AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene014719

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene014719.t1 MTR_3g109030 98.864 704 8 0 1 704 23 726 0.0 1448
MS.gene014719.t1 MTR_2g460590 74.814 671 162 5 35 704 27 691 0.0 1048
MS.gene014719.t1 MTR_7g034605 62.158 658 224 7 47 698 40 678 0.0 856
MS.gene014719.t1 MTR_3g088875 59.104 670 254 8 46 703 31 692 0.0 807
MS.gene014719.t1 MTR_2g094860 57.485 668 253 7 38 700 62 703 0.0 775
MS.gene014719.t1 MTR_4g058730 62.326 576 207 4 38 611 44 611 0.0 750
MS.gene014719.t1 MTR_4g130820 55.126 673 266 9 39 703 87 731 0.0 723
MS.gene014719.t1 MTR_1g064240 53.313 664 292 6 38 698 58 706 0.0 721
MS.gene014719.t1 MTR_1g028370 53.144 668 269 10 48 702 80 716 0.0 710
MS.gene014719.t1 MTR_3g091080 53.223 667 269 9 48 702 78 713 0.0 706
MS.gene014719.t1 MTR_7g117310 49.852 676 277 11 48 700 80 716 0.0 637
MS.gene014719.t1 MTR_7g117310 49.852 676 277 11 48 700 92 728 0.0 637
MS.gene014719.t1 MTR_7g117310 49.852 676 277 11 48 700 26 662 0.0 636
MS.gene014719.t1 MTR_8g027755 47.951 659 305 8 51 697 85 717 0.0 623
MS.gene014719.t1 MTR_6g477760 40.809 593 316 12 51 624 123 699 4.54e-133 409
MS.gene014719.t1 MTR_5g007630 40.504 595 314 15 51 630 172 741 3.75e-131 405
MS.gene014719.t1 MTR_8g464570 39.731 594 315 14 52 623 63 635 9.57e-130 399
MS.gene014719.t1 MTR_6g075440 37.124 598 334 14 51 628 169 744 3.72e-126 393
MS.gene014719.t1 MTR_6g075440 37.291 598 333 14 51 628 169 744 4.85e-126 393
MS.gene014719.t1 MTR_6g075290 39.626 588 317 11 46 615 188 755 1.78e-120 378
MS.gene014719.t1 MTR_2g081110 38.370 589 331 15 49 623 61 631 4.09e-118 369
MS.gene014719.t1 MTR_7g012260 37.778 585 348 9 50 625 108 685 9.36e-114 359
MS.gene014719.t1 MTR_6g075290 39.891 549 296 11 85 615 21 553 1.01e-110 346
MS.gene014719.t1 MTR_6g075290 40.296 541 289 10 93 615 190 714 7.89e-109 346
MS.gene014719.t1 MTR_6g075390 37.057 564 320 14 50 597 114 658 4.26e-107 340
MS.gene014719.t1 MTR_6g075410 32.759 580 357 12 50 615 97 657 8.41e-93 302
MS.gene014719.t1 MTR_6g076060 36.059 477 275 12 172 632 14 476 9.81e-82 268
MS.gene014719.t1 MTR_2g094810 64.220 109 39 0 134 242 12 120 7.95e-42 148
MS.gene014719.t1 MTR_6g075320 32.520 123 79 1 50 172 148 266 1.12e-20 93.6
MS.gene014719.t1 MTR_6g075460 41.379 87 50 1 550 635 45 131 3.54e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene014719.t1 AT2G24610 71.157 683 189 2 24 700 45 725 0.0 1015
MS.gene014719.t1 AT2G24610 71.157 683 189 2 24 700 60 740 0.0 1013
MS.gene014719.t1 AT4G30360 68.533 661 197 5 47 703 67 720 0.0 949
MS.gene014719.t1 AT5G14870 59.407 675 251 6 47 703 36 705 0.0 837
MS.gene014719.t1 AT3G48010 59.791 669 245 7 48 697 41 704 0.0 810
MS.gene014719.t1 AT2G28260 56.561 663 249 6 38 700 15 638 0.0 760
MS.gene014719.t1 AT2G28260 55.735 680 255 7 28 700 38 678 0.0 759
MS.gene014719.t1 AT1G15990 55.804 672 276 11 39 700 78 738 0.0 733
MS.gene014719.t1 AT5G57940 53.502 671 274 7 39 700 69 710 0.0 715
MS.gene014719.t1 AT5G57940 53.502 671 274 7 39 700 76 717 0.0 714
MS.gene014719.t1 AT5G57940 53.502 671 274 7 39 700 76 717 0.0 714
MS.gene014719.t1 AT1G19780 54.451 674 292 7 39 704 85 751 0.0 711
MS.gene014719.t1 AT2G23980 53.461 679 275 6 39 700 91 745 0.0 709
MS.gene014719.t1 AT2G23980 53.461 679 275 6 39 700 91 745 0.0 709
MS.gene014719.t1 AT2G23980 53.461 679 275 6 39 700 64 718 0.0 709
MS.gene014719.t1 AT2G23980 53.461 679 275 6 39 700 91 745 0.0 709
MS.gene014719.t1 AT2G23980 53.461 679 275 6 39 700 91 745 0.0 709
MS.gene014719.t1 AT2G23980 53.461 679 275 6 39 700 91 745 0.0 709
MS.gene014719.t1 AT4G30560 53.869 672 268 9 39 700 91 730 0.0 705
MS.gene014719.t1 AT4G30560 53.869 672 268 9 39 700 65 704 0.0 705
MS.gene014719.t1 AT4G30560 53.869 672 268 9 39 700 65 704 0.0 705
MS.gene014719.t1 AT4G30560 53.869 672 268 9 39 700 65 704 0.0 705
MS.gene014719.t1 AT4G30560 53.869 672 268 9 39 700 91 730 0.0 705
MS.gene014719.t1 AT2G23980 51.852 702 274 7 39 700 91 768 0.0 696
MS.gene014719.t1 AT2G23980 51.852 702 274 7 39 700 91 768 0.0 696
MS.gene014719.t1 AT2G23980 51.852 702 274 7 39 700 91 768 0.0 696
MS.gene014719.t1 AT2G23980 51.852 702 274 7 39 700 91 768 0.0 696
MS.gene014719.t1 AT5G53130 52.474 667 267 7 50 700 83 715 0.0 691
MS.gene014719.t1 AT4G01010 50.379 659 290 10 48 699 65 693 0.0 667
MS.gene014719.t1 AT4G01010 50.379 659 290 10 48 699 65 693 0.0 667
MS.gene014719.t1 AT1G01340 48.755 683 324 7 29 704 47 710 0.0 667
MS.gene014719.t1 AT1G01340 48.755 683 324 7 29 704 42 705 0.0 666
MS.gene014719.t1 AT2G46430 48.030 660 308 8 50 700 71 704 0.0 622
MS.gene014719.t1 AT2G46430 48.030 660 308 8 50 700 71 704 0.0 622
