Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015052.t1 | XP_013461819.1 | 94.9 | 703 | 3 | 4 | 1 | 675 | 1 | 698 | 0.00E+00 | 1277.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015052.t1 | Q9ZQB9 | 76.1 | 711 | 122 | 9 | 1 | 675 | 1 | 699 | 4.0e-300 | 1031.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015052.t1 | A0A072V1K1 | 94.9 | 703 | 3 | 4 | 1 | 675 | 1 | 698 | 0.0e+00 | 1277.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene015052 | MS.gene022823 | PPI |
| MS.gene015052 | MS.gene014716 | PPI |
| MS.gene073023 | MS.gene015052 | PPI |
| MS.gene40373 | MS.gene015052 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015052.t1 | MTR_3g103500 | 94.879 | 703 | 3 | 4 | 1 | 675 | 1 | 698 | 0.0 | 1347 |
| MS.gene015052.t1 | MTR_3g103500 | 92.339 | 496 | 6 | 3 | 1 | 469 | 1 | 491 | 0.0 | 934 |
| MS.gene015052.t1 | MTR_3g109040 | 64.011 | 703 | 209 | 11 | 1 | 675 | 1 | 687 | 0.0 | 877 |
| MS.gene015052.t1 | MTR_3g109040 | 64.544 | 691 | 204 | 10 | 10 | 675 | 2 | 676 | 0.0 | 875 |
| MS.gene015052.t1 | MTR_4g006010 | 62.640 | 712 | 216 | 9 | 1 | 675 | 1 | 699 | 0.0 | 857 |
| MS.gene015052.t1 | MTR_6g007807 | 65.131 | 651 | 178 | 8 | 53 | 674 | 35 | 665 | 0.0 | 815 |
| MS.gene015052.t1 | MTR_8g012320 | 65.639 | 649 | 193 | 7 | 46 | 674 | 63 | 701 | 0.0 | 809 |
| MS.gene015052.t1 | MTR_1g061510 | 42.075 | 530 | 275 | 5 | 149 | 674 | 19 | 520 | 6.39e-148 | 440 |
| MS.gene015052.t1 | MTR_1g061340 | 41.176 | 527 | 278 | 5 | 149 | 671 | 19 | 517 | 9.72e-147 | 437 |
| MS.gene015052.t1 | MTR_1g061270 | 41.635 | 526 | 276 | 3 | 149 | 671 | 19 | 516 | 4.18e-146 | 435 |
| MS.gene015052.t1 | MTR_1g061280 | 40.678 | 531 | 283 | 5 | 149 | 675 | 19 | 521 | 3.15e-145 | 433 |
| MS.gene015052.t1 | MTR_1g492700 | 45.513 | 468 | 226 | 4 | 205 | 671 | 85 | 524 | 1.52e-144 | 432 |
| MS.gene015052.t1 | MTR_7g103590 | 41.509 | 530 | 278 | 5 | 149 | 674 | 28 | 529 | 1.57e-144 | 432 |
| MS.gene015052.t1 | MTR_4g055520 | 41.746 | 527 | 280 | 7 | 158 | 674 | 33 | 542 | 2.02e-139 | 419 |
| MS.gene015052.t1 | MTR_7g101950 | 40.377 | 530 | 285 | 6 | 149 | 674 | 25 | 527 | 3.05e-138 | 415 |
| MS.gene015052.t1 | MTR_4g055520 | 46.512 | 430 | 217 | 4 | 158 | 577 | 33 | 459 | 1.48e-135 | 407 |
| MS.gene015052.t1 | MTR_4g055520 | 43.304 | 448 | 239 | 4 | 228 | 674 | 29 | 462 | 1.13e-130 | 394 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015052.t1 | AT4G07960 | 75.105 | 711 | 129 | 9 | 1 | 675 | 1 | 699 | 0.0 | 1030 |
| MS.gene015052.t1 | AT4G07960 | 75.105 | 711 | 129 | 9 | 1 | 675 | 1 | 699 | 0.0 | 1030 |
| MS.gene015052.t1 | AT4G31590 | 64.356 | 707 | 205 | 8 | 1 | 675 | 1 | 692 | 0.0 | 894 |
| MS.gene015052.t1 | AT2G24630 | 62.963 | 702 | 221 | 8 | 1 | 675 | 1 | 690 | 0.0 | 877 |
