Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80244.t1 | RHN70628.1 | 96.9 | 641 | 20 | 0 | 1 | 641 | 1 | 641 | 0.00E+00 | 1184.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80244.t1 | Q8S9J8 | 74.3 | 642 | 143 | 10 | 5 | 638 | 4 | 631 | 1.3e-242 | 840.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80244.t1 | A0A396J184 | 96.9 | 641 | 20 | 0 | 1 | 641 | 1 | 641 | 0.0e+00 | 1184.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050479 | MS.gene80244 | 0.812483 | 4.14E-51 | -1.69E-46 |
| MS.gene050547 | MS.gene80244 | 0.811511 | 6.75E-51 | -1.69E-46 |
| MS.gene051973 | MS.gene80244 | 0.821456 | 4.00E-53 | -1.69E-46 |
| MS.gene054884 | MS.gene80244 | 0.807287 | 5.44E-50 | -1.69E-46 |
| MS.gene054959 | MS.gene80244 | 0.80931 | 2.02E-50 | -1.69E-46 |
| MS.gene055719 | MS.gene80244 | 0.805722 | 1.16E-49 | -1.69E-46 |
| MS.gene056988 | MS.gene80244 | 0.829269 | 5.66E-55 | -1.69E-46 |
| MS.gene05914 | MS.gene80244 | -0.819666 | 1.03E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene80244 | MS.gene014846 | PPI |
| MS.gene80244 | MS.gene32646 | PPI |
| MS.gene072880 | MS.gene80244 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80244.t1 | MTR_3g106900 | 99.064 | 641 | 6 | 0 | 1 | 641 | 1 | 641 | 0.0 | 1313 |
| MS.gene80244.t1 | MTR_4g114960 | 57.231 | 650 | 220 | 11 | 1 | 641 | 1 | 601 | 0.0 | 746 |
| MS.gene80244.t1 | MTR_2g008170 | 45.963 | 644 | 275 | 11 | 1 | 618 | 1 | 597 | 3.44e-169 | 496 |
| MS.gene80244.t1 | MTR_8g008860 | 44.038 | 629 | 289 | 12 | 1 | 618 | 1 | 577 | 7.22e-166 | 487 |
| MS.gene80244.t1 | MTR_3g080490 | 43.503 | 354 | 151 | 5 | 4 | 357 | 3 | 307 | 2.86e-95 | 313 |
| MS.gene80244.t1 | MTR_2g037980 | 34.540 | 359 | 178 | 8 | 2 | 355 | 3 | 309 | 1.35e-59 | 210 |
| MS.gene80244.t1 | MTR_4g127440 | 30.169 | 590 | 316 | 13 | 2 | 577 | 3 | 510 | 5.40e-59 | 208 |
| MS.gene80244.t1 | MTR_4g115420 | 46.053 | 152 | 79 | 2 | 2 | 151 | 5 | 155 | 5.74e-38 | 148 |
| MS.gene80244.t1 | MTR_4g115420 | 28.493 | 365 | 199 | 9 | 227 | 577 | 172 | 488 | 7.56e-28 | 118 |
| MS.gene80244.t1 | MTR_8g106040 | 26.629 | 353 | 203 | 6 | 6 | 353 | 5 | 306 | 3.24e-33 | 133 |
| MS.gene80244.t1 | MTR_0530s0020 | 26.606 | 327 | 178 | 6 | 32 | 355 | 17 | 284 | 3.54e-30 | 125 |
| MS.gene80244.t1 | MTR_6g059380 | 34.437 | 151 | 95 | 1 | 4 | 150 | 7 | 157 | 6.14e-19 | 90.9 |
| MS.gene80244.t1 | MTR_1g033880 | 35.570 | 149 | 82 | 4 | 7 | 149 | 8 | 148 | 2.98e-17 | 84.7 |
| MS.gene80244.t1 | MTR_8g089850 | 30.220 | 182 | 117 | 5 | 1 | 178 | 1 | 176 | 8.03e-16 | 79.3 |
| MS.gene80244.t1 | MTR_3g086670 | 33.333 | 147 | 93 | 3 | 6 | 150 | 5 | 148 | 1.39e-15 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80244.t1 | AT2G25430 | 74.887 | 661 | 124 | 15 | 5 | 638 | 4 | 649 | 0.0 | 898 |
| MS.gene80244.t1 | AT4G32285 | 72.430 | 642 | 155 | 10 | 5 | 638 | 4 | 631 | 0.0 | 867 |
| MS.gene80244.t1 | AT4G32285 | 72.430 | 642 | 155 | 10 | 5 | 638 | 4 | 631 | 0.0 | 867 |
| MS.gene80244.t1 | AT1G03050 | 45.609 | 649 | 255 | 14 | 1 | 610 | 1 | 590 | 0.0 | 533 |
| MS.gene80244.t1 | AT4G02650 | 44.665 | 656 | 281 | 15 | 1 | 626 | 1 | 604 | 4.92e-164 | 483 |
| MS.gene80244.t1 | AT1G05020 | 40.199 | 403 | 180 | 6 | 4 | 400 | 3 | 350 | 5.81e-96 | 308 |
| MS.gene80244.t1 | AT4G25940 | 31.954 | 604 | 300 | 18 | 2 | 572 | 3 | 528 | 2.20e-72 | 245 |
| MS.gene80244.t1 | AT1G14910 | 33.645 | 535 | 262 | 18 | 2 | 514 | 3 | 466 | 1.43e-70 | 242 |
| MS.gene80244.t1 | AT1G14910 | 33.271 | 535 | 259 | 19 | 2 | 514 | 3 | 461 | 7.72e-67 | 232 |
| MS.gene80244.t1 | AT2G01600 | 30.146 | 617 | 309 | 19 | 2 | 594 | 3 | 521 | 7.01e-65 | 224 |
| MS.gene80244.t1 | AT5G57200 | 34.722 | 360 | 175 | 8 | 2 | 355 | 3 | 308 | 8.77e-62 | 216 |
| MS.gene80244.t1 | AT5G35200 | 43.333 | 150 | 82 | 2 | 6 | 153 | 11 | 159 | 1.80e-34 | 138 |
| MS.gene80244.t1 | AT5G35200 | 28.212 | 358 | 202 | 11 | 227 | 575 | 174 | 485 | 7.39e-24 | 106 |
| MS.gene80244.t1 | AT5G35200 | 43.333 | 150 | 82 | 2 | 6 | 153 | 11 | 159 | 1.80e-34 | 138 |
| MS.gene80244.t1 | AT5G35200 | 28.212 | 358 | 202 | 11 | 227 | 575 | 174 | 485 | 7.39e-24 | 106 |
| MS.gene80244.t1 | AT1G68110 | 26.836 | 354 | 186 | 11 | 7 | 353 | 5 | 292 | 1.88e-18 | 88.2 |
| MS.gene80244.t1 | AT1G33340 | 35.099 | 151 | 92 | 2 | 3 | 150 | 6 | 153 | 1.16e-17 | 85.9 |
| MS.gene80244.t1 | AT4G40080 | 34.014 | 147 | 91 | 4 | 10 | 150 | 11 | 157 | 1.08e-15 | 79.7 |
| MS.gene80244.t1 | AT1G25240 | 35.811 | 148 | 81 | 5 | 7 | 148 | 5 | 144 | 1.86e-15 | 79.0 |
| MS.gene80244.t1 | AT1G25240 | 35.811 | 148 | 81 | 5 | 7 | 148 | 6 | 145 | 1.93e-15 | 79.0 |
Find 213 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTTCCTCTCTGGACTCTT+TGG | 0.225582 | 3.4:-93096886 | None:intergenic |
| TGCTAGCAGTGTGGCGTTGC+CGG | 0.225948 | 3.4:+93097386 | MS.gene80244:CDS |
| CTAGTAATTCTTTGAACTTC+CGG | 0.266921 | 3.4:-93096814 | None:intergenic |
| TCAGGCTCTGGTGGAGGTGG+CGG | 0.270903 | 3.4:-93096997 | None:intergenic |
| TTCTTGGCTTGTAGGCCAAC+TGG | 0.276217 | 3.4:+93096550 | MS.gene80244:CDS |
| GGAGGTCCCATTCCATGAAC+TGG | 0.286179 | 3.4:-93097684 | None:intergenic |
| GAGTCATTTGCAGAGGCTTT+TGG | 0.294432 | 3.4:+93096522 | MS.gene80244:CDS |
| TGGATCGTTTCTTGGCTTGT+AGG | 0.296888 | 3.4:+93096542 | MS.gene80244:CDS |
| TGCACAGATCCATCTGGGGC+TGG | 0.298625 | 3.4:-93097444 | None:intergenic |
