Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33588.t1 | XP_003589593.1 | 99.5 | 185 | 1 | 0 | 1 | 185 | 1 | 185 | 3.00E-100 | 374.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33588.t1 | Q84QC1 | 69.7 | 185 | 56 | 0 | 1 | 185 | 1 | 185 | 1.1e-71 | 270.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33588.t1 | G7I8G3 | 99.5 | 185 | 1 | 0 | 1 | 185 | 1 | 185 | 2.2e-100 | 374.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049170 | MS.gene33588 | 0.803486 | 3.41E-49 | -1.69E-46 |
| MS.gene049351 | MS.gene33588 | 0.833455 | 5.28E-56 | -1.69E-46 |
| MS.gene049356 | MS.gene33588 | 0.802066 | 6.69E-49 | -1.69E-46 |
| MS.gene049609 | MS.gene33588 | 0.823393 | 1.42E-53 | -1.69E-46 |
| MS.gene049805 | MS.gene33588 | 0.801635 | 8.20E-49 | -1.69E-46 |
| MS.gene050301 | MS.gene33588 | 0.818745 | 1.67E-52 | -1.69E-46 |
| MS.gene050397 | MS.gene33588 | 0.829304 | 5.55E-55 | -1.69E-46 |
| MS.gene050670 | MS.gene33588 | 0.835447 | 1.67E-56 | -1.69E-46 |
| MS.gene050772 | MS.gene33588 | 0.812378 | 4.37E-51 | -1.69E-46 |
| MS.gene050971 | MS.gene33588 | 0.812269 | 4.61E-51 | -1.69E-46 |
| MS.gene05105 | MS.gene33588 | 0.862956 | 3.51E-64 | -1.69E-46 |
| MS.gene051255 | MS.gene33588 | 0.835834 | 1.33E-56 | -1.69E-46 |
| MS.gene051360 | MS.gene33588 | 0.825538 | 4.44E-54 | -1.69E-46 |
| MS.gene051387 | MS.gene33588 | 0.814872 | 1.23E-51 | -1.69E-46 |
| MS.gene051525 | MS.gene33588 | 0.824504 | 7.79E-54 | -1.69E-46 |
| MS.gene051858 | MS.gene33588 | 0.826141 | 3.19E-54 | -1.69E-46 |
| MS.gene052078 | MS.gene33588 | 0.81267 | 3.77E-51 | -1.69E-46 |
| MS.gene052188 | MS.gene33588 | 0.816753 | 4.70E-52 | -1.69E-46 |
| MS.gene052253 | MS.gene33588 | 0.84526 | 4.54E-59 | -1.69E-46 |
| MS.gene052310 | MS.gene33588 | 0.822205 | 2.68E-53 | -1.69E-46 |
| MS.gene052322 | MS.gene33588 | 0.848876 | 4.63E-60 | -1.69E-46 |
| MS.gene052421 | MS.gene33588 | 0.837062 | 6.49E-57 | -1.69E-46 |
| MS.gene052481 | MS.gene33588 | 0.811671 | 6.23E-51 | -1.69E-46 |
| MS.gene052484 | MS.gene33588 | 0.813439 | 2.56E-51 | -1.69E-46 |
| MS.gene052485 | MS.gene33588 | 0.813872 | 2.05E-51 | -1.69E-46 |
| MS.gene052870 | MS.gene33588 | 0.816652 | 4.95E-52 | -1.69E-46 |
| MS.gene052982 | MS.gene33588 | 0.823934 | 1.06E-53 | -1.69E-46 |
| MS.gene053103 | MS.gene33588 | 0.82639 | 2.78E-54 | -1.69E-46 |
| MS.gene053104 | MS.gene33588 | 0.801567 | 8.47E-49 | -1.69E-46 |
| MS.gene053207 | MS.gene33588 | 0.817943 | 2.54E-52 | -1.69E-46 |
| MS.gene053209 | MS.gene33588 | 0.885129 | 1.06E-71 | -1.69E-46 |
| MS.gene053449 | MS.gene33588 | 0.803308 | 3.71E-49 | -1.69E-46 |
| MS.gene053758 | MS.gene33588 | 0.802494 | 5.46E-49 | -1.69E-46 |
| MS.gene054556 | MS.gene33588 | 0.814517 | 1.48E-51 | -1.69E-46 |
| MS.gene05494 | MS.gene33588 | 0.819399 | 1.19E-52 | -1.69E-46 |
| MS.gene05505 | MS.gene33588 | 0.846127 | 2.64E-59 | -1.69E-46 |
| MS.gene055116 | MS.gene33588 | 0.821026 | 5.02E-53 | -1.69E-46 |
| MS.gene055277 | MS.gene33588 | 0.827754 | 1.31E-54 | -1.69E-46 |
| MS.gene055412 | MS.gene33588 | 0.814118 | 1.81E-51 | -1.69E-46 |
| MS.gene055722 | MS.gene33588 | 0.827483 | 1.53E-54 | -1.69E-46 |
| MS.gene05592 | MS.gene33588 | 0.809324 | 2.00E-50 | -1.69E-46 |
| MS.gene056191 | MS.gene33588 | 0.802436 | 5.62E-49 | -1.69E-46 |
| MS.gene056410 | MS.gene33588 | 0.835385 | 1.73E-56 | -1.69E-46 |
| MS.gene056511 | MS.gene33588 | 0.806052 | 9.92E-50 | -1.69E-46 |
| MS.gene056611 | MS.gene33588 | 0.800594 | 1.34E-48 | -1.69E-46 |
| MS.gene056796 | MS.gene33588 | 0.848461 | 6.04E-60 | -1.69E-46 |
| MS.gene056897 | MS.gene33588 | 0.802433 | 5.62E-49 | -1.69E-46 |
| MS.gene056902 | MS.gene33588 | 0.80195 | 7.07E-49 | -1.69E-46 |
| MS.gene057124 | MS.gene33588 | 0.812886 | 3.38E-51 | -1.69E-46 |
| MS.gene057331 | MS.gene33588 | 0.80345 | 3.47E-49 | -1.69E-46 |
| MS.gene057749 | MS.gene33588 | 0.807569 | 4.74E-50 | -1.69E-46 |
| MS.gene057823 | MS.gene33588 | 0.816714 | 4.80E-52 | -1.69E-46 |
| MS.gene058006 | MS.gene33588 | 0.802399 | 5.72E-49 | -1.69E-46 |
| MS.gene058007 | MS.gene33588 | 0.807952 | 3.93E-50 | -1.69E-46 |
| MS.gene058082 | MS.gene33588 | 0.81576 | 7.84E-52 | -1.69E-46 |
| MS.gene05811 | MS.gene33588 | 0.826162 | 3.16E-54 | -1.69E-46 |
| MS.gene058293 | MS.gene33588 | 0.809773 | 1.60E-50 | -1.69E-46 |
| MS.gene058376 | MS.gene33588 | 0.81989 | 9.16E-53 | -1.69E-46 |
