTT+AGG | 0.179440 | 3.4:-98739653 | None:intergenic |
| TTTCTTGTTATATGCCTTCA+TGG | 0.203700 | 3.4:-98740334 | None:intergenic |
| TTACTTAGCATCGGCTTTCT+TGG | 0.250421 | 3.4:-98739365 | None:intergenic |
| CTTGGATTCACCCTTGGACT+TGG | 0.277403 | 3.4:-98739347 | None:intergenic |
| AAAGCACTTGGAGGTCTCTT+AGG | 0.309499 | 3.4:-98739662 | None:intergenic |
| TTAGGCTTGTTAGGGTCCTT+TGG | 0.339552 | 3.4:-98739644 | None:intergenic |
| TTTGGTTCCTTTCCCTTGGC+TGG | 0.339914 | 3.4:-98739626 | None:intergenic |
| GCAGACACAGCTTTGTTGTC+AGG | 0.342321 | 3.4:-98740040 | None:intergenic |
| GTCCTTTGGTTCCTTTCCCT+TGG | 0.359297 | 3.4:-98739630 | None:intergenic |
| GGCTGGTTTCCTTCCGCCCT+TGG | 0.371407 | 3.4:-98739609 | None:intergenic |
| GCTGTTGAGGAAGAAGAATC+TGG | 0.372128 | 3.4:+98740455 | MS.gene014333:CDS |
| TTGCAGGTGGGCAAAGCTGC+TGG | 0.380613 | 3.4:+98740139 | MS.gene014333:intron |
| GGCTTTCTTGGATTCACCCT+TGG | 0.397041 | 3.4:-98739353 | None:intergenic |
| TTTCCTTCCGCCCTTGGTAG+TGG | 0.445999 | 3.4:-98739603 | None:intergenic |
| GCAAAGCTGCTGGAGCAAAA+TGG | 0.450601 | 3.4:+98740149 | MS.gene014333:CDS |
| GAAGGCATATAACAAGAAAC+AGG | 0.452913 | 3.4:+98740338 | MS.gene014333:CDS |
| GAGGTCTCTTAGGCTTGTTA+GGG | 0.458151 | 3.4:-98739652 | None:intergenic |
| TCTTCTTCCTCAACAGCAGC+TGG | 0.462822 | 3.4:-98740449 | None:intergenic |
| GGCGGCGCCCTTCTTATTCA+CGG | 0.463220 | 3.4:-98739582 | None:intergenic |
| CAGACACAGCTTTGTTGTCA+GGG | 0.494732 | 3.4:-98740039 | None:intergenic |
| ATGCAGCAAAAGCAGAGAAA+AGG | 0.511362 | 3.4:+98740292 | MS.gene014333:CDS |
| TGAAGGTCCAGCTGCTGTTG+AGG | 0.526952 | 3.4:+98740442 | MS.gene014333:CDS |
| GAAGGGCGCCGCCACTACCA+AGG | 0.539172 | 3.4:+98739592 | MS.gene014333:CDS |
| GGGCGGAAGGAAACCAGCCA+AGG | 0.544457 | 3.4:+98739613 | MS.gene014333:CDS |
| TAGGCTTGCCGTGAATAAGA+AGG | 0.545546 | 3.4:+98739574 | MS.gene014333:intron |
| AAGGAAACCAGCCAAGGGAA+AGG | 0.549929 | 3.4:+98739619 | MS.gene014333:CDS |
| TGTGATTGTTGTCAGGCTGA+AGG | 0.555256 | 3.4:+98740425 | MS.gene014333:intron |
| GGATTGAACTTACTTAGCAT+CGG | 0.556269 | 3.4:-98739374 | None:intergenic |
| AAAACGAAGAAAGCACTTGG+AGG | 0.558317 | 3.4:-98739671 | None:intergenic |
| AGCCAAGGGAAAGGAACCAA+AGG | 0.561691 | 3.4:+98739628 | MS.gene014333:CDS |
| CTGTTGAGGAAGAAGAATCT+GGG | 0.568023 | 3.4:+98740456 | MS.gene014333:CDS |
| AAGGGCGCCGCCACTACCAA+GGG | 0.571773 | 3.4:+98739593 | MS.gene014333:CDS |
| CCGCCACTACCAAGGGCGGA+AGG | 0.572782 | 3.4:+98739600 | MS.gene014333:CDS |
| ATGAAAACGAAGAAAGCACT+TGG | 0.589018 | 3.4:-98739674 | None:intergenic |
| CATGAAAGGAGCCAAGTCCA+AGG | 0.590256 | 3.4:+98739336 | None:intergenic |
