Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63001.t1 | XP_003589593.1 | 99.5 | 185 | 1 | 0 | 1 | 185 | 1 | 185 | 3.00E-100 | 374.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63001.t1 | Q84QC1 | 69.7 | 185 | 56 | 0 | 1 | 185 | 1 | 185 | 1.1e-71 | 270.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63001.t1 | G7I8G3 | 99.5 | 185 | 1 | 0 | 1 | 185 | 1 | 185 | 2.2e-100 | 374.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049609 | MS.gene63001 | 0.812959 | 3.26E-51 | -1.69E-46 |
MS.gene050670 | MS.gene63001 | 0.817433 | 3.31E-52 | -1.69E-46 |
MS.gene05105 | MS.gene63001 | 0.841431 | 4.77E-58 | -1.69E-46 |
MS.gene051525 | MS.gene63001 | 0.83097 | 2.18E-55 | -1.69E-46 |
MS.gene052253 | MS.gene63001 | 0.818456 | 1.94E-52 | -1.69E-46 |
MS.gene052421 | MS.gene63001 | 0.82391 | 1.07E-53 | -1.69E-46 |
MS.gene052481 | MS.gene63001 | 0.816379 | 5.70E-52 | -1.69E-46 |
MS.gene052505 | MS.gene63001 | 0.803149 | 4.00E-49 | -1.69E-46 |
MS.gene052982 | MS.gene63001 | 0.857063 | 2.11E-62 | -1.69E-46 |
MS.gene053209 | MS.gene63001 | 0.822434 | 2.37E-53 | -1.69E-46 |
MS.gene05505 | MS.gene63001 | 0.809485 | 1.85E-50 | -1.69E-46 |
MS.gene055116 | MS.gene63001 | 0.807126 | 5.88E-50 | -1.69E-46 |
MS.gene055722 | MS.gene63001 | 0.805109 | 1.56E-49 | -1.69E-46 |
MS.gene056796 | MS.gene63001 | 0.805909 | 1.06E-49 | -1.69E-46 |
MS.gene057823 | MS.gene63001 | 0.800272 | 1.56E-48 | -1.69E-46 |
MS.gene058376 | MS.gene63001 | 0.816282 | 5.99E-52 | -1.69E-46 |
MS.gene058444 | MS.gene63001 | 0.825418 | 4.74E-54 | -1.69E-46 |
MS.gene058700 | MS.gene63001 | 0.82133 | 4.28E-53 | -1.69E-46 |
MS.gene059688 | MS.gene63001 | 0.815176 | 1.06E-51 | -1.69E-46 |
MS.gene059692 | MS.gene63001 | 0.814151 | 1.78E-51 | -1.69E-46 |
MS.gene059695 | MS.gene63001 | 0.815161 | 1.07E-51 | -1.69E-46 |
MS.gene060837 | MS.gene63001 | 0.840932 | 6.46E-58 | -1.69E-46 |
MS.gene061154 | MS.gene63001 | 0.817208 | 3.71E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene073038 | MS.gene63001 | PPI |
MS.gene40358 | MS.gene63001 | PPI |
MS.gene014703 | MS.gene63001 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63001.t1 | MTR_1g030430 | 99.459 | 185 | 1 | 0 | 1 | 185 | 1 | 185 | 1.22e-136 | 379 |
MS.gene63001.t1 | MTR_3g109250 | 54.444 | 180 | 81 | 1 | 1 | 179 | 1 | 180 | 4.00e-69 | 209 |
MS.gene63001.t1 | MTR_1g009210 | 54.098 | 183 | 82 | 2 | 1 | 182 | 1 | 182 | 2.66e-67 | 204 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63001.t1 | AT1G44790 | 69.730 | 185 | 56 | 0 | 1 | 185 | 1 | 185 | 1.29e-95 | 276 |
MS.gene63001.t1 | AT5G26220 | 54.396 | 182 | 82 | 1 | 1 | 181 | 1 | 182 | 4.97e-69 | 209 |
MS.gene63001.t1 | AT4G31290 | 52.717 | 184 | 86 | 1 | 1 | 183 | 1 | 184 | 3.08e-67 | 205 |
MS.gene63001.t1 | AT5G26220 | 52.874 | 174 | 81 | 1 | 1 | 173 | 1 | 174 | 5.32e-64 | 195 |
Find 43 sgRNAs with CRISPR-Local
Find 251 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACATGGCAATATGGGTATT+TGG | 0.235187 | 1.3:-16329598 | MS.gene63001:CDS |
CCACCACAAACATGGCAATA+TGG | 0.253544 | 1.3:-16329606 | None:intergenic |
GCTACAACGCCAGCTATTTC+CGG | 0.314593 | 1.3:-16326451 | MS.gene63001:CDS |
GAAAAGGCTCTCCTTCAAAT+AGG | 0.367256 | 1.3:-16325262 | MS.gene63001:intron |
TTTACATTGACCTTCTTGTC+TGG | 0.370032 | 1.3:+16326321 | None:intergenic |
AGAGGAACCCCTGAGTTTCC+TGG | 0.391045 | 1.3:-16329392 | MS.gene63001:CDS |
CACCACAAACATGGCAATAT+GGG | 0.400036 | 1.3:-16329605 | None:intergenic |
CTACAACGCCAGCTATTTCC+GGG | 0.409648 | 1.3:-16326450 | MS.gene63001:CDS |
AACTACGATGAACGTCTTGT+TGG | 0.410652 | 1.3:-16329544 | MS.gene63001:CDS |
AAAGATCCTTACCTATTTGA+AGG | 0.411187 | 1.3:+16325251 | None:intergenic |
AGGAAAAGATACTCTCTGTT+AGG | 0.426813 | 1.3:+16325289 | None:intergenic |
GCAATATGGGTATTTGGTTA+CGG | 0.427063 | 1.3:-16329592 | MS.gene63001:CDS |