| MS.gene015052.t1 | AT2G24630 | 62.963 | 702 | 221 | 8 | 1 | 675 | 1 | 690 | 0.0 | 877 |
| MS.gene015052.t1 | AT3G28180 | 63.623 | 690 | 197 | 10 | 18 | 675 | 6 | 673 | 0.0 | 836 |
| MS.gene015052.t1 | AT3G07330 | 63.622 | 646 | 203 | 7 | 51 | 675 | 48 | 682 | 0.0 | 818 |
| MS.gene015052.t1 | AT3G07330 | 63.622 | 646 | 203 | 7 | 51 | 675 | 48 | 682 | 0.0 | 818 |
| MS.gene015052.t1 | AT5G22740 | 41.431 | 531 | 279 | 5 | 149 | 674 | 29 | 532 | 2.24e-143 | 429 |
| MS.gene015052.t1 | AT5G03760 | 40.713 | 533 | 272 | 6 | 152 | 674 | 32 | 530 | 4.05e-140 | 420 |
| MS.gene015052.t1 | AT1G23480 | 40.678 | 531 | 282 | 5 | 149 | 674 | 51 | 553 | 3.95e-139 | 419 |
| MS.gene015052.t1 | AT1G23480 | 40.678 | 531 | 282 | 5 | 149 | 674 | 51 | 553 | 3.95e-139 | 419 |
| MS.gene015052.t1 | AT2G35650 | 41.199 | 517 | 269 | 5 | 149 | 661 | 51 | 536 | 1.59e-138 | 417 |
| MS.gene015052.t1 | AT5G16190 | 40.987 | 527 | 278 | 6 | 149 | 671 | 6 | 503 | 3.13e-137 | 412 |
| MS.gene015052.t1 | AT4G13410 | 40.228 | 527 | 278 | 7 | 149 | 671 | 43 | 536 | 6.64e-137 | 412 |
| MS.gene015052.t1 | AT1G23480 | 41.223 | 507 | 265 | 5 | 173 | 674 | 3 | 481 | 6.78e-136 | 408 |
| MS.gene015052.t1 | AT5G16190 | 45.638 | 447 | 238 | 4 | 149 | 591 | 6 | 451 | 3.58e-135 | 405 |
| MS.gene015052.t1 | AT5G16190 | 43.376 | 468 | 235 | 4 | 205 | 671 | 4 | 442 | 1.89e-134 | 402 |
| MS.gene015052.t1 | AT2G35650 | 43.668 | 458 | 226 | 4 | 205 | 661 | 38 | 464 | 2.21e-134 | 404 |
| MS.gene015052.t1 | AT2G35650 | 43.668 | 458 | 226 | 4 | 205 | 661 | 38 | 464 | 2.21e-134 | 404 |
| MS.gene015052.t1 | AT1G24070 | 39.889 | 539 | 289 | 7 | 137 | 671 | 44 | 551 | 2.78e-134 | 406 |
| MS.gene015052.t1 | AT3G56000 | 40.377 | 530 | 279 | 6 | 153 | 674 | 26 | 526 | 4.50e-131 | 397 |
| MS.gene015052.t1 | AT5G16190 | 38.571 | 560 | 278 | 7 | 149 | 671 | 6 | 536 | 5.00e-130 | 394 |
| MS.gene015052.t1 | AT4G16590 | 37.879 | 528 | 259 | 8 | 149 | 671 | 56 | 519 | 1.27e-117 | 362 |
| MS.gene015052.t1 | AT1G23480 | 41.205 | 415 | 216 | 2 | 261 | 674 | 21 | 408 | 1.08e-112 | 345 |
| MS.gene015052.t1 | AT4G13410 | 41.133 | 406 | 206 | 3 | 267 | 671 | 2 | 375 | 3.59e-110 | 338 |
| MS.gene015052.t1 | AT2G35650 | 41.337 | 404 | 206 | 3 | 259 | 661 | 5 | 378 | 1.19e-108 | 334 |
| MS.gene015052.t1 | AT4G13410 | 47.516 | 322 | 165 | 3 | 149 | 467 | 43 | 363 | 3.55e-99 | 310 |
| MS.gene015052.t1 | AT1G24070 | 44.624 | 372 | 189 | 5 | 137 | 505 | 44 | 401 | 8.48e-98 | 306 |
Find 148 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAATCAAAGATTGTGTAAT+TGG | 0.117866 | 3.2:+85875794 | None:intergenic |
| CAGCAGCTCTATGAGCTTTA+AGG | 0.164902 | 3.2:+85876552 | None:intergenic |
| AGTTCATCAATGTCCCAATT+TGG | 0.224089 | 3.2:+85876680 | None:intergenic |