| CCTTCCGCCCTTGGTAGTGG+CGG | 0.599374 | 3.4:-98739600 | None:intergenic |
| TGAAGTGCATGATGAGAATG+AGG | 0.606285 | 3.4:+98740490 | MS.gene014333:CDS |
| GGCGCCGCCACTACCAAGGG+CGG | 0.610298 | 3.4:+98739596 | MS.gene014333:CDS |
| AGGCTTGCCGTGAATAAGAA+GGG | 0.612713 | 3.4:+98739575 | MS.gene014333:intron |
| AGAATATGAGAAAACCATGA+AGG | 0.619628 | 3.4:+98740320 | MS.gene014333:CDS |
| TGAGAATGAGGATGATGATG+AGG | 0.623282 | 3.4:+98740502 | MS.gene014333:CDS |
| AATGAGGATGATGATGAGGA+TGG | 0.627725 | 3.4:+98740506 | MS.gene014333:CDS |
| ATGAAAGGAGCCAAGTCCAA+GGG | 0.636209 | 3.4:+98739337 | MS.gene014333:CDS |
| GGCGGAAGGAAACCAGCCAA+GGG | 0.638094 | 3.4:+98739614 | MS.gene014333:CDS |
| AGCAAAAGCAGAGAAAAGGA+AGG | 0.642820 | 3.4:+98740296 | MS.gene014333:CDS |
| TGATGAGGATGGCAGTGAAG+AGG | 0.697028 | 3.4:+98740517 | MS.gene014333:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTATTCAATTATAATAAT+TGG | - | chr3.4:98739811-98739830 | None:intergenic | 10.0% |
| !! | AAGAGGAAATTATGAAAAAA+CGG | - | chr3.4:98739398-98739417 | None:intergenic | 20.0% |
| !! | GTATGTACTGTTATATTTAT+TGG | + | chr3.4:98740190-98740209 | MS.gene014333:intron | 20.0% |
| !!! | ATTGATATTGTTGATTTTGA+TGG | + | chr3.4:98739551-98739570 | MS.gene014333:intron | 20.0% |
| !!! | TTTTTATTCTGAAATTTGTG+TGG | + | chr3.4:98739974-98739993 | MS.gene014333:intron | 20.0% |
| ! | AAATTTGTGTGGTCTTTATA+GGG | + | chr3.4:98739985-98740004 | MS.gene014333:intron | 25.0% |
| ! | ATTTATTTGTGATTGTTGTC+AGG | + | chr3.4:98740418-98740437 | MS.gene014333:intron | 25.0% |
| ! | GCAAAAAATCGAGTAAATTA+GGG | + | chr3.4:98739444-98739463 | MS.gene014333:intron | 25.0% |
| ! | GTTGTAAGTAAATGCAAATT+GGG | + | chr3.4:98740378-98740397 | MS.gene014333:intron | 25.0% |
| ! | TGTTGTAAGTAAATGCAAAT+TGG | + | chr3.4:98740377-98740396 | MS.gene014333:intron | 25.0% |
| ! | TTTGTTGAATATCACTTTGT+AGG | + | chr3.4:98740560-98740579 | MS.gene014333:intron | 25.0% |
| !! | AACTAGCATAATTTCTCTTT+TGG | + | chr3.4:98739505-98739524 | MS.gene014333:intron | 25.0% |
| !!! | ATATTGTTGATTTTGATGGT+AGG | + | chr3.4:98739555-98739574 | MS.gene014333:intron | 25.0% |
| AGAATATGAGAAAACCATGA+AGG | + | chr3.4:98740320-98740339 | MS.gene014333:CDS | 30.0% | |
| AGCGAATAAAACGATTTAAG+AGG | - | chr3.4:98739415-98739434 | None:intergenic | 30.0% | |
| GAAATTTGTGTGGTCTTTAT+AGG | + | chr3.4:98739984-98740003 | MS.gene014333:intron | 30.0% | |
| GGCAAAAAATCGAGTAAATT+AGG | + | chr3.4:98739443-98739462 | MS.gene014333:intron | 30.0% | |
| TAAATGCAAATTGGGTAACT+AGG | + | chr3.4:98740386-98740405 | MS.gene014333:intron | 30.0% | |
| TGCTTATTACATGCGATATA+AGG | - | chr3.4:98740093-98740112 | None:intergenic | 30.0% | |