MS.gene014719.t1 AT1G19780 55.166 542 232 6 171 704 2 540 0.0 575
MS.gene014719.t1 AT2G46440 43.863 611 309 9 62 667 40 621 2.70e-166 492
MS.gene014719.t1 AT2G46450 38.710 651 340 12 62 698 40 645 1.59e-148 447
MS.gene014719.t1 AT2G46450 38.710 651 340 12 62 698 40 645 1.59e-148 447
MS.gene014719.t1 AT2G46450 37.481 651 325 14 62 698 27 609 1.88e-137 417
MS.gene014719.t1 AT2G46450 37.481 651 325 14 62 698 40 622 3.49e-137 417
MS.gene014719.t1 AT2G46440 47.742 465 216 7 208 667 1 443 7.95e-136 407
MS.gene014719.t1 AT5G54250 37.604 601 344 12 42 623 68 656 5.86e-123 382
MS.gene014719.t1 AT5G54250 37.604 601 344 12 42 623 68 656 5.86e-123 382
MS.gene014719.t1 AT5G54250 37.604 601 344 12 42 623 68 656 5.86e-123 382
MS.gene014719.t1 AT3G17690 37.671 584 323 14 51 617 158 717 1.54e-119 374
MS.gene014719.t1 AT5G54250 37.105 601 342 13 42 623 68 651 5.53e-118 369
MS.gene014719.t1 AT5G15410 39.229 571 329 10 51 609 112 676 6.15e-117 367
MS.gene014719.t1 AT5G15410 39.229 571 329 10 51 609 113 677 1.21e-116 367
MS.gene014719.t1 AT3G17700 38.850 574 316 14 51 609 192 745 1.11e-115 365
MS.gene014719.t1 AT3G17690 37.854 494 284 10 51 540 158 632 2.41e-105 335
MS.gene014719.t1 AT3G17700 38.878 499 281 11 51 545 192 670 1.30e-102 329
MS.gene014719.t1 AT3G17690 36.658 371 219 8 51 417 158 516 8.27e-71 240

Find 138 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAGAAATCACCAGGCTTTA+AGG 0.175254 3.1:+86918202 None:intergenic
TTGAAAACTTTGCTACTTTC+AGG 0.193295 3.1:+86919465 None:intergenic
ATCATCCATTTGTGAGAAAA+AGG 0.198307 3.1:+86918391 None:intergenic
TCCAGGAAGTGATATCTTTC+TGG 0.203240 3.1:-86920977 MS.gene014719:CDS
TTAACTATCTGAGAACTTAA+TGG 0.217102 3.1:+86919863 None:intergenic
GGCAAGTTGAGAATAGATTT+TGG 0.219458 3.1:+86918149 None:intergenic
ATGGTTACTGATTTGAATTT+AGG 0.266613 3.1:-86920847 MS.gene014719:CDS
ATCCTATACTTGTAGGTCTT+AGG 0.275982 3.1:-86919660 MS.gene014719:intron
GTGGGCTGCTTGTTTCATTC+AGG 0.278581 3.1:-86917976 MS.gene014719:CDS
GCAATACTCATAGCTATCTT+AGG 0.306889 3.1:-86919138 MS.gene014719:CDS
ACCGAGAAATCTGGCTCTTC+AGG 0.315045 3.1:+86917699 None:intergenic
CTTGTTTCATTCAGGTTGCT+TGG 0.324454 3.1:-86917968 MS.gene014719:CDS
GCCTGAAGAGCCAGATTTCT+CGG 0.346000 3.1:-86917700 MS.gene014719:CDS
TCCTATACTTGTAGGTCTTA+GGG 0.348092 3.1:-86919659 MS.gene014719:intron
GAATTGTTGTCACATGTATT+CGG 0.355501 3.1:-86920825 MS.gene014719:CDS
GAATCTAGGTGTCACTATAT+TGG 0.375335 3.1:-86917796 MS.gene014719:CDS
TATTGAGCTTAATCATCTTC+AGG 0.380192 3.1:+86917672 None:intergenic
TTGAAAGGCATGCTACTTGC+TGG 0.383457 3.1:-86919614 MS.gene014719:CDS
GGTCTGTAGGGAGGCCTCTC+AGG 0.385793 3.1:+86918766 None:intergenic
TGAACATGGTCATAAAGTTT+AGG 0.386589 3.1:-86920777 MS.gene014719:CDS
CTTGAAAGCTCAACCACAAA+TGG 0.387154 3.1:-86918254 MS.gene014719:CDS
CCTTTGTGTCACCAAGTTCA+AGG 0.389502 3.1:-86920750 MS.gene014719:CDS
TCATGGGAGCTTCTAATTGC+TGG 0.396892 3.1:+86919956 None:intergenic
TTAACTGTTCTTGTAGAAGA+AGG 0.414807 3.1:+86918128 None:intergenic
TTTGTTGGCAGATTGTGATT+TGG 0.416028 3.1:-86919988 MS.gene014719:intron
GAAATGTATTCTTAACTACT+TGG 0.420344 3.1:-86919559 MS.gene014719:CDS
TGCTGCACTGCCACTTCCCC+AGG 0.420917 3.1:-86920644 MS.gene014719:intron
ATATCTTTCTGGAATGGAAA+AGG 0.422284 3.1:-86920966 MS.gene014719:CDS
GATTCAGAAAATTCTTAATC+CGG 0.425227 3.1:-86921121 MS.gene014719:CDS
TCCAGAAAGATATCACTTCC+TGG 0.429916 3.1:+86920976 None:intergenic
CGGAGAAGAGTTACTTGCTT+GGG 0.432621 3.1:-86918180 MS.gene014719:CDS
CCAATGCTCTCTTCTTGAAC+CGG 0.438239 3.1:+86917943 None:intergenic
CGGAAGGGGTGAACTTGTCA+TGG 0.438610 3.1:-86920722 MS.gene014719:CDS
TTGAAAGCTCAACCACAAAT+GGG 0.439484 3.1:-86918253 MS.gene014719:CDS
GGCAAGTAGTCTTAGCTTGA+GGG 0.446589 3.1:-86917922 MS.gene014719:CDS
TCATTCAGGTTGCTTGGCGC+CGG 0.447565 3.1:-86917962 MS.gene014719:CDS
TATTGCTTGTTCATCAATGA+AGG 0.447994 3.1:+86917890 None:intergenic
GTACCTCTATTGTTTGTGGT+GGG 0.450848 3.1:-86919382 MS.gene014719:CDS
CTTCCGAAAATCCTTGAACT+TGG 0.453966 3.1:+86920739 None:intergenic
TGAACAAGCAATATATCAAA+TGG 0.454763 3.1:-86917880 MS.gene014719:CDS
TGTTGTCACAAAGACGGCTT+GGG 0.456380 3.1:-86919831 MS.gene014719:CDS
GCGAATACTACTTCTGTGTT+TGG 0.457100 3.1:-86919498 MS.gene014719:CDS
ACTCATAGCTATCTTAGGTC+TGG 0.458025 3.1:-86919133 MS.gene014719:CDS
TCAGGCTCTACCGAGAAATC+TGG 0.461654 3.1:+86917690 None:intergenic
ACACAAGTAAAACAGAATCT+AGG 0.463470 3.1:-86917810 MS.gene014719:CDS
AGCGACGTGACACGGAAGAA+TGG 0.467271 3.1:-86918887 MS.gene014719:CDS
AACTCTATTACCTTAAAGCC+TGG 0.468634 3.1:-86918212 MS.gene014719:CDS
TCCAATGGTAAGAGTAGAAA+CGG 0.470184 3.1:+86918003 None:intergenic
AGAAGTACCTCTATTGTTTG+TGG 0.471939 3.1:-86919386 MS.gene014719:CDS
TAAAAGATTGTAAGCAGCTC+CGG 0.475216 3.1:+86919808 None:intergenic
