AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene014846

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene014846.t1 MTR_3g106900 99.064 641 6 0 1 641 1 641 0.0 1313
MS.gene014846.t1 MTR_4g114960 57.231 650 220 11 1 641 1 601 0.0 746
MS.gene014846.t1 MTR_2g008170 45.963 644 275 11 1 618 1 597 3.44e-169 496
MS.gene014846.t1 MTR_8g008860 44.038 629 289 12 1 618 1 577 7.22e-166 487
MS.gene014846.t1 MTR_3g080490 43.503 354 151 5 4 357 3 307 2.86e-95 313
MS.gene014846.t1 MTR_2g037980 34.540 359 178 8 2 355 3 309 1.35e-59 210
MS.gene014846.t1 MTR_4g127440 30.169 590 316 13 2 577 3 510 5.40e-59 208
MS.gene014846.t1 MTR_4g115420 46.053 152 79 2 2 151 5 155 5.74e-38 148
MS.gene014846.t1 MTR_4g115420 28.493 365 199 9 227 577 172 488 7.56e-28 118
MS.gene014846.t1 MTR_8g106040 26.629 353 203 6 6 353 5 306 3.24e-33 133
MS.gene014846.t1 MTR_0530s0020 26.606 327 178 6 32 355 17 284 3.54e-30 125
MS.gene014846.t1 MTR_6g059380 34.437 151 95 1 4 150 7 157 6.14e-19 90.9
MS.gene014846.t1 MTR_1g033880 35.570 149 82 4 7 149 8 148 2.98e-17 84.7
MS.gene014846.t1 MTR_8g089850 30.220 182 117 5 1 178 1 176 8.03e-16 79.3
MS.gene014846.t1 MTR_3g086670 33.333 147 93 3 6 150 5 148 1.39e-15 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene014846.t1 AT2G25430 74.887 661 124 15 5 638 4 649 0.0 898
MS.gene014846.t1 AT4G32285 72.430 642 155 10 5 638 4 631 0.0 867
MS.gene014846.t1 AT4G32285 72.430 642 155 10 5 638 4 631 0.0 867
MS.gene014846.t1 AT1G03050 45.609 649 255 14 1 610 1 590 0.0 533
MS.gene014846.t1 AT4G02650 44.665 656 281 15 1 626 1 604 4.92e-164 483
MS.gene014846.t1 AT1G05020 40.199 403 180 6 4 400 3 350 5.81e-96 308
MS.gene014846.t1 AT4G25940 31.954 604 300 18 2 572 3 528 2.20e-72 245
MS.gene014846.t1 AT1G14910 33.645 535 262 18 2 514 3 466 1.43e-70 242
MS.gene014846.t1 AT1G14910 33.271 535 259 19 2 514 3 461 7.72e-67 232
MS.gene014846.t1 AT2G01600 30.146 617 309 19 2 594 3 521 7.01e-65 224
MS.gene014846.t1 AT5G57200 34.722 360 175 8 2 355 3 308 8.77e-62 216
MS.gene014846.t1 AT5G35200 43.333 150 82 2 6 153 11 159 1.80e-34 138
MS.gene014846.t1 AT5G35200 28.212 358 202 11 227 575 174 485 7.39e-24 106
MS.gene014846.t1 AT5G35200 43.333 150 82 2 6 153 11 159 1.80e-34 138
MS.gene014846.t1 AT5G35200 28.212 358 202 11 227 575 174 485 7.39e-24 106
MS.gene014846.t1 AT1G68110 26.836 354 186 11 7 353 5 292 1.88e-18 88.2
MS.gene014846.t1 AT1G33340 35.099 151 92 2 3 150 6 153 1.16e-17 85.9
MS.gene014846.t1 AT4G40080 34.014 147 91 4 10 150 11 157 1.08e-15 79.7
MS.gene014846.t1 AT1G25240 35.811 148 81 5 7 148 5 144 1.86e-15 79.0
MS.gene014846.t1 AT1G25240 35.811 148 81 5 7 148 6 145 1.93e-15 79.0

Find 210 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTTCCTCTCTGGACTCTT+TGG 0.225582 3.3:-87651274 None:intergenic
TGCTAGCAGTGTGGCGTTGC+CGG 0.225948 3.3:+87651774 MS.gene014846:CDS
CTAGTAATTCTTTGAACTTC+CGG 0.266921 3.3:-87651202 None:intergenic
TCAGGCTCTGGTGGAGGTGG+CGG 0.270903 3.3:-87651385 None:intergenic
TTCTTGGCTTGTAGGCCAAC+TGG 0.276217 3.3:+87650938 MS.gene014846:CDS
GGAGGTCCCATTCCATGAAC+TGG 0.286179 3.3:-87652072 None:intergenic
GAGTCATTTGCAGAGGCTTT+TGG 0.294432 3.3:+87650910 MS.gene014846:CDS
TGGATCGTTTCTTGGCTTGT+AGG 0.296888 3.3:+87650930 MS.gene014846:CDS
TGCACAGATCCATCTGGGGC+TGG 0.298625 3.3:-87651832 None:intergenic
ATACATGCCATTCAACAATA+AGG 0.303811 3.3:-87651698 None:intergenic
ATGAGGCTCATTCAAGTTCT+TGG 0.306921 3.3:+87650573 MS.gene014846:CDS
CAGGCTCTGGTGGAGGTGGC+GGG 0.310633 3.3:-87651384 None:intergenic
TCCTCCGTAAACTGCGGTTT+TGG 0.326695 3.3:-87651415 None:intergenic
AAGAATTACTAGTAAGTTGT+TGG 0.329377 3.3:+87651213 MS.gene014846:CDS
CAAACCCCTGCAGCTGAACC+TGG 0.330516 3.3:+87651592 MS.gene014846:CDS
TTTGCGTTGGCACTCTTTGC+TGG 0.331820 3.3:+87651490 MS.gene014846:CDS
TCTAGGCAGAAGAATGCTTT+AGG 0.335417 3.3:+87651661 MS.gene014846:CDS
ACAGGTGTTGTGGTCTTTCC+CGG 0.343337 3.3:-87651799 None:intergenic
GGTAGTGTTGGTGGTGGTGG+TGG 0.343928 3.3:+87650674 MS.gene014846:CDS
TGCCAAGCTGAAGTTACTTC+CGG 0.346193 3.3:-87651571 None:intergenic
GTGGGAGAGAAAATAATTTC+AGG 0.350857 3.3:+87650717 MS.gene014846:CDS
ACAAGAGGAGGAGCCGGTTC+AGG 0.352668 3.3:+87651318 MS.gene014846:CDS
TGCTGATATATGCGAGGTTT+TGG 0.359618 3.3:+87651030 MS.gene014846:CDS
TCAGGCTCAGGCTCTGGTGG+AGG 0.361839 3.3:-87651391 None:intergenic
TTGTTGCTTCTTCTCCATTT+CGG 0.363887 3.3:-87651920 None:intergenic
CAGTGTGGCGTTGCCGGGAC+CGG 0.367032 3.3:+87651780 MS.gene014846:CDS
GGAGCTTCCTCTTTCCTCTC+TGG 0.367047 3.3:-87651283 None:intergenic
GGCGAGATCCTCCGAGTATC+CGG 0.368486 3.3:+87651183 MS.gene014846:CDS
GCTGGTAGTGTTGGTGGTGG+TGG 0.373659 3.3:+87650671 MS.gene014846:CDS
TGCAGTCACTGCAGACGATC+AGG 0.373792 3.3:+87651459 MS.gene014846:CDS
TGTCGGGGAATGATGATAGA+AGG 0.374281 3.3:+87650831 MS.gene014846:CDS