| ! | CATCTGTATATGAATTTTGC+AGG | + | chr3.4:98740123-98740142 | MS.gene014333:intron | 30.0% |
| ! | TGTATATGAATTTTGCAGGT+GGG | + | chr3.4:98740127-98740146 | MS.gene014333:intron | 30.0% |
| ! | TTTCTTGTTATATGCCTTCA+TGG | - | chr3.4:98740337-98740356 | None:intergenic | 30.0% |
| ATAAAAATGTCGAAGTCCCA+CGG | - | chr3.4:98739938-98739957 | None:intergenic | 35.0% | |
| ATATGCTGTGATTGAACGTT+TGG | + | chr3.4:98740240-98740259 | MS.gene014333:intron | 35.0% | |
| CGTTCAATCACAGCATATAA+TGG | - | chr3.4:98740238-98740257 | None:intergenic | 35.0% | |
| GCATATAACAAGAAACAGGT+CGG | + | chr3.4:98740342-98740361 | MS.gene014333:intron | 35.0% | |
| GGATTGAACTTACTTAGCAT+CGG | - | chr3.4:98739377-98739396 | None:intergenic | 35.0% | |
| GTTTGGTCTCTGGATTTATT+AGG | + | chr3.4:98740257-98740276 | MS.gene014333:intron | 35.0% | |
| TAAGGCCAGTAAAACAACAA+CGG | - | chr3.4:98740075-98740094 | None:intergenic | 35.0% | |
| TTGTTCCTTATGTTTCATGC+AGG | + | chr3.4:98740609-98740628 | MS.gene014333:intron | 35.0% | |
| ! | CAGTCATAACTGTTTTCACA+CGG | - | chr3.4:98739901-98739920 | None:intergenic | 35.0% |
| ! | CTGTATATGAATTTTGCAGG+TGG | + | chr3.4:98740126-98740145 | MS.gene014333:intron | 35.0% |
| ! | GAAGGCATATAACAAGAAAC+AGG | + | chr3.4:98740338-98740357 | MS.gene014333:CDS | 35.0% |
| ! | GTCTTTATAGGGAGGATTTT+AGG | + | chr3.4:98739996-98740015 | MS.gene014333:intron | 35.0% |
| !! | ATGAAAACGAAGAAAGCACT+TGG | - | chr3.4:98739677-98739696 | None:intergenic | 35.0% |
| !! | CGTTTTATTCGCTTTCGATT+TGG | + | chr3.4:98739422-98739441 | MS.gene014333:intron | 35.0% |
| !! | TTTTAGGAAGCAGTTCAAGA+AGG | + | chr3.4:98740012-98740031 | MS.gene014333:CDS | 35.0% |
| !!! | AGTATCCGTTGTTGTTTTAC+TGG | + | chr3.4:98740067-98740086 | MS.gene014333:intron | 35.0% |
| AGCAAAAGCAGAGAAAAGGA+AGG | + | chr3.4:98740296-98740315 | MS.gene014333:CDS | 40.0% | |
| ATGCAGCAAAAGCAGAGAAA+AGG | + | chr3.4:98740292-98740311 | MS.gene014333:CDS | 40.0% | |
| CTGTTGAGGAAGAAGAATCT+GGG | + | chr3.4:98740456-98740475 | MS.gene014333:CDS | 40.0% | |
| TGAAGTGCATGATGAGAATG+AGG | + | chr3.4:98740490-98740509 | MS.gene014333:CDS | 40.0% | |
| TTCCTTATGTTTCATGCAGG+AGG | + | chr3.4:98740612-98740631 | MS.gene014333:intron | 40.0% | |
| TTTGTGTGGTCTTTATAGGG+AGG | + | chr3.4:98739988-98740007 | MS.gene014333:intron | 40.0% | |
| ! | AATGAGGATGATGATGAGGA+TGG | + | chr3.4:98740506-98740525 | MS.gene014333:CDS | 40.0% |
| ! | CGATTTTCAGATCTCAGATC+TGG | - | chr3.4:98739481-98739500 | None:intergenic | 40.0% |
| ! | GTTTTCACACGGTATAAGAC+AGG | - | chr3.4:98739890-98739909 | None:intergenic | 40.0% |
| ! | TGAGAATGAGGATGATGATG+AGG | + | chr3.4:98740502-98740521 | MS.gene014333:CDS | 40.0% |