| ATACATGCCATTCAACAATA+AGG | 0.303811 | 3.4:-93097310 | None:intergenic |
| ATGAGGCTCATTCAAGTTCT+TGG | 0.306921 | 3.4:+93096185 | MS.gene80244:CDS |
| CAGGCTCTGGTGGAGGTGGC+GGG | 0.310633 | 3.4:-93096996 | None:intergenic |
| GTGGTGGAGGTGGGGATGAG+AGG | 0.323272 | 3.4:+93096302 | MS.gene80244:CDS |
| TCCTCCGTAAACTGCGGTTT+TGG | 0.326695 | 3.4:-93097027 | None:intergenic |
| AAGAATTACTAGTAAGTTGT+TGG | 0.329377 | 3.4:+93096825 | MS.gene80244:CDS |
| CAAACCCCTGCAGCTGAACC+TGG | 0.330516 | 3.4:+93097204 | MS.gene80244:CDS |
| TTTGCGTTGGCACTCTTTGC+TGG | 0.331820 | 3.4:+93097102 | MS.gene80244:CDS |
| TCTAGGCAGAAGAATGCTTT+AGG | 0.335417 | 3.4:+93097273 | MS.gene80244:CDS |
| ACAGGTGTTGTGGTCTTTCC+CGG | 0.343337 | 3.4:-93097411 | None:intergenic |
| GGTAGTGTTGGTGGTGGTGG+TGG | 0.343928 | 3.4:+93096286 | MS.gene80244:CDS |
| TGCCAAGCTGAAGTTACTTC+CGG | 0.346193 | 3.4:-93097183 | None:intergenic |
| GTGGGAGAGAAAATAATTTC+AGG | 0.350857 | 3.4:+93096329 | MS.gene80244:CDS |
| ACAAGAGGAGGAGCCGGTTC+AGG | 0.352668 | 3.4:+93096930 | MS.gene80244:CDS |
| TGCTGATATATGCGAGGTTT+TGG | 0.359618 | 3.4:+93096642 | MS.gene80244:CDS |
| TCAGGCTCAGGCTCTGGTGG+AGG | 0.361839 | 3.4:-93097003 | None:intergenic |
| TTGTTGCTTCTTCTCCATTT+CGG | 0.363887 | 3.4:-93097532 | None:intergenic |
| CAGTGTGGCGTTGCCGGGAC+CGG | 0.367032 | 3.4:+93097392 | MS.gene80244:CDS |
| GGAGCTTCCTCTTTCCTCTC+TGG | 0.367047 | 3.4:-93096895 | None:intergenic |
| GGCGAGATCCTCCGAGTATC+CGG | 0.368486 | 3.4:+93096795 | MS.gene80244:CDS |
| GCTGGTAGTGTTGGTGGTGG+TGG | 0.373659 | 3.4:+93096283 | MS.gene80244:CDS |
| TGCAGTCACTGCAGACGATC+AGG | 0.373792 | 3.4:+93097071 | MS.gene80244:CDS |
| TGTCGGGGAATGATGATAGA+AGG | 0.374281 | 3.4:+93096443 | MS.gene80244:CDS |
| GGCTCAGGCTCTGGTGGAGG+TGG | 0.378487 | 3.4:-93097000 | None:intergenic |
| GAGCAACATGGCGCCGGAAT+TGG | 0.378632 | 3.4:+93095883 | MS.gene80244:CDS |
| ATCTGTGCAGCCAGTTAATC+AGG | 0.381955 | 3.4:+93097458 | MS.gene80244:CDS |
| TGCATTGTATCCGTTGGTTA+AGG | 0.382273 | 3.4:+93096603 | MS.gene80244:CDS |
| TCAAAGGCCTTCACACAATC+AGG | 0.395986 | 3.4:-93096700 | None:intergenic |
| TTTGGCTCAGGCTCAGGCTC+TGG | 0.396279 | 3.4:-93097009 | None:intergenic |
| GCTTTCCCAGGTTCAGCTGC+AGG | 0.404670 | 3.4:-93097210 | None:intergenic |
| ATAATCTCTTCCTGGAAAAT+CGG | 0.405006 | 3.4:-93096112 | None:intergenic |
| TCAGCTGTGTCCAAGCGATT+GGG | 0.406593 | 3.4:+93096019 | MS.gene80244:CDS |
| CTTCTGCCTAGATAAATTGC+TGG | 0.406648 | 3.4:-93097262 | None:intergenic |
| CTGGGTTGGCTAAGAACAAT+AGG | 0.407625 | 3.4:+93096569 | MS.gene80244:CDS |
| TAGCATACATAATCTCTTCC+TGG | 0.407692 | 3.4:-93096120 | None:intergenic |
| ACTTCCGGCTGTCCATTTGA+TGG | 0.408563 | 3.4:-93097168 | None:intergenic |
| TATGGAGGTGGACAATTTAG+AGG | 0.412015 | 3.4:+93096373 | MS.gene80244:CDS |
| CTTTCCCAGGTTCAGCTGCA+GGG | 0.412658 | 3.4:-93097209 | None:intergenic |
| CTTGATCCCTTATTGTTGAA+TGG | 0.413257 | 3.4:+93097303 | MS.gene80244:CDS |
| GTTGTGGTCTTTCCCGGTCC+CGG | 0.413441 | 3.4:-93097405 | None:intergenic |
| GCGAACGGATCCTGATTAAC+TGG | 0.416129 | 3.4:-93097468 | None:intergenic |
| CTATGTGCAAATGGCCGAAA+TGG | 0.416745 | 3.4:+93097518 | MS.gene80244:CDS |
| CCGGCTAATAATAATGCAAA+TGG | 0.417868 | 3.4:+93097129 | MS.gene80244:CDS |
| TGGGAAGCCTTTCCATCAAA+TGG | 0.420108 | 3.4:+93097156 | MS.gene80244:CDS |
| GATTGGGGAAGACGCGTGAT+TGG | 0.420367 | 3.4:+93096035 | MS.gene80244:CDS |
| TTCAGCTGTGTCCAAGCGAT+TGG | 0.424563 | 3.4:+93096018 | MS.gene80244:CDS |
| ACAATCGCCACCTCCAATTC+CGG | 0.424606 | 3.4:-93095896 | None:intergenic |
| GCACAGATCCATCTGGGGCT+GGG | 0.426777 | 3.4:-93097443 | None:intergenic |
| TCCTCTTGTACTTCCAGCTT+AGG | 0.430283 | 3.4:-93096916 | None:intergenic |
| TGAGCCAAAACCGCAGTTTA+CGG | 0.430872 | 3.4:+93097023 | MS.gene80244:CDS |
| CCACCGAATGAGTATGAGTA+TGG | 0.432260 | 3.4:+93096355 | MS.gene80244:CDS |
| TGAACCTGGGAAAGCGGATT+GGG | 0.433469 | 3.4:+93097218 | MS.gene80244:CDS |
| ATCTCGTTCATATCCTGAAC+CGG | 0.433714 | 3.4:-93096943 | None:intergenic |
| ACTGGCTGCACAGATCCATC+TGG | 0.435637 | 3.4:-93097450 | None:intergenic |
| TTGTTACTGTGACTCCTTTG+AGG | 0.437358 | 3.4:+93096467 | MS.gene80244:CDS |
| AACAAAATGAACAATGGTAC+TGG | 0.437938 | 3.4:+93097624 | MS.gene80244:CDS |
| GCTAGCAGTGTGGCGTTGCC+GGG | 0.438220 | 3.4:+93097387 | MS.gene80244:CDS |
| CGGCTGTCCATTTGATGGAA+AGG | 0.439223 | 3.4:-93097163 | None:intergenic |
| TGAGGCTCATTCAAGTTCTT+GGG | 0.442141 | 3.4:+93096186 | MS.gene80244:CDS |
| AGCGGATTGGGAACTGGCAT+TGG | 0.444215 | 3.4:+93097230 | MS.gene80244:CDS |
| TACAATTGGTGTAAAGAAAG+TGG | 0.445885 | 3.4:+93096769 | MS.gene80244:CDS |
| GGCTCAGGCTCAGGCTCTGG+TGG | 0.448716 | 3.4:-93097006 | None:intergenic |
| ACCTCCCTCCTATGTGCAAA+TGG | 0.449011 | 3.4:+93097509 | MS.gene80244:CDS |
| TGGAGGAGTTTGTGAGGGAT+AGG | 0.450640 | 3.4:+93096854 | MS.gene80244:CDS |
| GGCACTCTTTGCTGGTGCAC+CGG | 0.450777 | 3.4:+93097110 | MS.gene80244:CDS |
| TACATGCCATTCAACAATAA+GGG | 0.450802 | 3.4:-93097309 | None:intergenic |
| AATGGTACTGGATACTATGC+TGG | 0.457007 | 3.4:+93097636 | MS.gene80244:CDS |
| TGGGAAAGCGGATTGGGAAC+TGG | 0.460427 | 3.4:+93097224 | MS.gene80244:CDS |
| AGACAGCCAGCAATTTATCT+AGG | 0.466153 | 3.4:+93097256 | MS.gene80244:CDS |
| GTGAGCACTTCCCAACTTAG+TGG | 0.466638 | 3.4:+93097357 | MS.gene80244:CDS |