GCCAGCTATTTCCGGGGCAT+TGG | 0.452973 | 1.3:-16326443 | MS.gene63001:CDS |
TTACATTGACCTTCTTGTCT+GGG | 0.454173 | 1.3:+16326322 | None:intergenic |
TTGATCTTGCAAATGAAGTC+AGG | 0.482220 | 1.3:-16325141 | MS.gene63001:CDS |
GGTTCTTTGATTTCAAAAGC+TGG | 0.489200 | 1.3:-16329571 | MS.gene63001:CDS |
ACAGTTCTGCCAGGAAACTC+AGG | 0.492649 | 1.3:+16329383 | None:intergenic |
ACACAAATTTCTCCATCAGC+AGG | 0.508746 | 1.3:+16329350 | None:intergenic |
ACCAATGCCCCGGAAATAGC+TGG | 0.509461 | 1.3:+16326442 | None:intergenic |
GATCAATAACATGCTTGTCT+TGG | 0.509648 | 1.3:+16325158 | None:intergenic |
AAGGTCAATGTAAATTATCT+AGG | 0.519474 | 1.3:-16326312 | MS.gene63001:CDS |
GTCACATTGGAACCTGCTGA+TGG | 0.545101 | 1.3:-16329362 | MS.gene63001:CDS |
TATAGCATCCCCAGACAAGA+AGG | 0.550775 | 1.3:-16326331 | MS.gene63001:CDS |
TACTCTCTGTTAGGTCCTGT+GGG | 0.551232 | 1.3:+16325298 | None:intergenic |
ATACTCTCTGTTAGGTCCTG+TGG | 0.551871 | 1.3:+16325297 | None:intergenic |
TCCAATGTGACAGTTCTGCC+AGG | 0.555237 | 1.3:+16329374 | None:intergenic |
TGCACAGTATCTGGGAGTGC+GGG | 0.556827 | 1.3:-16326632 | MS.gene63001:intron |
TATCGACGTGTCTTCTACCA+AGG | 0.557154 | 1.3:-16329508 | MS.gene63001:intron |
TACATTGACCTTCTTGTCTG+GGG | 0.558045 | 1.3:+16326323 | None:intergenic |
GTAATTGCTGCACAGTATCT+GGG | 0.564368 | 1.3:-16326640 | MS.gene63001:intron |
TCCTGGCAGAACTGTCACAT+TGG | 0.589373 | 1.3:-16329375 | MS.gene63001:CDS |
CAGTTCTGCCAGGAAACTCA+GGG | 0.592484 | 1.3:+16329384 | None:intergenic |
TTAGGTTCTACTGATCATAG+AGG | 0.594149 | 1.3:-16329410 | MS.gene63001:intron |
CTGCACAGTATCTGGGAGTG+CGG | 0.602691 | 1.3:-16326633 | MS.gene63001:intron |
GTTCAAGCTGAAGGTCCCAC+AGG | 0.607799 | 1.3:-16325313 | MS.gene63001:CDS |
AGGCAAATAGTTCAAGCTGA+AGG | 0.613298 | 1.3:-16325322 | MS.gene63001:CDS |
GGAGAAGCAATACGATCGGA+AGG | 0.618346 | 1.3:-16326611 | MS.gene63001:CDS |
TTTCACTTACACCAATGCCC+CGG | 0.619835 | 1.3:+16326432 | None:intergenic |
TGCGGGAGAAGCAATACGAT+CGG | 0.624661 | 1.3:-16326615 | MS.gene63001:CDS |
CGTCTGTTGAAGAGATTGCA+AGG | 0.629037 | 1.3:-16326284 | MS.gene63001:intron |
GCAATCTCTTCAACAGACGC+AGG | 0.640958 | 1.3:+16326288 | None:intergenic |
TACAACGCCAGCTATTTCCG+GGG | 0.703197 | 1.3:-16326449 | MS.gene63001:CDS |
AGTTCTGCCAGGAAACTCAG+GGG | 0.773146 | 1.3:+16329385 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATCTCTAAATTTTTTTTTTT+TGG | + | chr1.3:16325648-16325667 | None:intergenic | 10.0% |
!!! | TCATTATTATATAATTGTTT+TGG | - | chr1.3:16328528-16328547 | MS.gene63001:intron | 10.0% |
!!! | TTTTTAAAATCTATAACAAA+CGG | - | chr1.3:16325787-16325806 | MS.gene63001:intron | 10.0% |
!! | ATTATCTATTTAAATGAGTT+AGG | - | chr1.3:16327563-16327582 | MS.gene63001:intron | 15.0% |
!! | TTATTACATTAACTTAACAA+AGG | + | chr1.3:16326546-16326565 | None:intergenic | 15.0% |
!!! | TTACTTTTAATTCTATATGA+TGG | - | chr1.3:16327874-16327893 | MS.gene63001:intron | 15.0% |
!! | AAACAAGAGAAAACAAATAT+GGG | - | chr1.3:16328927-16328946 | MS.gene63001:intron | 20.0% |
!! | AATAATGAATACTCAAGTAA+AGG | + | chr1.3:16328516-16328535 | None:intergenic | 20.0% |
!! | AATGCAATCAATATTTGAAA+TGG | - | chr1.3:16326831-16326850 | MS.gene63001:intron | 20.0% |
!! | ATTAAGTACTTATCAAGATT+GGG | - | chr1.3:16326581-16326600 | MS.gene63001:intron | 20.0% |
!! | ATTGAATACAACTACATTTA+AGG | + | chr1.3:16326149-16326168 | None:intergenic | 20.0% |
!! | CATGATAAGTTAAATCTAAA+AGG | - | chr1.3:16328611-16328630 | MS.gene63001:intron | 20.0% |
!! | CTTATTATATTGTCTTTCTT+GGG | - | chr1.3:16327681-16327700 | MS.gene63001:intron | 20.0% |
!! | GTAAAACCATTATGAATAAA+AGG | - | chr1.3:16329166-16329185 | MS.gene63001:intron | 20.0% |
!! | TAAACAAGAGAAAACAAATA+TGG | - | chr1.3:16328926-16328945 | MS.gene63001:intron | 20.0% |
!! | TCAGCAAAAGTAATTAATTA+TGG | + | chr1.3:16325416-16325435 | None:intergenic | 20.0% |