GGCTCAGGCTCTGGTGGAGG+TGG 0.378487 3.3:-87651388 None:intergenic
GAGCAACATGGCGCCGGAAT+TGG 0.378632 3.3:+87650271 MS.gene014846:CDS
ATCTGTGCAGCCAGTTAATC+AGG 0.381955 3.3:+87651846 MS.gene014846:CDS
TGCATTGTATCCGTTGGTTA+AGG 0.382273 3.3:+87650991 MS.gene014846:CDS
TCAAAGGCCTTCACACAATC+AGG 0.395986 3.3:-87651088 None:intergenic
TTTGGCTCAGGCTCAGGCTC+TGG 0.396279 3.3:-87651397 None:intergenic
GCTTTCCCAGGTTCAGCTGC+AGG 0.404670 3.3:-87651598 None:intergenic
ATAATCTCTTCCTGGAAAAT+CGG 0.405006 3.3:-87650500 None:intergenic
TCAGCTGTGTCCAAGCGATT+GGG 0.406593 3.3:+87650407 MS.gene014846:CDS
CTTCTGCCTAGATAAATTGC+TGG 0.406648 3.3:-87651650 None:intergenic
CTGGGTTGGCTAAGAACAAT+AGG 0.407625 3.3:+87650957 MS.gene014846:CDS
TAGCATACATAATCTCTTCC+TGG 0.407692 3.3:-87650508 None:intergenic
ACTTCCGGCTGTCCATTTGA+TGG 0.408563 3.3:-87651556 None:intergenic
TATGGAGGTGGACAATTTAG+AGG 0.412015 3.3:+87650761 MS.gene014846:CDS
CTTTCCCAGGTTCAGCTGCA+GGG 0.412658 3.3:-87651597 None:intergenic
CTTGATCCCTTATTGTTGAA+TGG 0.413257 3.3:+87651691 MS.gene014846:CDS
GTTGTGGTCTTTCCCGGTCC+CGG 0.413441 3.3:-87651793 None:intergenic
GCGAACGGATCCTGATTAAC+TGG 0.416129 3.3:-87651856 None:intergenic
CTATGTGCAAATGGCCGAAA+TGG 0.416745 3.3:+87651906 MS.gene014846:CDS
CCGGCTAATAATAATGCAAA+TGG 0.417868 3.3:+87651517 MS.gene014846:CDS
TGGGAAGCCTTTCCATCAAA+TGG 0.420108 3.3:+87651544 MS.gene014846:CDS
GATTGGGGAAGACGCGTGAT+TGG 0.420367 3.3:+87650423 MS.gene014846:CDS
TTCAGCTGTGTCCAAGCGAT+TGG 0.424563 3.3:+87650406 MS.gene014846:CDS
ACAATCGCCACCTCCAATTC+CGG 0.424606 3.3:-87650284 None:intergenic
GCACAGATCCATCTGGGGCT+GGG 0.426777 3.3:-87651831 None:intergenic
TCCTCTTGTACTTCCAGCTT+AGG 0.430283 3.3:-87651304 None:intergenic
TGAGCCAAAACCGCAGTTTA+CGG 0.430872 3.3:+87651411 MS.gene014846:CDS
CCACCGAATGAGTATGAGTA+TGG 0.432260 3.3:+87650743 MS.gene014846:CDS
TGAACCTGGGAAAGCGGATT+GGG 0.433469 3.3:+87651606 MS.gene014846:CDS
ATCTCGTTCATATCCTGAAC+CGG 0.433714 3.3:-87651331 None:intergenic
ACTGGCTGCACAGATCCATC+TGG 0.435637 3.3:-87651838 None:intergenic
TTGTTACTGTGACTCCTTTG+AGG 0.437358 3.3:+87650855 MS.gene014846:CDS
AACAAAATGAACAATGGTAC+TGG 0.437938 3.3:+87652012 MS.gene014846:CDS
GCTAGCAGTGTGGCGTTGCC+GGG 0.438220 3.3:+87651775 MS.gene014846:CDS
CGGCTGTCCATTTGATGGAA+AGG 0.439223 3.3:-87651551 None:intergenic
TGAGGCTCATTCAAGTTCTT+GGG 0.442141 3.3:+87650574 MS.gene014846:CDS
AGCGGATTGGGAACTGGCAT+TGG 0.444215 3.3:+87651618 MS.gene014846:CDS
TACAATTGGTGTAAAGAAAG+TGG 0.445885 3.3:+87651157 MS.gene014846:CDS
GGCTCAGGCTCAGGCTCTGG+TGG 0.448716 3.3:-87651394 None:intergenic
ACCTCCCTCCTATGTGCAAA+TGG 0.449011 3.3:+87651897 MS.gene014846:CDS
TGGAGGAGTTTGTGAGGGAT+AGG 0.450640 3.3:+87651242 MS.gene014846:CDS
GGCACTCTTTGCTGGTGCAC+CGG 0.450777 3.3:+87651498 MS.gene014846:CDS
TACATGCCATTCAACAATAA+GGG 0.450802 3.3:-87651697 None:intergenic
AATGGTACTGGATACTATGC+TGG 0.457007 3.3:+87652024 MS.gene014846:CDS
TGGGAAAGCGGATTGGGAAC+TGG 0.460427 3.3:+87651612 MS.gene014846:CDS
AGACAGCCAGCAATTTATCT+AGG 0.466153 3.3:+87651644 MS.gene014846:CDS
GTGAGCACTTCCCAACTTAG+TGG 0.466638 3.3:+87651745 MS.gene014846:CDS
GGCTTGTAGGCCAACTGGGT+TGG 0.467428 3.3:+87650943 MS.gene014846:CDS
AGCACTCCCTCCACTAAGTT+GGG 0.468854 3.3:-87651755 None:intergenic
CTGAACCTGGGAAAGCGGAT+TGG 0.473866 3.3:+87651605 MS.gene014846:CDS
TCTTGGCTTGTAGGCCAACT+GGG 0.474549 3.3:+87650939 MS.gene014846:CDS
GACGAGTCACGACGAAGATC+CGG 0.474753 3.3:+87650313 MS.gene014846:CDS
TTAGAGGGGAAGGTGGGATG+AGG 0.476333 3.3:+87650777 MS.gene014846:CDS
TAGCACTCCCTCCACTAAGT+TGG 0.477701 3.3:-87651756 None:intergenic
CCATTTGCATTATTATTAGC+CGG 0.478356 3.3:-87651517 None:intergenic
CAGAAGAATGCTTTAGGTGG+TGG 0.478692 3.3:+87651667 MS.gene014846:CDS
TGTTACTGTGACTCCTTTGA+GGG 0.482095 3.3:+87650856 MS.gene014846:CDS
GACAATTTAGAGGGGAAGGT+GGG 0.482887 3.3:+87650771 MS.gene014846:CDS
GAGGTCCCATTCCATGAACT+GGG 0.483754 3.3:-87652071 None:intergenic
CATTTCGGCCATTTGCACAT+AGG 0.483880 3.3:-87651905 None:intergenic
ACCGCAGTTTACGGAGGACT+TGG 0.485521 3.3:+87651420 MS.gene014846:CDS
TAGTAAGTTGTTGGAGACAC+TGG 0.489566 3.3:+87651222 MS.gene014846:CDS
GGAGTATGGTAATACCCGTT+TGG 0.490570 3.3:-87652093 None:intergenic
AAAAGCGATTGGAGCGGTGA+AGG 0.491311 3.3:+87650217 MS.gene014846:CDS
GTGAAGGATCAGACGAGTAT+TGG 0.495455 3.3:+87650233 MS.gene014846:CDS
AGTTCCCAATCCGCTTTCCC+AGG 0.496887 3.3:-87651610 None:intergenic
CAACATGGCGCCGGAATTGG+AGG 0.497407 3.3:+87650274 MS.gene014846:CDS
GGTGATGTGAATGAAGTGTC+GGG 0.503105 3.3:+87650815 MS.gene014846:CDS
GAAAGAGGAAGCTCCTAAGC+TGG 0.504819 3.3:+87651291 MS.gene014846:CDS
GGACAATTTAGAGGGGAAGG+TGG 0.509390 3.3:+87650770 MS.gene014846:CDS
ACGCGTCTTCCCCAATCGCT+TGG 0.510059 3.3:-87650417 None:intergenic