| GGCTTGTAGGCCAACTGGGT+TGG | 0.467428 | 3.4:+93096555 | MS.gene80244:CDS |
| AGCACTCCCTCCACTAAGTT+GGG | 0.468854 | 3.4:-93097367 | None:intergenic |
| CTGAACCTGGGAAAGCGGAT+TGG | 0.473866 | 3.4:+93097217 | MS.gene80244:CDS |
| TCTTGGCTTGTAGGCCAACT+GGG | 0.474549 | 3.4:+93096551 | MS.gene80244:CDS |
| GACGAGTCACGACGAAGATC+CGG | 0.474753 | 3.4:+93095925 | MS.gene80244:CDS |
| TTAGAGGGGAAGGTGGGATG+AGG | 0.476333 | 3.4:+93096389 | MS.gene80244:CDS |
| GTGGGGATGAGAGGTTCAGT+GGG | 0.476909 | 3.4:+93096311 | MS.gene80244:CDS |
| TAGCACTCCCTCCACTAAGT+TGG | 0.477701 | 3.4:-93097368 | None:intergenic |
| CCATTTGCATTATTATTAGC+CGG | 0.478356 | 3.4:-93097129 | None:intergenic |
| CAGAAGAATGCTTTAGGTGG+TGG | 0.478692 | 3.4:+93097279 | MS.gene80244:CDS |
| TGTTACTGTGACTCCTTTGA+GGG | 0.482095 | 3.4:+93096468 | MS.gene80244:CDS |
| GACAATTTAGAGGGGAAGGT+GGG | 0.482887 | 3.4:+93096383 | MS.gene80244:CDS |
| GAGGTCCCATTCCATGAACT+GGG | 0.483754 | 3.4:-93097683 | None:intergenic |
| CATTTCGGCCATTTGCACAT+AGG | 0.483880 | 3.4:-93097517 | None:intergenic |
| ACCGCAGTTTACGGAGGACT+TGG | 0.485521 | 3.4:+93097032 | MS.gene80244:CDS |
| TAGTAAGTTGTTGGAGACAC+TGG | 0.489566 | 3.4:+93096834 | MS.gene80244:CDS |
| GGAGTATGGTAATACCCGTT+TGG | 0.490570 | 3.4:-93097705 | None:intergenic |
| AAAAGCGATTGGAGCGGTGA+AGG | 0.491311 | 3.4:+93095829 | MS.gene80244:CDS |
| GTGAAGGATCAGACGAGTAT+TGG | 0.495455 | 3.4:+93095845 | MS.gene80244:CDS |
| AGTTCCCAATCCGCTTTCCC+AGG | 0.496887 | 3.4:-93097222 | None:intergenic |
| CAACATGGCGCCGGAATTGG+AGG | 0.497407 | 3.4:+93095886 | MS.gene80244:CDS |
| GGTGATGTGAATGAAGTGTC+GGG | 0.503105 | 3.4:+93096427 | MS.gene80244:CDS |
| GAAAGAGGAAGCTCCTAAGC+TGG | 0.504819 | 3.4:+93096903 | MS.gene80244:CDS |
| GGACAATTTAGAGGGGAAGG+TGG | 0.509390 | 3.4:+93096382 | MS.gene80244:CDS |
| ACGCGTCTTCCCCAATCGCT+TGG | 0.510059 | 3.4:-93096029 | None:intergenic |
| TCTTTGAACTTCCGGATACT+CGG | 0.511861 | 3.4:-93096806 | None:intergenic |
| CCTCCATACTCATACTCATT+CGG | 0.512264 | 3.4:-93096358 | None:intergenic |
| CTGGCTGCACAGATCCATCT+GGG | 0.512279 | 3.4:-93097449 | None:intergenic |
| AGCACAATCCGAAAAGCGAT+TGG | 0.514162 | 3.4:+93095818 | MS.gene80244:CDS |
| GGGGTATAATTCTCAGGTGC+AGG | 0.514218 | 3.4:-93096976 | None:intergenic |
| ATGGAATGGGACCTCCAAAC+GGG | 0.516808 | 3.4:+93097691 | MS.gene80244:CDS |
| TTAGCTCTCCCAGCCCCAGA+TGG | 0.517956 | 3.4:+93097435 | MS.gene80244:CDS |
| TTCGGCCATTTGCACATAGG+AGG | 0.519643 | 3.4:-93097514 | None:intergenic |
| AGTGTGGCGTTGCCGGGACC+GGG | 0.520277 | 3.4:+93097393 | MS.gene80244:CDS |
| ATGTTGTTTGATAGAAAAGC+TGG | 0.520386 | 3.4:+93096265 | MS.gene80244:CDS |
| TTGGTGTAAAGAAAGTGGTT+TGG | 0.520726 | 3.4:+93096774 | MS.gene80244:CDS |
| ATGTTCAATGATGCGGCGAA+CGG | 0.523167 | 3.4:-93097483 | None:intergenic |
| GGTGGCGGGGTATAATTCTC+AGG | 0.525615 | 3.4:-93096982 | None:intergenic |
| ATGCTACGAGGAGAGGGACT+AGG | 0.526966 | 3.4:+93096137 | MS.gene80244:CDS |
| ATCTTCCCGAAAATCCTCTC+CGG | 0.528840 | 3.4:-93096499 | None:intergenic |
| TCCTTTGAGGGATATGAAGC+CGG | 0.529821 | 3.4:+93096480 | MS.gene80244:CDS |
| GGAAGTACAAGAGGAGGAGC+CGG | 0.530728 | 3.4:+93096924 | MS.gene80244:CDS |
| AAACCCCTGCAGCTGAACCT+GGG | 0.532015 | 3.4:+93097205 | MS.gene80244:CDS |
| TCAGGATATGAACGAGATCA+AGG | 0.532360 | 3.4:+93096948 | MS.gene80244:CDS |
| GGAGGAGTTTGTGAGGGATA+GGG | 0.532775 | 3.4:+93096855 | MS.gene80244:CDS |
| AGCTGTGGCATCAGTATGCA+AGG | 0.533057 | 3.4:+93097574 | MS.gene80244:CDS |
| CGGAGGACTTGGTGAATCTG+AGG | 0.533271 | 3.4:+93097043 | MS.gene80244:CDS |
| CTTATATACTTCTCACTCGC+CGG | 0.534004 | 3.4:-93095944 | None:intergenic |
| AGAAGAATGCTTTAGGTGGT+GGG | 0.534327 | 3.4:+93097280 | MS.gene80244:CDS |
| TGCAGCTGAACCTGGGAAAG+CGG | 0.538233 | 3.4:+93097212 | MS.gene80244:CDS |
| AGGCTCTGGTGGAGGTGGCG+GGG | 0.540099 | 3.4:-93096995 | None:intergenic |
| AAAGAGTCCAGAGAGGAAAG+AGG | 0.540156 | 3.4:+93096888 | MS.gene80244:CDS |
| GATAGAAAAGCTGGTAGTGT+TGG | 0.540496 | 3.4:+93096274 | MS.gene80244:CDS |
| CATGGCGCCGGAATTGGAGG+TGG | 0.543914 | 3.4:+93095889 | MS.gene80244:CDS |
| GGGGCTGGGAGAGCTAAAAC+AGG | 0.544685 | 3.4:-93097429 | None:intergenic |
| TTTCCCAGGTTCAGCTGCAG+GGG | 0.545857 | 3.4:-93097208 | None:intergenic |
| GGTGGACAATTTAGAGGGGA+AGG | 0.546935 | 3.4:+93096379 | MS.gene80244:CDS |
| ATGGTACTGGATACTATGCT+GGG | 0.551613 | 3.4:+93097637 | MS.gene80244:CDS |
| ATGGAGGTGGACAATTTAGA+GGG | 0.551974 | 3.4:+93096374 | MS.gene80244:CDS |
| ATGAGGAAGACGAGGTCGTA+TGG | 0.552855 | 3.4:+93096406 | MS.gene80244:CDS |
| GTTCATCGACTGATGAATGA+TGG | 0.553308 | 3.4:+93096085 | MS.gene80244:CDS |
| TGGCATCAGTATGCAAGGGA+TGG | 0.556853 | 3.4:+93097579 | MS.gene80244:CDS |
| CTTTCCATCAAATGGACAGC+CGG | 0.557840 | 3.4:+93097164 | MS.gene80244:CDS |
| TCAGGGTAATAGATTTGCGT+TGG | 0.558037 | 3.4:+93097089 | MS.gene80244:CDS |
| TTGTGAGGGATAGGGCTAAG+AGG | 0.559656 | 3.4:+93096863 | MS.gene80244:CDS |
| TCCTAAGCTGGAAGTACAAG+AGG | 0.562685 | 3.4:+93096915 | MS.gene80244:CDS |
| CAGCTGTGTCCAAGCGATTG+GGG | 0.563623 | 3.4:+93096020 | MS.gene80244:CDS |
| GGTGGGGATGAGAGGTTCAG+TGG | 0.563806 | 3.4:+93096310 | MS.gene80244:CDS |
| CATGGAATGGGACCTCCAAA+CGG | 0.565171 | 3.4:+93097690 | MS.gene80244:CDS |
| TAATAATGCAAATGGATCGT+GGG | 0.567598 | 3.4:+93097137 | MS.gene80244:CDS |