TCAAGAATTCTCTTCTTCCA+TGG 0.476790 3.1:+86921000 None:intergenic
GTCACAAAGACGGCTTGGGC+CGG 0.477701 3.1:-86919827 MS.gene014719:CDS
CCTGCATGTTGCCGATTAAG+TGG 0.477978 3.1:+86919100 None:intergenic
TACCTCTATTGTTTGTGGTG+GGG 0.478499 3.1:-86919381 MS.gene014719:CDS
GGTCTAAGCAAAGGTGGCGT+TGG 0.478733 3.1:+86918730 None:intergenic
TTGCTGCAAACACAAGGAAA+GGG 0.481476 3.1:-86917764 MS.gene014719:CDS
TCCGTTTCTACTCTTACCAT+TGG 0.485455 3.1:-86918004 MS.gene014719:CDS
CACAGTAATAGATTGCAAAT+AGG 0.485982 3.1:+86918932 None:intergenic
TATCTTTCTGGAATGGAAAA+GGG 0.486484 3.1:-86920965 MS.gene014719:CDS
GTTTCTACTCTTACCATTGG+AGG 0.488194 3.1:-86918001 MS.gene014719:CDS
AATCAGTACAAGAGCATTGT+TGG 0.488772 3.1:+86919925 None:intergenic
ACTCTTACCATTGGAGGACG+TGG 0.489454 3.1:-86917995 MS.gene014719:CDS
AGTACCTCTATTGTTTGTGG+TGG 0.491884 3.1:-86919383 MS.gene014719:CDS
TGAATCTTGTAAACTGACAT+TGG 0.495117 3.1:+86921138 None:intergenic
GTGAACTTGTCATGGATCCT+AGG 0.499256 3.1:-86920714 MS.gene014719:CDS
TCTCAGATAGTTAAAGCTAC+TGG 0.501867 3.1:-86919854 MS.gene014719:CDS
GGTATTTGTTGTCAATTGAA+AGG 0.506989 3.1:-86919629 MS.gene014719:CDS
ACACGCTCTCTCAGAAATTG+TGG 0.507700 3.1:+86918846 None:intergenic
AAGAAGAGAATTCTTGATCC+AGG 0.518081 3.1:-86920994 MS.gene014719:CDS
CACGCTCTCTCAGAAATTGT+GGG 0.520616 3.1:+86918847 None:intergenic
ATATCTCTACGAAGGTCTGT+AGG 0.525689 3.1:+86918753 None:intergenic
ACTTGTACTGAACAAATCTT+CGG 0.526962 3.1:+86918823 None:intergenic
TGATGCAATATGCGAGCGAT+TGG 0.529832 3.1:-86918360 MS.gene014719:CDS
CAGAAAATTCTTAATCCGGA+AGG 0.532663 3.1:-86921117 MS.gene014719:CDS
GAAGTGATATCTTTCTGGAA+TGG 0.535245 3.1:-86920972 MS.gene014719:CDS
GACTACAAGCACATTTGTGT+GGG 0.537408 3.1:-86919172 MS.gene014719:CDS
CATTGTTGGTATGATCATCA+TGG 0.538295 3.1:+86919939 None:intergenic
ATCTTCTGCTCTAAGTTCAA+AGG 0.541160 3.1:+86918085 None:intergenic
GAAGATTTGTTCAGTACAAG+TGG 0.543042 3.1:-86918821 MS.gene014719:CDS
TGGCAAGTAGTCTTAGCTTG+AGG 0.544113 3.1:-86917923 MS.gene014719:CDS
CGATGGTGATCGCGTGAAGT+GGG 0.546005 3.1:-86919520 MS.gene014719:CDS
GCGGAGAAGAGTTACTTGCT+TGG 0.546677 3.1:-86918181 MS.gene014719:CDS
TTAGTTGATATTGCCACAGA+TGG 0.547059 3.1:+86920886 None:intergenic
GTGTTGTCACAAAGACGGCT+TGG 0.550466 3.1:-86919832 MS.gene014719:CDS
ATCTGGGGACATATTGAAGC+AGG 0.554038 3.1:+86919900 None:intergenic
CAAGATTTGCTGCAAACACA+AGG 0.555546 3.1:-86917770 MS.gene014719:CDS
TTTGCTGCAAACACAAGGAA+AGG 0.556128 3.1:-86917765 MS.gene014719:CDS
GTGATAGTATGCAAGAACAT+AGG 0.556281 3.1:+86920938 None:intergenic
CCACTTAATCGGCAACATGC+AGG 0.556710 3.1:-86919100 MS.gene014719:intron
TGATCTAGTACCTGGGGAAG+TGG 0.557865 3.1:+86920634 None:intergenic
TGCGAGACGGTATTTGAGAT+CGG 0.559779 3.1:-86920686 MS.gene014719:CDS
AGCCCCACCACAAACAATAG+AGG 0.561895 3.1:+86919379 None:intergenic
ACGATGGTGATCGCGTGAAG+TGG 0.566242 3.1:-86919521 MS.gene014719:CDS
GTATCATCCTTGAGTACTCA+AGG 0.567469 3.1:-86918338 MS.gene014719:CDS
CCTATACTTGTAGGTCTTAG+GGG 0.569577 3.1:-86919658 MS.gene014719:intron
TAATAAGAATTCATCATGCA+TGG 0.572982 3.1:-86920866 MS.gene014719:CDS
TAGTTAAGAATACATTTCAC+AGG 0.574590 3.1:+86919564 None:intergenic
GGTGGGGCTTGCAGAACTTG+AGG 0.575532 3.1:-86919365 MS.gene014719:intron
TATCTCTACGAAGGTCTGTA+GGG 0.575838 3.1:+86918754 None:intergenic
CTCTTACCATTGGAGGACGT+GGG 0.581384 3.1:-86917994 MS.gene014719:CDS
ATGTGCTTGTAGTCAAACTC+TGG 0.582380 3.1:+86919181 None:intergenic
TGACTACAAGCACATTTGTG+TGG 0.585890 3.1:-86919173 MS.gene014719:CDS
CTGCATGTTGCCGATTAAGT+GGG 0.588376 3.1:+86919101 None:intergenic
GAGGCTCAAGCGACGTGACA+CGG 0.589681 3.1:-86918895 MS.gene014719:CDS
TCCAAGAAAATCATGAACCA+TGG 0.593155 3.1:-86921017 MS.gene014719:CDS
GGCACATACATTGTCAGAGA+AGG 0.595209 3.1:-86918317 MS.gene014719:CDS
CCGGTTCAAGAAGAGAGCAT+TGG 0.595460 3.1:-86917943 MS.gene014719:CDS
TGCTGCAAACACAAGGAAAG+GGG 0.595619 3.1:-86917763 MS.gene014719:CDS
ATTGTTGGTATGATCATCAT+GGG 0.596867 3.1:+86919940 None:intergenic
AAGCAGCCCACGTCCTCCAA+TGG 0.597699 3.1:+86917988 None:intergenic
TCTTCTCCGCAGAAATCACC+AGG 0.602920 3.1:+86918194 None:intergenic
GTACTTCTCTATAAACATAG+AGG 0.603097 3.1:+86919401 None:intergenic
TTACTGTGAGGCTTGAAGAG+TGG 0.603544 3.1:-86918917 MS.gene014719:CDS
GAAAGGGGTTCAGAAGATCA+AGG 0.608216 3.1:-86917748 MS.gene014719:CDS
TGAAAGCTCAACCACAAATG+GGG 0.609916 3.1:-86918252 MS.gene014719:CDS
CCTTGAACTTGGTGACACAA+AGG 0.610919 3.1:+86920750 None:intergenic
ATATCAAATGGAGGAACATG+AGG 0.611454 3.1:-86917868 MS.gene014719:CDS
AGGAACATACACGTCGAACA+AGG 0.613969 3.1:+86918709 None:intergenic
CGGAAGAATGGATGAAACAT+CGG 0.618871 3.1:-86918875 MS.gene014719:CDS
CTGTGAGGCTTGAAGAGTGG+AGG 0.618962 3.1:-86918914 MS.gene014719:CDS
TTAAAGCCTGGTGATTTCTG+CGG 0.622718 3.1:-86918200 MS.gene014719:CDS