| MS.gene058444 | MS.gene33588 | 0.811998 | 5.29E-51 | -1.69E-46 |
| MS.gene058660 | MS.gene33588 | 0.807264 | 5.50E-50 | -1.69E-46 |
| MS.gene058700 | MS.gene33588 | 0.833088 | 6.52E-56 | -1.69E-46 |
| MS.gene058928 | MS.gene33588 | 0.803786 | 2.95E-49 | -1.69E-46 |
| MS.gene058948 | MS.gene33588 | 0.825661 | 4.15E-54 | -1.69E-46 |
| MS.gene05907 | MS.gene33588 | 0.81151 | 6.75E-51 | -1.69E-46 |
| MS.gene059366 | MS.gene33588 | 0.811066 | 8.43E-51 | -1.69E-46 |
| MS.gene059536 | MS.gene33588 | 0.812844 | 3.45E-51 | -1.69E-46 |
| MS.gene059676 | MS.gene33588 | 0.819514 | 1.12E-52 | -1.69E-46 |
| MS.gene059688 | MS.gene33588 | 0.850598 | 1.53E-60 | -1.69E-46 |
| MS.gene059692 | MS.gene33588 | 0.852439 | 4.61E-61 | -1.69E-46 |
| MS.gene059695 | MS.gene33588 | 0.852124 | 5.67E-61 | -1.69E-46 |
| MS.gene059711 | MS.gene33588 | 0.817865 | 2.64E-52 | -1.69E-46 |
| MS.gene05984 | MS.gene33588 | 0.819227 | 1.30E-52 | -1.69E-46 |
| MS.gene059902 | MS.gene33588 | 0.82825 | 9.98E-55 | -1.69E-46 |
| MS.gene059974 | MS.gene33588 | 0.818142 | 2.29E-52 | -1.69E-46 |
| MS.gene06037 | MS.gene33588 | 0.803625 | 3.19E-49 | -1.69E-46 |
| MS.gene060403 | MS.gene33588 | 0.811978 | 5.34E-51 | -1.69E-46 |
| MS.gene060804 | MS.gene33588 | 0.80482 | 1.80E-49 | -1.69E-46 |
| MS.gene060837 | MS.gene33588 | 0.875782 | 2.35E-68 | -1.69E-46 |
| MS.gene061049 | MS.gene33588 | 0.804208 | 2.41E-49 | -1.69E-46 |
| MS.gene061154 | MS.gene33588 | 0.852825 | 3.58E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene33588 | MS.gene40358 | PPI |
| MS.gene014703 | MS.gene33588 | PPI |
| MS.gene073038 | MS.gene33588 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33588.t1 | MTR_1g030430 | 99.459 | 185 | 1 | 0 | 1 | 185 | 1 | 185 | 1.22e-136 | 379 |
| MS.gene33588.t1 | MTR_3g109250 | 54.444 | 180 | 81 | 1 | 1 | 179 | 1 | 180 | 4.00e-69 | 209 |
| MS.gene33588.t1 | MTR_1g009210 | 54.098 | 183 | 82 | 2 | 1 | 182 | 1 | 182 | 2.66e-67 | 204 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33588.t1 | AT1G44790 | 69.730 | 185 | 56 | 0 | 1 | 185 | 1 | 185 | 1.29e-95 | 276 |
| MS.gene33588.t1 | AT5G26220 | 54.396 | 182 | 82 | 1 | 1 | 181 | 1 | 182 | 4.97e-69 | 209 |
| MS.gene33588.t1 | AT4G31290 | 52.717 | 184 | 86 | 1 | 1 | 183 | 1 | 184 | 3.08e-67 | 205 |
| MS.gene33588.t1 | AT5G26220 | 52.874 | 174 | 81 | 1 | 1 | 173 | 1 | 174 | 5.32e-64 | 195 |
Find 43 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACATGGCAATATGGGTATT+TGG | 0.235187 | 1.1:-16022355 | MS.gene33588:CDS |
| CCACCACAAACATGGCAATA+TGG | 0.253544 | 1.1:-16022363 | None:intergenic |
| GCTACAACGCCAGCTATTTC+CGG | 0.314593 | 1.1:-16019251 | MS.gene33588:CDS |
| GAAAAGGCTCTCCTTCAAAT+AGG | 0.367256 | 1.1:-16018062 | MS.gene33588:intron |
| TTTACATTGACCTTCTTGTC+TGG | 0.370032 | 1.1:+16019121 | None:intergenic |
| CACCACAAACATGGCAATAT+GGG | 0.400036 | 1.1:-16022362 | None:intergenic |
| AGAGGAACCCCTGAGTTTCC+TGG | 0.406968 | 1.1:-16022149 | MS.gene33588:CDS |
| CTACAACGCCAGCTATTTCC+GGG | 0.409648 | 1.1:-16019250 | MS.gene33588:CDS |
| AACTACGATGAACGTCTTGT+TGG | 0.410652 | 1.1:-16022301 | MS.gene33588:CDS |
| AAAGATCCTTACCTATTTGA+AGG | 0.411187 | 1.1:+16018051 | None:intergenic |
| AGGAAAAGATACTCTCTGTT+AGG | 0.426813 | 1.1:+16018089 | None:intergenic |
| GCAATATGGGTATTTGGTTA+CGG | 0.427063 | 1.1:-16022349 | MS.gene33588:CDS |
| GCCAGCTATTTCCGGGGCAT+TGG | 0.452973 | 1.1:-16019243 | MS.gene33588:CDS |
| TTACATTGACCTTCTTGTCT+GGG | 0.454173 | 1.1:+16019122 | None:intergenic |
| TTGATCTTGCAAATGAAGTC+AGG | 0.482220 | 1.1:-16017941 | MS.gene33588:CDS |
| GGTTCTTTGATTTCAAAAGC+TGG | 0.489200 | 1.1:-16022328 | MS.gene33588:CDS |
| ACACAAATTTCTCCATCAGC+AGG | 0.508746 | 1.1:+16022107 | None:intergenic |
| ACCAATGCCCCGGAAATAGC+TGG | 0.509461 | 1.1:+16019242 | None:intergenic |
| GATCAATAACATGCTTGTCT+TGG | 0.509648 | 1.1:+16017958 | None:intergenic |
| ACAGTTCTACCAGGAAACTC+AGG | 0.518664 | 1.1:+16022140 | None:intergenic |
| AAGGTCAATGTAAATTATCT+AGG | 0.519474 | 1.1:-16019112 | MS.gene33588:CDS |
| GTCACATTGGAACCTGCTGA+TGG | 0.545101 | 1.1:-16022119 | MS.gene33588:CDS |
| TATAGCATCCCCAGACAAGA+AGG | 0.550775 | 1.1:-16019131 | MS.gene33588:CDS |
| TACTCTCTGTTAGGTCCTGT+GGG | 0.551232 | 1.1:+16018098 | None:intergenic |
| ATACTCTCTGTTAGGTCCTG+TGG | 0.551871 | 1.1:+16018097 | None:intergenic |