| AGAAAAGCTGGTAGTGTTGG+TGG | 0.569447 | 3.4:+93096277 | MS.gene80244:CDS |
| AATGAGTATGAGTATGGAGG+TGG | 0.576242 | 3.4:+93096361 | MS.gene80244:CDS |
| AGCACTTGCATAAGCATCAA+AGG | 0.577337 | 3.4:-93096716 | None:intergenic |
| TCGGCCATTTGCACATAGGA+GGG | 0.577744 | 3.4:-93097513 | None:intergenic |
| AGTAGCGAGCAACATGGCGC+CGG | 0.578249 | 3.4:+93095877 | MS.gene80244:CDS |
| ATTTGCACATAGGAGGGAGG+TGG | 0.579870 | 3.4:-93097507 | None:intergenic |
| TTTGATTGCATTGTATCCGT+TGG | 0.580416 | 3.4:+93096597 | MS.gene80244:CDS |
| AGCCGGAAGTAACTTCAGCT+TGG | 0.581334 | 3.4:+93097181 | MS.gene80244:CDS |
| GTATGGTAATACCCGTTTGG+AGG | 0.584432 | 3.4:-93097702 | None:intergenic |
| TTATGTATGCTACGAGGAGA+GGG | 0.585734 | 3.4:+93096131 | MS.gene80244:CDS |
| TATGCAAGGGATGGGATGCA+AGG | 0.585796 | 3.4:+93097588 | MS.gene80244:CDS |
| ATAATAATGCAAATGGATCG+TGG | 0.587702 | 3.4:+93097136 | MS.gene80244:CDS |
| ATTATGTATGCTACGAGGAG+AGG | 0.593045 | 3.4:+93096130 | MS.gene80244:CDS |
| TTGTTCTTAGCCAACCCAGT+TGG | 0.593548 | 3.4:-93096565 | None:intergenic |
| TTGAATGGCATGTATGATCA+AGG | 0.598862 | 3.4:+93097318 | MS.gene80244:CDS |
| GGAAGATGAGTCATTTGCAG+AGG | 0.598868 | 3.4:+93096515 | MS.gene80244:CDS |
| GCTTGACAAATTCTTTGACA+TGG | 0.599304 | 3.4:+93096672 | MS.gene80244:CDS |
| ATGCTTTGTATCTCGATCAG+AGG | 0.601861 | 3.4:+93096233 | MS.gene80244:CDS |
| TCCGGCTTCATATCCCTCAA+AGG | 0.602526 | 3.4:-93096481 | None:intergenic |
| AACTTGATGTCTTACTCGCG+TGG | 0.604269 | 3.4:+93095977 | MS.gene80244:CDS |
| TGGTGATGTGAATGAAGTGT+CGG | 0.612307 | 3.4:+93096426 | MS.gene80244:CDS |
| GACACTGGAGGAGTTTGTGA+GGG | 0.619044 | 3.4:+93096849 | MS.gene80244:CDS |
| GCAGTCACTGCAGACGATCA+GGG | 0.621548 | 3.4:+93097072 | MS.gene80244:CDS |
| TAAGCTGGAAGTACAAGAGG+AGG | 0.625162 | 3.4:+93096918 | MS.gene80244:CDS |
| AAAGCTGGTAGTGTTGGTGG+TGG | 0.625469 | 3.4:+93096280 | MS.gene80244:CDS |
| TGGAGGTGGACAATTTAGAG+GGG | 0.626675 | 3.4:+93096375 | MS.gene80244:CDS |
| TTGTGCATGAGCAGCAGCTG+TGG | 0.626683 | 3.4:+93097559 | MS.gene80244:CDS |
| AGACACTGGAGGAGTTTGTG+AGG | 0.628043 | 3.4:+93096848 | MS.gene80244:CDS |
| GGTCCCATTCCATGAACTGG+GGG | 0.628379 | 3.4:-93097681 | None:intergenic |
| AGGTGGAATGTTCAATGATG+CGG | 0.628537 | 3.4:-93097490 | None:intergenic |
| AGCACTTCCCAACTTAGTGG+AGG | 0.634431 | 3.4:+93097360 | MS.gene80244:CDS |
| GCCATTTGCACATAGGAGGG+AGG | 0.634464 | 3.4:-93097510 | None:intergenic |
| TGGTACTGGATACTATGCTG+GGG | 0.635659 | 3.4:+93097638 | MS.gene80244:CDS |
| GGCATCAGTATGCAAGGGAT+GGG | 0.637136 | 3.4:+93097580 | MS.gene80244:CDS |
| ACCAAGTCCTCCGTAAACTG+CGG | 0.641216 | 3.4:-93097033 | None:intergenic |
| GGAGGACTTGGTGAATCTGA+GGG | 0.641575 | 3.4:+93097044 | MS.gene80244:CDS |
| TAAACAGATTGATGAACTTG+TGG | 0.645164 | 3.4:+93096741 | MS.gene80244:CDS |
| AGCTTGAACAAAATGAACAA+TGG | 0.645990 | 3.4:+93097618 | MS.gene80244:CDS |
| CCATACTCATACTCATTCGG+TGG | 0.649853 | 3.4:-93096355 | None:intergenic |
| TGAAAACTCTCCTTAACCAA+CGG | 0.650974 | 3.4:-93096613 | None:intergenic |
| GAGAGCTAAAACAGGTGTTG+TGG | 0.651335 | 3.4:-93097421 | None:intergenic |
| GCTGTATGCTGATATATGCG+AGG | 0.654854 | 3.4:+93096636 | MS.gene80244:CDS |
| AGCGAAAGTAGCGAGCAACA+TGG | 0.657386 | 3.4:+93095871 | MS.gene80244:CDS |
| TGAGGGATATGAAGCCGGAG+AGG | 0.659064 | 3.4:+93096485 | MS.gene80244:CDS |
| CCGAATGAGTATGAGTATGG+AGG | 0.662053 | 3.4:+93096358 | MS.gene80244:CDS |
| GCACTTCCCAACTTAGTGGA+GGG | 0.664190 | 3.4:+93097361 | MS.gene80244:CDS |
| TAAGTTGTTGGAGACACTGG+AGG | 0.669834 | 3.4:+93096837 | MS.gene80244:CDS |
| GCTGTGGCATCAGTATGCAA+GGG | 0.669933 | 3.4:+93097575 | MS.gene80244:CDS |
| AGGCAGAAGAATGCTTTAGG+TGG | 0.677279 | 3.4:+93097276 | MS.gene80244:CDS |
| TGGCATGTATGATCAAGGAA+TGG | 0.678938 | 3.4:+93097323 | MS.gene80244:CDS |
| TTGAACTTCCGGATACTCGG+AGG | 0.680206 | 3.4:-93096803 | None:intergenic |
| GGACTTGGTGAATCTGAGGG+AGG | 0.680416 | 3.4:+93097047 | MS.gene80244:CDS |
| TGGAGGGAGTGCTAGCAGTG+TGG | 0.687452 | 3.4:+93097377 | MS.gene80244:CDS |
| AGGTCCCATTCCATGAACTG+GGG | 0.690448 | 3.4:-93097682 | None:intergenic |
| GGTACTGGATACTATGCTGG+GGG | 0.690788 | 3.4:+93097639 | MS.gene80244:CDS |
| GGAGTATCCTGATTGTGTGA+AGG | 0.692728 | 3.4:+93096693 | MS.gene80244:CDS |
| GCCAAAACCGCAGTTTACGG+AGG | 0.695554 | 3.4:+93097026 | MS.gene80244:CDS |
| GTGATGTGAATGAAGTGTCG+GGG | 0.703090 | 3.4:+93096428 | MS.gene80244:CDS |
| TGGCTGCACAGATCCATCTG+GGG | 0.707777 | 3.4:-93097448 | None:intergenic |
| AATCCGAAAAGCGATTGGAG+CGG | 0.709364 | 3.4:+93095823 | MS.gene80244:CDS |
| AAGGTGGGATGAGGAAGACG+AGG | 0.712639 | 3.4:+93096398 | MS.gene80244:CDS |
| AGAGGCCAAAGAGTCCAGAG+AGG | 0.718357 | 3.4:+93096881 | MS.gene80244:CDS |
| TGTATGATCAAGGAATGGTG+AGG | 0.740576 | 3.4:+93097328 | MS.gene80244:CDS |
| AAGAGATTATGTATGCTACG+AGG | 0.775372 | 3.4:+93096125 | MS.gene80244:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AAGAATTACTAGTAAGTTGT+TGG | + | chr3.4:93096825-93096844 | MS.gene80244:CDS | 25.0% |
| AACAAAATGAACAATGGTAC+TGG | + | chr3.4:93097624-93097643 | MS.gene80244:CDS | 30.0% | |
| AGCTTGAACAAAATGAACAA+TGG | + | chr3.4:93097618-93097637 | MS.gene80244:CDS | 30.0% | |
| ATAATAATGCAAATGGATCG+TGG | + | chr3.4:93097136-93097155 | MS.gene80244:CDS | 30.0% | |