| TATTGCAGCAGTGTGTAATT+TGG | 0.228223 | 3.2:-85875867 | MS.gene015052:CDS |
| CTGTAAGCTTCGTAAGATTC+AGG | 0.244033 | 3.2:+85874980 | None:intergenic |
| GATAGATTGGTTCTTTGTTT+AGG | 0.261285 | 3.2:-85876140 | MS.gene015052:CDS |
| CAAATTGCTCCTGCATTGTT+TGG | 0.262621 | 3.2:-85876518 | MS.gene015052:CDS |
| AAATGGCACCTTTGTTCAAT+TGG | 0.282770 | 3.2:-85876754 | MS.gene015052:CDS |
| AATTACACAATCTTTGATTA+AGG | 0.283313 | 3.2:-85875792 | MS.gene015052:CDS |
| CTTGTTGTTCCACTTCAAAA+TGG | 0.290451 | 3.2:+85875287 | None:intergenic |
| GGGCACCGACATTTGGTGTT+AGG | 0.298422 | 3.2:-85876277 | MS.gene015052:CDS |
| GTCAAACGCCGCGTCGCTTC+TGG | 0.301307 | 3.2:-85876482 | MS.gene015052:CDS |
| TTGGTTGGTCTAGACTTAAT+TGG | 0.308940 | 3.2:-85873887 | MS.gene015052:CDS |
| CATTGAACCCAAAGAAATTA+AGG | 0.311415 | 3.2:+85875251 | None:intergenic |
| TCTGAAACATCACCACCTTT+TGG | 0.311924 | 3.2:+85876080 | None:intergenic |
| CTACAGGATAATGACGAATT+AGG | 0.322967 | 3.2:-85875388 | MS.gene015052:intron |
| CTTAATTTCTTTGGGTTCAA+TGG | 0.325307 | 3.2:-85875250 | MS.gene015052:CDS |
| ACTATGAAAGGAAAAGCTTT+TGG | 0.326733 | 3.2:+85874286 | None:intergenic |
| GCTGTTCGAGCTCATCTTCA+TGG | 0.327528 | 3.2:-85875145 | MS.gene015052:CDS |
| TTTCACATAGCTACAATTCA+TGG | 0.336791 | 3.2:+85875676 | None:intergenic |
| GAGGACCACTGTGGAGGATA+TGG | 0.337343 | 3.2:-85875173 | MS.gene015052:CDS |
| GATGACCCTCGTTGATGCTT+TGG | 0.351008 | 3.2:+85874112 | None:intergenic |
| AATAGAGTGAACGAGTAAAA+TGG | 0.354129 | 3.2:+85874415 | None:intergenic |
| AATGGCACCTTTGTTCAATT+GGG | 0.361924 | 3.2:-85876753 | MS.gene015052:CDS |
| CCGACATGGTGTTCTCAAAT+AGG | 0.365826 | 3.2:+85874254 | None:intergenic |
| TTGTTTGCCTGATGTCATAA+AGG | 0.368029 | 3.2:-85874909 | MS.gene015052:CDS |
| TCTTTCATTTCTTCCAGATC+AGG | 0.374102 | 3.2:+85874085 | None:intergenic |
| TATTCAGAGTATAGATAGAT+TGG | 0.375619 | 3.2:-85876153 | MS.gene015052:CDS |
| TTTGGGTTCAATGGTACTGC+TGG | 0.378978 | 3.2:-85875241 | MS.gene015052:CDS |
| CAGCAGCATAGATGGCATTC+TGG | 0.380899 | 3.2:-85874953 | MS.gene015052:CDS |
| GATGTTTCAGATCTTGAATC+TGG | 0.386991 | 3.2:-85876068 | MS.gene015052:CDS |
| GATCTTGAATCTGGAGATAA+GGG | 0.389985 | 3.2:-85876059 | MS.gene015052:CDS |
| TTAAGGAGGAGGTTCATAAA+TGG | 0.393056 | 3.2:-85875775 | MS.gene015052:CDS |
| GTATTTGAAGGAACTTGCTT+TGG | 0.396618 | 3.2:-85874002 | MS.gene015052:CDS |
| AAGAAATGAAAGAGGAAATC+AGG | 0.399107 | 3.2:-85874075 | MS.gene015052:CDS |
| TCAATGGTACTGCTGGAGTT+TGG | 0.399721 | 3.2:-85875234 | MS.gene015052:CDS |
| AGGGTCATCAGCACCTGATC+TGG | 0.403205 | 3.2:-85874098 | MS.gene015052:CDS |
| ACCTTGGCCTTTATGACATC+AGG | 0.403380 | 3.2:+85874902 | None:intergenic |
| ACAGAAAACAGCAGCATAGA+TGG | 0.412430 | 3.2:-85874961 | MS.gene015052:CDS |