!! | TGATATATGACAAAACATTA+TGG | - | chr1.3:16327458-16327477 | MS.gene63001:intron | 20.0% |
!!! | AAAAGGAAATTTTGTTATCT+TGG | - | chr1.3:16327268-16327287 | MS.gene63001:intron | 20.0% |
!!! | CATATTTTTACATCAAGTAT+TGG | - | chr1.3:16329232-16329251 | MS.gene63001:intron | 20.0% |
!!! | GAAAGCATTATTGAAAATTT+AGG | + | chr1.3:16327657-16327676 | None:intergenic | 20.0% |
!!! | GGAACTTGATAATTAAAAAT+TGG | + | chr1.3:16325395-16325414 | None:intergenic | 20.0% |
!!! | TTAATTACTTTTGCTGATTA+AGG | - | chr1.3:16325419-16325438 | MS.gene63001:intron | 20.0% |
!!! | TTCTATCTTTTTCATATTAC+AGG | - | chr1.3:16329370-16329389 | MS.gene63001:CDS | 20.0% |
!!! | TTTTATAATCAGTAACAAAC+AGG | + | chr1.3:16325475-16325494 | None:intergenic | 20.0% |
! | AAAAACAACAAACACTAAGA+AGG | + | chr1.3:16326740-16326759 | None:intergenic | 25.0% |
! | AAAAGTTCAACCTTTATTAG+TGG | + | chr1.3:16328224-16328243 | None:intergenic | 25.0% |
! | AAGATAGAAATCAAACTCAA+AGG | + | chr1.3:16329359-16329378 | None:intergenic | 25.0% |
! | AAGGTCAATGTAAATTATCT+AGG | - | chr1.3:16328400-16328419 | MS.gene63001:intron | 25.0% |
! | ACGTAAAAAATGTAACAAAC+AGG | - | chr1.3:16325865-16325884 | MS.gene63001:intron | 25.0% |
! | AGATTTAGAGATTAATGAGT+TGG | - | chr1.3:16327426-16327445 | MS.gene63001:intron | 25.0% |
! | CACATATTACTTCAAAAAGT+CGG | - | chr1.3:16326366-16326385 | MS.gene63001:intron | 25.0% |
! | CATTAAGTACTTATCAAGAT+TGG | - | chr1.3:16326580-16326599 | MS.gene63001:intron | 25.0% |
! | CCAAGAAAGACAATATAATA+AGG | + | chr1.3:16327683-16327702 | None:intergenic | 25.0% |
! | CCTTATTATATTGTCTTTCT+TGG | - | chr1.3:16327680-16327699 | MS.gene63001:intron | 25.0% |
! | CGAAGATAAAAAGTTAAATG+TGG | + | chr1.3:16326703-16326722 | None:intergenic | 25.0% |
! | CTCTTGAAAAAATTGTTGAT+TGG | - | chr1.3:16326471-16326490 | MS.gene63001:intron | 25.0% |
! | GAATCATAATACCTAGATAT+AGG | - | chr1.3:16328704-16328723 | MS.gene63001:intron | 25.0% |
! | GACTATAATTATAAGTCTCA+AGG | + | chr1.3:16327920-16327939 | None:intergenic | 25.0% |
! | GATAATCTATTGGACATATA+AGG | + | chr1.3:16327108-16327127 | None:intergenic | 25.0% |
! | GTTACTTATTCCACTAATAA+AGG | - | chr1.3:16328211-16328230 | MS.gene63001:intron | 25.0% |
! | TGTTACAAAGAATGTTATGA+TGG | + | chr1.3:16327718-16327737 | None:intergenic | 25.0% |
! | TTAATGTAATAACTGCTGTA+TGG | - | chr1.3:16326554-16326573 | MS.gene63001:intron | 25.0% |
! | TTATCTTCGCTTAATTACAT+TGG | - | chr1.3:16326714-16326733 | MS.gene63001:intron | 25.0% |
! | TTGAATTTGAAAAGTAACCT+TGG | + | chr1.3:16325224-16325243 | None:intergenic | 25.0% |
! | TTTGATAAAAAATTGCTGTG+TGG | - | chr1.3:16326257-16326276 | MS.gene63001:intron | 25.0% |
!! | AATAAGTTGAAAACAACTTG+TGG | - | chr1.3:16326033-16326052 | MS.gene63001:intron | 25.0% |
!! | CATTTTGCAAAAGGTTAAAA+AGG | + | chr1.3:16326309-16326328 | None:intergenic | 25.0% |
!! | CTTTTTAACCTTTTGCAAAA+TGG | - | chr1.3:16326307-16326326 | MS.gene63001:CDS | 25.0% |
!! | GTTTCTTTCATAGTTTTTCT+AGG | + | chr1.3:16327397-16327416 | None:intergenic | 25.0% |
!! | TATTTACTAGTCTCAATTTG+TGG | - | chr1.3:16328478-16328497 | MS.gene63001:intron | 25.0% |
!! | TCAAACTTTTAACCAAGTTT+TGG | - | chr1.3:16326992-16327011 | MS.gene63001:intron | 25.0% |
!! | TGCTAGTTTGACAAAAATAA+GGG | + | chr1.3:16328980-16328999 | None:intergenic | 25.0% |
!! | TTTTGACAAGTATTAGCTAT+TGG | + | chr1.3:16327231-16327250 | None:intergenic | 25.0% |
!!! | AAGGTTGAACTTTTTTTTTC+AGG | - | chr1.3:16328230-16328249 | MS.gene63001:intron | 25.0% |
!!! | CACTTTTTTGTATTTTTGTG+TGG | - | chr1.3:16328747-16328766 | MS.gene63001:intron | 25.0% |
!!! | CTTTTAATTCTATATGATGG+CGG | - | chr1.3:16327877-16327896 | MS.gene63001:intron | 25.0% |
!!! | GGTTTTAGTTAGTCTTTTTA+AGG | - | chr1.3:16326602-16326621 | MS.gene63001:CDS | 25.0% |
!!! | TTACATCAAGTATTGGTTAA+TGG | - | chr1.3:16329239-16329258 | MS.gene63001:intron | 25.0% |