GTATGTGCCTTGAGTACTCA+AGG 0.624117 3.1:+86918331 None:intergenic
TACTGGTGTTGTCACAAAGA+CGG 0.626127 3.1:-86919837 MS.gene014719:CDS
TACAAGTGGCTTGCAACTCG+AGG 0.626694 3.1:-86918807 MS.gene014719:CDS
GTCGAACAAGGTCTAAGCAA+AGG 0.636450 3.1:+86918721 None:intergenic
TACCGTCTCGCAATCAACCT+AGG 0.642860 3.1:+86920697 None:intergenic
TATGCTGTAACTTCTTGCTG+TGG 0.643891 3.1:+86918030 None:intergenic
ATTTGCAATCTATTACTGTG+AGG 0.650720 3.1:-86918929 MS.gene014719:CDS
CTCTACGAAGGTCTGTAGGG+AGG 0.651762 3.1:+86918757 None:intergenic
ACAAGCAATATATCAAATGG+AGG 0.655329 3.1:-86917877 MS.gene014719:CDS
GAACAAGGTCTAAGCAAAGG+TGG 0.655527 3.1:+86918724 None:intergenic
GGCGTTGGATATCTCTACGA+AGG 0.660388 3.1:+86918745 None:intergenic
GAAAGCTCAACCACAAATGG+GGG 0.663599 3.1:-86918251 MS.gene014719:CDS
ATCCTAGGTTGATTGCGAGA+CGG 0.665070 3.1:-86920699 MS.gene014719:CDS
GATTGCAGTACTATAAACGA+TGG 0.665132 3.1:-86919537 MS.gene014719:CDS
TGTAGGTCTTAGGGGCATCG+TGG 0.695940 3.1:-86919650 MS.gene014719:intron
GATGAAGAAACAATCCTGAG+AGG 0.719041 3.1:-86918780 MS.gene014719:CDS
TGTTTGAATTCAACAAACTG+CGG 0.754766 3.1:+86917835 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTGATATTATTTACATAT+AGG - chr3.1:86918221-86918240 MS.gene014719:CDS 10.0%
!! ACATTGTAAATAAAATATCT+AGG + chr3.1:86919125-86919144 None:intergenic 15.0%
!! ATAAATCAAAAACAAATGAA+TGG - chr3.1:86918527-86918546 MS.gene014719:intron 15.0%
!! CAAAATCTTGTATTATATAT+TGG + chr3.1:86918456-86918475 None:intergenic 15.0%
!! TATTGTCTCAAAAAAAAAAA+GGG + chr3.1:86918432-86918451 None:intergenic 15.0%
!! TTATTGTCTCAAAAAAAAAA+AGG + chr3.1:86918433-86918452 None:intergenic 15.0%
!!! CTAGCTTTAAATTATAAAAA+AGG + chr3.1:86919084-86919103 None:intergenic 15.0%
!!! TTTTTTCTTGTTCTAATTAA+AGG - chr3.1:86918369-86918388 MS.gene014719:CDS 15.0%
!! AAAAAAAATCCTATACTTGT+AGG - chr3.1:86919148-86919167 MS.gene014719:CDS 20.0%
!! ATTGAGAAAGAAAAAAAACA+AGG + chr3.1:86919498-86919517 None:intergenic 20.0%
!! TTGAGAAAGAAAAAAAACAA+GGG + chr3.1:86919497-86919516 None:intergenic 20.0%
! AAATGTGCATTGTTTATCAA+TGG - chr3.1:86919761-86919780 MS.gene014719:intron 25.0%
! ACCATATAACATCTCTTTAA+GGG + chr3.1:86918787-86918806 None:intergenic 25.0%
! ACTATTATAGTTCAAATGCA+AGG + chr3.1:86920348-86920367 None:intergenic 25.0%
! ACTGAACAAAGATTAATTGT+TGG + chr3.1:86920133-86920152 None:intergenic 25.0%
! ATAGATAAGTTACGTAACAT+TGG + chr3.1:86918408-86918427 None:intergenic 25.0%
! ATGAATGGAATAGTTAGAAA+TGG - chr3.1:86918542-86918561 MS.gene014719:intron 25.0%
! CATCATAAAATTTACTCAGA+GGG + chr3.1:86918339-86918358 None:intergenic 25.0%
! CTGAACAAAGATTAATTGTT+GGG + chr3.1:86920132-86920151 None:intergenic 25.0%
! GAAAAATCATATACAATCTG+GGG + chr3.1:86918933-86918952 None:intergenic 25.0%
! GAAATGTATTCTTAACTACT+TGG - chr3.1:86919256-86919275 MS.gene014719:intron 25.0%
! GATTCAGAAAATTCTTAATC+CGG - chr3.1:86917694-86917713 MS.gene014719:CDS 25.0%
! GGAAAAATCATATACAATCT+GGG + chr3.1:86918934-86918953 None:intergenic 25.0%
! TAAGAACTGAAAATACACAA+AGG + chr3.1:86919611-86919630 None:intergenic 25.0%
! TAATAAGAATTCATCATGCA+TGG - chr3.1:86917949-86917968 MS.gene014719:CDS 25.0%
! TACCATATAACATCTCTTTA+AGG + chr3.1:86918788-86918807 None:intergenic 25.0%
! TAGTTAAGAATACATTTCAC+AGG + chr3.1:86919254-86919273 None:intergenic 25.0%
! TATTCTATCAAAGTCATGTT+TGG + chr3.1:86920309-86920328 None:intergenic 25.0%
! TCATCATAAAATTTACTCAG+AGG + chr3.1:86918340-86918359 None:intergenic 25.0%
! TGAACAAGCAATATATCAAA+TGG - chr3.1:86920935-86920954 MS.gene014719:CDS 25.0%
! TGGAAAAATCATATACAATC+TGG + chr3.1:86918935-86918954 None:intergenic 25.0%
! TTAACTATCTGAGAACTTAA+TGG + chr3.1:86918955-86918974 None:intergenic 25.0%
!! ACCTTAAACTTTTCAAAAGT+TGG + chr3.1:86917776-86917795 None:intergenic 25.0%
!! GTTTTCAACTATGGAATTTT+TGG - chr3.1:86919365-86919384 MS.gene014719:intron 25.0%
!! TGTTTAGTGTGTCTATTTTA+TGG + chr3.1:86918574-86918593 None:intergenic 25.0%
!! TTGTGTATTTTCAGTTCTTA+TGG - chr3.1:86919611-86919630 MS.gene014719:CDS 25.0%
!!! ATGGTTACTGATTTGAATTT+AGG - chr3.1:86917968-86917987 MS.gene014719:CDS 25.0%
!!! TCCAACTTTTGAAAAGTTTA+AGG - chr3.1:86917772-86917791 MS.gene014719:CDS 25.0%
AACAAAGATTAATTGTTGGG+AGG + chr3.1:86920129-86920148 None:intergenic 30.0%
AATCTTATGTTATCAGTCAG+TGG - chr3.1:86918495-86918514 MS.gene014719:intron 30.0%
ACAAGCAATATATCAAATGG+AGG - chr3.1:86920938-86920957 MS.gene014719:CDS 30.0%
ACACAAGTAAAACAGAATCT+AGG - chr3.1:86921005-86921024 MS.gene014719:CDS 30.0%
ACTTGTACTGAACAAATCTT+CGG + chr3.1:86919995-86920014 None:intergenic 30.0%
ATCATCCATTTGTGAGAAAA+AGG + chr3.1:86920427-86920446 None:intergenic 30.0%
ATTGTTGGTATGATCATCAT+GGG + chr3.1:86918878-86918897 None:intergenic 30.0%