TCTTTGAACTTCCGGATACT+CGG 0.511861 3.3:-87651194 None:intergenic
CCTCCATACTCATACTCATT+CGG 0.512264 3.3:-87650746 None:intergenic
CTGGCTGCACAGATCCATCT+GGG 0.512279 3.3:-87651837 None:intergenic
AGCACAATCCGAAAAGCGAT+TGG 0.514162 3.3:+87650206 MS.gene014846:CDS
GGGGTATAATTCTCAGGTGC+AGG 0.514218 3.3:-87651364 None:intergenic
ATGGAATGGGACCTCCAAAC+GGG 0.516808 3.3:+87652079 MS.gene014846:CDS
TTAGCTCTCCCAGCCCCAGA+TGG 0.517956 3.3:+87651823 MS.gene014846:CDS
TTCGGCCATTTGCACATAGG+AGG 0.519643 3.3:-87651902 None:intergenic
AGTGTGGCGTTGCCGGGACC+GGG 0.520277 3.3:+87651781 MS.gene014846:CDS
ATGTTGTTTGATAGAAAAGC+TGG 0.520386 3.3:+87650653 MS.gene014846:CDS
TTGGTGTAAAGAAAGTGGTT+TGG 0.520726 3.3:+87651162 MS.gene014846:CDS
ATGTTCAATGATGCGGCGAA+CGG 0.523167 3.3:-87651871 None:intergenic
GGTGGCGGGGTATAATTCTC+AGG 0.525615 3.3:-87651370 None:intergenic
ATGCTACGAGGAGAGGGACT+AGG 0.526966 3.3:+87650525 MS.gene014846:CDS
ATCTTCCCGAAAATCCTCTC+CGG 0.528840 3.3:-87650887 None:intergenic
TCCTTTGAGGGATATGAAGC+CGG 0.529821 3.3:+87650868 MS.gene014846:CDS
GGAAGTACAAGAGGAGGAGC+CGG 0.530728 3.3:+87651312 MS.gene014846:CDS
AAACCCCTGCAGCTGAACCT+GGG 0.532015 3.3:+87651593 MS.gene014846:CDS
TCAGGATATGAACGAGATCA+AGG 0.532360 3.3:+87651336 MS.gene014846:CDS
GGAGGAGTTTGTGAGGGATA+GGG 0.532775 3.3:+87651243 MS.gene014846:CDS
AGCTGTGGCATCAGTATGCA+AGG 0.533057 3.3:+87651962 MS.gene014846:CDS
CGGAGGACTTGGTGAATCTG+AGG 0.533271 3.3:+87651431 MS.gene014846:CDS
CTTATATACTTCTCACTCGC+CGG 0.534004 3.3:-87650332 None:intergenic
AGAAGAATGCTTTAGGTGGT+GGG 0.534327 3.3:+87651668 MS.gene014846:CDS
TGCAGCTGAACCTGGGAAAG+CGG 0.538233 3.3:+87651600 MS.gene014846:CDS
AGGCTCTGGTGGAGGTGGCG+GGG 0.540099 3.3:-87651383 None:intergenic
AAAGAGTCCAGAGAGGAAAG+AGG 0.540156 3.3:+87651276 MS.gene014846:CDS
GATAGAAAAGCTGGTAGTGT+TGG 0.540496 3.3:+87650662 MS.gene014846:CDS
CATGGCGCCGGAATTGGAGG+TGG 0.543914 3.3:+87650277 MS.gene014846:CDS
GGGGCTGGGAGAGCTAAAAC+AGG 0.544685 3.3:-87651817 None:intergenic
TTTCCCAGGTTCAGCTGCAG+GGG 0.545857 3.3:-87651596 None:intergenic
GGTGGACAATTTAGAGGGGA+AGG 0.546935 3.3:+87650767 MS.gene014846:CDS
ATGGTACTGGATACTATGCT+GGG 0.551613 3.3:+87652025 MS.gene014846:CDS
ATGGAGGTGGACAATTTAGA+GGG 0.551974 3.3:+87650762 MS.gene014846:CDS
ATGAGGAAGACGAGGTCGTA+TGG 0.552855 3.3:+87650794 MS.gene014846:CDS
GTTCATCGACTGATGAATGA+TGG 0.553308 3.3:+87650473 MS.gene014846:CDS
TGGCATCAGTATGCAAGGGA+TGG 0.556853 3.3:+87651967 MS.gene014846:CDS
CTTTCCATCAAATGGACAGC+CGG 0.557840 3.3:+87651552 MS.gene014846:CDS
TCAGGGTAATAGATTTGCGT+TGG 0.558037 3.3:+87651477 MS.gene014846:CDS
TTGTGAGGGATAGGGCTAAG+AGG 0.559656 3.3:+87651251 MS.gene014846:CDS
TCCTAAGCTGGAAGTACAAG+AGG 0.562685 3.3:+87651303 MS.gene014846:CDS
CAGCTGTGTCCAAGCGATTG+GGG 0.563623 3.3:+87650408 MS.gene014846:CDS
CATGGAATGGGACCTCCAAA+CGG 0.565171 3.3:+87652078 MS.gene014846:CDS
TAATAATGCAAATGGATCGT+GGG 0.567598 3.3:+87651525 MS.gene014846:CDS
AGAAAAGCTGGTAGTGTTGG+TGG 0.569447 3.3:+87650665 MS.gene014846:CDS
AATGAGTATGAGTATGGAGG+TGG 0.576242 3.3:+87650749 MS.gene014846:CDS
AGCACTTGCATAAGCATCAA+AGG 0.577337 3.3:-87651104 None:intergenic
TCGGCCATTTGCACATAGGA+GGG 0.577744 3.3:-87651901 None:intergenic
AGTAGCGAGCAACATGGCGC+CGG 0.578249 3.3:+87650265 MS.gene014846:CDS
ATTTGCACATAGGAGGGAGG+TGG 0.579870 3.3:-87651895 None:intergenic
TTTGATTGCATTGTATCCGT+TGG 0.580416 3.3:+87650985 MS.gene014846:CDS
AGCCGGAAGTAACTTCAGCT+TGG 0.581334 3.3:+87651569 MS.gene014846:CDS
GTATGGTAATACCCGTTTGG+AGG 0.584432 3.3:-87652090 None:intergenic
TTATGTATGCTACGAGGAGA+GGG 0.585734 3.3:+87650519 MS.gene014846:CDS
TATGCAAGGGATGGGATGCA+AGG 0.585796 3.3:+87651976 MS.gene014846:CDS
ATAATAATGCAAATGGATCG+TGG 0.587702 3.3:+87651524 MS.gene014846:CDS
ATTATGTATGCTACGAGGAG+AGG 0.593045 3.3:+87650518 MS.gene014846:CDS
TTGTTCTTAGCCAACCCAGT+TGG 0.593548 3.3:-87650953 None:intergenic
TTGAATGGCATGTATGATCA+AGG 0.598862 3.3:+87651706 MS.gene014846:CDS
GGAAGATGAGTCATTTGCAG+AGG 0.598868 3.3:+87650903 MS.gene014846:CDS
GCTTGACAAATTCTTTGACA+TGG 0.599304 3.3:+87651060 MS.gene014846:CDS
ATGCTTTGTATCTCGATCAG+AGG 0.601861 3.3:+87650621 MS.gene014846:CDS
TCCGGCTTCATATCCCTCAA+AGG 0.602526 3.3:-87650869 None:intergenic
AACTTGATGTCTTACTCGCG+TGG 0.604269 3.3:+87650365 MS.gene014846:CDS
TGGTGATGTGAATGAAGTGT+CGG 0.612307 3.3:+87650814 MS.gene014846:CDS
GACACTGGAGGAGTTTGTGA+GGG 0.619044 3.3:+87651237 MS.gene014846:CDS
GCAGTCACTGCAGACGATCA+GGG 0.621548 3.3:+87651460 MS.gene014846:CDS
TAAGCTGGAAGTACAAGAGG+AGG 0.625162 3.3:+87651306 MS.gene014846:CDS
AAAGCTGGTAGTGTTGGTGG+TGG 0.625469 3.3:+87650668 MS.gene014846:CDS
TGGAGGTGGACAATTTAGAG+GGG 0.626675 3.3:+87650763 MS.gene014846:CDS
TTGTGCATGAGCAGCAGCTG+TGG 0.626683 3.3:+87651947 MS.gene014846:CDS
AGACACTGGAGGAGTTTGTG+AGG 0.628043 3.3:+87651236 MS.gene014846:CDS