| !! | AAAACGAAGAAAGCACTTGG+AGG | - | chr3.4:98739674-98739693 | None:intergenic | 40.0% |
| !! | TTACTTAGCATCGGCTTTCT+TGG | - | chr3.4:98739368-98739387 | None:intergenic | 40.0% |
| !! | TTCTCTGCTTTTGCTGCATA+TGG | - | chr3.4:98740291-98740310 | None:intergenic | 40.0% |
| AGGCTTGCCGTGAATAAGAA+GGG | + | chr3.4:98739575-98739594 | MS.gene014333:intron | 45.0% | |
| ATGAAAGGAGCCAAGTCCAA+GGG | + | chr3.4:98739337-98739356 | MS.gene014333:CDS | 45.0% | |
| CTCCTCCTGCATGAAACATA+AGG | - | chr3.4:98740617-98740636 | None:intergenic | 45.0% | |
| CTTATGTTTCATGCAGGAGG+AGG | + | chr3.4:98740615-98740634 | MS.gene014333:intron | 45.0% | |
| GCTGTTGAGGAAGAAGAATC+TGG | + | chr3.4:98740455-98740474 | MS.gene014333:CDS | 45.0% | |
| GTGATTGAACGTTTGGTCTC+TGG | + | chr3.4:98740247-98740266 | MS.gene014333:intron | 45.0% | |
| TAGGCTTGCCGTGAATAAGA+AGG | + | chr3.4:98739574-98739593 | MS.gene014333:intron | 45.0% | |
| TGCTGAGTTATGATGACCGT+GGG | + | chr3.4:98739919-98739938 | MS.gene014333:intron | 45.0% | |
| TGTGATTGTTGTCAGGCTGA+AGG | + | chr3.4:98740425-98740444 | MS.gene014333:intron | 45.0% | |
| ! | AAAGCACTTGGAGGTCTCTT+AGG | - | chr3.4:98739665-98739684 | None:intergenic | 45.0% |
| !! | CAGACACAGCTTTGTTGTCA+GGG | - | chr3.4:98740042-98740061 | None:intergenic | 45.0% |
| !! | GAGGTCTCTTAGGCTTGTTA+GGG | - | chr3.4:98739655-98739674 | None:intergenic | 45.0% |
| !! | TTAGGCTTGTTAGGGTCCTT+TGG | - | chr3.4:98739647-98739666 | None:intergenic | 45.0% |
| AAGGAAACCAGCCAAGGGAA+AGG | + | chr3.4:98739619-98739638 | MS.gene014333:CDS | 50.0% | |
| AGCCAAGGGAAAGGAACCAA+AGG | + | chr3.4:98739628-98739647 | MS.gene014333:CDS | 50.0% | |
| CTGCTGAGTTATGATGACCG+TGG | + | chr3.4:98739918-98739937 | MS.gene014333:intron | 50.0% | |
| CTTGGATTCACCCTTGGACT+TGG | - | chr3.4:98739350-98739369 | None:intergenic | 50.0% | |
| GCAAAGCTGCTGGAGCAAAA+TGG | + | chr3.4:98740149-98740168 | MS.gene014333:CDS | 50.0% | |
| GGCTTTCTTGGATTCACCCT+TGG | - | chr3.4:98739356-98739375 | None:intergenic | 50.0% | |
| TCTTCTTCCTCAACAGCAGC+TGG | - | chr3.4:98740452-98740471 | None:intergenic | 50.0% | |
| TGATGAGGATGGCAGTGAAG+AGG | + | chr3.4:98740517-98740536 | MS.gene014333:CDS | 50.0% | |
| ! | GGAGGTCTCTTAGGCTTGTT+AGG | - | chr3.4:98739656-98739675 | None:intergenic | 50.0% |
| ! | GTCCTTTGGTTCCTTTCCCT+TGG | - | chr3.4:98739633-98739652 | None:intergenic | 50.0% |
| ! | TTTGGTTCCTTTCCCTTGGC+TGG | - | chr3.4:98739629-98739648 | None:intergenic | 50.0% |
| !! | GCAGACACAGCTTTGTTGTC+AGG | - | chr3.4:98740043-98740062 | None:intergenic | 50.0% |
| TGAAGGTCCAGCTGCTGTTG+AGG | + | chr3.4:98740442-98740461 | MS.gene014333:CDS | 55.0% | |