| TGCACAGTATCTGGGAGTGC+GGG | 0.556827 | 1.1:-16019432 | MS.gene33588:intron |
| TATCGACGTGTCTTCTACCA+AGG | 0.557154 | 1.1:-16022265 | MS.gene33588:intron |
| TACATTGACCTTCTTGTCTG+GGG | 0.558045 | 1.1:+16019123 | None:intergenic |
| GTAATTGCTGCACAGTATCT+GGG | 0.564368 | 1.1:-16019440 | MS.gene33588:intron |
| TCAGGTTCTACTGATCATAG+AGG | 0.565719 | 1.1:-16022167 | MS.gene33588:intron |
| TCCAATGTGACAGTTCTACC+AGG | 0.598973 | 1.1:+16022131 | None:intergenic |
| CTGCACAGTATCTGGGAGTG+CGG | 0.602691 | 1.1:-16019433 | MS.gene33588:intron |
| GTTCAAGCTGAAGGTCCCAC+AGG | 0.607799 | 1.1:-16018113 | MS.gene33588:CDS |
| CAGTTCTACCAGGAAACTCA+GGG | 0.609640 | 1.1:+16022141 | None:intergenic |
| AGGCAAATAGTTCAAGCTGA+AGG | 0.613298 | 1.1:-16018122 | MS.gene33588:CDS |
| TCCTGGTAGAACTGTCACAT+TGG | 0.616450 | 1.1:-16022132 | MS.gene33588:CDS |
| GGAGAAGCAATACGATCGGA+AGG | 0.618346 | 1.1:-16019411 | MS.gene33588:CDS |
| TTTCACTTACACCAATGCCC+CGG | 0.619835 | 1.1:+16019232 | None:intergenic |
| TGCGGGAGAAGCAATACGAT+CGG | 0.624661 | 1.1:-16019415 | MS.gene33588:CDS |
| CGTCTGTTGAAGAGATTGCA+AGG | 0.629037 | 1.1:-16019084 | MS.gene33588:intron |
| GCAATCTCTTCAACAGACGC+AGG | 0.640958 | 1.1:+16019088 | None:intergenic |
| TACAACGCCAGCTATTTCCG+GGG | 0.703197 | 1.1:-16019249 | MS.gene33588:CDS |
| AGTTCTACCAGGAAACTCAG+GGG | 0.786483 | 1.1:+16022142 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCTCTAAATTTTTTTTTTT+TGG | + | chr1.1:16018445-16018464 | None:intergenic | 10.0% |
| !!! | TCATTATTATATAATTGTTT+TGG | - | chr1.1:16021285-16021304 | MS.gene33588:intron | 10.0% |
| !!! | TCTCTAAATTTTTTTTTTTT+GGG | + | chr1.1:16018444-16018463 | None:intergenic | 10.0% |
| !!! | TTTTTAAAATCTATAACAAA+CGG | - | chr1.1:16018583-16018602 | MS.gene33588:intron | 10.0% |
| !! | ATTATCTATTTAAATGAGTT+TGG | - | chr1.1:16020348-16020367 | MS.gene33588:intron | 15.0% |
| !!! | TTACTTTTAATTCTATATGA+TGG | - | chr1.1:16020631-16020650 | MS.gene33588:intron | 15.0% |
| !! | AAACAAGAGAAAACAAATAT+GGG | - | chr1.1:16021684-16021703 | MS.gene33588:intron | 20.0% |
| !! | AATAATGAATACTCAAGTAA+AGG | + | chr1.1:16021273-16021292 | None:intergenic | 20.0% |
| !! | AATGCAATCAATATTTGAAA+TGG | - | chr1.1:16019648-16019667 | MS.gene33588:intron | 20.0% |
| !! | ATTGAATACAACTACATTTA+AGG | + | chr1.1:16018938-16018957 | None:intergenic | 20.0% |
| !! | CTATTACATTAACTTAACAA+AGG | + | chr1.1:16019362-16019381 | None:intergenic | 20.0% |
| !! | GAAGATAAAAAAGTTAAATG+TGG | + | chr1.1:16019519-16019538 | None:intergenic | 20.0% |
| !! | GTAAAACCATTATGAATAAA+AGG | - | chr1.1:16021923-16021942 | MS.gene33588:intron | 20.0% |
| !! | TAAACAAGAGAAAACAAATA+TGG | - | chr1.1:16021683-16021702 | MS.gene33588:intron | 20.0% |
| !! | TCAGCAAAAGTAATTAATTA+TGG | + | chr1.1:16018216-16018235 | None:intergenic | 20.0% |
| !! | TCATTCCTTATTATATTCTT+GGG | - | chr1.1:16020460-16020479 | MS.gene33588:intron | 20.0% |
| !! | TGATATATGACAAAACATTA+TGG | - | chr1.1:16020243-16020262 | MS.gene33588:intron | 20.0% |
| !! | TTCATTCCTTATTATATTCT+TGG | - | chr1.1:16020459-16020478 | MS.gene33588:intron | 20.0% |
| !!! | CATATTTTTACATCAAGTAT+TGG | - | chr1.1:16021989-16022008 | MS.gene33588:intron | 20.0% |
| !!! | CATTGAACTTAATTTCTTTT+TGG | - | chr1.1:16020515-16020534 | MS.gene33588:intron | 20.0% |
| !!! | GAAAGCATTATTGAAAATTT+AGG | + | chr1.1:16020442-16020461 | None:intergenic | 20.0% |
| !!! | GGAACTTGATAATTAAAAAT+TGG | + | chr1.1:16018195-16018214 | None:intergenic | 20.0% |
| !!! | TTAATTACTTTTGCTGATTA+AGG | - | chr1.1:16018219-16018238 | MS.gene33588:intron | 20.0% |
| !!! | TTCTATCTTTTTCATATTAC+AGG | - | chr1.1:16022127-16022146 | MS.gene33588:CDS | 20.0% |
| !!! | TTTTATAATCAGTAACAAAC+AGG | + | chr1.1:16018275-16018294 | None:intergenic | 20.0% |
| ! | AAAAACAACAAACACTAAGA+AGG | + | chr1.1:16019557-16019576 | None:intergenic | 25.0% |
| ! | AAAAGTTCAACCTTTATTAG+TGG | + | chr1.1:16020981-16021000 | None:intergenic | 25.0% |
| ! | AAGATAGAAATCAAACTCAA+AGG | + | chr1.1:16022116-16022135 | None:intergenic | 25.0% |
| ! | AAGGTCAATGTAAATTATCT+AGG | - | chr1.1:16021157-16021176 | MS.gene33588:intron | 25.0% |
| ! | ACGTAAAAAATGTAACAAAC+AGG | - | chr1.1:16018658-16018677 | MS.gene33588:intron | 25.0% |
| ! | AGATTTAGAGATTAATGAGT+TGG | - | chr1.1:16020211-16020230 | MS.gene33588:intron | 25.0% |