!!! | TTTAGAGATTTTTTTGTCCT+TGG | - | chr1.3:16325524-16325543 | MS.gene63001:intron | 25.0% |
AAAGATCCTTACCTATTTGA+AGG | + | chr1.3:16329464-16329483 | None:intergenic | 30.0% | |
AATGAACCTAAATTTCCACA+GGG | + | chr1.3:16329323-16329342 | None:intergenic | 30.0% | |
ACATCAAAATCTTCACTGAT+GGG | - | chr1.3:16325276-16325295 | MS.gene63001:CDS | 30.0% | |
ACTAAGTGAAATTGACTACA+TGG | + | chr1.3:16327495-16327514 | None:intergenic | 30.0% | |
ATCTCTATGGGATAATCTAT+TGG | + | chr1.3:16327118-16327137 | None:intergenic | 30.0% | |
ATGTAGTCAATTTCACTTAG+TGG | - | chr1.3:16327494-16327513 | MS.gene63001:intron | 30.0% | |
CAAAGGTTCAATTCAACAAA+TGG | + | chr1.3:16326529-16326548 | None:intergenic | 30.0% | |
CATAGCTAATTAGATCATTG+TGG | - | chr1.3:16328344-16328363 | MS.gene63001:intron | 30.0% | |
TAATGAACCTAAATTTCCAC+AGG | + | chr1.3:16329324-16329343 | None:intergenic | 30.0% | |
TACATCAAAATCTTCACTGA+TGG | - | chr1.3:16325275-16325294 | MS.gene63001:CDS | 30.0% | |
TAGCAATGACTAATCTCTAT+GGG | + | chr1.3:16327130-16327149 | None:intergenic | 30.0% | |
TCTTTCGTCATTTCTACAAT+AGG | - | chr1.3:16327618-16327637 | MS.gene63001:intron | 30.0% | |
TGAAATTCTCAGCATACAAA+AGG | - | chr1.3:16327251-16327270 | MS.gene63001:intron | 30.0% | |
TGTAGTCAATTTCACTTAGT+GGG | - | chr1.3:16327495-16327514 | MS.gene63001:intron | 30.0% | |
TTAGCAATGACTAATCTCTA+TGG | + | chr1.3:16327131-16327150 | None:intergenic | 30.0% | |
! | AAAATCATCTGAAACTCCAA+TGG | - | chr1.3:16328815-16328834 | MS.gene63001:intron | 30.0% |
! | AACTACATTTAAGGCTTGTT+TGG | + | chr1.3:16326140-16326159 | None:intergenic | 30.0% |
! | CACACACCTTTTATTCATAA+TGG | + | chr1.3:16329175-16329194 | None:intergenic | 30.0% |
! | GTATCTTTTCCTACTTGAAA+AGG | - | chr1.3:16329434-16329453 | MS.gene63001:intron | 30.0% |
! | GTGCTAGTTTGACAAAAATA+AGG | + | chr1.3:16328981-16329000 | None:intergenic | 30.0% |
! | TAAGCTAACCATTTTGCAAA+AGG | + | chr1.3:16326318-16326337 | None:intergenic | 30.0% |
! | TCAAGTTGTTTATCCAAACA+AGG | + | chr1.3:16325445-16325464 | None:intergenic | 30.0% |
! | TTTTCTTGGATACACATACT+AGG | + | chr1.3:16326183-16326202 | None:intergenic | 30.0% |
!! | AGTTTCAGATGATTTTCAAG+TGG | + | chr1.3:16328811-16328830 | None:intergenic | 30.0% |
!! | CTTTTAACCAAGTTTTGGTA+TGG | - | chr1.3:16326997-16327016 | MS.gene63001:intron | 30.0% |
!! | TATTTTTGTCAAACTAGCAC+CGG | - | chr1.3:16328981-16329000 | MS.gene63001:intron | 30.0% |
!!! | AATTTTTTCAAGAGCCTACA+CGG | + | chr1.3:16326465-16326484 | None:intergenic | 30.0% |
!!! | CTTTTTCAAGGTGAATAAGT+GGG | + | chr1.3:16325598-16325617 | None:intergenic | 30.0% |
!!! | GAAAGTCATACTAGTTTTCT+TGG | + | chr1.3:16326197-16326216 | None:intergenic | 30.0% |
!!! | TTTTGTTTTGATCACCTCTT+AGG | - | chr1.3:16329528-16329547 | MS.gene63001:CDS | 30.0% |
!!! | TTTTTCAAGGTGAATAAGTG+GGG | + | chr1.3:16325597-16325616 | None:intergenic | 30.0% |
!!! | TTTTTTTTGGTCAAGTAAGC+TGG | + | chr1.3:16325635-16325654 | None:intergenic | 30.0% |
AAGGGTTCAAACTTTAGCAT+TGG | - | chr1.3:16327044-16327063 | MS.gene63001:intron | 35.0% | |
ACCCAAGAAAGTTCAAACTT+GGG | - | chr1.3:16327184-16327203 | MS.gene63001:intron | 35.0% | |
ACTAATTCATAAGCCTCCTA+AGG | + | chr1.3:16328563-16328582 | None:intergenic | 35.0% | |
ACTTGATTGTCTTGACTGTA+GGG | - | chr1.3:16326431-16326450 | MS.gene63001:intron | 35.0% | |
AGACAAAATTGCCATCAATC+AGG | + | chr1.3:16328907-16328926 | None:intergenic | 35.0% | |
AGGAAAAGATACTCTCTGTT+AGG | + | chr1.3:16329426-16329445 | None:intergenic | 35.0% | |
ATTCTCACATTAGATGGCTT+TGG | + | chr1.3:16327599-16327618 | None:intergenic | 35.0% | |
CAGTTACAATACATGAACCA+TGG | + | chr1.3:16329289-16329308 | None:intergenic | 35.0% | |
CATTTGGCCTCAAAAAATCT+TGG | + | chr1.3:16328161-16328180 | None:intergenic | 35.0% | |
CCACTTATTCACCTTGAAAA+AGG | - | chr1.3:16325596-16325615 | MS.gene63001:intron | 35.0% | |