| TGCTCCACATCTTGAATTGT+GGG | 0.424265 | 3.2:-85876297 | MS.gene015052:CDS |
| GAATTGTGGGCACCGACATT+TGG | 0.427447 | 3.2:-85876284 | MS.gene015052:CDS |
| TGCTGGAGTTTGGAGAATAA+AGG | 0.431597 | 3.2:-85875224 | MS.gene015052:CDS |
| ACGCACTTCCTAGCTGGAAT+AGG | 0.438031 | 3.2:+85874203 | None:intergenic |
| TAATCAAAGATTGTGTAATT+GGG | 0.439751 | 3.2:+85875795 | None:intergenic |
| AGATAAGGGTTTCTTCCCTA+TGG | 0.441243 | 3.2:-85876045 | MS.gene015052:CDS |
| AGATCTTGAATCTGGAGATA+AGG | 0.445844 | 3.2:-85876060 | MS.gene015052:CDS |
| CTTTCTTGCAGATAAGCATA+TGG | 0.446258 | 3.2:-85874489 | MS.gene015052:intron |
| AGTTTGGAGAATAAAGGCTT+TGG | 0.460085 | 3.2:-85875218 | MS.gene015052:CDS |
| AAATTCAATGCTATGATCTC+AGG | 0.461079 | 3.2:-85874226 | MS.gene015052:CDS |
| CTTAAAGCTCATAGAGCTGC+TGG | 0.464353 | 3.2:-85876551 | MS.gene015052:CDS |
| TCTTCAAGAGACAAAGGAAA+AGG | 0.476352 | 3.2:-85876608 | MS.gene015052:CDS |
| GGCACCGACATTTGGTGTTA+GGG | 0.481814 | 3.2:-85876276 | MS.gene015052:CDS |
| ATTCGTACGCACTTCCTAGC+TGG | 0.482898 | 3.2:+85874197 | None:intergenic |
| TGGGACATTGATGAACTTGA+AGG | 0.483005 | 3.2:-85876674 | MS.gene015052:CDS |
| AACAACCCACGCAGGAATCT+CGG | 0.484233 | 3.2:+85874354 | None:intergenic |
| ACAATCTTTGATTAAGGAGG+AGG | 0.486658 | 3.2:-85875786 | MS.gene015052:CDS |
| GTGCTCCACATCTTGAATTG+TGG | 0.487800 | 3.2:-85876298 | MS.gene015052:CDS |
| AGCTAGGAAGTGCGTACGAA+TGG | 0.488925 | 3.2:-85874195 | MS.gene015052:CDS |
| AGAAGCGACGCGGCGTTTGA+CGG | 0.489772 | 3.2:+85876484 | None:intergenic |
| AAAATTAAACCTGTTCCAAA+AGG | 0.496075 | 3.2:-85876095 | MS.gene015052:CDS |
| TTCTACTTCTTGCTATTCCA+AGG | 0.497931 | 3.2:-85873923 | MS.gene015052:CDS |
| CGGTGGTGTTGGTGGTGGTA+GGG | 0.498109 | 3.2:-85876438 | MS.gene015052:CDS |
| ATCAGGGGTAGGCTGAAAAT+CGG | 0.498763 | 3.2:+85875625 | None:intergenic |
| TAAGAAGTCCGGTCGTTCAT+CGG | 0.499552 | 3.2:-85874164 | MS.gene015052:CDS |
| TTTAGTAGTACCTTAAAATG+AGG | 0.500382 | 3.2:+85875584 | None:intergenic |
| TAGGACTTGTGCAAGCTAGA+TGG | 0.503401 | 3.2:-85875369 | MS.gene015052:CDS |
| CCCCATGTGCAATGAGAAAG+AGG | 0.505230 | 3.2:-85876009 | MS.gene015052:intron |
| CACGCAGGAATCTCGGCCTC+CGG | 0.505996 | 3.2:+85874361 | None:intergenic |
| ATTAGAGATGGGTACAAAGC+TGG | 0.509776 | 3.2:-85875713 | MS.gene015052:CDS |
| ATCGACGGTGGTGTTGGTGG+TGG | 0.510363 | 3.2:-85876443 | MS.gene015052:CDS |
| AAAAGTAAATCTTCTTCTGA+AGG | 0.511562 | 3.2:+85876650 | None:intergenic |
| ACATAACAAAATGTATTTGA+AGG | 0.516862 | 3.2:-85874014 | MS.gene015052:CDS |
| GCGGATATCGACGGTGGTGT+TGG | 0.521978 | 3.2:-85876449 | MS.gene015052:CDS |
| TTGAGAAATGACATGACTGC+TGG | 0.523060 | 3.2:+85874322 | None:intergenic |
| ATCACCCTCCGATGAACGAC+CGG | 0.523064 | 3.2:+85874156 | None:intergenic |
| ACGGTGGTGTTGGTGGTGGT+AGG | 0.524657 | 3.2:-85876439 | MS.gene015052:CDS |