| ! | ATTAAGTACTTATCAAGAGT+GGG | - | chr1.1:16019397-16019416 | MS.gene33588:CDS | 25.0% |
| ! | CTCTTGAAAAAATTGTTGAT+TGG | - | chr1.1:16019284-16019303 | MS.gene33588:intron | 25.0% |
| ! | GAATCATAATACCTAGATAT+AGG | - | chr1.1:16021461-16021480 | MS.gene33588:intron | 25.0% |
| ! | GACTATAATTATAAGTCTCA+AGG | + | chr1.1:16020677-16020696 | None:intergenic | 25.0% |
| ! | GATAATCTATTGGACATATA+AGG | + | chr1.1:16019925-16019944 | None:intergenic | 25.0% |
| ! | GTTACTTATTCCACTAATAA+AGG | - | chr1.1:16020968-16020987 | MS.gene33588:intron | 25.0% |
| ! | TGTTACAAAGAATGTTATGA+TGG | + | chr1.1:16020497-16020516 | None:intergenic | 25.0% |
| ! | TTATCTTCGCTTAATTACAT+TGG | - | chr1.1:16019531-16019550 | MS.gene33588:intron | 25.0% |
| ! | TTGAATTTGAAAAGTAACCT+TGG | + | chr1.1:16018024-16018043 | None:intergenic | 25.0% |
| ! | TTTGATAAAAAATTGCTGTG+TGG | - | chr1.1:16019046-16019065 | MS.gene33588:intron | 25.0% |
| !! | AATAAGTTGAAAACAACTTG+TGG | - | chr1.1:16018822-16018841 | MS.gene33588:intron | 25.0% |
| !! | CATTTTGCAAAAGGTTAAAA+AGG | + | chr1.1:16019098-16019117 | None:intergenic | 25.0% |
| !! | CTTTTTAACCTTTTGCAAAA+TGG | - | chr1.1:16019096-16019115 | MS.gene33588:CDS | 25.0% |
| !! | GTTTCTTTCATAGTTTTTCT+AGG | + | chr1.1:16020182-16020201 | None:intergenic | 25.0% |
| !! | TATTTACTAGTCTCAATTTG+TGG | - | chr1.1:16021235-16021254 | MS.gene33588:intron | 25.0% |
| !! | TCAAACTTTTAACCAAGTTT+TGG | - | chr1.1:16019809-16019828 | MS.gene33588:intron | 25.0% |
| !! | TGCTAGTTTGACAAAAATAA+GGG | + | chr1.1:16021737-16021756 | None:intergenic | 25.0% |
| !! | TTTTGACAAGTATTAGCTAT+TGG | + | chr1.1:16020048-16020067 | None:intergenic | 25.0% |
| !!! | AAGGTTGAACTTTTTTTTTC+AGG | - | chr1.1:16020987-16021006 | MS.gene33588:intron | 25.0% |
| !!! | CACTTTTTTGTATTTTTGTG+TGG | - | chr1.1:16021504-16021523 | MS.gene33588:intron | 25.0% |
| !!! | CTTTTAATTCTATATGATGG+CGG | - | chr1.1:16020634-16020653 | MS.gene33588:intron | 25.0% |
| !!! | GGTTTTAGTTAGTCTTTTTA+AGG | - | chr1.1:16019418-16019437 | MS.gene33588:CDS | 25.0% |
| !!! | TATTCACATTGTTTTGAAGT+TGG | - | chr1.1:16019159-16019178 | MS.gene33588:intron | 25.0% |
| !!! | TTACATCAAGTATTGGTTAA+TGG | - | chr1.1:16021996-16022015 | MS.gene33588:intron | 25.0% |
| !!! | TTTAGAGATTTTTTTGTCCT+TGG | - | chr1.1:16018320-16018339 | MS.gene33588:intron | 25.0% |
| AAAGATCCTTACCTATTTGA+AGG | + | chr1.1:16022221-16022240 | None:intergenic | 30.0% | |
| AATGAACCTAAATTTCCACA+GGG | + | chr1.1:16022080-16022099 | None:intergenic | 30.0% | |
| ACATCAAAATCTTCACTGAT+GGG | - | chr1.1:16018076-16018095 | MS.gene33588:CDS | 30.0% | |
| ACTAAGTGAAATTGACTACA+TGG | + | chr1.1:16020280-16020299 | None:intergenic | 30.0% | |
| AGGTTGTTCAATTCAACAAA+TGG | + | chr1.1:16019342-16019361 | None:intergenic | 30.0% | |
| ATCTCTATGGGATAATCTAT+TGG | + | chr1.1:16019935-16019954 | None:intergenic | 30.0% | |
| ATGTAGTCAATTTCACTTAG+TGG | - | chr1.1:16020279-16020298 | MS.gene33588:intron | 30.0% | |
| CATAGCTAATTAGATCATTG+TGG | - | chr1.1:16021101-16021120 | MS.gene33588:intron | 30.0% | |
| CATTAAGTACTTATCAAGAG+TGG | - | chr1.1:16019396-16019415 | MS.gene33588:CDS | 30.0% | |
| GGATACCCAAGAATATAATA+AGG | + | chr1.1:16020468-16020487 | None:intergenic | 30.0% | |
| TAATGAACCTAAATTTCCAC+AGG | + | chr1.1:16022081-16022100 | None:intergenic | 30.0% | |
| TACATCAAAATCTTCACTGA+TGG | - | chr1.1:16018075-16018094 | MS.gene33588:CDS | 30.0% | |
| TCCAGAATAGCTTATGAAAA+CGG | + | chr1.1:16018791-16018810 | None:intergenic | 30.0% | |
| TCTTACGTCATTTCTACAAT+AGG | - | chr1.1:16020403-16020422 | MS.gene33588:intron | 30.0% | |
| TGGAACTTACTTCAAAAAGT+CGG | - | chr1.1:16019179-16019198 | MS.gene33588:intron | 30.0% | |
| TGTAGTCAATTTCACTTAGT+GGG | - | chr1.1:16020280-16020299 | MS.gene33588:intron | 30.0% | |
| TTAATGTAATAGCTGCTGTA+TGG | - | chr1.1:16019370-16019389 | MS.gene33588:intron | 30.0% | |
| ! | AAAATCATCTGAAACTCCAA+TGG | - | chr1.1:16021572-16021591 | MS.gene33588:intron | 30.0% |
| ! | AACTACATTTAAGGCTTGTT+TGG | + | chr1.1:16018929-16018948 | None:intergenic | 30.0% |
| ! | CACACACCTTTTATTCATAA+TGG | + | chr1.1:16021932-16021951 | None:intergenic | 30.0% |
| ! | GTATCTTTTCCTACTTGAAA+AGG | - | chr1.1:16022191-16022210 | MS.gene33588:intron | 30.0% |
| ! | GTGCTAGTTTGACAAAAATA+AGG | + | chr1.1:16021738-16021757 | None:intergenic | 30.0% |