ATTTGCAATCTATTACTGTG+AGG - chr3.1:86919886-86919905 MS.gene014719:CDS 30.0%
CAATACAAAACCAAGCAAAT+AGG + chr3.1:86918750-86918769 None:intergenic 30.0%
CACAGTAATAGATTGCAAAT+AGG + chr3.1:86919886-86919905 None:intergenic 30.0%
CACTAAACACAATACAAATG+CGG - chr3.1:86918654-86918673 MS.gene014719:intron 30.0%
GAATTGTTGTCACATGTATT+CGG - chr3.1:86917990-86918009 MS.gene014719:CDS 30.0%
GAGTTATGTTTGAGAACTTA+TGG + chr3.1:86920223-86920242 None:intergenic 30.0%
GATGGTAGATAGAAAAACAA+TGG + chr3.1:86917914-86917933 None:intergenic 30.0%
GTACTTCTCTATAAACATAG+AGG + chr3.1:86919417-86919436 None:intergenic 30.0%
TATTGCTTGTTCATCAATGA+AGG + chr3.1:86920928-86920947 None:intergenic 30.0%
TCATCCATTTGTGAGAAAAA+GGG + chr3.1:86920426-86920445 None:intergenic 30.0%
TCCCTTAAAGAGATGTTATA+TGG - chr3.1:86918783-86918802 MS.gene014719:CDS 30.0%
TGAACATGGTCATAAAGTTT+AGG - chr3.1:86918038-86918057 MS.gene014719:CDS 30.0%
TGTTTGAATTCAACAAACTG+CGG + chr3.1:86920983-86921002 None:intergenic 30.0%
TTAACTGTTCTTGTAGAAGA+AGG + chr3.1:86920690-86920709 None:intergenic 30.0%
! AGTAGCAAAGTTTTCAACTA+TGG - chr3.1:86919356-86919375 MS.gene014719:intron 30.0%
! TAGATTCTGTTTTACTTGTG+TGG + chr3.1:86921006-86921025 None:intergenic 30.0%
!! AGAACTTGAGGTTTGATTTT+AGG - chr3.1:86919462-86919481 MS.gene014719:CDS 30.0%
!! AGATGCTTTTTATCATCAGA+GGG - chr3.1:86920535-86920554 MS.gene014719:intron 30.0%
!! ATATCTTTCTGGAATGGAAA+AGG - chr3.1:86917849-86917868 MS.gene014719:CDS 30.0%
!! GGTATTTGTTGTCAATTGAA+AGG - chr3.1:86919186-86919205 MS.gene014719:CDS 30.0%
!! TAATGCTTGCTTTTCTTTGT+TGG - chr3.1:86918812-86918831 MS.gene014719:CDS 30.0%
!! TATCTTTCTGGAATGGAAAA+GGG - chr3.1:86917850-86917869 MS.gene014719:CDS 30.0%
!! TCTGATGATAAAAAGCATCT+CGG + chr3.1:86920535-86920554 None:intergenic 30.0%
!! TTGAAAACTTTGCTACTTTC+AGG + chr3.1:86919353-86919372 None:intergenic 30.0%
!!! ATTTTTTGAGCCTATTTGCT+TGG - chr3.1:86918737-86918756 MS.gene014719:CDS 30.0%
AACTCTATTACCTTAAAGCC+TGG - chr3.1:86920603-86920622 MS.gene014719:intron 35.0%
AAGAAGAGAATTCTTGATCC+AGG - chr3.1:86917821-86917840 MS.gene014719:CDS 35.0%
AGAAAAAGGGAACCTGTAAT+TGG + chr3.1:86920413-86920432 None:intergenic 35.0%
ATATCAAATGGAGGAACATG+AGG - chr3.1:86920947-86920966 MS.gene014719:CDS 35.0%
ATCCTATACTTGTAGGTCTT+AGG - chr3.1:86919155-86919174 MS.gene014719:CDS 35.0%
CAGAAAATTCTTAATCCGGA+AGG - chr3.1:86917698-86917717 MS.gene014719:CDS 35.0%
CATTGTTGGTATGATCATCA+TGG + chr3.1:86918879-86918898 None:intergenic 35.0%
CTCAATATCTATAGCCTACA+TGG + chr3.1:86919806-86919825 None:intergenic 35.0%
GATTGCAGTACTATAAACGA+TGG - chr3.1:86919278-86919297 MS.gene014719:intron 35.0%
GCAATACTCATAGCTATCTT+AGG - chr3.1:86919677-86919696 MS.gene014719:intron 35.0%
GTGATAGTATGCAAGAACAT+AGG + chr3.1:86917880-86917899 None:intergenic 35.0%
TAAAAGATTGTAAGCAGCTC+CGG + chr3.1:86919010-86919029 None:intergenic 35.0%
TCAAGAATTCTCTTCTTCCA+TGG + chr3.1:86917818-86917837 None:intergenic 35.0%
TCCAAGAAAATCATGAACCA+TGG - chr3.1:86917798-86917817 MS.gene014719:CDS 35.0%
TCCAATGGTAAGAGTAGAAA+CGG + chr3.1:86920815-86920834 None:intergenic 35.0%
TCCTATACTTGTAGGTCTTA+GGG - chr3.1:86919156-86919175 MS.gene014719:CDS 35.0%
TCTCAGATAGTTAAAGCTAC+TGG - chr3.1:86918961-86918980 MS.gene014719:intron 35.0%
TGACTTTCTCTACCAATTAC+AGG - chr3.1:86920398-86920417 MS.gene014719:intron 35.0%
TTGAAAGCTCAACCACAAAT+GGG - chr3.1:86920562-86920581 MS.gene014719:intron 35.0%
TTTGTTGGCAGATTGTGATT+TGG - chr3.1:86918827-86918846 MS.gene014719:CDS 35.0%
! AAGTTCAAGGATTTTCGGAA+GGG - chr3.1:86918078-86918097 MS.gene014719:CDS 35.0%
! ATCTTCTGCTCTAAGTTCAA+AGG + chr3.1:86920733-86920752 None:intergenic 35.0%
! ATGCTACTAATTTTGCCTTC+CGG + chr3.1:86917716-86917735 None:intergenic 35.0%
! GAAGATTTGTTCAGTACAAG+TGG - chr3.1:86919994-86920013 MS.gene014719:intron 35.0%
! GAAGTGATATCTTTCTGGAA+TGG - chr3.1:86917843-86917862 MS.gene014719:CDS 35.0%
! GTTTTTCTATCTACCATCTG+TGG - chr3.1:86917916-86917935 MS.gene014719:CDS 35.0%
! TCACCAAGTTCAAGGATTTT+CGG - chr3.1:86918073-86918092 MS.gene014719:CDS 35.0%
! TCCATGGTTCATGATTTTCT+TGG + chr3.1:86917802-86917821 None:intergenic 35.0%
! TGTTTTCTATCTGCTGAACA+TGG - chr3.1:86918024-86918043 MS.gene014719:CDS 35.0%
! TTAGTTGATATTGCCACAGA+TGG + chr3.1:86917932-86917951 None:intergenic 35.0%
!! AATCAGTACAAGAGCATTGT+TGG + chr3.1:86918893-86918912 None:intergenic 35.0%
!! AGAAGTACCTCTATTGTTTG+TGG - chr3.1:86919429-86919448 MS.gene014719:CDS 35.0%
!! ATAAAAAGCATCTCGGTAAC+TGG + chr3.1:86920528-86920547 None:intergenic 35.0%
!! GAATCTAGGTGTCACTATAT+TGG - chr3.1:86921019-86921038 MS.gene014719:CDS 35.0%
!! GAGATGCTTTTTATCATCAG+AGG - chr3.1:86920534-86920553 MS.gene014719:intron 35.0%