| ATAATCTCTTCCTGGAAAAT+CGG | - | chr3.4:93096115-93096134 | None:intergenic | 30.0% | |
| ATACATGCCATTCAACAATA+AGG | - | chr3.4:93097313-93097332 | None:intergenic | 30.0% | |
| CCATTTGCATTATTATTAGC+CGG | - | chr3.4:93097132-93097151 | None:intergenic | 30.0% | |
| CTAGTAATTCTTTGAACTTC+CGG | - | chr3.4:93096817-93096836 | None:intergenic | 30.0% | |
| TAAACAGATTGATGAACTTG+TGG | + | chr3.4:93096741-93096760 | MS.gene80244:CDS | 30.0% | |
| TAATAATGCAAATGGATCGT+GGG | + | chr3.4:93097137-93097156 | MS.gene80244:CDS | 30.0% | |
| TACAATTGGTGTAAAGAAAG+TGG | + | chr3.4:93096769-93096788 | MS.gene80244:CDS | 30.0% | |
| TACATGCCATTCAACAATAA+GGG | - | chr3.4:93097312-93097331 | None:intergenic | 30.0% | |
| ! | ATGTTGTTTGATAGAAAAGC+TGG | + | chr3.4:93096265-93096284 | MS.gene80244:CDS | 30.0% |
| !! | TATGTCTGATTTTAGAGATG+AGG | + | chr3.4:93096168-93096187 | MS.gene80244:CDS | 30.0% |
| AAGAGATTATGTATGCTACG+AGG | + | chr3.4:93096125-93096144 | MS.gene80244:CDS | 35.0% | |
| CCGGCTAATAATAATGCAAA+TGG | + | chr3.4:93097129-93097148 | MS.gene80244:CDS | 35.0% | |
| CTTGATCCCTTATTGTTGAA+TGG | + | chr3.4:93097303-93097322 | MS.gene80244:CDS | 35.0% | |
| GCTTGACAAATTCTTTGACA+TGG | + | chr3.4:93096672-93096691 | MS.gene80244:CDS | 35.0% | |
| GTGGGAGAGAAAATAATTTC+AGG | + | chr3.4:93096329-93096348 | MS.gene80244:CDS | 35.0% | |
| TAGCATACATAATCTCTTCC+TGG | - | chr3.4:93096123-93096142 | None:intergenic | 35.0% | |
| TGAAAACTCTCCTTAACCAA+CGG | - | chr3.4:93096616-93096635 | None:intergenic | 35.0% | |
| TTGAATGGCATGTATGATCA+AGG | + | chr3.4:93097318-93097337 | MS.gene80244:CDS | 35.0% | |
| TTGGTGTAAAGAAAGTGGTT+TGG | + | chr3.4:93096774-93096793 | MS.gene80244:CDS | 35.0% | |
| TTTGATTGCATTGTATCCGT+TGG | + | chr3.4:93096597-93096616 | MS.gene80244:CDS | 35.0% | |
| ! | AACTTGTGGCGTTTTACAAT+TGG | + | chr3.4:93096755-93096774 | MS.gene80244:CDS | 35.0% |
| ! | TCATTTTGTTCAAGCTAGAC+TGG | - | chr3.4:93097614-93097633 | None:intergenic | 35.0% |
| ! | TTGTTGCTTCTTCTCCATTT+CGG | - | chr3.4:93097535-93097554 | None:intergenic | 35.0% |
| AATGAGTATGAGTATGGAGG+TGG | + | chr3.4:93096361-93096380 | MS.gene80244:CDS | 40.0% | |
| AGACAGCCAGCAATTTATCT+AGG | + | chr3.4:93097256-93097275 | MS.gene80244:CDS | 40.0% | |
| AGCACTTGCATAAGCATCAA+AGG | - | chr3.4:93096719-93096738 | None:intergenic | 40.0% | |
| AGGTGGAATGTTCAATGATG+CGG | - | chr3.4:93097493-93097512 | None:intergenic | 40.0% | |
| ATCTCGTTCATATCCTGAAC+CGG | - | chr3.4:93096946-93096965 | None:intergenic | 40.0% | |
| ATGCTTTGTATCTCGATCAG+AGG | + | chr3.4:93096233-93096252 | MS.gene80244:CDS | 40.0% | |
| ATGGAGGTGGACAATTTAGA+GGG | + | chr3.4:93096374-93096393 | MS.gene80244:CDS | 40.0% | |
| ATTATGTATGCTACGAGGAG+AGG | + | chr3.4:93096130-93096149 | MS.gene80244:CDS | 40.0% | |
| CCTCCATACTCATACTCATT+CGG | - | chr3.4:93096361-93096380 | None:intergenic | 40.0% | |
| CTTATATACTTCTCACTCGC+CGG | - | chr3.4:93095947-93095966 | None:intergenic | 40.0% | |
| CTTCTGCCTAGATAAATTGC+TGG | - | chr3.4:93097265-93097284 | None:intergenic | 40.0% | |
| TAGTAAGTTGTTGGAGACAC+TGG | + | chr3.4:93096834-93096853 | MS.gene80244:CDS | 40.0% | |
| TATGGAGGTGGACAATTTAG+AGG | + | chr3.4:93096373-93096392 | MS.gene80244:CDS | 40.0% | |
| TCAGGATATGAACGAGATCA+AGG | + | chr3.4:93096948-93096967 | MS.gene80244:CDS | 40.0% | |
| TCAGGGTAATAGATTTGCGT+TGG | + | chr3.4:93097089-93097108 | MS.gene80244:CDS | 40.0% | |
| TCTAGGCAGAAGAATGCTTT+AGG | + | chr3.4:93097273-93097292 | MS.gene80244:CDS | 40.0% | |
| TCTTTGAACTTCCGGATACT+CGG | - | chr3.4:93096809-93096828 | None:intergenic | 40.0% | |
| TGGCATGTATGATCAAGGAA+TGG | + | chr3.4:93097323-93097342 | MS.gene80244:CDS | 40.0% | |
| TGTATGATCAAGGAATGGTG+AGG | + | chr3.4:93097328-93097347 | MS.gene80244:CDS | 40.0% | |
| TGTTACTGTGACTCCTTTGA+GGG | + | chr3.4:93096468-93096487 | MS.gene80244:CDS | 40.0% | |
| TTATGTATGCTACGAGGAGA+GGG | + | chr3.4:93096131-93096150 | MS.gene80244:CDS | 40.0% | |
| TTGTTACTGTGACTCCTTTG+AGG | + | chr3.4:93096467-93096486 | MS.gene80244:CDS | 40.0% | |
| ! | AATGGTACTGGATACTATGC+TGG | + | chr3.4:93097636-93097655 | MS.gene80244:CDS | 40.0% |
| ! | AGAAGAATGCTTTAGGTGGT+GGG | + | chr3.4:93097280-93097299 | MS.gene80244:CDS | 40.0% |
| ! | ATGAGGCTCATTCAAGTTCT+TGG | + | chr3.4:93096185-93096204 | MS.gene80244:CDS | 40.0% |
| ! | ATGGTACTGGATACTATGCT+GGG | + | chr3.4:93097637-93097656 | MS.gene80244:CDS | 40.0% |
| ! | GATAGAAAAGCTGGTAGTGT+TGG | + | chr3.4:93096274-93096293 | MS.gene80244:CDS | 40.0% |
| ! | GTTCATCGACTGATGAATGA+TGG | + | chr3.4:93096085-93096104 | MS.gene80244:CDS | 40.0% |
| ! | TGAGGCTCATTCAAGTTCTT+GGG | + | chr3.4:93096186-93096205 | MS.gene80244:CDS | 40.0% |
| ! | TGCATTGTATCCGTTGGTTA+AGG | + | chr3.4:93096603-93096622 | MS.gene80244:CDS | 40.0% |
| ! | TGCTGATATATGCGAGGTTT+TGG | + | chr3.4:93096642-93096661 | MS.gene80244:CDS | 40.0% |
| ! | TGGTGATGTGAATGAAGTGT+CGG | + | chr3.4:93096426-93096445 | MS.gene80244:CDS | 40.0% |
| !! | GGGATCATTCTGCTTTTGTT+AGG | + | chr3.4:93096206-93096225 | MS.gene80244:CDS | 40.0% |
| AAAGAGTCCAGAGAGGAAAG+AGG | + | chr3.4:93096888-93096907 | MS.gene80244:CDS | 45.0% | |
| AACTTGATGTCTTACTCGCG+TGG | + | chr3.4:93095977-93095996 | MS.gene80244:CDS | 45.0% | |
| AATCCGAAAAGCGATTGGAG+CGG | + | chr3.4:93095823-93095842 | MS.gene80244:CDS | 45.0% | |