GGTCCCATTCCATGAACTGG+GGG 0.628379 3.3:-87652069 None:intergenic
AGGTGGAATGTTCAATGATG+CGG 0.628537 3.3:-87651878 None:intergenic
AGCACTTCCCAACTTAGTGG+AGG 0.634431 3.3:+87651748 MS.gene014846:CDS
GCCATTTGCACATAGGAGGG+AGG 0.634464 3.3:-87651898 None:intergenic
TGGTACTGGATACTATGCTG+GGG 0.635659 3.3:+87652026 MS.gene014846:CDS
GGCATCAGTATGCAAGGGAT+GGG 0.637136 3.3:+87651968 MS.gene014846:CDS
ACCAAGTCCTCCGTAAACTG+CGG 0.641216 3.3:-87651421 None:intergenic
GGAGGACTTGGTGAATCTGA+GGG 0.641575 3.3:+87651432 MS.gene014846:CDS
TAAACAGATTGATGAACTTG+TGG 0.645164 3.3:+87651129 MS.gene014846:CDS
AGCTTGAACAAAATGAACAA+TGG 0.645990 3.3:+87652006 MS.gene014846:CDS
CCATACTCATACTCATTCGG+TGG 0.649853 3.3:-87650743 None:intergenic
TGAAAACTCTCCTTAACCAA+CGG 0.650974 3.3:-87651001 None:intergenic
GAGAGCTAAAACAGGTGTTG+TGG 0.651335 3.3:-87651809 None:intergenic
GCTGTATGCTGATATATGCG+AGG 0.654854 3.3:+87651024 MS.gene014846:CDS
AGCGAAAGTAGCGAGCAACA+TGG 0.657386 3.3:+87650259 MS.gene014846:CDS
TGAGGGATATGAAGCCGGAG+AGG 0.659064 3.3:+87650873 MS.gene014846:CDS
CCGAATGAGTATGAGTATGG+AGG 0.662053 3.3:+87650746 MS.gene014846:CDS
GCACTTCCCAACTTAGTGGA+GGG 0.664190 3.3:+87651749 MS.gene014846:CDS
TAAGTTGTTGGAGACACTGG+AGG 0.669834 3.3:+87651225 MS.gene014846:CDS
GCTGTGGCATCAGTATGCAA+GGG 0.669933 3.3:+87651963 MS.gene014846:CDS
AGGCAGAAGAATGCTTTAGG+TGG 0.677279 3.3:+87651664 MS.gene014846:CDS
TGGCATGTATGATCAAGGAA+TGG 0.678938 3.3:+87651711 MS.gene014846:CDS
TTGAACTTCCGGATACTCGG+AGG 0.680206 3.3:-87651191 None:intergenic
GGACTTGGTGAATCTGAGGG+AGG 0.680416 3.3:+87651435 MS.gene014846:CDS
TGGAGGGAGTGCTAGCAGTG+TGG 0.687452 3.3:+87651765 MS.gene014846:CDS
AGGTCCCATTCCATGAACTG+GGG 0.690448 3.3:-87652070 None:intergenic
GGTACTGGATACTATGCTGG+GGG 0.690788 3.3:+87652027 MS.gene014846:CDS
GGAGTATCCTGATTGTGTGA+AGG 0.692728 3.3:+87651081 MS.gene014846:CDS
GCCAAAACCGCAGTTTACGG+AGG 0.695554 3.3:+87651414 MS.gene014846:CDS
GTGATGTGAATGAAGTGTCG+GGG 0.703090 3.3:+87650816 MS.gene014846:CDS
TGGCTGCACAGATCCATCTG+GGG 0.707777 3.3:-87651836 None:intergenic
AATCCGAAAAGCGATTGGAG+CGG 0.709364 3.3:+87650211 MS.gene014846:CDS
AAGGTGGGATGAGGAAGACG+AGG 0.712639 3.3:+87650786 MS.gene014846:CDS
AGAGGCCAAAGAGTCCAGAG+AGG 0.718357 3.3:+87651269 MS.gene014846:CDS
TGTATGATCAAGGAATGGTG+AGG 0.740576 3.3:+87651716 MS.gene014846:CDS
AAGAGATTATGTATGCTACG+AGG 0.775372 3.3:+87650513 MS.gene014846:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAGAATTACTAGTAAGTTGT+TGG + chr3.3:87651213-87651232 MS.gene014846:CDS 25.0%
AACAAAATGAACAATGGTAC+TGG + chr3.3:87652012-87652031 MS.gene014846:CDS 30.0%
AGCTTGAACAAAATGAACAA+TGG + chr3.3:87652006-87652025 MS.gene014846:CDS 30.0%
ATAATAATGCAAATGGATCG+TGG + chr3.3:87651524-87651543 MS.gene014846:CDS 30.0%
ATAATCTCTTCCTGGAAAAT+CGG - chr3.3:87650503-87650522 None:intergenic 30.0%
ATACATGCCATTCAACAATA+AGG - chr3.3:87651701-87651720 None:intergenic 30.0%
CCATTTGCATTATTATTAGC+CGG - chr3.3:87651520-87651539 None:intergenic 30.0%
CTAGTAATTCTTTGAACTTC+CGG - chr3.3:87651205-87651224 None:intergenic 30.0%
TAAACAGATTGATGAACTTG+TGG + chr3.3:87651129-87651148 MS.gene014846:CDS 30.0%
TAATAATGCAAATGGATCGT+GGG + chr3.3:87651525-87651544 MS.gene014846:CDS 30.0%
TACAATTGGTGTAAAGAAAG+TGG + chr3.3:87651157-87651176 MS.gene014846:CDS 30.0%
TACATGCCATTCAACAATAA+GGG - chr3.3:87651700-87651719 None:intergenic 30.0%
! ATGTTGTTTGATAGAAAAGC+TGG + chr3.3:87650653-87650672 MS.gene014846:CDS 30.0%
!! TATGTCTGATTTTAGAGATG+AGG + chr3.3:87650556-87650575 MS.gene014846:CDS 30.0%
AAGAGATTATGTATGCTACG+AGG + chr3.3:87650513-87650532 MS.gene014846:CDS 35.0%
CCGGCTAATAATAATGCAAA+TGG + chr3.3:87651517-87651536 MS.gene014846:CDS 35.0%
CTTGATCCCTTATTGTTGAA+TGG + chr3.3:87651691-87651710 MS.gene014846:CDS 35.0%
GCTTGACAAATTCTTTGACA+TGG + chr3.3:87651060-87651079 MS.gene014846:CDS 35.0%
GTGGGAGAGAAAATAATTTC+AGG + chr3.3:87650717-87650736 MS.gene014846:CDS 35.0%
TAGCATACATAATCTCTTCC+TGG - chr3.3:87650511-87650530 None:intergenic 35.0%
TGAAAACTCTCCTTAACCAA+CGG - chr3.3:87651004-87651023 None:intergenic 35.0%
TTGAATGGCATGTATGATCA+AGG + chr3.3:87651706-87651725 MS.gene014846:CDS 35.0%
TTGGTGTAAAGAAAGTGGTT+TGG + chr3.3:87651162-87651181 MS.gene014846:CDS 35.0%
TTTGATTGCATTGTATCCGT+TGG + chr3.3:87650985-87651004 MS.gene014846:CDS 35.0%
! AACTTGTGGCGTTTTACAAT+TGG + chr3.3:87651143-87651162 MS.gene014846:CDS 35.0%
! TCATTTTGTTCAAGCTAGAC+TGG - chr3.3:87652002-87652021 None:intergenic 35.0%
! TTGTTGCTTCTTCTCCATTT+CGG - chr3.3:87651923-87651942 None:intergenic 35.0%
AATGAGTATGAGTATGGAGG+TGG + chr3.3:87650749-87650768 MS.gene014846:CDS 40.0%
AGACAGCCAGCAATTTATCT+AGG + chr3.3:87651644-87651663 MS.gene014846:CDS 40.0%
AGCACTTGCATAAGCATCAA+AGG - chr3.3:87651107-87651126 None:intergenic 40.0%