CGAAAGATTCTCACATTAGA+TGG | + | chr1.3:16327605-16327624 | None:intergenic | 35.0% | |
GATCAATAACATGCTTGTCT+TGG | + | chr1.3:16329557-16329576 | None:intergenic | 35.0% | |
GCAATATGGGTATTTGGTTA+CGG | - | chr1.3:16325120-16325139 | MS.gene63001:CDS | 35.0% | |
GCTTAAGTAGAGGTAAAAGT+TGG | + | chr1.3:16327944-16327963 | None:intergenic | 35.0% | |
GTCTCAAGGTTTAAGTATCT+TGG | + | chr1.3:16327906-16327925 | None:intergenic | 35.0% | |
TACCCAAGAAAGTTCAAACT+TGG | - | chr1.3:16327183-16327202 | MS.gene63001:intron | 35.0% | |
TACTTGATTGTCTTGACTGT+AGG | - | chr1.3:16326430-16326449 | MS.gene63001:intron | 35.0% | |
TTACATTGACCTTCTTGTCT+GGG | + | chr1.3:16328393-16328412 | None:intergenic | 35.0% | |
TTAGCTTAGAATGCGAGAAA+TGG | - | chr1.3:16326330-16326349 | MS.gene63001:CDS | 35.0% | |
TTAGGTTCTACTGATCATAG+AGG | - | chr1.3:16325302-16325321 | MS.gene63001:CDS | 35.0% | |
TTCAGCATGATCCTATATCT+AGG | + | chr1.3:16328718-16328737 | None:intergenic | 35.0% | |
TTCATCAAACGTCACTATGT+CGG | - | chr1.3:16328027-16328046 | MS.gene63001:intron | 35.0% | |
TTCGTCATTTCTACAATAGG+TGG | - | chr1.3:16327621-16327640 | MS.gene63001:intron | 35.0% | |
TTGATCTTGCAAATGAAGTC+AGG | - | chr1.3:16329571-16329590 | MS.gene63001:CDS | 35.0% | |
TTTACATTGACCTTCTTGTC+TGG | + | chr1.3:16328394-16328413 | None:intergenic | 35.0% | |
! | AAAGGTGTGTGATCTTGTTA+TGG | - | chr1.3:16329184-16329203 | MS.gene63001:intron | 35.0% |
! | GACAAGCATTGTTATATGCA+GGG | - | chr1.3:16325550-16325569 | MS.gene63001:intron | 35.0% |
! | GATACTTACTCTGTTTTGCA+AGG | - | chr1.3:16326853-16326872 | MS.gene63001:intron | 35.0% |
! | GATTAGTCATTGCTAAACTG+CGG | - | chr1.3:16327135-16327154 | MS.gene63001:intron | 35.0% |
! | GGTTCTTTGATTTCAAAAGC+TGG | - | chr1.3:16325141-16325160 | MS.gene63001:CDS | 35.0% |
!! | AGAATGTTATGATGGATGAG+TGG | + | chr1.3:16327710-16327729 | None:intergenic | 35.0% |
!! | GATTCCTAGACTTTGAAATG+TGG | + | chr1.3:16328689-16328708 | None:intergenic | 35.0% |
!! | GCTAGAATTCACCTTTTTCA+AGG | + | chr1.3:16325610-16325629 | None:intergenic | 35.0% |
!! | GCTGTTTTCATAAGCTATTC+TGG | - | chr1.3:16325998-16326017 | MS.gene63001:intron | 35.0% |
!!! | AGATTTTTTGAGGCCAAATG+AGG | - | chr1.3:16328161-16328180 | MS.gene63001:intron | 35.0% |
!!! | ATCTTCACTGATGGGTTTTT+AGG | - | chr1.3:16325284-16325303 | MS.gene63001:CDS | 35.0% |
!!! | CCTTTTTCAAGGTGAATAAG+TGG | + | chr1.3:16325599-16325618 | None:intergenic | 35.0% |
AACTACGATGAACGTCTTGT+TGG | - | chr1.3:16325168-16325187 | MS.gene63001:intron | 40.0% | |
ACACAAATTTCTCCATCAGC+AGG | + | chr1.3:16325365-16325384 | None:intergenic | 40.0% | |
ACGAGTTGTCCGATATCAAA+TGG | - | chr1.3:16326392-16326411 | MS.gene63001:intron | 40.0% | |
ACTCCAATGGTGATTGATGT+CGG | - | chr1.3:16328828-16328847 | MS.gene63001:intron | 40.0% | |
AGGCAAATAGTTCAAGCTGA+AGG | - | chr1.3:16329390-16329409 | MS.gene63001:CDS | 40.0% | |
AGTCACACATGTGCTTATGT+CGG | - | chr1.3:16326091-16326110 | MS.gene63001:intron | 40.0% | |
CATCAATCAGGTCACTATCT+CGG | + | chr1.3:16328895-16328914 | None:intergenic | 40.0% | |
CCAAGAAAGTTCAAACTTGG+GGG | - | chr1.3:16327186-16327205 | MS.gene63001:intron | 40.0% | |
CCCAAGAAAGTTCAAACTTG+GGG | - | chr1.3:16327185-16327204 | MS.gene63001:intron | 40.0% | |
CCCCAAGTTTGAACTTTCTT+GGG | + | chr1.3:16327188-16327207 | None:intergenic | 40.0% | |
CGATCTCAGCCATTTGATAT+CGG | + | chr1.3:16326404-16326423 | None:intergenic | 40.0% | |
CTATCTCGGACATTACAACA+AGG | + | chr1.3:16328881-16328900 | None:intergenic | 40.0% | |
GAAAAGGCTCTCCTTCAAAT+AGG | - | chr1.3:16329450-16329469 | MS.gene63001:intron | 40.0% | |
GACACCTTAAACTAGGTCAA+GGG | - | chr1.3:16327026-16327045 | MS.gene63001:intron | 40.0% | |
GATGCCACATTTCAAAGTCT+AGG | - | chr1.3:16328682-16328701 | MS.gene63001:intron | 40.0% | |