| AGCACAATCCGAAAAGCGAT+TGG | + | chr3.4:93095818-93095837 | MS.gene80244:CDS | 45.0% | |
| ATCTGTGCAGCCAGTTAATC+AGG | + | chr3.4:93097458-93097477 | MS.gene80244:CDS | 45.0% | |
| ATCTTCCCGAAAATCCTCTC+CGG | - | chr3.4:93096502-93096521 | None:intergenic | 45.0% | |
| ATGTTCAATGATGCGGCGAA+CGG | - | chr3.4:93097486-93097505 | None:intergenic | 45.0% | |
| CATTTCGGCCATTTGCACAT+AGG | - | chr3.4:93097520-93097539 | None:intergenic | 45.0% | |
| CCACCGAATGAGTATGAGTA+TGG | + | chr3.4:93096355-93096374 | MS.gene80244:CDS | 45.0% | |
| CCATACTCATACTCATTCGG+TGG | - | chr3.4:93096358-93096377 | None:intergenic | 45.0% | |
| CCGAATGAGTATGAGTATGG+AGG | + | chr3.4:93096358-93096377 | MS.gene80244:CDS | 45.0% | |
| CTATGTGCAAATGGCCGAAA+TGG | + | chr3.4:93097518-93097537 | MS.gene80244:CDS | 45.0% | |
| CTTTCCATCAAATGGACAGC+CGG | + | chr3.4:93097164-93097183 | MS.gene80244:CDS | 45.0% | |
| GACAATTTAGAGGGGAAGGT+GGG | + | chr3.4:93096383-93096402 | MS.gene80244:CDS | 45.0% | |
| GCTGTATGCTGATATATGCG+AGG | + | chr3.4:93096636-93096655 | MS.gene80244:CDS | 45.0% | |
| GGAAGATGAGTCATTTGCAG+AGG | + | chr3.4:93096515-93096534 | MS.gene80244:CDS | 45.0% | |
| GGAGTATGGTAATACCCGTT+TGG | - | chr3.4:93097708-93097727 | None:intergenic | 45.0% | |
| GTATGGTAATACCCGTTTGG+AGG | - | chr3.4:93097705-93097724 | None:intergenic | 45.0% | |
| GTGAAGGATCAGACGAGTAT+TGG | + | chr3.4:93095845-93095864 | MS.gene80244:CDS | 45.0% | |
| TAAGTTGTTGGAGACACTGG+AGG | + | chr3.4:93096837-93096856 | MS.gene80244:CDS | 45.0% | |
| TCAAAGGCCTTCACACAATC+AGG | - | chr3.4:93096703-93096722 | None:intergenic | 45.0% | |
| TCCTCTTGTACTTCCAGCTT+AGG | - | chr3.4:93096919-93096938 | None:intergenic | 45.0% | |
| TCTTTCCTCTCTGGACTCTT+TGG | - | chr3.4:93096889-93096908 | None:intergenic | 45.0% | |
| TGAGCCAAAACCGCAGTTTA+CGG | + | chr3.4:93097023-93097042 | MS.gene80244:CDS | 45.0% | |
| TGCCAAGCTGAAGTTACTTC+CGG | - | chr3.4:93097186-93097205 | None:intergenic | 45.0% | |
| TGGAGGTGGACAATTTAGAG+GGG | + | chr3.4:93096375-93096394 | MS.gene80244:CDS | 45.0% | |
| TGGGAAGCCTTTCCATCAAA+TGG | + | chr3.4:93097156-93097175 | MS.gene80244:CDS | 45.0% | |
| TGTCGGGGAATGATGATAGA+AGG | + | chr3.4:93096443-93096462 | MS.gene80244:CDS | 45.0% | |
| TTGTTCTTAGCCAACCCAGT+TGG | - | chr3.4:93096568-93096587 | None:intergenic | 45.0% | |
| ! | AGAAAAGCTGGTAGTGTTGG+TGG | + | chr3.4:93096277-93096296 | MS.gene80244:CDS | 45.0% |
| ! | AGGCAGAAGAATGCTTTAGG+TGG | + | chr3.4:93097276-93097295 | MS.gene80244:CDS | 45.0% |
| ! | ATGAAGCCGGAGAGGATTTT+CGG | + | chr3.4:93096493-93096512 | MS.gene80244:CDS | 45.0% |
| ! | CAGAAGAATGCTTTAGGTGG+TGG | + | chr3.4:93097279-93097298 | MS.gene80244:CDS | 45.0% |
| ! | GAGAGCTAAAACAGGTGTTG+TGG | - | chr3.4:93097424-93097443 | None:intergenic | 45.0% |
| ! | GAGGCTTTTGGATCGTTTCT+TGG | + | chr3.4:93096534-93096553 | MS.gene80244:CDS | 45.0% |
| ! | GAGTCATTTGCAGAGGCTTT+TGG | + | chr3.4:93096522-93096541 | MS.gene80244:CDS | 45.0% |
| ! | GGAGTATCCTGATTGTGTGA+AGG | + | chr3.4:93096693-93096712 | MS.gene80244:CDS | 45.0% |
| ! | GGTGATGTGAATGAAGTGTC+GGG | + | chr3.4:93096427-93096446 | MS.gene80244:CDS | 45.0% |
| ! | TAAGCTGGAAGTACAAGAGG+AGG | + | chr3.4:93096918-93096937 | MS.gene80244:CDS | 45.0% |
| ! | TCCTAAGCTGGAAGTACAAG+AGG | + | chr3.4:93096915-93096934 | MS.gene80244:CDS | 45.0% |
| ! | TCCTTTGAGGGATATGAAGC+CGG | + | chr3.4:93096480-93096499 | MS.gene80244:CDS | 45.0% |
| ! | TGGTACTGGATACTATGCTG+GGG | + | chr3.4:93097638-93097657 | MS.gene80244:CDS | 45.0% |
| !! | CTGGGTTGGCTAAGAACAAT+AGG | + | chr3.4:93096569-93096588 | MS.gene80244:CDS | 45.0% |
| !! | GTGATGTGAATGAAGTGTCG+GGG | + | chr3.4:93096428-93096447 | MS.gene80244:CDS | 45.0% |
| !! | TGGATCGTTTCTTGGCTTGT+AGG | + | chr3.4:93096542-93096561 | MS.gene80244:CDS | 45.0% |
| !!! | TGATGGAACACCGATTTTCC+AGG | + | chr3.4:93096102-93096121 | MS.gene80244:CDS | 45.0% |
| AAAAGCGATTGGAGCGGTGA+AGG | + | chr3.4:93095829-93095848 | MS.gene80244:CDS | 50.0% | |
| AATGCCCCCAGTTCATGGAA+TGG | + | chr3.4:93097677-93097696 | MS.gene80244:CDS | 50.0% | |
| ACAATCGCCACCTCCAATTC+CGG | - | chr3.4:93095899-93095918 | None:intergenic | 50.0% | |
| ACCAAGTCCTCCGTAAACTG+CGG | - | chr3.4:93097036-93097055 | None:intergenic | 50.0% | |
| ACCTCCCTCCTATGTGCAAA+TGG | + | chr3.4:93097509-93097528 | MS.gene80244:CDS | 50.0% | |
| ACTTCCGGCTGTCCATTTGA+TGG | - | chr3.4:93097171-93097190 | None:intergenic | 50.0% | |
| AGACACTGGAGGAGTTTGTG+AGG | + | chr3.4:93096848-93096867 | MS.gene80244:CDS | 50.0% | |
| AGCACTCCCTCCACTAAGTT+GGG | - | chr3.4:93097370-93097389 | None:intergenic | 50.0% | |
| AGCACTTCCCAACTTAGTGG+AGG | + | chr3.4:93097360-93097379 | MS.gene80244:CDS | 50.0% | |
| AGCCGGAAGTAACTTCAGCT+TGG | + | chr3.4:93097181-93097200 | MS.gene80244:CDS | 50.0% | |
| AGCGAAAGTAGCGAGCAACA+TGG | + | chr3.4:93095871-93095890 | MS.gene80244:CDS | 50.0% | |
| AGCTGTGGCATCAGTATGCA+AGG | + | chr3.4:93097574-93097593 | MS.gene80244:CDS | 50.0% | |
| AGGTCCCATTCCATGAACTG+GGG | - | chr3.4:93097685-93097704 | None:intergenic | 50.0% | |
| ATGAGGAAGACGAGGTCGTA+TGG | + | chr3.4:93096406-93096425 | MS.gene80244:CDS | 50.0% | |
| ATGCCCCCAGTTCATGGAAT+GGG | + | chr3.4:93097678-93097697 | MS.gene80244:CDS | 50.0% | |
| ATGGAATGGGACCTCCAAAC+GGG | + | chr3.4:93097691-93097710 | MS.gene80244:CDS | 50.0% | |