AGGTGGAATGTTCAATGATG+CGG - chr3.3:87651881-87651900 None:intergenic 40.0%
ATCTCGTTCATATCCTGAAC+CGG - chr3.3:87651334-87651353 None:intergenic 40.0%
ATGCTTTGTATCTCGATCAG+AGG + chr3.3:87650621-87650640 MS.gene014846:CDS 40.0%
ATGGAGGTGGACAATTTAGA+GGG + chr3.3:87650762-87650781 MS.gene014846:CDS 40.0%
ATTATGTATGCTACGAGGAG+AGG + chr3.3:87650518-87650537 MS.gene014846:CDS 40.0%
CCTCCATACTCATACTCATT+CGG - chr3.3:87650749-87650768 None:intergenic 40.0%
CTTATATACTTCTCACTCGC+CGG - chr3.3:87650335-87650354 None:intergenic 40.0%
CTTCTGCCTAGATAAATTGC+TGG - chr3.3:87651653-87651672 None:intergenic 40.0%
TAGTAAGTTGTTGGAGACAC+TGG + chr3.3:87651222-87651241 MS.gene014846:CDS 40.0%
TATGGAGGTGGACAATTTAG+AGG + chr3.3:87650761-87650780 MS.gene014846:CDS 40.0%
TCAGGATATGAACGAGATCA+AGG + chr3.3:87651336-87651355 MS.gene014846:CDS 40.0%
TCAGGGTAATAGATTTGCGT+TGG + chr3.3:87651477-87651496 MS.gene014846:CDS 40.0%
TCTAGGCAGAAGAATGCTTT+AGG + chr3.3:87651661-87651680 MS.gene014846:CDS 40.0%
TCTTTGAACTTCCGGATACT+CGG - chr3.3:87651197-87651216 None:intergenic 40.0%
TGGCATGTATGATCAAGGAA+TGG + chr3.3:87651711-87651730 MS.gene014846:CDS 40.0%
TGTATGATCAAGGAATGGTG+AGG + chr3.3:87651716-87651735 MS.gene014846:CDS 40.0%
TGTTACTGTGACTCCTTTGA+GGG + chr3.3:87650856-87650875 MS.gene014846:CDS 40.0%
TTATGTATGCTACGAGGAGA+GGG + chr3.3:87650519-87650538 MS.gene014846:CDS 40.0%
TTGTTACTGTGACTCCTTTG+AGG + chr3.3:87650855-87650874 MS.gene014846:CDS 40.0%
! AATGGTACTGGATACTATGC+TGG + chr3.3:87652024-87652043 MS.gene014846:CDS 40.0%
! AGAAGAATGCTTTAGGTGGT+GGG + chr3.3:87651668-87651687 MS.gene014846:CDS 40.0%
! ATGAGGCTCATTCAAGTTCT+TGG + chr3.3:87650573-87650592 MS.gene014846:CDS 40.0%
! ATGGTACTGGATACTATGCT+GGG + chr3.3:87652025-87652044 MS.gene014846:CDS 40.0%
! GATAGAAAAGCTGGTAGTGT+TGG + chr3.3:87650662-87650681 MS.gene014846:CDS 40.0%
! GTTCATCGACTGATGAATGA+TGG + chr3.3:87650473-87650492 MS.gene014846:CDS 40.0%
! TGAGGCTCATTCAAGTTCTT+GGG + chr3.3:87650574-87650593 MS.gene014846:CDS 40.0%
! TGCATTGTATCCGTTGGTTA+AGG + chr3.3:87650991-87651010 MS.gene014846:CDS 40.0%
! TGCTGATATATGCGAGGTTT+TGG + chr3.3:87651030-87651049 MS.gene014846:CDS 40.0%
! TGGTGATGTGAATGAAGTGT+CGG + chr3.3:87650814-87650833 MS.gene014846:CDS 40.0%
!! GGGATCATTCTGCTTTTGTT+AGG + chr3.3:87650594-87650613 MS.gene014846:CDS 40.0%
AAAGAGTCCAGAGAGGAAAG+AGG + chr3.3:87651276-87651295 MS.gene014846:CDS 45.0%
AACTTGATGTCTTACTCGCG+TGG + chr3.3:87650365-87650384 MS.gene014846:CDS 45.0%
AATCCGAAAAGCGATTGGAG+CGG + chr3.3:87650211-87650230 MS.gene014846:CDS 45.0%
AGCACAATCCGAAAAGCGAT+TGG + chr3.3:87650206-87650225 MS.gene014846:CDS 45.0%
ATCTGTGCAGCCAGTTAATC+AGG + chr3.3:87651846-87651865 MS.gene014846:CDS 45.0%
ATCTTCCCGAAAATCCTCTC+CGG - chr3.3:87650890-87650909 None:intergenic 45.0%
ATGTTCAATGATGCGGCGAA+CGG - chr3.3:87651874-87651893 None:intergenic 45.0%
CATTTCGGCCATTTGCACAT+AGG - chr3.3:87651908-87651927 None:intergenic 45.0%
CCACCGAATGAGTATGAGTA+TGG + chr3.3:87650743-87650762 MS.gene014846:CDS 45.0%
CCATACTCATACTCATTCGG+TGG - chr3.3:87650746-87650765 None:intergenic 45.0%
CCGAATGAGTATGAGTATGG+AGG + chr3.3:87650746-87650765 MS.gene014846:CDS 45.0%
CTATGTGCAAATGGCCGAAA+TGG + chr3.3:87651906-87651925 MS.gene014846:CDS 45.0%
CTTTCCATCAAATGGACAGC+CGG + chr3.3:87651552-87651571 MS.gene014846:CDS 45.0%
GACAATTTAGAGGGGAAGGT+GGG + chr3.3:87650771-87650790 MS.gene014846:CDS 45.0%
GCTGTATGCTGATATATGCG+AGG + chr3.3:87651024-87651043 MS.gene014846:CDS 45.0%
GGAAGATGAGTCATTTGCAG+AGG + chr3.3:87650903-87650922 MS.gene014846:CDS 45.0%
GGAGTATGGTAATACCCGTT+TGG - chr3.3:87652096-87652115 None:intergenic 45.0%
GTATGGTAATACCCGTTTGG+AGG - chr3.3:87652093-87652112 None:intergenic 45.0%
GTGAAGGATCAGACGAGTAT+TGG + chr3.3:87650233-87650252 MS.gene014846:CDS 45.0%
TAAGTTGTTGGAGACACTGG+AGG + chr3.3:87651225-87651244 MS.gene014846:CDS 45.0%
TCAAAGGCCTTCACACAATC+AGG - chr3.3:87651091-87651110 None:intergenic 45.0%
TCCTCTTGTACTTCCAGCTT+AGG - chr3.3:87651307-87651326 None:intergenic 45.0%
TCTTTCCTCTCTGGACTCTT+TGG - chr3.3:87651277-87651296 None:intergenic 45.0%
TGAGCCAAAACCGCAGTTTA+CGG + chr3.3:87651411-87651430 MS.gene014846:CDS 45.0%
TGCCAAGCTGAAGTTACTTC+CGG - chr3.3:87651574-87651593 None:intergenic 45.0%
TGGAGGTGGACAATTTAGAG+GGG + chr3.3:87650763-87650782 MS.gene014846:CDS 45.0%
TGGGAAGCCTTTCCATCAAA+TGG + chr3.3:87651544-87651563 MS.gene014846:CDS 45.0%
TGTCGGGGAATGATGATAGA+AGG + chr3.3:87650831-87650850 MS.gene014846:CDS 45.0%
TTGTTCTTAGCCAACCCAGT+TGG - chr3.3:87650956-87650975 None:intergenic 45.0%
! AGAAAAGCTGGTAGTGTTGG+TGG + chr3.3:87650665-87650684 MS.gene014846:CDS 45.0%
! AGGCAGAAGAATGCTTTAGG+TGG + chr3.3:87651664-87651683 MS.gene014846:CDS 45.0%