| CAGCAGTGTGTAATTTGGAT+TGG | 0.524727 | 3.2:-85875862 | MS.gene015052:CDS |
| GGGATCTGAACAAGAACCAT+AGG | 0.528282 | 3.2:+85876029 | None:intergenic |
| GCAACACCAACTTTCTAAGA+AGG | 0.529828 | 3.2:+85874437 | None:intergenic |
| CCTCTTTCTCATTGCACATG+GGG | 0.530589 | 3.2:+85876009 | None:intergenic |
| CGACACCGTGTGATTAGAGA+TGG | 0.531408 | 3.2:-85875725 | MS.gene015052:CDS |
| ACCTCTTTCTCATTGCACAT+GGG | 0.534788 | 3.2:+85876008 | None:intergenic |
| TTCGAGCTCATCTTCATGGA+TGG | 0.538595 | 3.2:-85875141 | MS.gene015052:CDS |
| CAAAGGCGAAACAATTGCAT+TGG | 0.541740 | 3.2:+85874929 | None:intergenic |
| AGGAGATACGGTACTATGAA+AGG | 0.544564 | 3.2:+85874274 | None:intergenic |
| AAGCTGGTGGTTGGTTGGAG+AGG | 0.544703 | 3.2:-85875192 | MS.gene015052:CDS |
| TACACAATCTTTGATTAAGG+AGG | 0.545280 | 3.2:-85875789 | MS.gene015052:CDS |
| AGGAGTCTACTTTCAGCTCA+AGG | 0.545457 | 3.2:-85873953 | MS.gene015052:CDS |
| GCTAGGAAGTGCGTACGAAT+GGG | 0.547002 | 3.2:-85874194 | MS.gene015052:CDS |
| TACCTCTTTCTCATTGCACA+TGG | 0.547325 | 3.2:+85876007 | None:intergenic |
| GATATCGACGGTGGTGTTGG+TGG | 0.547514 | 3.2:-85876446 | MS.gene015052:CDS |
| ATGGCACCTTTGTTCAATTG+GGG | 0.552161 | 3.2:-85876752 | MS.gene015052:CDS |
| GTTCATAAATGGCAAGAAGA+AGG | 0.553785 | 3.2:-85875764 | MS.gene015052:CDS |
| ATAAAGGCTTTGGAAGAAGC+TGG | 0.554855 | 3.2:-85875208 | MS.gene015052:CDS |
| TGGGTAGTCACTAAGAAGTC+CGG | 0.559717 | 3.2:-85874175 | MS.gene015052:CDS |
| TGATCTGGAAGAAATGAAAG+AGG | 0.560195 | 3.2:-85874083 | MS.gene015052:CDS |
| GGAAGAAGCTGGTGGTTGGT+TGG | 0.560517 | 3.2:-85875197 | MS.gene015052:CDS |
| GTGTTCTCAAATAGGAGATA+CGG | 0.560798 | 3.2:+85874262 | None:intergenic |
| TTCTTAAGGAAATCAGGGGT+AGG | 0.562002 | 3.2:+85875614 | None:intergenic |
| CTTTGGAAGAAGCTGGTGGT+TGG | 0.566030 | 3.2:-85875201 | MS.gene015052:CDS |
| GAAGTCCGGTCGTTCATCGG+AGG | 0.568647 | 3.2:-85874161 | MS.gene015052:CDS |
| GCCTGATGTCATAAAGGCCA+AGG | 0.569837 | 3.2:-85874903 | MS.gene015052:intron |
| ATTAAACCTGTTCCAAAAGG+TGG | 0.570493 | 3.2:-85876092 | MS.gene015052:CDS |
| TCCCATGACAATGTTCGTAC+CGG | 0.571170 | 3.2:-85874380 | MS.gene015052:CDS |
| GGAGTCTACTTTCAGCTCAA+GGG | 0.571457 | 3.2:-85873952 | MS.gene015052:CDS |
| AAAACGCTAAACAACTCACA+TGG | 0.573149 | 3.2:-85876583 | MS.gene015052:CDS |
| CTCCGGTACGAACATTGTCA+TGG | 0.573525 | 3.2:+85874378 | None:intergenic |
| AATTCTTCTTCAAGAGACAA+AGG | 0.578590 | 3.2:-85876614 | MS.gene015052:CDS |
| GGAGGCCGAGATTCCTGCGT+GGG | 0.590482 | 3.2:-85874359 | MS.gene015052:CDS |
| GAAACTAAACCAAACAATGC+AGG | 0.595411 | 3.2:+85876509 | None:intergenic |
| TTTGTGAGAAATTGCAAAGG+AGG | 0.595685 | 3.2:+85876197 | None:intergenic |
| AAGTCCGGTCGTTCATCGGA+GGG | 0.596120 | 3.2:-85874160 | MS.gene015052:CDS |