GTAATTGCTGCACAGTATCT+GGG | - | chr1.3:16328072-16328091 | MS.gene63001:intron | 40.0% | |
GTGTATGGTGAAACCTGATT+GGG | - | chr1.3:16327069-16327088 | MS.gene63001:intron | 40.0% | |
TACATTGACCTTCTTGTCTG+GGG | + | chr1.3:16328392-16328411 | None:intergenic | 40.0% | |
TCAGTCGAATCTCTATCACA+TGG | + | chr1.3:16327320-16327339 | None:intergenic | 40.0% | |
TCGTGAACTTCTACTTCTGA+GGG | + | chr1.3:16328854-16328873 | None:intergenic | 40.0% | |
TCTCCAAAAGCAGAAATCCA+CGG | + | chr1.3:16329042-16329061 | None:intergenic | 40.0% | |
TCTTGGATACACATACTAGG+AGG | + | chr1.3:16326180-16326199 | None:intergenic | 40.0% | |
TGAACCCTTGACCTAGTTTA+AGG | + | chr1.3:16327033-16327052 | None:intergenic | 40.0% | |
TGAATGCCCTGTGGAAATTT+AGG | - | chr1.3:16329314-16329333 | MS.gene63001:intron | 40.0% | |
TGTAATTGCTGCACAGTATC+TGG | - | chr1.3:16328071-16328090 | MS.gene63001:intron | 40.0% | |
TGTCTTGACTGTAGGGAATA+CGG | - | chr1.3:16326438-16326457 | MS.gene63001:intron | 40.0% | |
TTTCTTGGGTAACTATGTGC+AGG | + | chr1.3:16327174-16327193 | None:intergenic | 40.0% | |
! | CGTGACTTTTGCTTAAGTAG+AGG | + | chr1.3:16327954-16327973 | None:intergenic | 40.0% |
! | CTGTTTTGCAAGGAGATAGT+GGG | - | chr1.3:16326863-16326882 | MS.gene63001:intron | 40.0% |
! | GATTCGACTGAGTTTTACGT+TGG | - | chr1.3:16327329-16327348 | MS.gene63001:intron | 40.0% |
! | GGACAAGCATTGTTATATGC+AGG | - | chr1.3:16325549-16325568 | MS.gene63001:intron | 40.0% |
! | GGTTCAAACTTTAGCATTGG+TGG | - | chr1.3:16327047-16327066 | MS.gene63001:intron | 40.0% |
! | GTGATCTTGTTATGGACACA+CGG | - | chr1.3:16329192-16329211 | MS.gene63001:intron | 40.0% |
! | GTTTTCACTGTAAGTGTCAC+AGG | - | chr1.3:16328135-16328154 | MS.gene63001:intron | 40.0% |
! | TCTGTTTTGCAAGGAGATAG+TGG | - | chr1.3:16326862-16326881 | MS.gene63001:intron | 40.0% |
! | TGTTTTGCAAGGAGATAGTG+GGG | - | chr1.3:16326864-16326883 | MS.gene63001:intron | 40.0% |
!! | ACTTTAGCATTGGTGGTGTA+TGG | - | chr1.3:16327054-16327073 | MS.gene63001:intron | 40.0% |
!! | CCAAGTTTTGGTATGGAACT+CGG | - | chr1.3:16327004-16327023 | MS.gene63001:intron | 40.0% |
!! | TTGCTGATTAAGGCCTTGTT+TGG | - | chr1.3:16325429-16325448 | MS.gene63001:intron | 40.0% |
!!! | GAGATTTTTTTGTCCTTGGC+AGG | - | chr1.3:16325528-16325547 | MS.gene63001:intron | 40.0% |
!!! | TCACAGGCCAAGATTTTTTG+AGG | - | chr1.3:16328151-16328170 | MS.gene63001:intron | 40.0% |
AACTGAGACGATGACCAAAC+CGG | + | chr1.3:16329003-16329022 | None:intergenic | 45.0% | |
ACGAAACGATGCACCTCATT+TGG | + | chr1.3:16328177-16328196 | None:intergenic | 45.0% | |
AGCATTGTTATATGCAGGGC+CGG | - | chr1.3:16325554-16325573 | MS.gene63001:intron | 45.0% | |
ATACTCTCTGTTAGGTCCTG+TGG | + | chr1.3:16329418-16329437 | None:intergenic | 45.0% | |
ATGGTGAAACCTGATTGGGA+GGG | - | chr1.3:16327073-16327092 | MS.gene63001:intron | 45.0% | |
CCCCCAAGTTTGAACTTTCT+TGG | + | chr1.3:16327189-16327208 | None:intergenic | 45.0% | |
CCGAGTTCCATACCAAAACT+TGG | + | chr1.3:16327007-16327026 | None:intergenic | 45.0% | |
CGAGATAGTGACCTGATTGA+TGG | - | chr1.3:16328893-16328912 | MS.gene63001:intron | 45.0% | |
CGTCTGTTGAAGAGATTGCA+AGG | - | chr1.3:16328428-16328447 | MS.gene63001:intron | 45.0% | |
CTCGGACATTACAACAAGGA+GGG | + | chr1.3:16328877-16328896 | None:intergenic | 45.0% | |
GAACTCGGACACCTTAAACT+AGG | - | chr1.3:16327019-16327038 | MS.gene63001:intron | 45.0% | |
GGACACCTTAAACTAGGTCA+AGG | - | chr1.3:16327025-16327044 | MS.gene63001:intron | 45.0% | |
GGCTCTCCTTCAAATAGGTA+AGG | - | chr1.3:16329455-16329474 | MS.gene63001:intron | 45.0% | |
GGTGTATGGTGAAACCTGAT+TGG | - | chr1.3:16327068-16327087 | MS.gene63001:intron | 45.0% | |
GTCGTGAACTTCTACTTCTG+AGG | + | chr1.3:16328855-16328874 | None:intergenic | 45.0% | |
GTCTCAGTTGTGAGGACAAA+GGG | - | chr1.3:16329014-16329033 | MS.gene63001:intron | 45.0% | |
TAACAATGCTTGTCCTGCCA+AGG | + | chr1.3:16325544-16325563 | None:intergenic | 45.0% | |