| ! | TAAGCTAACCATTTTGCAAA+AGG | + | chr1.1:16019107-16019126 | None:intergenic | 30.0% |
| ! | TTTTCTTGGATACACATACT+AGG | + | chr1.1:16018972-16018991 | None:intergenic | 30.0% |
| !! | AGTTTCAGATGATTTTCAAG+TGG | + | chr1.1:16021568-16021587 | None:intergenic | 30.0% |
| !! | CTTTTAACCAAGTTTTGGTA+TGG | - | chr1.1:16019814-16019833 | MS.gene33588:intron | 30.0% |
| !! | TATTTTTGTCAAACTAGCAC+CGG | - | chr1.1:16021738-16021757 | MS.gene33588:intron | 30.0% |
| !!! | AATTTTTTCAAGAGCCTACA+CGG | + | chr1.1:16019278-16019297 | None:intergenic | 30.0% |
| !!! | CTTTTTCAAGGTGAATAAGT+GGG | + | chr1.1:16018394-16018413 | None:intergenic | 30.0% |
| !!! | GAAAGTCATACTAGTTTTCT+TGG | + | chr1.1:16018986-16019005 | None:intergenic | 30.0% |
| !!! | TTTTGTTTTGATCACCTCTT+AGG | - | chr1.1:16022285-16022304 | MS.gene33588:CDS | 30.0% |
| !!! | TTTTTCAAGGTGAATAAGTG+GGG | + | chr1.1:16018393-16018412 | None:intergenic | 30.0% |
| AAGGGTTCAAACTTTAGCAT+TGG | - | chr1.1:16019861-16019880 | MS.gene33588:intron | 35.0% | |
| ACCCAAGAAAGTTCAAACTT+GGG | - | chr1.1:16020001-16020020 | MS.gene33588:intron | 35.0% | |
| ACTAATTCATAAGCCTCCTA+AGG | + | chr1.1:16021320-16021339 | None:intergenic | 35.0% | |
| ACTTGATTGTCTTGACTGTA+GGG | - | chr1.1:16019244-16019263 | MS.gene33588:CDS | 35.0% | |
| AGACAAAATTGCCATCAATC+AGG | + | chr1.1:16021664-16021683 | None:intergenic | 35.0% | |
| AGGAAAAGATACTCTCTGTT+AGG | + | chr1.1:16022183-16022202 | None:intergenic | 35.0% | |
| ATTCTCACATTAGATGGCTT+TGG | + | chr1.1:16020384-16020403 | None:intergenic | 35.0% | |
| CAGTTACAATACATGAACCA+TGG | + | chr1.1:16022046-16022065 | None:intergenic | 35.0% | |
| CATTTGGCCTCAAAAAATCT+TGG | + | chr1.1:16020918-16020937 | None:intergenic | 35.0% | |
| CCACTTATTCACCTTGAAAA+AGG | - | chr1.1:16018392-16018411 | MS.gene33588:intron | 35.0% | |
| CGTAAGATTCTCACATTAGA+TGG | + | chr1.1:16020390-16020409 | None:intergenic | 35.0% | |
| GATCAATAACATGCTTGTCT+TGG | + | chr1.1:16022314-16022333 | None:intergenic | 35.0% | |
| GCAATATGGGTATTTGGTTA+CGG | - | chr1.1:16017920-16017939 | MS.gene33588:CDS | 35.0% | |
| GCTTAAGTAGAGGTAAAAGT+TGG | + | chr1.1:16020701-16020720 | None:intergenic | 35.0% | |
| GTCTCAAGGTTTAAGTATCT+TGG | + | chr1.1:16020663-16020682 | None:intergenic | 35.0% | |
| TACCCAAGAAAGTTCAAACT+TGG | - | chr1.1:16020000-16020019 | MS.gene33588:intron | 35.0% | |
| TACGTCATTTCTACAATAGG+TGG | - | chr1.1:16020406-16020425 | MS.gene33588:intron | 35.0% | |
| TACTTGATTGTCTTGACTGT+AGG | - | chr1.1:16019243-16019262 | MS.gene33588:CDS | 35.0% | |
| TAGCAGTGACTAATCTCTAT+GGG | + | chr1.1:16019947-16019966 | None:intergenic | 35.0% | |
| TCTTCAAAAGCAGAAATCCA+CGG | + | chr1.1:16021799-16021818 | None:intergenic | 35.0% | |
| TGACGTTTGATGAAGAAAGT+AGG | + | chr1.1:16020778-16020797 | None:intergenic | 35.0% | |
| TTACATTGACCTTCTTGTCT+GGG | + | chr1.1:16021150-16021169 | None:intergenic | 35.0% | |
| TTAGCAGTGACTAATCTCTA+TGG | + | chr1.1:16019948-16019967 | None:intergenic | 35.0% | |
| TTAGCTTAGAATGCGAGAAA+TGG | - | chr1.1:16019119-16019138 | MS.gene33588:CDS | 35.0% | |
| TTCAGCATGATCCTATATCT+AGG | + | chr1.1:16021475-16021494 | None:intergenic | 35.0% | |
| TTCATCAAACGTCACTATGT+CGG | - | chr1.1:16020784-16020803 | MS.gene33588:intron | 35.0% | |
| TTGATCTTGCAAATGAAGTC+AGG | - | chr1.1:16022328-16022347 | MS.gene33588:CDS | 35.0% | |
| TTTACATTGACCTTCTTGTC+TGG | + | chr1.1:16021151-16021170 | None:intergenic | 35.0% | |
| ! | GACAAGCATTGTTATATGCA+GGG | - | chr1.1:16018346-16018365 | MS.gene33588:intron | 35.0% |
| ! | GATACTTACTCTGTTTTGCA+AGG | - | chr1.1:16019670-16019689 | MS.gene33588:intron | 35.0% |
| ! | GGTTCTTTGATTTCAAAAGC+TGG | - | chr1.1:16017941-16017960 | MS.gene33588:CDS | 35.0% |
| !! | AGAATGTTATGATGGATGAG+TGG | + | chr1.1:16020489-16020508 | None:intergenic | 35.0% |
| !! | GATTCCTAGACTTTGAAATG+TGG | + | chr1.1:16021446-16021465 | None:intergenic | 35.0% |
| !! | GCTAGAATTCACCTTTTTCA+AGG | + | chr1.1:16018406-16018425 | None:intergenic | 35.0% |
| !! | TTGCTGATTAAGGTCTTGTT+TGG | - | chr1.1:16018229-16018248 | MS.gene33588:intron | 35.0% |
| !!! | AGATTTTTTGAGGCCAAATG+AGG | - | chr1.1:16020918-16020937 | MS.gene33588:intron | 35.0% |
| !!! | CCTTTTTCAAGGTGAATAAG+TGG | + | chr1.1:16018395-16018414 | None:intergenic | 35.0% |
| AACTACGATGAACGTCTTGT+TGG | - | chr1.1:16017968-16017987 | MS.gene33588:intron | 40.0% | |