!! GGAGAGAACATTATTTTGCA+CGG + chr3.1:86919396-86919415 None:intergenic 35.0%
!! GGCAAGTTGAGAATAGATTT+TGG + chr3.1:86920669-86920688 None:intergenic 35.0%
!!! GTTTTGTTTGCCCACTTAAT+CGG - chr3.1:86919704-86919723 MS.gene014719:intron 35.0%
ACTCATAGCTATCTTAGGTC+TGG - chr3.1:86919682-86919701 MS.gene014719:intron 40.0%
AGTACCTCTATTGTTTGTGG+TGG - chr3.1:86919432-86919451 MS.gene014719:CDS 40.0%
ATATCTCTACGAAGGTCTGT+AGG + chr3.1:86920065-86920084 None:intergenic 40.0%
ATGTGCTTGTAGTCAAACTC+TGG + chr3.1:86919637-86919656 None:intergenic 40.0%
CCTATACTTGTAGGTCTTAG+GGG - chr3.1:86919157-86919176 MS.gene014719:CDS 40.0%
CGGAAGAATGGATGAAACAT+CGG - chr3.1:86919940-86919959 MS.gene014719:CDS 40.0%
CTTCCGAAAATCCTTGAACT+TGG + chr3.1:86918079-86918098 None:intergenic 40.0%
CTTGAAAGCTCAACCACAAA+TGG - chr3.1:86920561-86920580 MS.gene014719:intron 40.0%
GACTACAAGCACATTTGTGT+GGG - chr3.1:86919643-86919662 MS.gene014719:CDS 40.0%
GATGAAGAAACAATCCTGAG+AGG - chr3.1:86920035-86920054 MS.gene014719:intron 40.0%
GCGAATACTACTTCTGTGTT+TGG - chr3.1:86919317-86919336 MS.gene014719:intron 40.0%
GCTTAGAGACAACTTCATAG+TGG - chr3.1:86918273-86918292 MS.gene014719:CDS 40.0%
GTACCTCTATTGTTTGTGGT+GGG - chr3.1:86919433-86919452 MS.gene014719:CDS 40.0%
GTATCATCCTTGAGTACTCA+AGG - chr3.1:86920477-86920496 MS.gene014719:intron 40.0%
GTTTCTACTCTTACCATTGG+AGG - chr3.1:86920814-86920833 MS.gene014719:CDS 40.0%
TACCTCTATTGTTTGTGGTG+GGG - chr3.1:86919434-86919453 MS.gene014719:CDS 40.0%
TATCTCTACGAAGGTCTGTA+GGG + chr3.1:86920064-86920083 None:intergenic 40.0%
TATGCTGTAACTTCTTGCTG+TGG + chr3.1:86920788-86920807 None:intergenic 40.0%
TCAAGAACAAGCTTCCATGT+AGG - chr3.1:86919789-86919808 MS.gene014719:CDS 40.0%
TCCAGAAAGATATCACTTCC+TGG + chr3.1:86917842-86917861 None:intergenic 40.0%
TCCAGGAAGTGATATCTTTC+TGG - chr3.1:86917838-86917857 MS.gene014719:CDS 40.0%
TCCGTTTCTACTCTTACCAT+TGG - chr3.1:86920811-86920830 MS.gene014719:CDS 40.0%
TGAAAGCTCAACCACAAATG+GGG - chr3.1:86920563-86920582 MS.gene014719:intron 40.0%
TGACTACAAGCACATTTGTG+TGG - chr3.1:86919642-86919661 MS.gene014719:CDS 40.0%
TGGTAGAGAAAGTCATGACA+TGG + chr3.1:86920393-86920412 None:intergenic 40.0%
TTAAAGCCTGGTGATTTCTG+CGG - chr3.1:86920615-86920634 MS.gene014719:intron 40.0%
TTGCTGCAAACACAAGGAAA+GGG - chr3.1:86921051-86921070 MS.gene014719:CDS 40.0%
TTTGCTGCAAACACAAGGAA+AGG - chr3.1:86921050-86921069 MS.gene014719:CDS 40.0%
! AGTTCAAGGATTTTCGGAAG+GGG - chr3.1:86918079-86918098 MS.gene014719:CDS 40.0%
! CAAGTTCAAGGATTTTCGGA+AGG - chr3.1:86918077-86918096 MS.gene014719:CDS 40.0%
! CAGCTACTTACGACTTGTTT+CGG - chr3.1:86920169-86920188 MS.gene014719:intron 40.0%
! GGTTCCCTTTTTCTCACAAA+TGG - chr3.1:86920419-86920438 MS.gene014719:intron 40.0%
! TCTTCAGGCTTTTGCAACTT+GGG + chr3.1:86921104-86921123 None:intergenic 40.0%
!! CAAGATTTGCTGCAAACACA+AGG - chr3.1:86921045-86921064 MS.gene014719:CDS 40.0%
!! CTTGTTTCATTCAGGTTGCT+TGG - chr3.1:86920847-86920866 MS.gene014719:CDS 40.0%
!! TACTGGTGTTGTCACAAAGA+CGG - chr3.1:86918978-86918997 MS.gene014719:intron 40.0%
ACACGCTCTCTCAGAAATTG+TGG + chr3.1:86919972-86919991 None:intergenic 45.0%
AGGAACATACACGTCGAACA+AGG + chr3.1:86920109-86920128 None:intergenic 45.0%
AGTTGCTGATCTAGTACCTG+GGG + chr3.1:86918190-86918209 None:intergenic 45.0%
ATCTGGGGACATATTGAAGC+AGG + chr3.1:86918918-86918937 None:intergenic 45.0%
CACGCTCTCTCAGAAATTGT+GGG + chr3.1:86919971-86919990 None:intergenic 45.0%
CAGTTGCTGATCTAGTACCT+GGG + chr3.1:86918191-86918210 None:intergenic 45.0%
CCAATGCTCTCTTCTTGAAC+CGG + chr3.1:86920875-86920894 None:intergenic 45.0%
CCCCTAAGACCTACAAGTAT+AGG + chr3.1:86919160-86919179 None:intergenic 45.0%
CCTTTGTGTCACCAAGTTCA+AGG - chr3.1:86918065-86918084 MS.gene014719:CDS 45.0%
CGGAGAAGAGTTACTTGCTT+GGG - chr3.1:86920635-86920654 MS.gene014719:intron 45.0%
GAAAGCTCAACCACAAATGG+GGG - chr3.1:86920564-86920583 MS.gene014719:intron 45.0%
GAAAGGGGTTCAGAAGATCA+AGG - chr3.1:86921067-86921086 MS.gene014719:CDS 45.0%
GAACAAGGTCTAAGCAAAGG+TGG + chr3.1:86920094-86920113 None:intergenic 45.0%
GCAGAAATCACCAGGCTTTA+AGG + chr3.1:86920616-86920635 None:intergenic 45.0%
GCAGTGCAGCAAAAAGATCT+AGG + chr3.1:86918162-86918181 None:intergenic 45.0%
GGCACATACATTGTCAGAGA+AGG - chr3.1:86920498-86920517 MS.gene014719:intron 45.0%
GTATGTGCCTTGAGTACTCA+AGG + chr3.1:86920487-86920506 None:intergenic 45.0%
GTCGAACAAGGTCTAAGCAA+AGG + chr3.1:86920097-86920116 None:intergenic 45.0%
GTGAACTTGTCATGGATCCT+AGG - chr3.1:86918101-86918120 MS.gene014719:CDS 45.0%
TCAGTTGCTGATCTAGTACC+TGG + chr3.1:86918192-86918211 None:intergenic 45.0%
TCATGGGAGCTTCTAATTGC+TGG + chr3.1:86918862-86918881 None:intergenic 45.0%