! ATGAAGCCGGAGAGGATTTT+CGG + chr3.3:87650881-87650900 MS.gene014846:CDS 45.0%
! CAGAAGAATGCTTTAGGTGG+TGG + chr3.3:87651667-87651686 MS.gene014846:CDS 45.0%
! GAGAGCTAAAACAGGTGTTG+TGG - chr3.3:87651812-87651831 None:intergenic 45.0%
! GAGGCTTTTGGATCGTTTCT+TGG + chr3.3:87650922-87650941 MS.gene014846:CDS 45.0%
! GAGTCATTTGCAGAGGCTTT+TGG + chr3.3:87650910-87650929 MS.gene014846:CDS 45.0%
! GGAGTATCCTGATTGTGTGA+AGG + chr3.3:87651081-87651100 MS.gene014846:CDS 45.0%
! GGTGATGTGAATGAAGTGTC+GGG + chr3.3:87650815-87650834 MS.gene014846:CDS 45.0%
! TAAGCTGGAAGTACAAGAGG+AGG + chr3.3:87651306-87651325 MS.gene014846:CDS 45.0%
! TCCTAAGCTGGAAGTACAAG+AGG + chr3.3:87651303-87651322 MS.gene014846:CDS 45.0%
! TCCTTTGAGGGATATGAAGC+CGG + chr3.3:87650868-87650887 MS.gene014846:CDS 45.0%
! TGGTACTGGATACTATGCTG+GGG + chr3.3:87652026-87652045 MS.gene014846:CDS 45.0%
!! CTGGGTTGGCTAAGAACAAT+AGG + chr3.3:87650957-87650976 MS.gene014846:CDS 45.0%
!! GTGATGTGAATGAAGTGTCG+GGG + chr3.3:87650816-87650835 MS.gene014846:CDS 45.0%
!! TGGATCGTTTCTTGGCTTGT+AGG + chr3.3:87650930-87650949 MS.gene014846:CDS 45.0%
!!! TGATGGAACACCGATTTTCC+AGG + chr3.3:87650490-87650509 MS.gene014846:CDS 45.0%
AAAAGCGATTGGAGCGGTGA+AGG + chr3.3:87650217-87650236 MS.gene014846:CDS 50.0%
AATGCCCCCAGTTCATGGAA+TGG + chr3.3:87652065-87652084 MS.gene014846:CDS 50.0%
ACAATCGCCACCTCCAATTC+CGG - chr3.3:87650287-87650306 None:intergenic 50.0%
ACCAAGTCCTCCGTAAACTG+CGG - chr3.3:87651424-87651443 None:intergenic 50.0%
ACCTCCCTCCTATGTGCAAA+TGG + chr3.3:87651897-87651916 MS.gene014846:CDS 50.0%
ACTTCCGGCTGTCCATTTGA+TGG - chr3.3:87651559-87651578 None:intergenic 50.0%
AGACACTGGAGGAGTTTGTG+AGG + chr3.3:87651236-87651255 MS.gene014846:CDS 50.0%
AGCACTCCCTCCACTAAGTT+GGG - chr3.3:87651758-87651777 None:intergenic 50.0%
AGCACTTCCCAACTTAGTGG+AGG + chr3.3:87651748-87651767 MS.gene014846:CDS 50.0%
AGCCGGAAGTAACTTCAGCT+TGG + chr3.3:87651569-87651588 MS.gene014846:CDS 50.0%
AGCGAAAGTAGCGAGCAACA+TGG + chr3.3:87650259-87650278 MS.gene014846:CDS 50.0%
AGCTGTGGCATCAGTATGCA+AGG + chr3.3:87651962-87651981 MS.gene014846:CDS 50.0%
AGGTCCCATTCCATGAACTG+GGG - chr3.3:87652073-87652092 None:intergenic 50.0%
ATGAGGAAGACGAGGTCGTA+TGG + chr3.3:87650794-87650813 MS.gene014846:CDS 50.0%
ATGCCCCCAGTTCATGGAAT+GGG + chr3.3:87652066-87652085 MS.gene014846:CDS 50.0%
ATGGAATGGGACCTCCAAAC+GGG + chr3.3:87652079-87652098 MS.gene014846:CDS 50.0%
ATTTGCACATAGGAGGGAGG+TGG - chr3.3:87651898-87651917 None:intergenic 50.0%
CATGGAATGGGACCTCCAAA+CGG + chr3.3:87652078-87652097 MS.gene014846:CDS 50.0%
CGGCTGTCCATTTGATGGAA+AGG - chr3.3:87651554-87651573 None:intergenic 50.0%
GAAAGAGGAAGCTCCTAAGC+TGG + chr3.3:87651291-87651310 MS.gene014846:CDS 50.0%
GACACTGGAGGAGTTTGTGA+GGG + chr3.3:87651237-87651256 MS.gene014846:CDS 50.0%
GAGGTCCCATTCCATGAACT+GGG - chr3.3:87652074-87652093 None:intergenic 50.0%
GCACTTCCCAACTTAGTGGA+GGG + chr3.3:87651749-87651768 MS.gene014846:CDS 50.0%
GCGAACGGATCCTGATTAAC+TGG - chr3.3:87651859-87651878 None:intergenic 50.0%
GCTGTGGCATCAGTATGCAA+GGG + chr3.3:87651963-87651982 MS.gene014846:CDS 50.0%
GGACAATTTAGAGGGGAAGG+TGG + chr3.3:87650770-87650789 MS.gene014846:CDS 50.0%
GGAGGAGTTTGTGAGGGATA+GGG + chr3.3:87651243-87651262 MS.gene014846:CDS 50.0%
GGCATCAGTATGCAAGGGAT+GGG + chr3.3:87651968-87651987 MS.gene014846:CDS 50.0%
GGGGTATAATTCTCAGGTGC+AGG - chr3.3:87651367-87651386 None:intergenic 50.0%
GGTGGACAATTTAGAGGGGA+AGG + chr3.3:87650767-87650786 MS.gene014846:CDS 50.0%
GTGAGCACTTCCCAACTTAG+TGG + chr3.3:87651745-87651764 MS.gene014846:CDS 50.0%
TAGCACTCCCTCCACTAAGT+TGG - chr3.3:87651759-87651778 None:intergenic 50.0%
TATGCAAGGGATGGGATGCA+AGG + chr3.3:87651976-87651995 MS.gene014846:CDS 50.0%
TATGGAATGCCCCCAGTTCA+TGG + chr3.3:87652060-87652079 MS.gene014846:CDS 50.0%
TCAGCTGTGTCCAAGCGATT+GGG + chr3.3:87650407-87650426 MS.gene014846:CDS 50.0%
TCCGGCTTCATATCCCTCAA+AGG - chr3.3:87650872-87650891 None:intergenic 50.0%
TCGGCCATTTGCACATAGGA+GGG - chr3.3:87651904-87651923 None:intergenic 50.0%
TGGAGGAGTTTGTGAGGGAT+AGG + chr3.3:87651242-87651261 MS.gene014846:CDS 50.0%
TGGCATCAGTATGCAAGGGA+TGG + chr3.3:87651967-87651986 MS.gene014846:CDS 50.0%
TTCAGCTGTGTCCAAGCGAT+TGG + chr3.3:87650406-87650425 MS.gene014846:CDS 50.0%
TTCGGCCATTTGCACATAGG+AGG - chr3.3:87651905-87651924 None:intergenic 50.0%
TTGAACTTCCGGATACTCGG+AGG - chr3.3:87651194-87651213 None:intergenic 50.0%
TTGTGAGGGATAGGGCTAAG+AGG + chr3.3:87651251-87651270 MS.gene014846:CDS 50.0%
! ACAGGTGTTGTGGTCTTTCC+CGG - chr3.3:87651802-87651821 None:intergenic 50.0%
! GGTACTGGATACTATGCTGG+GGG + chr3.3:87652027-87652046 MS.gene014846:CDS 50.0%
! TCCTCCGTAAACTGCGGTTT+TGG - chr3.3:87651418-87651437 None:intergenic 50.0%
! TGAACCTGGGAAAGCGGATT+GGG + chr3.3:87651606-87651625 MS.gene014846:CDS 50.0%