| TCCGGTACGAACATTGTCAT+GGG | 0.602923 | 3.2:+85874379 | None:intergenic |
| TTCGCACCCCAATTGAACAA+AGG | 0.603697 | 3.2:+85876746 | None:intergenic |
| AGAGGAAATCAGGAGACAAG+AGG | 0.607350 | 3.2:-85874065 | MS.gene015052:CDS |
| ACGGTGTCGGTACAAAATGT+TGG | 0.614765 | 3.2:+85875739 | None:intergenic |
| GGTGCCCACAATTCAAGATG+TGG | 0.618003 | 3.2:+85876293 | None:intergenic |
| CATGACAATGTTCGTACCGG+AGG | 0.621883 | 3.2:-85874377 | MS.gene015052:CDS |
| ATCTCAGGCCTATTCCAGCT+AGG | 0.627956 | 3.2:-85874211 | MS.gene015052:CDS |
| AGCGACGCGGCGTTTGACGG+CGG | 0.631539 | 3.2:+85876487 | None:intergenic |
| AAGATTCAGGTAACTCACAT+TGG | 0.636142 | 3.2:+85874993 | None:intergenic |
| GGATCTGAACAAGAACCATA+GGG | 0.636957 | 3.2:+85876030 | None:intergenic |
| TGAGAAATGACATGACTGCT+GGG | 0.640975 | 3.2:+85874323 | None:intergenic |
| GCAGTACCTCCACATCATTG+AGG | 0.643002 | 3.2:+85875107 | None:intergenic |
| TTATGACATCAGGCAAACAA+AGG | 0.646531 | 3.2:+85874912 | None:intergenic |
| AGAACCGACGCGGATATCGA+CGG | 0.646947 | 3.2:-85876458 | MS.gene015052:CDS |
| AGGATGAGAATCTTCTAACA+AGG | 0.648818 | 3.2:-85875333 | MS.gene015052:CDS |
| CGGTTCTACCAGAAGCGACG+CGG | 0.649354 | 3.2:+85876474 | None:intergenic |
| CCTATTTGAGAACACCATGT+CGG | 0.660812 | 3.2:-85874254 | MS.gene015052:CDS |
| GACACCGTGTGATTAGAGAT+GGG | 0.666771 | 3.2:-85875724 | MS.gene015052:CDS |
| CGCTTCTGGTAGAACCGACG+CGG | 0.667172 | 3.2:-85876468 | MS.gene015052:CDS |
| GCATTTGTGAGAAATTGCAA+AGG | 0.670287 | 3.2:+85876194 | None:intergenic |
| GTTGGAGAGGACCACTGTGG+AGG | 0.676327 | 3.2:-85875179 | MS.gene015052:CDS |
| CATCTCTAATCACACGGTGT+CGG | 0.680410 | 3.2:+85875726 | None:intergenic |
| TGTACCCATCTCTAATCACA+CGG | 0.680975 | 3.2:+85875720 | None:intergenic |
| ACATCCCTAACACCAAATGT+CGG | 0.680982 | 3.2:+85876272 | None:intergenic |
| AAACGCTAAACAACTCACAT+GGG | 0.684108 | 3.2:-85876582 | MS.gene015052:CDS |
| ACCACCGTCGATATCCGCGT+CGG | 0.706571 | 3.2:+85876454 | None:intergenic |
| AAGGCTTTGGAAGAAGCTGG+TGG | 0.707444 | 3.2:-85875205 | MS.gene015052:CDS |
| ATATAACAAACAACCCACGC+AGG | 0.712609 | 3.2:+85874346 | None:intergenic |
| CGGAGGCCGAGATTCCTGCG+TGG | 0.712962 | 3.2:-85874360 | MS.gene015052:CDS |
| AGAAACCAAAGCATCAACGA+GGG | 0.719081 | 3.2:-85874117 | MS.gene015052:CDS |
| GGTGCGAAAGAAAGTCACAA+AGG | 0.727517 | 3.2:-85876731 | MS.gene015052:CDS |
| AAGTCACAAAGGAACACCAG+TGG | 0.729436 | 3.2:-85876720 | MS.gene015052:CDS |
| GAGAAACCAAAGCATCAACG+AGG | 0.730620 | 3.2:-85874118 | MS.gene015052:CDS |
| TTGGTTGGAGAGGACCACTG+TGG | 0.738638 | 3.2:-85875182 | MS.gene015052:CDS |
| ACCGACGCGGATATCGACGG+TGG | 0.749510 | 3.2:-85876455 | MS.gene015052:CDS |
| AATGTCCATATCCTCCACAG+TGG | 0.778249 | 3.2:+85875168 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAATATTTGATTGGATT+TGG | - | chr3.2:85875194-85875213 | MS.gene015052:CDS | 15.0% |