TGATGCAATATGCGAGCGAT+TGG - chr3.1:86920455-86920474 MS.gene014719:intron 45.0%
TGCTGCAAACACAAGGAAAG+GGG - chr3.1:86921052-86921071 MS.gene014719:CDS 45.0%
TGTTGTCACAAAGACGGCTT+GGG - chr3.1:86918984-86919003 MS.gene014719:intron 45.0%
TTACTGTGAGGCTTGAAGAG+TGG - chr3.1:86919898-86919917 MS.gene014719:CDS 45.0%
! CCTTGAACTTGGTGACACAA+AGG + chr3.1:86918068-86918087 None:intergenic 45.0%
! CTCTTCAGGCTTTTGCAACT+TGG + chr3.1:86921105-86921124 None:intergenic 45.0%
! CTGCATGTTGCCGATTAAGT+GGG + chr3.1:86919717-86919736 None:intergenic 45.0%
! GGCAAGTAGTCTTAGCTTGA+GGG - chr3.1:86920893-86920912 MS.gene014719:CDS 45.0%
! TGCATAAAGCTCTAGCCTAG+TGG + chr3.1:86918700-86918719 None:intergenic 45.0%
! TGCGAGACGGTATTTGAGAT+CGG - chr3.1:86918129-86918148 MS.gene014719:CDS 45.0%
! TGGCAAGTAGTCTTAGCTTG+AGG - chr3.1:86920892-86920911 MS.gene014719:CDS 45.0%
! TTGAAAGGCATGCTACTTGC+TGG - chr3.1:86919201-86919220 MS.gene014719:intron 45.0%
!! ATCCTAGGTTGATTGCGAGA+CGG - chr3.1:86918116-86918135 MS.gene014719:CDS 45.0%
ACTCTTACCATTGGAGGACG+TGG - chr3.1:86920820-86920839 MS.gene014719:CDS 50.0%
AGCCCCACCACAAACAATAG+AGG + chr3.1:86919439-86919458 None:intergenic 50.0%
CCACTTAATCGGCAACATGC+AGG - chr3.1:86919715-86919734 MS.gene014719:intron 50.0%
CTCTTACCATTGGAGGACGT+GGG - chr3.1:86920821-86920840 MS.gene014719:CDS 50.0%
GCCTGAAGAGCCAGATTTCT+CGG - chr3.1:86921115-86921134 MS.gene014719:CDS 50.0%
GCGGAGAAGAGTTACTTGCT+TGG - chr3.1:86920634-86920653 MS.gene014719:intron 50.0%
GTGTTGTCACAAAGACGGCT+TGG - chr3.1:86918983-86919002 MS.gene014719:intron 50.0%
TACCGTCTCGCAATCAACCT+AGG + chr3.1:86918121-86918140 None:intergenic 50.0%
TCAGGCTCTACCGAGAAATC+TGG + chr3.1:86921128-86921147 None:intergenic 50.0%
TCTTCTCCGCAGAAATCACC+AGG + chr3.1:86920624-86920643 None:intergenic 50.0%
TGATCTAGTACCTGGGGAAG+TGG + chr3.1:86918184-86918203 None:intergenic 50.0%
! CCGGTTCAAGAAGAGAGCAT+TGG - chr3.1:86920872-86920891 MS.gene014719:CDS 50.0%
! CCTGCATGTTGCCGATTAAG+TGG + chr3.1:86919718-86919737 None:intergenic 50.0%
! GGCGTTGGATATCTCTACGA+AGG + chr3.1:86920073-86920092 None:intergenic 50.0%
! GTGGGCTGCTTGTTTCATTC+AGG - chr3.1:86920839-86920858 MS.gene014719:CDS 50.0%
! TACAAGTGGCTTGCAACTCG+AGG - chr3.1:86920008-86920027 MS.gene014719:intron 50.0%
!! ACCGAGAAATCTGGCTCTTC+AGG + chr3.1:86921119-86921138 None:intergenic 50.0%
ACCACAAATGGGGGCAGAAC+TGG - chr3.1:86920573-86920592 MS.gene014719:intron 55.0%
ACCAGTTCTGCCCCCATTTG+TGG + chr3.1:86920577-86920596 None:intergenic 55.0%
ACGATGGTGATCGCGTGAAG+TGG - chr3.1:86919294-86919313 MS.gene014719:intron 55.0%
AGCGACGTGACACGGAAGAA+TGG - chr3.1:86919928-86919947 MS.gene014719:CDS 55.0%
CCTAGTGGTCACTCGCATTC+AGG + chr3.1:86918685-86918704 None:intergenic 55.0%
CCTGAATGCGAGTGACCACT+AGG - chr3.1:86918682-86918701 MS.gene014719:intron 55.0%
CGATGGTGATCGCGTGAAGT+GGG - chr3.1:86919295-86919314 MS.gene014719:intron 55.0%
CGGAAGGGGTGAACTTGTCA+TGG - chr3.1:86918093-86918112 MS.gene014719:CDS 55.0%
CTCTACGAAGGTCTGTAGGG+AGG + chr3.1:86920061-86920080 None:intergenic 55.0%
CTGTGAGGCTTGAAGAGTGG+AGG - chr3.1:86919901-86919920 MS.gene014719:CDS 55.0%
GGTCTAAGCAAAGGTGGCGT+TGG + chr3.1:86920088-86920107 None:intergenic 55.0%
!! TCATTCAGGTTGCTTGGCGC+CGG - chr3.1:86920853-86920872 MS.gene014719:CDS 55.0%
!! TGTAGGTCTTAGGGGCATCG+TGG - chr3.1:86919165-86919184 MS.gene014719:CDS 55.0%
AAGCAGCCCACGTCCTCCAA+TGG + chr3.1:86920830-86920849 None:intergenic 60.0%
GAGGCTCAAGCGACGTGACA+CGG - chr3.1:86919920-86919939 MS.gene014719:CDS 60.0%
GGTGGGGCTTGCAGAACTTG+AGG - chr3.1:86919450-86919469 MS.gene014719:CDS 60.0%
! GTCACAAAGACGGCTTGGGC+CGG - chr3.1:86918988-86919007 MS.gene014719:intron 60.0%
GGTCTGTAGGGAGGCCTCTC+AGG + chr3.1:86920052-86920071 None:intergenic 65.0%
! TGCTGCACTGCCACTTCCCC+AGG - chr3.1:86918171-86918190 MS.gene014719:CDS 65.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 86917680 86921157 86917680 ID=MS.gene014719
chr3.1 mRNA 86917680 86921157 86917680 ID=MS.gene014719.t1;Parent=MS.gene014719
chr3.1 exon 86920645 86921157 86920645 ID=MS.gene014719.t1.exon1;Parent=MS.gene014719.t1
chr3.1 CDS 86920645 86921157 86920645 ID=cds.MS.gene014719.t1;Parent=MS.gene014719.t1
chr3.1 exon 86919787 86919999 86919787 ID=MS.gene014719.t1.exon2;Parent=MS.gene014719.t1
chr3.1 CDS 86919787 86919999 86919787 ID=cds.MS.gene014719.t1;Parent=MS.gene014719.t1
chr3.1 exon 86919366 86919667 86919366 ID=MS.gene014719.t1.exon3;Parent=MS.gene014719.t1
chr3.1 CDS 86919366 86919667 86919366 ID=cds.MS.gene014719.t1;Parent=MS.gene014719.t1
chr3.1 exon 86919101 86919212 86919101 ID=MS.gene014719.t1.exon4;Parent=MS.gene014719.t1
chr3.1 CDS 86919101 86919212 86919101 ID=cds.MS.gene014719.t1;Parent=MS.gene014719.t1