! TGAAGCCGGAGAGGATTTTC+GGG + chr3.3:87650882-87650901 MS.gene014846:CDS 50.0%
! TTTGCGTTGGCACTCTTTGC+TGG + chr3.3:87651490-87651509 MS.gene014846:CDS 50.0%
!! AAAGCTGGTAGTGTTGGTGG+TGG + chr3.3:87650668-87650687 MS.gene014846:CDS 50.0%
!! GGAGGACTTGGTGAATCTGA+GGG + chr3.3:87651432-87651451 MS.gene014846:CDS 50.0%
!! TCACCGCTCCAATCGCTTTT+CGG - chr3.3:87650217-87650236 None:intergenic 50.0%
!! TCTTGGCTTGTAGGCCAACT+GGG + chr3.3:87650939-87650958 MS.gene014846:CDS 50.0%
!! TGAACTGGGGGCATTCCATA+AGG - chr3.3:87652060-87652079 None:intergenic 50.0%
!! TTCTTGGCTTGTAGGCCAAC+TGG + chr3.3:87650938-87650957 MS.gene014846:CDS 50.0%
!!! GTAAACTGCGGTTTTGGCTC+AGG - chr3.3:87651412-87651431 None:intergenic 50.0%
AAACCCCTGCAGCTGAACCT+GGG + chr3.3:87651593-87651612 MS.gene014846:CDS 55.0%
AAGGTGGGATGAGGAAGACG+AGG + chr3.3:87650786-87650805 MS.gene014846:CDS 55.0%
ACCGCAGTTTACGGAGGACT+TGG + chr3.3:87651420-87651439 MS.gene014846:CDS 55.0%
ACTGGCTGCACAGATCCATC+TGG - chr3.3:87651841-87651860 None:intergenic 55.0%
AGAGGCCAAAGAGTCCAGAG+AGG + chr3.3:87651269-87651288 MS.gene014846:CDS 55.0%
AGTTCCCAATCCGCTTTCCC+AGG - chr3.3:87651613-87651632 None:intergenic 55.0%
ATGCTACGAGGAGAGGGACT+AGG + chr3.3:87650525-87650544 MS.gene014846:CDS 55.0%
CAGCTGTGTCCAAGCGATTG+GGG + chr3.3:87650408-87650427 MS.gene014846:CDS 55.0%
CTGAACCTGGGAAAGCGGAT+TGG + chr3.3:87651605-87651624 MS.gene014846:CDS 55.0%
CTGGCTGCACAGATCCATCT+GGG - chr3.3:87651840-87651859 None:intergenic 55.0%
CTTTCCCAGGTTCAGCTGCA+GGG - chr3.3:87651600-87651619 None:intergenic 55.0%
GACGAGTCACGACGAAGATC+CGG + chr3.3:87650313-87650332 MS.gene014846:CDS 55.0%
GATTGGGGAAGACGCGTGAT+TGG + chr3.3:87650423-87650442 MS.gene014846:CDS 55.0%
GCAGTCACTGCAGACGATCA+GGG + chr3.3:87651460-87651479 MS.gene014846:CDS 55.0%
GCCAAAACCGCAGTTTACGG+AGG + chr3.3:87651414-87651433 MS.gene014846:CDS 55.0%
GCCATTTGCACATAGGAGGG+AGG - chr3.3:87651901-87651920 None:intergenic 55.0%
GGAGCTTCCTCTTTCCTCTC+TGG - chr3.3:87651286-87651305 None:intergenic 55.0%
GGAGGTCCCATTCCATGAAC+TGG - chr3.3:87652075-87652094 None:intergenic 55.0%
GGTCCCATTCCATGAACTGG+GGG - chr3.3:87652072-87652091 None:intergenic 55.0%
TGAGGGATATGAAGCCGGAG+AGG + chr3.3:87650873-87650892 MS.gene014846:CDS 55.0%
TGCAGCTGAACCTGGGAAAG+CGG + chr3.3:87651600-87651619 MS.gene014846:CDS 55.0%
TGCAGTCACTGCAGACGATC+AGG + chr3.3:87651459-87651478 MS.gene014846:CDS 55.0%
TGGCTGCACAGATCCATCTG+GGG - chr3.3:87651839-87651858 None:intergenic 55.0%
TTAGAGGGGAAGGTGGGATG+AGG + chr3.3:87650777-87650796 MS.gene014846:CDS 55.0%
TTGTGCATGAGCAGCAGCTG+TGG + chr3.3:87651947-87651966 MS.gene014846:CDS 55.0%
TTTCCCAGGTTCAGCTGCAG+GGG - chr3.3:87651599-87651618 None:intergenic 55.0%
! GGAAGTACAAGAGGAGGAGC+CGG + chr3.3:87651312-87651331 MS.gene014846:CDS 55.0%
!! AGCGGATTGGGAACTGGCAT+TGG + chr3.3:87651618-87651637 MS.gene014846:CDS 55.0%
!! CGGAGGACTTGGTGAATCTG+AGG + chr3.3:87651431-87651450 MS.gene014846:CDS 55.0%
!! GGACTTGGTGAATCTGAGGG+AGG + chr3.3:87651435-87651454 MS.gene014846:CDS 55.0%
!! GGGGGCATTCCATAAGGCAT+AGG - chr3.3:87652054-87652073 None:intergenic 55.0%
!! GGTGGCGGGGTATAATTCTC+AGG - chr3.3:87651373-87651392 None:intergenic 55.0%
!! TGGGAAAGCGGATTGGGAAC+TGG + chr3.3:87651612-87651631 MS.gene014846:CDS 55.0%
ACGCGTCTTCCCCAATCGCT+TGG - chr3.3:87650420-87650439 None:intergenic 60.0%
AGTAGCGAGCAACATGGCGC+CGG + chr3.3:87650265-87650284 MS.gene014846:CDS 60.0%
CAAACCCCTGCAGCTGAACC+TGG + chr3.3:87651592-87651611 MS.gene014846:CDS 60.0%
GCTGGGGGTCCTATGCCTTA+TGG + chr3.3:87652042-87652061 MS.gene014846:CDS 60.0%
GCTTTCCCAGGTTCAGCTGC+AGG - chr3.3:87651601-87651620 None:intergenic 60.0%
GGCACTCTTTGCTGGTGCAC+CGG + chr3.3:87651498-87651517 MS.gene014846:CDS 60.0%
GGCGAGATCCTCCGAGTATC+CGG + chr3.3:87651183-87651202 MS.gene014846:CDS 60.0%
GGCTTGTAGGCCAACTGGGT+TGG + chr3.3:87650943-87650962 MS.gene014846:CDS 60.0%
GGGGCTGGGAGAGCTAAAAC+AGG - chr3.3:87651820-87651839 None:intergenic 60.0%
GGGGGGATGAGAGGTTCAGT+GGG + chr3.3:87650699-87650718 MS.gene014846:CDS 60.0%
GTTGTGGTCTTTCCCGGTCC+CGG - chr3.3:87651796-87651815 None:intergenic 60.0%
TGCTAGCAGTGTGGCGTTGC+CGG + chr3.3:87651774-87651793 MS.gene014846:CDS 60.0%
! ACAAGAGGAGGAGCCGGTTC+AGG + chr3.3:87651318-87651337 MS.gene014846:CDS 60.0%
! CAACATGGCGCCGGAATTGG+AGG + chr3.3:87650274-87650293 MS.gene014846:CDS 60.0%
! GAGCAACATGGCGCCGGAAT+TGG + chr3.3:87650271-87650290 MS.gene014846:CDS 60.0%
! GCACAGATCCATCTGGGGCT+GGG - chr3.3:87651834-87651853 None:intergenic 60.0%
! TGCACAGATCCATCTGGGGC+TGG - chr3.3:87651835-87651854 None:intergenic 60.0%
! TTAGCTCTCCCAGCCCCAGA+TGG + chr3.3:87651823-87651842 MS.gene014846:CDS 60.0%
! TTTGGCTCAGGCTCAGGCTC+TGG - chr3.3:87651400-87651419 None:intergenic 60.0%