TACTCTCTGTTAGGTCCTGT+GGG | + | chr1.3:16329417-16329436 | None:intergenic | 45.0% | |
TAGTCATTGCTAAACTGCGG+TGG | - | chr1.3:16327138-16327157 | MS.gene63001:intron | 45.0% | |
TATAGCATCCCCAGACAAGA+AGG | - | chr1.3:16328381-16328400 | MS.gene63001:intron | 45.0% | |
TATCGACGTGTCTTCTACCA+AGG | - | chr1.3:16325204-16325223 | MS.gene63001:intron | 45.0% | |
TATGGTGAAACCTGATTGGG+AGG | - | chr1.3:16327072-16327091 | MS.gene63001:intron | 45.0% | |
TCTCAGTTGTGAGGACAAAG+GGG | - | chr1.3:16329015-16329034 | MS.gene63001:intron | 45.0% | |
TCTCGGACATTACAACAAGG+AGG | + | chr1.3:16328878-16328897 | None:intergenic | 45.0% | |
TGAACCATGGCAAGTTCTAC+TGG | + | chr1.3:16329276-16329295 | None:intergenic | 45.0% | |
TGGGTAACTATGTGCAGGAA+AGG | + | chr1.3:16327169-16327188 | None:intergenic | 45.0% | |
TTCATAAGCCTCCTAAGGCA+AGG | + | chr1.3:16328558-16328577 | None:intergenic | 45.0% | |
TTTCACTTACACCAATGCCC+CGG | + | chr1.3:16328283-16328302 | None:intergenic | 45.0% | |
!! | ACTGTGTTTTGAATGCCCTG+TGG | - | chr1.3:16329305-16329324 | MS.gene63001:intron | 45.0% |
!! | TTGTCAAACTAGCACCGGTT+TGG | - | chr1.3:16328986-16329005 | MS.gene63001:intron | 45.0% |
!!! | GAAGGAGAGCCTTTTCAAGT+AGG | + | chr1.3:16329446-16329465 | None:intergenic | 45.0% |
!!! | GATTTTCAAGTGGCGATCCA+AGG | + | chr1.3:16328801-16328820 | None:intergenic | 45.0% |
!!! | GTTTTGGAGATCCTTGCCTT+AGG | - | chr1.3:16328544-16328563 | MS.gene63001:intron | 45.0% |
ACAGTTCTGCCAGGAAACTC+AGG | + | chr1.3:16325332-16325351 | None:intergenic | 50.0% | |
ACCATGGCAAGTTCTACTGG+CGG | + | chr1.3:16329273-16329292 | None:intergenic | 50.0% | |
ACCTCTAGTGGTCGCATACT+AGG | + | chr1.3:16327365-16327384 | None:intergenic | 50.0% | |
AGTATGCGACCACTAGAGGT+AGG | - | chr1.3:16327365-16327384 | MS.gene63001:intron | 50.0% | |
AGTTCTGCCAGGAAACTCAG+GGG | + | chr1.3:16325330-16325349 | None:intergenic | 50.0% | |
CAGTTCTGCCAGGAAACTCA+GGG | + | chr1.3:16325331-16325350 | None:intergenic | 50.0% | |
CATTGTTATATGCAGGGCCG+GGG | - | chr1.3:16325556-16325575 | MS.gene63001:intron | 50.0% | |
CGTCTCAGTTGTGAGGACAA+AGG | - | chr1.3:16329013-16329032 | MS.gene63001:intron | 50.0% | |
GCAATCTCTTCAACAGACGC+AGG | + | chr1.3:16328427-16328446 | None:intergenic | 50.0% | |
GCATTGTTATATGCAGGGCC+GGG | - | chr1.3:16325555-16325574 | MS.gene63001:intron | 50.0% | |
GCTTGTCTTGGCATCCTAAG+AGG | + | chr1.3:16329545-16329564 | None:intergenic | 50.0% | |
GGAGAAGCAATACGATCGGA+AGG | - | chr1.3:16328101-16328120 | MS.gene63001:intron | 50.0% | |
GTATGCGACCACTAGAGGTA+GGG | - | chr1.3:16327366-16327385 | MS.gene63001:intron | 50.0% | |
GTCACATTGGAACCTGCTGA+TGG | - | chr1.3:16325350-16325369 | MS.gene63001:intron | 50.0% | |
TATGCGACCACTAGAGGTAG+GGG | - | chr1.3:16327367-16327386 | MS.gene63001:intron | 50.0% | |
TCCAATGTGACAGTTCTGCC+AGG | + | chr1.3:16325341-16325360 | None:intergenic | 50.0% | |
TCCTGGCAGAACTGTCACAT+TGG | - | chr1.3:16325337-16325356 | MS.gene63001:intron | 50.0% | |
TGCGGGAGAAGCAATACGAT+CGG | - | chr1.3:16328097-16328116 | MS.gene63001:intron | 50.0% | |
TGGTCATCGTCTCAGTTGTG+AGG | - | chr1.3:16329006-16329025 | MS.gene63001:intron | 50.0% | |
TGGTGAAACCTGATTGGGAG+GGG | - | chr1.3:16327074-16327093 | MS.gene63001:intron | 50.0% | |
TGGTTCACGAGCAAGTTCCA+CGG | - | chr1.3:16328767-16328786 | MS.gene63001:intron | 50.0% | |
TTGGAGATCCTTGCCTTAGG+AGG | - | chr1.3:16328547-16328566 | MS.gene63001:intron | 50.0% | |
! | AGGTGAATAAGTGGGGTGTC+CGG | + | chr1.3:16325590-16325609 | None:intergenic | 50.0% |
! | CTACAACGCCAGCTATTTCC+GGG | - | chr1.3:16328262-16328281 | MS.gene63001:intron | 50.0% |
! | GCTACAACGCCAGCTATTTC+CGG | - | chr1.3:16328261-16328280 | MS.gene63001:intron | 50.0% |
! | GGACCGTGGATTTCTGCTTT+TGG | - | chr1.3:16329036-16329055 | MS.gene63001:intron | 50.0% |