chr3.1 exon 86918719 86918955 86918719 ID=MS.gene014719.t1.exon5;Parent=MS.gene014719.t1
chr3.1 CDS 86918719 86918955 86918719 ID=cds.MS.gene014719.t1;Parent=MS.gene014719.t1
chr3.1 exon 86917680 86918417 86917680 ID=MS.gene014719.t1.exon6;Parent=MS.gene014719.t1
chr3.1 CDS 86917680 86918417 86917680 ID=cds.MS.gene014719.t1;Parent=MS.gene014719.t1
Gene Sequence

>MS.gene014719

ATGTCAGTTTACAAGATTCAGAAAATTCTTAATCCGGAAGGCAAAATTAGTAGCATTGTTGATACTGATAAGAATAGAATGAATATCAAATTTCCAACTTTTGAAAAGTTTAAGGTTTTCCAAGAAAATCATGAACCATGGAAGAAGAGAATTCTTGATCCAGGAAGTGATATCTTTCTGGAATGGAAAAGGGCTTTCCTATGTTCTTGCATACTATCACTATTTGTTGATCCATTGTTTTTCTATCTACCATCTGTGGCAATATCAACTAATAAGAATTCATCATGCATGGTTACTGATTTGAATTTAGGAATTGTTGTCACATGTATTCGGACATTTGCTGATGTTTTCTATCTGCTGAACATGGTCATAAAGTTTAGGACAGCCTTTGTGTCACCAAGTTCAAGGATTTTCGGAAGGGGTGAACTTGTCATGGATCCTAGGTTGATTGCGAGACGGTATTTGAGATCGGAGTTTTTCCTAGATCTTTTTGCTGCACTGCCACTTCCCCAGGTACTAGATCAGCAACTGAAGATACTGTTATTGATATTATTTACATATAGGAAATTTAAAACTATCAATATTTTGTTTATGCTTAGAGACAACTTCATAGTGGCATGAATTGTGAAACAGTTTAAGTTTTAGTAGTTTTAATACCCTCTGAGTAAATTTTATGATGAAATAGATTTTTTTTTCTTGTTCTAATTAAAGGTATTAATAGAATGCCAATGTTACGTAACTTATCTATTCCCTTTTTTTTTTTGAGACAATAACCAATATATAATACAAGATTTTGTAGTAATATTTTTTTAACAAATCTTATGTTATCAGTCAGTGGCTACAAATTATAAATCAAAAACAAATGAATGGAATAGTTAGAAATGGAAGTGACCATAAAATAGACACACTAAACACAATCTTATCTTATTTTAAATTGAAACGAATATTATACAATGAATGACATAAAATAGACACACTAAACACAATACAAATGCGGATAAACCTGAATGCGAGTGACCACTAGGCTAGAGCTTTATGCAACAAGCAATTCATACACATTTTTTGAGCCTATTTGCTTGGTTTTGTATTGTCTTTATATTTTGTCCCTTAAAGAGATGTTATATGGTATTGTTAATGCTTGCTTTTCTTTGTTGGCAGATTGTGATTTGGTTTATTATGCCAGCAATTAGAAGCTCCCATGATGATCATACCAACAATGCTCTTGTACTGATTGTCCTGCTTCAATATGTCCCCAGATTGTATATGATTTTTCCATTAAGTTCTCAGATAGTTAAAGCTACTGGTGTTGTCACAAAGACGGCTTGGGCCGGAGCTGCTTACAATCTTTTACTTTACATGTTAGCAAGTCATGTATGTTGAGTTTTCTTCAATCACAAGTTTCCTTTTTTATAATTTAAAGCTAGTTCTCATCTCTCAGCATTCCTAGATATTTTATTTACAATGTTAGAAAAAAAATCCTATACTTGTAGGTCTTAGGGGCATCGTGGTATTTGTTGTCAATTGAAAGGCATGCTACTTGCTGGAAATCTGAATGCAGAAATGAAAACTTACCTGTGAAATGTATTCTTAACTACTTGGATTGCAGTACTATAAACGATGGTGATCGCGTGAAGTGGGCGAATACTACTTCTGTGTTTGGTAACTGCAATCCTGAAAGTAGCAAAGTTTTCAACTATGGAATTTTTGGAAATGCCGTGCAAAATAATGTTCTCTCCTCTATGTTTATAGAGAAGTACCTCTATTGTTTGTGGTGGGGCTTGCAGAACTTGAGGTTTGATTTTAGGATTTGTTATCCCTTGTTTTTTTTCTTTCTCAATTATCTTTCTTTAGAGATGAATACTTGACATGAAAGTTAGTTGTGCATCACATTTTTTTATTTATTCACATTCACATTTTACTAATCTCTTCCTTTGTGTATTTTCAGTTCTTATGGCCAGAGTTTGACTACAAGCACATTTGTGTGGGAAACTGCATTTGCAATACTCATAGCTATCTTAGGTCTGGTTTTGTTTGCCCACTTAATCGGCAACATGCAGGTAATTTGAATTTTCAAATCTTCAAAATGTGCATTGTTTATCAATGGTCTTGTCAAGAACAAGCTTCCATGTAGGCTATAGATATTGAGATGTTTCAATCTTATTGAAATGTTGTGTGTATATAAGCATGCTCAACTCAACGCAGACCTATTTGCAATCTATTACTGTGAGGCTTGAAGAGTGGAGGCTCAAGCGACGTGACACGGAAGAATGGATGAAACATCGGCAACTCCCACAATTTCTGAGAGAGCGTGTCCGAAGATTTGTTCAGTACAAGTGGCTTGCAACTCGAGGTGTTGATGAAGAAACAATCCTGAGAGGCCTCCCTACAGACCTTCGTAGAGATATCCAACGCCACCTTTGCTTAGACCTTGTTCGACGTGTATGTTCCTCCCAACAATTAATCTTTGTTCAGTTGATTTGTCATTTTCTCAGCTACTTACGACTTGTTTCGGAGAGCTTATGAAACAACTTATGTCATGTCCATAAGTTCTCAAACATAACTCACGAAAACAACTTATAGTTCAAAACAGTTTCTTATGCTATAAGCGATTAATTAAGTTGTTTATCCAAACATGACTTTGATAGAATAGTTGTTATAATAGTTTCCTTGCATTTGAACTATAATAGTTTATTGAAGTTTATGACACACACCATGTCATGACTTTCTCTACCAATTACAGGTTCCCTTTTTCTCACAAATGGATGATCAACTACTTGATGCAATATGCGAGCGATTGGTATCATCCTTGAGTACTCAAGGCACATACATTGTCAGAGAAGGAGATCCAGTTACCGAGATGCTTTTTATCATCAGAGGGAGACTTGAAAGCTCAACCACAAATGGGGGCAGAACTGGTTTCTTTAACTCTATTACCTTAAAGCCTGGTGATTTCTGCGGAGAAGAGTTACTTGCTTGGGCATTGCTTCCAAAATCTATTCTCAACTTGCCTTCTTCTACAAGAACAGTTAAAGCTCTTGTTGAAGTTGAAGCCTTTGAACTTAGAGCAGAAGATCTTAAATTTGTCGCAAATCAGTTTCGACGTCTCCACAGCAAGAAGTTACAGCATACATTCCGTTTCTACTCTTACCATTGGAGGACGTGGGCTGCTTGTTTCATTCAGGTTGCTTGGCGCCGGTTCAAGAAGAGAGCATTGGCAAGTAGTCTTAGCTTGAGGGAATACAAGTCCTTCATTGATGAACAAGCAATATATCAAATGGAGGAACATGAGGAAGAAGAGCACCGCAGTTTGTTGAATTCAAACACCACACAAGTAAAACAGAATCTAGGTGTCACTATATTGGCTTCAAGATTTGCTGCAAACACAAGGAAAGGGGTTCAGAAGATCAAGGATGCAGAGATGCCCAAGTTGCAAAAGCCTGAAGAGCCAGATTTCTCGGTAGAGCCTGAAGATGATTAA
Protein sequence

>MS.gene014719.t1

MSVYKIQKILNPEGKISSIVDTDKNRMNIKFPTFEKFKVFQENHEPWKKRILDPGSDIFLEWKRAFLCSCILSLFVDPLFFYLPSVAISTNKNSSCMVTDLNLGIVVTCIRTFADVFYLLNMVIKFRTAFVSPSSRIFGRGELVMDPRLIARRYLRSEFFLDLFAALPLPQIVIWFIMPAIRSSHDDHTNNALVLIVLLQYVPRLYMIFPLSSQIVKATGVVTKTAWAGAAYNLLLYMLASHVLGASWYLLSIERHATCWKSECRNENLPVKCILNYLDCSTINDGDRVKWANTTSVFGNCNPESSKVFNYGIFGNAVQNNVLSSMFIEKYLYCLWWGLQNLSSYGQSLTTSTFVWETAFAILIAILGLVLFAHLIGNMQTYLQSITVRLEEWRLKRRDTEEWMKHRQLPQFLRERVRRFVQYKWLATRGVDEETILRGLPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLSTQGTYIVREGDPVTEMLFIIRGRLESSTTNGGRTGFFNSITLKPGDFCGEELLAWALLPKSILNLPSSTRTVKALVEVEAFELRAEDLKFVANQFRRLHSKKLQHTFRFYSYHWRTWAACFIQVAWRRFKKRALASSLSLREYKSFIDEQAIYQMEEHEEEEHRSLLNSNTTQVKQNLGVTILASRFAANTRKGVQKIKDAEMPKLQKPEEPDFSVEPEDD