| ACACAAATTTCTCCATCAGC+AGG | + | chr1.1:16018165-16018184 | None:intergenic | 40.0% | |
| ACGAAATGATGCACCTCATT+TGG | + | chr1.1:16020934-16020953 | None:intergenic | 40.0% | |
| ACGAGTTGTCCGATATCAAA+TGG | - | chr1.1:16019205-16019224 | MS.gene33588:intron | 40.0% | |
| ACTCCAATGGTGATTGATGT+CGG | - | chr1.1:16021585-16021604 | MS.gene33588:intron | 40.0% | |
| AGGCAAATAGTTCAAGCTGA+AGG | - | chr1.1:16022147-16022166 | MS.gene33588:CDS | 40.0% | |
| AGTCACACATGTGCTTATGT+CGG | - | chr1.1:16018880-16018899 | MS.gene33588:intron | 40.0% | |
| CATCAATCAGGTCACTATCT+CGG | + | chr1.1:16021652-16021671 | None:intergenic | 40.0% | |
| CCAAGAAAGTTCAAACTTGG+GGG | - | chr1.1:16020003-16020022 | MS.gene33588:intron | 40.0% | |
| CCCAAGAAAGTTCAAACTTG+GGG | - | chr1.1:16020002-16020021 | MS.gene33588:intron | 40.0% | |
| CCCCAAGTTTGAACTTTCTT+GGG | + | chr1.1:16020005-16020024 | None:intergenic | 40.0% | |
| CGATCTCAGCCATTTGATAT+CGG | + | chr1.1:16019217-16019236 | None:intergenic | 40.0% | |
| CTATCTCGGACATTACAACA+AGG | + | chr1.1:16021638-16021657 | None:intergenic | 40.0% | |
| GAAAAGGCTCTCCTTCAAAT+AGG | - | chr1.1:16022207-16022226 | MS.gene33588:intron | 40.0% | |
| GACACCTTAAACTAGGTCAA+GGG | - | chr1.1:16019843-16019862 | MS.gene33588:intron | 40.0% | |
| GATGCCACATTTCAAAGTCT+AGG | - | chr1.1:16021439-16021458 | MS.gene33588:intron | 40.0% | |
| GTAATTGCTGCACAGTATCT+GGG | - | chr1.1:16020829-16020848 | MS.gene33588:intron | 40.0% | |
| GTGTATGGTGAAACCTGATT+GGG | - | chr1.1:16019886-16019905 | MS.gene33588:intron | 40.0% | |
| TACATTGACCTTCTTGTCTG+GGG | + | chr1.1:16021149-16021168 | None:intergenic | 40.0% | |
| TCAGGTTCTACTGATCATAG+AGG | - | chr1.1:16018102-16018121 | MS.gene33588:CDS | 40.0% | |
| TCAGTCGAATCTCTATCACA+TGG | + | chr1.1:16020105-16020124 | None:intergenic | 40.0% | |
| TCGTGAACTTCTACTTCTGA+GGG | + | chr1.1:16021611-16021630 | None:intergenic | 40.0% | |
| TCTTGGATACACATACTAGG+AGG | + | chr1.1:16018969-16018988 | None:intergenic | 40.0% | |
| TGAACCCTTGACCTAGTTTA+AGG | + | chr1.1:16019850-16019869 | None:intergenic | 40.0% | |
| TGAATGCCCTGTGGAAATTT+AGG | - | chr1.1:16022071-16022090 | MS.gene33588:intron | 40.0% | |
| TGTAATTGCTGCACAGTATC+TGG | - | chr1.1:16020828-16020847 | MS.gene33588:intron | 40.0% | |
| TGTCTTGACTGTAGGGAATA+CGG | - | chr1.1:16019251-16019270 | MS.gene33588:CDS | 40.0% | |
| TTTCTTGGGTAACTATGTGC+AGG | + | chr1.1:16019991-16020010 | None:intergenic | 40.0% | |
| ! | AAAGGTGTGTGATCTCGTTA+TGG | - | chr1.1:16021941-16021960 | MS.gene33588:intron | 40.0% |
| ! | CGTGACTTTTGCTTAAGTAG+AGG | + | chr1.1:16020711-16020730 | None:intergenic | 40.0% |
| ! | CTGTTTTGCAAGGAGATAGT+GGG | - | chr1.1:16019680-16019699 | MS.gene33588:intron | 40.0% |
| ! | GATTAGTCACTGCTAAACTG+CGG | - | chr1.1:16019952-16019971 | MS.gene33588:intron | 40.0% |
| ! | GATTCGACTGAGTTTTACGT+TGG | - | chr1.1:16020114-16020133 | MS.gene33588:intron | 40.0% |
| ! | GGACAAGCATTGTTATATGC+AGG | - | chr1.1:16018345-16018364 | MS.gene33588:intron | 40.0% |
| ! | GGTTCAAACTTTAGCATTGG+TGG | - | chr1.1:16019864-16019883 | MS.gene33588:intron | 40.0% |
| ! | GTTTTCACTGTAAGTGTCAC+AGG | - | chr1.1:16020892-16020911 | MS.gene33588:intron | 40.0% |
| ! | TCTGTTTTGCAAGGAGATAG+TGG | - | chr1.1:16019679-16019698 | MS.gene33588:intron | 40.0% |
| ! | TGTTTTGCAAGGAGATAGTG+GGG | - | chr1.1:16019681-16019700 | MS.gene33588:intron | 40.0% |
| !! | ACTTTAGCATTGGTGGTGTA+TGG | - | chr1.1:16019871-16019890 | MS.gene33588:intron | 40.0% |
| !! | CCAAGTTTTGGTATGGAACT+CGG | - | chr1.1:16019821-16019840 | MS.gene33588:intron | 40.0% |
| !! | GCCGTTTTCATAAGCTATTC+TGG | - | chr1.1:16018787-16018806 | MS.gene33588:intron | 40.0% |
| !!! | ATCTTCACTGATGGGTTTTC+AGG | - | chr1.1:16018084-16018103 | MS.gene33588:CDS | 40.0% |
| !!! | GAGATTTTTTTGTCCTTGGC+AGG | - | chr1.1:16018324-16018343 | MS.gene33588:intron | 40.0% |
| !!! | TCACAGGCCAAGATTTTTTG+AGG | - | chr1.1:16020908-16020927 | MS.gene33588:intron | 40.0% |
| AACTGAGACGATGACCAAAC+CGG | + | chr1.1:16021760-16021779 | None:intergenic | 45.0% | |
| ACAGTTCTACCAGGAAACTC+AGG | + | chr1.1:16018132-16018151 | None:intergenic | 45.0% | |
| AGCATTGTTATATGCAGGGC+CGG | - | chr1.1:16018350-16018369 | MS.gene33588:intron | 45.0% | |
| AGTTCTACCAGGAAACTCAG+GGG | + | chr1.1:16018130-16018149 | None:intergenic | 45.0% | |