!! AGTGTTGGTGGTGGTGGTGG+AGG + chr3.3:87650677-87650696 MS.gene014846:CDS 60.0%
!! GCTGGTAGTGTTGGTGGTGG+TGG + chr3.3:87650671-87650690 MS.gene014846:CDS 60.0%
!! GGTAGTGTTGGTGGTGGTGG+TGG + chr3.3:87650674-87650693 MS.gene014846:CDS 60.0%
!! GTGTTGGTGGTGGTGGTGGA+GGG + chr3.3:87650678-87650697 MS.gene014846:CDS 60.0%
!! TGGAGGGAGTGCTAGCAGTG+TGG + chr3.3:87651765-87651784 MS.gene014846:CDS 60.0%
!! TGTTGGTGGTGGTGGTGGAG+GGG + chr3.3:87650679-87650698 MS.gene014846:CDS 60.0%
!!! TGCGGTTTTGGCTCAGGCTC+AGG - chr3.3:87651406-87651425 None:intergenic 60.0%
GCTAGCAGTGTGGCGTTGCC+GGG + chr3.3:87651775-87651794 MS.gene014846:CDS 65.0%
GGGGGGGATGAGAGGTTCAG+TGG + chr3.3:87650698-87650717 MS.gene014846:CDS 65.0%
! CATGGCGCCGGAATTGGAGG+TGG + chr3.3:87650277-87650296 MS.gene014846:CDS 65.0%
! TCAGGCTCAGGCTCTGGTGG+AGG - chr3.3:87651394-87651413 None:intergenic 65.0%
! TCAGGCTCTGGTGGAGGTGG+CGG - chr3.3:87651388-87651407 None:intergenic 65.0%
!! GTTGGTGGTGGTGGTGGAGG+GGG + chr3.3:87650680-87650699 MS.gene014846:CDS 65.0%
!! TTGGTGGTGGTGGTGGAGGG+GGG + chr3.3:87650681-87650700 MS.gene014846:CDS 65.0%
AGTGTGGCGTTGCCGGGACC+GGG + chr3.3:87651781-87651800 MS.gene014846:CDS 70.0%
CAGTGTGGCGTTGCCGGGAC+CGG + chr3.3:87651780-87651799 MS.gene014846:CDS 70.0%
! AGGCTCTGGTGGAGGTGGCG+GGG - chr3.3:87651386-87651405 None:intergenic 70.0%
! CAGGCTCTGGTGGAGGTGGC+GGG - chr3.3:87651387-87651406 None:intergenic 70.0%
! GGCTCAGGCTCAGGCTCTGG+TGG - chr3.3:87651397-87651416 None:intergenic 70.0%
! GGCTCAGGCTCTGGTGGAGG+TGG - chr3.3:87651391-87651410 None:intergenic 70.0%
! GTGGTGGAGGGGGGGATGAG+AGG + chr3.3:87650690-87650709 MS.gene014846:CDS 70.0%
!! TGGTGGTGGTGGTGGAGGGG+GGG + chr3.3:87650682-87650701 MS.gene014846:CDS 70.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 87650197 87652122 87650197 ID=MS.gene014846
chr3.3 mRNA 87650197 87652122 87650197 ID=MS.gene014846.t1;Parent=MS.gene014846
chr3.3 exon 87650197 87652122 87650197 ID=MS.gene014846.t1.exon1;Parent=MS.gene014846.t1
chr3.3 CDS 87650197 87652122 87650197 ID=cds.MS.gene014846.t1;Parent=MS.gene014846.t1
Gene Sequence

>MS.gene014846

ATGACTTCGAGCACAATCCGAAAAGCGATTGGAGCGGTGAAGGATCAGACGAGTATTGGAATAGCGAAAGTAGCGAGCAACATGGCGCCGGAATTGGAGGTGGCGATTGTGAAAGCGACGAGTCACGACGAAGATCCGGCGAGTGAGAAGTATATAAGAGAGATCTTGAACTTGATGTCTTACTCGCGTGGTTATGTGAACGCGTGTGTTTCAGCTGTGTCCAAGCGATTGGGGAAGACGCGTGATTGGATTGTTGCGTTGAAAGCTCTTATACTTGTTCATCGACTGATGAATGATGGAACACCGATTTTCCAGGAAGAGATTATGTATGCTACGAGGAGAGGGACTAGGTTGTTGAATATGTCTGATTTTAGAGATGAGGCTCATTCAAGTTCTTGGGATCATTCTGCTTTTGTTAGGACTTATGCTTTGTATCTCGATCAGAGGCTTGAGTTGATGTTGTTTGATAGAAAAGCTGGTAGTGTTGGTGGTGGTGGTGGAGGGGGGGATGAGAGGTTCAGTGGGAGAGAAAATAATTTCAGGTCGCCACCGAATGAGTATGAGTATGGAGGTGGACAATTTAGAGGGGAAGGTGGGATGAGGAAGACGAGGTCGTATGGTGATGTGAATGAAGTGTCGGGGAATGATGATAGAAGGATTGTTACTGTGACTCCTTTGAGGGATATGAAGCCGGAGAGGATTTTCGGGAAGATGAGTCATTTGCAGAGGCTTTTGGATCGTTTCTTGGCTTGTAGGCCAACTGGGTTGGCTAAGAACAATAGGATGATTTTGATTGCATTGTATCCGTTGGTTAAGGAGAGTTTTCAGCTGTATGCTGATATATGCGAGGTTTTGGCAGTGTTGCTTGACAAATTCTTTGACATGGAGTATCCTGATTGTGTGAAGGCCTTTGATGCTTATGCAAGTGCTGCTAAACAGATTGATGAACTTGTGGCGTTTTACAATTGGTGTAAAGAAAGTGGTTTGGCGAGATCCTCCGAGTATCCGGAAGTTCAAAGAATTACTAGTAAGTTGTTGGAGACACTGGAGGAGTTTGTGAGGGATAGGGCTAAGAGGCCAAAGAGTCCAGAGAGGAAAGAGGAAGCTCCTAAGCTGGAAGTACAAGAGGAGGAGCCGGTTCAGGATATGAACGAGATCAAGGCACTGCCTGCACCTGAGAATTATACCCCGCCACCTCCACCAGAGCCTGAGCCTGAGCCAAAACCGCAGTTTACGGAGGACTTGGTGAATCTGAGGGAGGATGCAGTCACTGCAGACGATCAGGGTAATAGATTTGCGTTGGCACTCTTTGCTGGTGCACCGGCTAATAATAATGCAAATGGATCGTGGGAAGCCTTTCCATCAAATGGACAGCCGGAAGTAACTTCAGCTTGGCAAACCCCTGCAGCTGAACCTGGGAAAGCGGATTGGGAACTGGCATTGGTTGAGACAGCCAGCAATTTATCTAGGCAGAAGAATGCTTTAGGTGGTGGGCTTGATCCCTTATTGTTGAATGGCATGTATGATCAAGGAATGGTGAGGCAGCATGTGAGCACTTCCCAACTTAGTGGAGGGAGTGCTAGCAGTGTGGCGTTGCCGGGACCGGGAAAGACCACAACACCTGTTTTAGCTCTCCCAGCCCCAGATGGATCTGTGCAGCCAGTTAATCAGGATCCGTTCGCCGCATCATTGAACATTCCACCTCCCTCCTATGTGCAAATGGCCGAAATGGAGAAGAAGCAACAATTACTTGTGCATGAGCAGCAGCTGTGGCATCAGTATGCAAGGGATGGGATGCAAGGCCAGTCTAGCTTGAACAAAATGAACAATGGTACTGGATACTATGCTGGGGGTCCTATGCCTTATGGAATGCCCCCAGTTCATGGAATGGGACCTCCAAACGGGTATTACCATACTCCTATATGA
Protein sequence

>MS.gene014846.t1

MTSSTIRKAIGAVKDQTSIGIAKVASNMAPELEVAIVKATSHDEDPASEKYIREILNLMSYSRGYVNACVSAVSKRLGKTRDWIVALKALILVHRLMNDGTPIFQEEIMYATRRGTRLLNMSDFRDEAHSSSWDHSAFVRTYALYLDQRLELMLFDRKAGSVGGGGGGGDERFSGRENNFRSPPNEYEYGGGQFRGEGGMRKTRSYGDVNEVSGNDDRRIVTVTPLRDMKPERIFGKMSHLQRLLDRFLACRPTGLAKNNRMILIALYPLVKESFQLYADICEVLAVLLDKFFDMEYPDCVKAFDAYASAAKQIDELVAFYNWCKESGLARSSEYPEVQRITSKLLETLEEFVRDRAKRPKSPERKEEAPKLEVQEEEPVQDMNEIKALPAPENYTPPPPPEPEPEPKPQFTEDLVNLREDAVTADDQGNRFALALFAGAPANNNANGSWEAFPSNGQPEVTSAWQTPAAEPGKADWELALVETASNLSRQKNALGGGLDPLLLNGMYDQGMVRQHVSTSQLSGGSASSVALPGPGKTTTPVLALPAPDGSVQPVNQDPFAASLNIPPPSYVQMAEMEKKQQLLVHEQQLWHQYARDGMQGQSSLNKMNNGTGYYAGGPMPYGMPPVHGMGPPNGYYHTPI