| ATTTGCACATAGGAGGGAGG+TGG | - | chr3.4:93097510-93097529 | None:intergenic | 50.0% | |
| CATGGAATGGGACCTCCAAA+CGG | + | chr3.4:93097690-93097709 | MS.gene80244:CDS | 50.0% | |
| CGGCTGTCCATTTGATGGAA+AGG | - | chr3.4:93097166-93097185 | None:intergenic | 50.0% | |
| GAAAGAGGAAGCTCCTAAGC+TGG | + | chr3.4:93096903-93096922 | MS.gene80244:CDS | 50.0% | |
| GACACTGGAGGAGTTTGTGA+GGG | + | chr3.4:93096849-93096868 | MS.gene80244:CDS | 50.0% | |
| GAGGTCCCATTCCATGAACT+GGG | - | chr3.4:93097686-93097705 | None:intergenic | 50.0% | |
| GCACTTCCCAACTTAGTGGA+GGG | + | chr3.4:93097361-93097380 | MS.gene80244:CDS | 50.0% | |
| GCGAACGGATCCTGATTAAC+TGG | - | chr3.4:93097471-93097490 | None:intergenic | 50.0% | |
| GCTGTGGCATCAGTATGCAA+GGG | + | chr3.4:93097575-93097594 | MS.gene80244:CDS | 50.0% | |
| GGACAATTTAGAGGGGAAGG+TGG | + | chr3.4:93096382-93096401 | MS.gene80244:CDS | 50.0% | |
| GGAGGAGTTTGTGAGGGATA+GGG | + | chr3.4:93096855-93096874 | MS.gene80244:CDS | 50.0% | |
| GGCATCAGTATGCAAGGGAT+GGG | + | chr3.4:93097580-93097599 | MS.gene80244:CDS | 50.0% | |
| GGGGTATAATTCTCAGGTGC+AGG | - | chr3.4:93096979-93096998 | None:intergenic | 50.0% | |
| GGTGGACAATTTAGAGGGGA+AGG | + | chr3.4:93096379-93096398 | MS.gene80244:CDS | 50.0% | |
| GTGAGCACTTCCCAACTTAG+TGG | + | chr3.4:93097357-93097376 | MS.gene80244:CDS | 50.0% | |
| TAGCACTCCCTCCACTAAGT+TGG | - | chr3.4:93097371-93097390 | None:intergenic | 50.0% | |
| TATGCAAGGGATGGGATGCA+AGG | + | chr3.4:93097588-93097607 | MS.gene80244:CDS | 50.0% | |
| TATGGAATGCCCCCAGTTCA+TGG | + | chr3.4:93097672-93097691 | MS.gene80244:CDS | 50.0% | |
| TCAGCTGTGTCCAAGCGATT+GGG | + | chr3.4:93096019-93096038 | MS.gene80244:CDS | 50.0% | |
| TCCGGCTTCATATCCCTCAA+AGG | - | chr3.4:93096484-93096503 | None:intergenic | 50.0% | |
| TCGGCCATTTGCACATAGGA+GGG | - | chr3.4:93097516-93097535 | None:intergenic | 50.0% | |
| TGGAGGAGTTTGTGAGGGAT+AGG | + | chr3.4:93096854-93096873 | MS.gene80244:CDS | 50.0% | |
| TGGCATCAGTATGCAAGGGA+TGG | + | chr3.4:93097579-93097598 | MS.gene80244:CDS | 50.0% | |
| TTCAGCTGTGTCCAAGCGAT+TGG | + | chr3.4:93096018-93096037 | MS.gene80244:CDS | 50.0% | |
| TTCGGCCATTTGCACATAGG+AGG | - | chr3.4:93097517-93097536 | None:intergenic | 50.0% | |
| TTGAACTTCCGGATACTCGG+AGG | - | chr3.4:93096806-93096825 | None:intergenic | 50.0% | |
| TTGTGAGGGATAGGGCTAAG+AGG | + | chr3.4:93096863-93096882 | MS.gene80244:CDS | 50.0% | |
| ! | ACAGGTGTTGTGGTCTTTCC+CGG | - | chr3.4:93097414-93097433 | None:intergenic | 50.0% |
| ! | GGTACTGGATACTATGCTGG+GGG | + | chr3.4:93097639-93097658 | MS.gene80244:CDS | 50.0% |
| ! | TCCTCCGTAAACTGCGGTTT+TGG | - | chr3.4:93097030-93097049 | None:intergenic | 50.0% |
| ! | TGAACCTGGGAAAGCGGATT+GGG | + | chr3.4:93097218-93097237 | MS.gene80244:CDS | 50.0% |
| ! | TGAAGCCGGAGAGGATTTTC+GGG | + | chr3.4:93096494-93096513 | MS.gene80244:CDS | 50.0% |
| ! | TTTGCGTTGGCACTCTTTGC+TGG | + | chr3.4:93097102-93097121 | MS.gene80244:CDS | 50.0% |
| !! | AAAGCTGGTAGTGTTGGTGG+TGG | + | chr3.4:93096280-93096299 | MS.gene80244:CDS | 50.0% |
| !! | GGAGGACTTGGTGAATCTGA+GGG | + | chr3.4:93097044-93097063 | MS.gene80244:CDS | 50.0% |
| !! | TCACCGCTCCAATCGCTTTT+CGG | - | chr3.4:93095829-93095848 | None:intergenic | 50.0% |
| !! | TCTTGGCTTGTAGGCCAACT+GGG | + | chr3.4:93096551-93096570 | MS.gene80244:CDS | 50.0% |
| !! | TGAACTGGGGGCATTCCATA+AGG | - | chr3.4:93097672-93097691 | None:intergenic | 50.0% |
| !! | TTCTTGGCTTGTAGGCCAAC+TGG | + | chr3.4:93096550-93096569 | MS.gene80244:CDS | 50.0% |
| !!! | GTAAACTGCGGTTTTGGCTC+AGG | - | chr3.4:93097024-93097043 | None:intergenic | 50.0% |
| AAACCCCTGCAGCTGAACCT+GGG | + | chr3.4:93097205-93097224 | MS.gene80244:CDS | 55.0% | |
| AAGGTGGGATGAGGAAGACG+AGG | + | chr3.4:93096398-93096417 | MS.gene80244:CDS | 55.0% | |
| ACCGCAGTTTACGGAGGACT+TGG | + | chr3.4:93097032-93097051 | MS.gene80244:CDS | 55.0% | |
| ACTGGCTGCACAGATCCATC+TGG | - | chr3.4:93097453-93097472 | None:intergenic | 55.0% | |
| AGAGGCCAAAGAGTCCAGAG+AGG | + | chr3.4:93096881-93096900 | MS.gene80244:CDS | 55.0% | |
| AGTTCCCAATCCGCTTTCCC+AGG | - | chr3.4:93097225-93097244 | None:intergenic | 55.0% | |
| ATGCTACGAGGAGAGGGACT+AGG | + | chr3.4:93096137-93096156 | MS.gene80244:CDS | 55.0% | |
| CAGCTGTGTCCAAGCGATTG+GGG | + | chr3.4:93096020-93096039 | MS.gene80244:CDS | 55.0% | |
| CTGAACCTGGGAAAGCGGAT+TGG | + | chr3.4:93097217-93097236 | MS.gene80244:CDS | 55.0% | |
| CTGGCTGCACAGATCCATCT+GGG | - | chr3.4:93097452-93097471 | None:intergenic | 55.0% | |
| CTTTCCCAGGTTCAGCTGCA+GGG | - | chr3.4:93097212-93097231 | None:intergenic | 55.0% | |
| GACGAGTCACGACGAAGATC+CGG | + | chr3.4:93095925-93095944 | MS.gene80244:CDS | 55.0% | |
| GATTGGGGAAGACGCGTGAT+TGG | + | chr3.4:93096035-93096054 | MS.gene80244:CDS | 55.0% | |
| GCAGTCACTGCAGACGATCA+GGG | + | chr3.4:93097072-93097091 | MS.gene80244:CDS | 55.0% | |
| GCCAAAACCGCAGTTTACGG+AGG | + | chr3.4:93097026-93097045 | MS.gene80244:CDS | 55.0% | |
| GCCATTTGCACATAGGAGGG+AGG | - | chr3.4:93097513-93097532 | None:intergenic | 55.0% | |
| GGAGCTTCCTCTTTCCTCTC+TGG | - | chr3.4:93096898-93096917 | None:intergenic | 55.0% | |
| GGAGGTCCCATTCCATGAAC+TGG | - | chr3.4:93097687-93097706 | None:intergenic | 55.0% | |