| ATACTCTCTGTTAGGTCCTG+TGG | + | chr1.1:16022175-16022194 | None:intergenic | 45.0% | |
| ATGGTGAAACCTGATTGGGA+GGG | - | chr1.1:16019890-16019909 | MS.gene33588:intron | 45.0% | |
| CAGTTCTACCAGGAAACTCA+GGG | + | chr1.1:16018131-16018150 | None:intergenic | 45.0% | |
| CCCCCAAGTTTGAACTTTCT+TGG | + | chr1.1:16020006-16020025 | None:intergenic | 45.0% | |
| CCGAGTTCCATACCAAAACT+TGG | + | chr1.1:16019824-16019843 | None:intergenic | 45.0% | |
| CGAGATAGTGACCTGATTGA+TGG | - | chr1.1:16021650-16021669 | MS.gene33588:intron | 45.0% | |
| CGTCTGTTGAAGAGATTGCA+AGG | - | chr1.1:16021185-16021204 | MS.gene33588:intron | 45.0% | |
| CTCGGACATTACAACAAGGA+GGG | + | chr1.1:16021634-16021653 | None:intergenic | 45.0% | |
| GAACTCGGACACCTTAAACT+AGG | - | chr1.1:16019836-16019855 | MS.gene33588:intron | 45.0% | |
| GGACACCTTAAACTAGGTCA+AGG | - | chr1.1:16019842-16019861 | MS.gene33588:intron | 45.0% | |
| GGCTCTCCTTCAAATAGGTA+AGG | - | chr1.1:16022212-16022231 | MS.gene33588:intron | 45.0% | |
| GGTGTATGGTGAAACCTGAT+TGG | - | chr1.1:16019885-16019904 | MS.gene33588:intron | 45.0% | |
| GTCGTGAACTTCTACTTCTG+AGG | + | chr1.1:16021612-16021631 | None:intergenic | 45.0% | |
| GTCTCAGTTGTGAGGACAAA+GGG | - | chr1.1:16021771-16021790 | MS.gene33588:intron | 45.0% | |
| GTGATCTCGTTATGGACACA+CGG | - | chr1.1:16021949-16021968 | MS.gene33588:intron | 45.0% | |
| TAACAATGCTTGTCCTGCCA+AGG | + | chr1.1:16018340-16018359 | None:intergenic | 45.0% | |
| TACTCTCTGTTAGGTCCTGT+GGG | + | chr1.1:16022174-16022193 | None:intergenic | 45.0% | |
| TATAGCATCCCCAGACAAGA+AGG | - | chr1.1:16021138-16021157 | MS.gene33588:intron | 45.0% | |
| TATCGACGTGTCTTCTACCA+AGG | - | chr1.1:16018004-16018023 | MS.gene33588:intron | 45.0% | |
| TATGGTGAAACCTGATTGGG+AGG | - | chr1.1:16019889-16019908 | MS.gene33588:intron | 45.0% | |
| TCCAATGTGACAGTTCTACC+AGG | + | chr1.1:16018141-16018160 | None:intergenic | 45.0% | |
| TCCTGGTAGAACTGTCACAT+TGG | - | chr1.1:16018137-16018156 | MS.gene33588:intron | 45.0% | |
| TCTCAGTTGTGAGGACAAAG+GGG | - | chr1.1:16021772-16021791 | MS.gene33588:intron | 45.0% | |
| TCTCGGACATTACAACAAGG+AGG | + | chr1.1:16021635-16021654 | None:intergenic | 45.0% | |
| TGAACCATGGCAAGTTCTAC+TGG | + | chr1.1:16022033-16022052 | None:intergenic | 45.0% | |
| TGGGTAACTATGTGCAGGAA+AGG | + | chr1.1:16019986-16020005 | None:intergenic | 45.0% | |
| TTCATAAGCCTCCTAAGGCA+AGG | + | chr1.1:16021315-16021334 | None:intergenic | 45.0% | |
| TTTCACTTACACCAATGCCC+CGG | + | chr1.1:16021040-16021059 | None:intergenic | 45.0% | |
| !! | ACTGTGTTTTGAATGCCCTG+TGG | - | chr1.1:16022062-16022081 | MS.gene33588:intron | 45.0% |
| !! | TTGTCAAACTAGCACCGGTT+TGG | - | chr1.1:16021743-16021762 | MS.gene33588:intron | 45.0% |
| !!! | GAAGGAGAGCCTTTTCAAGT+AGG | + | chr1.1:16022203-16022222 | None:intergenic | 45.0% |
| !!! | GATTTTCAAGTGGCGATCCA+AGG | + | chr1.1:16021558-16021577 | None:intergenic | 45.0% |
| !!! | GTTTTGGAGATCCTTGCCTT+AGG | - | chr1.1:16021301-16021320 | MS.gene33588:intron | 45.0% |
| ACCATGGCAAGTTCTACTGG+CGG | + | chr1.1:16022030-16022049 | None:intergenic | 50.0% | |
| ACCTCTAGTGGTCGCATACT+AGG | + | chr1.1:16020150-16020169 | None:intergenic | 50.0% | |
| AGTATGCGACCACTAGAGGT+AGG | - | chr1.1:16020150-16020169 | MS.gene33588:intron | 50.0% | |
| CATTGTTATATGCAGGGCCG+GGG | - | chr1.1:16018352-16018371 | MS.gene33588:intron | 50.0% | |
| CGTCTCAGTTGTGAGGACAA+AGG | - | chr1.1:16021770-16021789 | MS.gene33588:intron | 50.0% | |
| GCAATCTCTTCAACAGACGC+AGG | + | chr1.1:16021184-16021203 | None:intergenic | 50.0% | |
| GCATTGTTATATGCAGGGCC+GGG | - | chr1.1:16018351-16018370 | MS.gene33588:intron | 50.0% | |
| GCTTGTCTTGGCATCCTAAG+AGG | + | chr1.1:16022302-16022321 | None:intergenic | 50.0% | |
| GGAGAAGCAATACGATCGGA+AGG | - | chr1.1:16020858-16020877 | MS.gene33588:intron | 50.0% | |
| GTATGCGACCACTAGAGGTA+GGG | - | chr1.1:16020151-16020170 | MS.gene33588:intron | 50.0% | |
| GTCACATTGGAACCTGCTGA+TGG | - | chr1.1:16018150-16018169 | MS.gene33588:intron | 50.0% | |
| TAGTCACTGCTAAACTGCGG+TGG | - | chr1.1:16019955-16019974 | MS.gene33588:intron | 50.0% | |
| TATGCGACCACTAGAGGTAG+GGG | - | chr1.1:16020152-16020171 | MS.gene33588:intron | 50.0% | |
| TGCGGGAGAAGCAATACGAT+CGG | - | chr1.1:16020854-16020873 | MS.gene33588:intron | 50.0% | |
| TGGTCATCGTCTCAGTTGTG+AGG | - | chr1.1:16021763-16021782 | MS.gene33588:intron | 50.0% | |