! | TACAACGCCAGCTATTTCCG+GGG | - | chr1.3:16328263-16328282 | MS.gene63001:intron | 50.0% |
ACCAATGCCCCGGAAATAGC+TGG | + | chr1.3:16328273-16328292 | None:intergenic | 55.0% | |
AGAGGAACCCCTGAGTTTCC+TGG | - | chr1.3:16325320-16325339 | MS.gene63001:CDS | 55.0% | |
ATGCGACCACTAGAGGTAGG+GGG | - | chr1.3:16327368-16327387 | MS.gene63001:intron | 55.0% | |
CTGCACAGTATCTGGGAGTG+CGG | - | chr1.3:16328079-16328098 | MS.gene63001:intron | 55.0% | |
GCCTAGTATGCGACCACTAG+AGG | - | chr1.3:16327361-16327380 | MS.gene63001:intron | 55.0% | |
GGGCCGACATCAATCACCAT+TGG | + | chr1.3:16328834-16328853 | None:intergenic | 55.0% | |
GTAGGGAATACGGACCGTGT+AGG | - | chr1.3:16326448-16326467 | MS.gene63001:CDS | 55.0% | |
GTTCAAGCTGAAGGTCCCAC+AGG | - | chr1.3:16329399-16329418 | MS.gene63001:CDS | 55.0% | |
TCCGCCAGTAGAACTTGCCA+TGG | - | chr1.3:16329269-16329288 | MS.gene63001:intron | 55.0% | |
TGGCAAGTTCTACTGGCGGA+TGG | + | chr1.3:16329269-16329288 | None:intergenic | 55.0% | |
TTCACGAGCAAGTTCCACGG+CGG | - | chr1.3:16328770-16328789 | MS.gene63001:intron | 55.0% | |
! | GGTGAATAAGTGGGGTGTCC+GGG | + | chr1.3:16325589-16325608 | None:intergenic | 55.0% |
! | GTGAATAAGTGGGGTGTCCG+GGG | + | chr1.3:16325588-16325607 | None:intergenic | 55.0% |
! | TGCACAGTATCTGGGAGTGC+GGG | - | chr1.3:16328080-16328099 | MS.gene63001:intron | 55.0% |
AGGTCTCCCCCTACCTCTAG+TGG | + | chr1.3:16327377-16327396 | None:intergenic | 60.0% | |
CGAGTTCTCCCCTCCCAATC+AGG | + | chr1.3:16327085-16327104 | None:intergenic | 60.0% | |
GATCCAAGGTGATACCGCCG+TGG | + | chr1.3:16328787-16328806 | None:intergenic | 60.0% | |
GTTCCACGGCGGTATCACCT+TGG | - | chr1.3:16328781-16328800 | MS.gene63001:intron | 60.0% | |
TGTGAGGACAAAGGGGACCG+TGG | - | chr1.3:16329022-16329041 | MS.gene63001:intron | 60.0% | |
! | GCCAGCTATTTCCGGGGCAT+TGG | - | chr1.3:16328269-16328288 | MS.gene63001:intron | 60.0% |
GGTGTCCGGGGTTCGAACCC+CGG | + | chr1.3:16325576-16325595 | None:intergenic | 70.0% | |
CAGGGCCGGGGTTCGAACCC+CGG | - | chr1.3:16325568-16325587 | MS.gene63001:intron | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 16325117 | 16329617 | 16325117 | ID=MS.gene63001 |
chr1.3 | mRNA | 16325117 | 16329617 | 16325117 | ID=MS.gene63001.t1;Parent=MS.gene63001 |
chr1.3 | exon | 16329509 | 16329617 | 16329509 | ID=MS.gene63001.t1.exon1;Parent=MS.gene63001.t1 |
chr1.3 | CDS | 16329509 | 16329617 | 16329509 | ID=cds.MS.gene63001.t1;Parent=MS.gene63001.t1 |
chr1.3 | exon | 16329352 | 16329428 | 16329352 | ID=MS.gene63001.t1.exon2;Parent=MS.gene63001.t1 |
chr1.3 | CDS | 16329352 | 16329428 | 16329352 | ID=cds.MS.gene63001.t1;Parent=MS.gene63001.t1 |
chr1.3 | exon | 16327799 | 16327852 | 16327799 | ID=MS.gene63001.t1.exon3;Parent=MS.gene63001.t1 |
chr1.3 | CDS | 16327799 | 16327852 | 16327799 | ID=cds.MS.gene63001.t1;Parent=MS.gene63001.t1 |
chr1.3 | exon | 16326591 | 16326647 | 16326591 | ID=MS.gene63001.t1.exon4;Parent=MS.gene63001.t1 |
chr1.3 | CDS | 16326591 | 16326647 | 16326591 | ID=cds.MS.gene63001.t1;Parent=MS.gene63001.t1 |
chr1.3 | exon | 16326442 | 16326482 | 16326442 | ID=MS.gene63001.t1.exon5;Parent=MS.gene63001.t1 |
chr1.3 | CDS | 16326442 | 16326482 | 16326442 | ID=cds.MS.gene63001.t1;Parent=MS.gene63001.t1 |
chr1.3 | exon | 16326285 | 16326356 | 16326285 | ID=MS.gene63001.t1.exon6;Parent=MS.gene63001.t1 |
chr1.3 | CDS | 16326285 | 16326356 | 16326285 | ID=cds.MS.gene63001.t1;Parent=MS.gene63001.t1 |
chr1.3 | exon | 16325263 | 16325342 | 16325263 | ID=MS.gene63001.t1.exon7;Parent=MS.gene63001.t1 |
chr1.3 | CDS | 16325263 | 16325342 | 16325263 | ID=cds.MS.gene63001.t1;Parent=MS.gene63001.t1 |
chr1.3 | exon | 16325117 | 16325184 | 16325117 | ID=MS.gene63001.t1.exon8;Parent=MS.gene63001.t1 |
chr1.3 | CDS | 16325117 | 16325184 | 16325117 | ID=cds.MS.gene63001.t1;Parent=MS.gene63001.t1 |
Gene Sequence |
Protein sequence |