| GGTCCCATTCCATGAACTGG+GGG | - | chr3.4:93097684-93097703 | None:intergenic | 55.0% | |
| GTGGGGATGAGAGGTTCAGT+GGG | + | chr3.4:93096311-93096330 | MS.gene80244:CDS | 55.0% | |
| TGAGGGATATGAAGCCGGAG+AGG | + | chr3.4:93096485-93096504 | MS.gene80244:CDS | 55.0% | |
| TGCAGCTGAACCTGGGAAAG+CGG | + | chr3.4:93097212-93097231 | MS.gene80244:CDS | 55.0% | |
| TGCAGTCACTGCAGACGATC+AGG | + | chr3.4:93097071-93097090 | MS.gene80244:CDS | 55.0% | |
| TGGCTGCACAGATCCATCTG+GGG | - | chr3.4:93097451-93097470 | None:intergenic | 55.0% | |
| TTAGAGGGGAAGGTGGGATG+AGG | + | chr3.4:93096389-93096408 | MS.gene80244:CDS | 55.0% | |
| TTGTGCATGAGCAGCAGCTG+TGG | + | chr3.4:93097559-93097578 | MS.gene80244:CDS | 55.0% | |
| TTTCCCAGGTTCAGCTGCAG+GGG | - | chr3.4:93097211-93097230 | None:intergenic | 55.0% | |
| ! | GGAAGTACAAGAGGAGGAGC+CGG | + | chr3.4:93096924-93096943 | MS.gene80244:CDS | 55.0% |
| !! | AGCGGATTGGGAACTGGCAT+TGG | + | chr3.4:93097230-93097249 | MS.gene80244:CDS | 55.0% |
| !! | CGGAGGACTTGGTGAATCTG+AGG | + | chr3.4:93097043-93097062 | MS.gene80244:CDS | 55.0% |
| !! | GGACTTGGTGAATCTGAGGG+AGG | + | chr3.4:93097047-93097066 | MS.gene80244:CDS | 55.0% |
| !! | GGGGGCATTCCATAAGGCAT+AGG | - | chr3.4:93097666-93097685 | None:intergenic | 55.0% |
| !! | GGTGGCGGGGTATAATTCTC+AGG | - | chr3.4:93096985-93097004 | None:intergenic | 55.0% |
| !! | TGGGAAAGCGGATTGGGAAC+TGG | + | chr3.4:93097224-93097243 | MS.gene80244:CDS | 55.0% |
| ACGCGTCTTCCCCAATCGCT+TGG | - | chr3.4:93096032-93096051 | None:intergenic | 60.0% | |
| AGTAGCGAGCAACATGGCGC+CGG | + | chr3.4:93095877-93095896 | MS.gene80244:CDS | 60.0% | |
| CAAACCCCTGCAGCTGAACC+TGG | + | chr3.4:93097204-93097223 | MS.gene80244:CDS | 60.0% | |
| GCTGGGGGTCCTATGCCTTA+TGG | + | chr3.4:93097654-93097673 | MS.gene80244:CDS | 60.0% | |
| GCTTTCCCAGGTTCAGCTGC+AGG | - | chr3.4:93097213-93097232 | None:intergenic | 60.0% | |
| GGCACTCTTTGCTGGTGCAC+CGG | + | chr3.4:93097110-93097129 | MS.gene80244:CDS | 60.0% | |
| GGCGAGATCCTCCGAGTATC+CGG | + | chr3.4:93096795-93096814 | MS.gene80244:CDS | 60.0% | |
| GGCTTGTAGGCCAACTGGGT+TGG | + | chr3.4:93096555-93096574 | MS.gene80244:CDS | 60.0% | |
| GGGGCTGGGAGAGCTAAAAC+AGG | - | chr3.4:93097432-93097451 | None:intergenic | 60.0% | |
| GGTGGGGATGAGAGGTTCAG+TGG | + | chr3.4:93096310-93096329 | MS.gene80244:CDS | 60.0% | |
| GTTGTGGTCTTTCCCGGTCC+CGG | - | chr3.4:93097408-93097427 | None:intergenic | 60.0% | |
| TGCTAGCAGTGTGGCGTTGC+CGG | + | chr3.4:93097386-93097405 | MS.gene80244:CDS | 60.0% | |
| ! | ACAAGAGGAGGAGCCGGTTC+AGG | + | chr3.4:93096930-93096949 | MS.gene80244:CDS | 60.0% |
| ! | CAACATGGCGCCGGAATTGG+AGG | + | chr3.4:93095886-93095905 | MS.gene80244:CDS | 60.0% |
| ! | GAGCAACATGGCGCCGGAAT+TGG | + | chr3.4:93095883-93095902 | MS.gene80244:CDS | 60.0% |
| ! | GCACAGATCCATCTGGGGCT+GGG | - | chr3.4:93097446-93097465 | None:intergenic | 60.0% |
| ! | TGCACAGATCCATCTGGGGC+TGG | - | chr3.4:93097447-93097466 | None:intergenic | 60.0% |
| ! | TTAGCTCTCCCAGCCCCAGA+TGG | + | chr3.4:93097435-93097454 | MS.gene80244:CDS | 60.0% |
| ! | TTTGGCTCAGGCTCAGGCTC+TGG | - | chr3.4:93097012-93097031 | None:intergenic | 60.0% |
| !! | AGTGTTGGTGGTGGTGGTGG+AGG | + | chr3.4:93096289-93096308 | MS.gene80244:CDS | 60.0% |
| !! | GCTGGTAGTGTTGGTGGTGG+TGG | + | chr3.4:93096283-93096302 | MS.gene80244:CDS | 60.0% |
| !! | GGTAGTGTTGGTGGTGGTGG+TGG | + | chr3.4:93096286-93096305 | MS.gene80244:CDS | 60.0% |
| !! | TGGAGGGAGTGCTAGCAGTG+TGG | + | chr3.4:93097377-93097396 | MS.gene80244:CDS | 60.0% |
| !! | TTGGTGGTGGTGGTGGAGGT+GGG | + | chr3.4:93096293-93096312 | MS.gene80244:CDS | 60.0% |
| !!! | TGCGGTTTTGGCTCAGGCTC+AGG | - | chr3.4:93097018-93097037 | None:intergenic | 60.0% |
| GCTAGCAGTGTGGCGTTGCC+GGG | + | chr3.4:93097387-93097406 | MS.gene80244:CDS | 65.0% | |
| ! | CATGGCGCCGGAATTGGAGG+TGG | + | chr3.4:93095889-93095908 | MS.gene80244:CDS | 65.0% |
| ! | GTGGTGGAGGTGGGGATGAG+AGG | + | chr3.4:93096302-93096321 | MS.gene80244:CDS | 65.0% |
| ! | TCAGGCTCAGGCTCTGGTGG+AGG | - | chr3.4:93097006-93097025 | None:intergenic | 65.0% |
| ! | TCAGGCTCTGGTGGAGGTGG+CGG | - | chr3.4:93097000-93097019 | None:intergenic | 65.0% |
| !! | GTTGGTGGTGGTGGTGGAGG+TGG | + | chr3.4:93096292-93096311 | MS.gene80244:CDS | 65.0% |
| !! | TGGTGGTGGTGGTGGAGGTG+GGG | + | chr3.4:93096294-93096313 | MS.gene80244:CDS | 65.0% |
| AGTGTGGCGTTGCCGGGACC+GGG | + | chr3.4:93097393-93097412 | MS.gene80244:CDS | 70.0% | |
| CAGTGTGGCGTTGCCGGGAC+CGG | + | chr3.4:93097392-93097411 | MS.gene80244:CDS | 70.0% | |
| ! | AGGCTCTGGTGGAGGTGGCG+GGG | - | chr3.4:93096998-93097017 | None:intergenic | 70.0% |
| ! | CAGGCTCTGGTGGAGGTGGC+GGG | - | chr3.4:93096999-93097018 | None:intergenic | 70.0% |
| ! | GGCTCAGGCTCAGGCTCTGG+TGG | - | chr3.4:93097009-93097028 | None:intergenic | 70.0% |
| ! | GGCTCAGGCTCTGGTGGAGG+TGG | - | chr3.4:93097003-93097022 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 93095809 | 93097734 | 93095809 | ID=MS.gene80244 |
| chr3.4 | mRNA | 93095809 | 93097734 | 93095809 | ID=MS.gene80244.t1;Parent=MS.gene80244 |
| chr3.4 | exon | 93095809 | 93097734 | 93095809 | ID=MS.gene80244.t1.exon1;Parent=MS.gene80244.t1 |
| chr3.4 | CDS | 93095809 | 93097734 | 93095809 | ID=cds.MS.gene80244.t1;Parent=MS.gene80244.t1 |
| Gene Sequence |
| Protein sequence |