| !!! | AATTGATTGATGATTAATTT+AGG | - | chr3.2:85875060-85875079 | MS.gene015052:intron | 15.0% |
| !!! | TTTTGTTGTTATGTTTTTTA+AGG | - | chr3.2:85874720-85874739 | MS.gene015052:intron | 15.0% |
| !! | AATTACACAATCTTTGATTA+AGG | - | chr3.2:85874831-85874850 | MS.gene015052:intron | 20.0% |
| !! | ACATAACAAAATGTATTTGA+AGG | - | chr3.2:85876609-85876628 | MS.gene015052:CDS | 20.0% |
| !! | AGATAAACAAAACAAACATT+TGG | + | chr3.2:85875566-85875585 | None:intergenic | 20.0% |
| !! | ATCGAAATTACCAAAAAAAA+AGG | - | chr3.2:85875846-85875865 | MS.gene015052:CDS | 20.0% |
| !! | TAATCAAAGATTGTGTAATT+GGG | + | chr3.2:85874831-85874850 | None:intergenic | 20.0% |
| !! | TTAATCAAAGATTGTGTAAT+TGG | + | chr3.2:85874832-85874851 | None:intergenic | 20.0% |
| !!! | AATGTTTGTTTTGTTTATCT+TGG | - | chr3.2:85875566-85875585 | MS.gene015052:intron | 20.0% |
| !!! | GTGTTTTGTTAGTAATTTTA+CGG | + | chr3.2:85875985-85876004 | None:intergenic | 20.0% |
| !!! | TGAATCAAAAAATTGGATTT+TGG | + | chr3.2:85874787-85874806 | None:intergenic | 20.0% |
| !!! | TTTATGTATGCCTTTTTTTT+TGG | + | chr3.2:85875859-85875878 | None:intergenic | 20.0% |
| ! | AAAAATGGAGAATCCAAATT+GGG | - | chr3.2:85873930-85873949 | MS.gene015052:CDS | 25.0% |
| ! | AAAAGTAAATCTTCTTCTGA+AGG | + | chr3.2:85873976-85873995 | None:intergenic | 25.0% |
| ! | AAAATTAAACCTGTTCCAAA+AGG | - | chr3.2:85874528-85874547 | MS.gene015052:intron | 25.0% |
| ! | CAGAACTTGAATCAAAAAAT+TGG | + | chr3.2:85874794-85874813 | None:intergenic | 25.0% |
| ! | TAAAAATGGAGAATCCAAAT+TGG | - | chr3.2:85873929-85873948 | MS.gene015052:CDS | 25.0% |
| ! | TATTCAGAGTATAGATAGAT+TGG | - | chr3.2:85874470-85874489 | MS.gene015052:CDS | 25.0% |
| ! | TGTTTCTTTAATCTAGACTA+CGG | - | chr3.2:85876015-85876034 | MS.gene015052:CDS | 25.0% |
| ! | TTTAGTAGTACCTTAAAATG+AGG | + | chr3.2:85875042-85875061 | None:intergenic | 25.0% |
| !! | AGTGTTTTCCTTAATTTCTT+TGG | - | chr3.2:85875364-85875383 | MS.gene015052:CDS | 25.0% |
| !! | GTGTTTTCCTTAATTTCTTT+GGG | - | chr3.2:85875365-85875384 | MS.gene015052:CDS | 25.0% |
| !!! | CAATTTTTTGATTCAAGTTC+TGG | - | chr3.2:85874792-85874811 | MS.gene015052:intron | 25.0% |
| !!! | TCTCTTGAAGAAGAATTTTT+TGG | + | chr3.2:85874006-85874025 | None:intergenic | 25.0% |
| !!! | TTCTTTGTTTAGGATGTTTT+TGG | - | chr3.2:85874493-85874512 | MS.gene015052:intron | 25.0% |
| !!! | TTGTTGCTTATTTTAAAGGT+TGG | - | chr3.2:85874295-85874314 | MS.gene015052:CDS | 25.0% |
| !!! | TTTTGTTTGAGACATCATTT+TGG | - | chr3.2:85875781-85875800 | MS.gene015052:CDS | 25.0% |
| AAATTCAATGCTATGATCTC+AGG | - | chr3.2:85876397-85876416 | MS.gene015052:intron | 30.0% | |