| TGGTGAAACCTGATTGGGAG+GGG | - | chr1.1:16019891-16019910 | MS.gene33588:intron | 50.0% | |
| TGGTTCACGAGCAAGTTCCA+CGG | - | chr1.1:16021524-16021543 | MS.gene33588:intron | 50.0% | |
| TTGGAGATCCTTGCCTTAGG+AGG | - | chr1.1:16021304-16021323 | MS.gene33588:intron | 50.0% | |
| ! | AGGTGAATAAGTGGGGTGTC+CGG | + | chr1.1:16018386-16018405 | None:intergenic | 50.0% |
| ! | CTACAACGCCAGCTATTTCC+GGG | - | chr1.1:16021019-16021038 | MS.gene33588:intron | 50.0% |
| ! | GCTACAACGCCAGCTATTTC+CGG | - | chr1.1:16021018-16021037 | MS.gene33588:intron | 50.0% |
| ! | TACAACGCCAGCTATTTCCG+GGG | - | chr1.1:16021020-16021039 | MS.gene33588:intron | 50.0% |
| ACCAATGCCCCGGAAATAGC+TGG | + | chr1.1:16021030-16021049 | None:intergenic | 55.0% | |
| AGAGGAACCCCTGAGTTTCC+TGG | - | chr1.1:16018120-16018139 | MS.gene33588:CDS | 55.0% | |
| ATGCGACCACTAGAGGTAGG+GGG | - | chr1.1:16020153-16020172 | MS.gene33588:intron | 55.0% | |
| CTGCACAGTATCTGGGAGTG+CGG | - | chr1.1:16020836-16020855 | MS.gene33588:intron | 55.0% | |
| GATCCAAGGTGATACTGCCG+TGG | + | chr1.1:16021544-16021563 | None:intergenic | 55.0% | |
| GCCTAGTATGCGACCACTAG+AGG | - | chr1.1:16020146-16020165 | MS.gene33588:intron | 55.0% | |
| GGGCCGACATCAATCACCAT+TGG | + | chr1.1:16021591-16021610 | None:intergenic | 55.0% | |
| GTAGGGAATACGGACCGTGT+AGG | - | chr1.1:16019261-16019280 | MS.gene33588:CDS | 55.0% | |
| GTTCAAGCTGAAGGTCCCAC+AGG | - | chr1.1:16022156-16022175 | MS.gene33588:CDS | 55.0% | |
| GTTCCACGGCAGTATCACCT+TGG | - | chr1.1:16021538-16021557 | MS.gene33588:intron | 55.0% | |
| TCCGCCAGTAGAACTTGCCA+TGG | - | chr1.1:16022026-16022045 | MS.gene33588:intron | 55.0% | |
| TGAGTTCTCCCCTCCCAATC+AGG | + | chr1.1:16019902-16019921 | None:intergenic | 55.0% | |
| TGGCAAGTTCTACTGGCGGA+TGG | + | chr1.1:16022026-16022045 | None:intergenic | 55.0% | |
| ! | GGTGAATAAGTGGGGTGTCC+GGG | + | chr1.1:16018385-16018404 | None:intergenic | 55.0% |
| ! | TGCACAGTATCTGGGAGTGC+GGG | - | chr1.1:16020837-16020856 | MS.gene33588:intron | 55.0% |
| AGGTCTCCCCCTACCTCTAG+TGG | + | chr1.1:16020162-16020181 | None:intergenic | 60.0% | |
| TGTGAGGACAAAGGGGACCG+TGG | - | chr1.1:16021779-16021798 | MS.gene33588:intron | 60.0% | |
| ! | GCCAGCTATTTCCGGGGCAT+TGG | - | chr1.1:16021026-16021045 | MS.gene33588:intron | 60.0% |
| GGTGTCCGGGATTCGAACCC+CGG | + | chr1.1:16018372-16018391 | None:intergenic | 65.0% | |
| CAGGGCCGGGGTTCGAATCC+CGG | - | chr1.1:16018364-16018383 | MS.gene33588:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 16017917 | 16022374 | 16017917 | ID=MS.gene33588 |
| chr1.1 | mRNA | 16017917 | 16022374 | 16017917 | ID=MS.gene33588.t1;Parent=MS.gene33588 |
| chr1.1 | exon | 16022266 | 16022374 | 16022266 | ID=MS.gene33588.t1.exon1;Parent=MS.gene33588.t1 |
| chr1.1 | CDS | 16022266 | 16022374 | 16022266 | ID=cds.MS.gene33588.t1;Parent=MS.gene33588.t1 |
| chr1.1 | exon | 16022109 | 16022185 | 16022109 | ID=MS.gene33588.t1.exon2;Parent=MS.gene33588.t1 |
| chr1.1 | CDS | 16022109 | 16022185 | 16022109 | ID=cds.MS.gene33588.t1;Parent=MS.gene33588.t1 |
| chr1.1 | exon | 16020539 | 16020592 | 16020539 | ID=MS.gene33588.t1.exon3;Parent=MS.gene33588.t1 |
| chr1.1 | CDS | 16020539 | 16020592 | 16020539 | ID=cds.MS.gene33588.t1;Parent=MS.gene33588.t1 |
| chr1.1 | exon | 16019391 | 16019447 | 16019391 | ID=MS.gene33588.t1.exon4;Parent=MS.gene33588.t1 |
| chr1.1 | CDS | 16019391 | 16019447 | 16019391 | ID=cds.MS.gene33588.t1;Parent=MS.gene33588.t1 |
| chr1.1 | exon | 16019242 | 16019282 | 16019242 | ID=MS.gene33588.t1.exon5;Parent=MS.gene33588.t1 |
| chr1.1 | CDS | 16019242 | 16019282 | 16019242 | ID=cds.MS.gene33588.t1;Parent=MS.gene33588.t1 |
| chr1.1 | exon | 16019085 | 16019156 | 16019085 | ID=MS.gene33588.t1.exon6;Parent=MS.gene33588.t1 |
| chr1.1 | CDS | 16019085 | 16019156 | 16019085 | ID=cds.MS.gene33588.t1;Parent=MS.gene33588.t1 |
| chr1.1 | exon | 16018063 | 16018142 | 16018063 | ID=MS.gene33588.t1.exon7;Parent=MS.gene33588.t1 |
| chr1.1 | CDS | 16018063 | 16018142 | 16018063 | ID=cds.MS.gene33588.t1;Parent=MS.gene33588.t1 |
| chr1.1 | exon | 16017917 | 16017984 | 16017917 | ID=MS.gene33588.t1.exon8;Parent=MS.gene33588.t1 |
| chr1.1 | CDS | 16017917 | 16017984 | 16017917 | ID=cds.MS.gene33588.t1;Parent=MS.gene33588.t1 |
| Gene Sequence |
| Protein sequence |