| TTTCCTTCCGCCCTTGGTAG+TGG | - | chr3.4:98739606-98739625 | None:intergenic | 55.0% | |
| GGCGGAAGGAAACCAGCCAA+GGG | + | chr3.4:98739614-98739633 | MS.gene014333:CDS | 60.0% | |
| GGCGGCGCCCTTCTTATTCA+CGG | - | chr3.4:98739585-98739604 | None:intergenic | 60.0% | |
| TTGCAGGTGGGCAAAGCTGC+TGG | + | chr3.4:98740139-98740158 | MS.gene014333:intron | 60.0% | |
| GGGCGGAAGGAAACCAGCCA+AGG | + | chr3.4:98739613-98739632 | MS.gene014333:CDS | 65.0% | |
| !! | AAGGGCGCCGCCACTACCAA+GGG | + | chr3.4:98739593-98739612 | MS.gene014333:CDS | 65.0% |
| !! | CCTTCCGCCCTTGGTAGTGG+CGG | - | chr3.4:98739603-98739622 | None:intergenic | 65.0% |
| !! | GGCTGGTTTCCTTCCGCCCT+TGG | - | chr3.4:98739612-98739631 | None:intergenic | 65.0% |
| CCGCCACTACCAAGGGCGGA+AGG | + | chr3.4:98739600-98739619 | MS.gene014333:CDS | 70.0% | |
| !! | GAAGGGCGCCGCCACTACCA+AGG | + | chr3.4:98739592-98739611 | MS.gene014333:CDS | 70.0% |
| GGCGCCGCCACTACCAAGGG+CGG | + | chr3.4:98739596-98739615 | MS.gene014333:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 98739337 | 98740648 | 98739337 | ID=MS.gene014333 |
| chr3.4 | mRNA | 98739337 | 98740648 | 98739337 | ID=MS.gene014333.t1;Parent=MS.gene014333 |
| chr3.4 | exon | 98739337 | 98739383 | 98739337 | ID=MS.gene014333.t1.exon1;Parent=MS.gene014333.t1 |
| chr3.4 | CDS | 98739337 | 98739383 | 98739337 | ID=cds.MS.gene014333.t1;Parent=MS.gene014333.t1 |
| chr3.4 | exon | 98739577 | 98739696 | 98739577 | ID=MS.gene014333.t1.exon2;Parent=MS.gene014333.t1 |
| chr3.4 | CDS | 98739577 | 98739696 | 98739577 | ID=cds.MS.gene014333.t1;Parent=MS.gene014333.t1 |
| chr3.4 | exon | 98740006 | 98740063 | 98740006 | ID=MS.gene014333.t1.exon3;Parent=MS.gene014333.t1 |
| chr3.4 | CDS | 98740006 | 98740063 | 98740006 | ID=cds.MS.gene014333.t1;Parent=MS.gene014333.t1 |
| chr3.4 | exon | 98740145 | 98740189 | 98740145 | ID=MS.gene014333.t1.exon4;Parent=MS.gene014333.t1 |
| chr3.4 | CDS | 98740145 | 98740189 | 98740145 | ID=cds.MS.gene014333.t1;Parent=MS.gene014333.t1 |
| chr3.4 | exon | 98740279 | 98740359 | 98740279 | ID=MS.gene014333.t1.exon5;Parent=MS.gene014333.t1 |
| chr3.4 | CDS | 98740279 | 98740359 | 98740279 | ID=cds.MS.gene014333.t1;Parent=MS.gene014333.t1 |
| chr3.4 | exon | 98740440 | 98740538 | 98740440 | ID=MS.gene014333.t1.exon6;Parent=MS.gene014333.t1 |
| chr3.4 | CDS | 98740440 | 98740538 | 98740440 | ID=cds.MS.gene014333.t1;Parent=MS.gene014333.t1 |
| chr3.4 | exon | 98740631 | 98740648 | 98740631 | ID=MS.gene014333.t1.exon7;Parent=MS.gene014333.t1 |
| chr3.4 | CDS | 98740631 | 98740648 | 98740631 | ID=cds.MS.gene014333.t1;Parent=MS.gene014333.t1 |
| Gene Sequence |
| Protein sequence |