| AAGAAATGAAAGAGGAAATC+AGG | - | chr3.2:85876548-85876567 | MS.gene015052:CDS | 30.0% | |
| AATAGAGTGAACGAGTAAAA+TGG | + | chr3.2:85876211-85876230 | None:intergenic | 30.0% | |
| AATTCTTCTTCAAGAGACAA+AGG | - | chr3.2:85874009-85874028 | MS.gene015052:CDS | 30.0% | |
| CATTGAACCCAAAGAAATTA+AGG | + | chr3.2:85875375-85875394 | None:intergenic | 30.0% | |
| TACACAATCTTTGATTAAGG+AGG | - | chr3.2:85874834-85874853 | MS.gene015052:intron | 30.0% | |
| TAGGTTCTATACATTCATCA+AGG | - | chr3.2:85874233-85874252 | MS.gene015052:CDS | 30.0% | |
| TATGTGTATCTCAATTCTCA+AGG | - | chr3.2:85875743-85875762 | MS.gene015052:CDS | 30.0% | |
| TGTTACAGTTGTGCTTATTA+TGG | - | chr3.2:85876092-85876111 | MS.gene015052:CDS | 30.0% | |
| TTTCACATAGCTACAATTCA+TGG | + | chr3.2:85874950-85874969 | None:intergenic | 30.0% | |
| ! | AATGAGGAACAGTTTTCTTA+AGG | + | chr3.2:85875026-85875045 | None:intergenic | 30.0% |
| ! | ACAGTTTTCTTAAGGAAATC+AGG | + | chr3.2:85875018-85875037 | None:intergenic | 30.0% |
| ! | ACTATGAAAGGAAAAGCTTT+TGG | + | chr3.2:85876340-85876359 | None:intergenic | 30.0% |
| ! | AGTTTTCTTAAGGAAATCAG+GGG | + | chr3.2:85875016-85875035 | None:intergenic | 30.0% |
| ! | ATTCATTTTCCTCAATGATG+TGG | - | chr3.2:85875507-85875526 | MS.gene015052:intron | 30.0% |
| ! | ATTGAATTTTGTAACCGACA+TGG | + | chr3.2:85876386-85876405 | None:intergenic | 30.0% |
| ! | CAGTTTTCTTAAGGAAATCA+GGG | + | chr3.2:85875017-85875036 | None:intergenic | 30.0% |
| ! | CTTAATTTCTTTGGGTTCAA+TGG | - | chr3.2:85875373-85875392 | MS.gene015052:CDS | 30.0% |
| ! | CTTTTTCCTTCTTAGAAAGT+TGG | - | chr3.2:85876180-85876199 | MS.gene015052:CDS | 30.0% |
| ! | GAAAACTGTTCCTCATTTTA+AGG | - | chr3.2:85875029-85875048 | MS.gene015052:intron | 30.0% |
| ! | GATAGATTGGTTCTTTGTTT+AGG | - | chr3.2:85874483-85874502 | MS.gene015052:intron | 30.0% |
| ! | GTTGTGCTTATTATGGATTA+TGG | - | chr3.2:85876099-85876118 | MS.gene015052:CDS | 30.0% |
| !! | GGTGTTTTTGTTATGTTTTG+AGG | - | chr3.2:85874272-85874291 | MS.gene015052:CDS | 30.0% |
| !!! | GAGGTTGTTGCTTATTTTAA+AGG | - | chr3.2:85874291-85874310 | MS.gene015052:CDS | 30.0% |
| !!! | TGATTGGTTTTATGCTAGAT+GGG | - | chr3.2:85874377-85874396 | MS.gene015052:CDS | 30.0% |
| !!! | TTGATTGGTTTTATGCTAGA+TGG | - | chr3.2:85874376-85874395 | MS.gene015052:CDS | 30.0% |
| AAAACGCTAAACAACTCACA+TGG | - | chr3.2:85874040-85874059 | MS.gene015052:CDS | 35.0% | |
| AAACGCTAAACAACTCACAT+GGG | - | chr3.2:85874041-85874060 | MS.gene015052:CDS | 35.0% | |
| AAATGTGTGAGACGTTGTTA+CGG | - | chr3.2:85875809-85875828 | MS.gene015052:CDS | 35.0% | |
| AACACCAGTGGTTGTAAAAA+TGG | - | chr3.2:85873915-85873934 | MS.gene015052:CDS | 35.0% | |
| AAGATTCAGGTAACTCACAT+TGG | + | chr3.2:85875633-85875652 | None:intergenic | 35.0% | |
| ACAATCTTTGATTAAGGAGG+AGG | - | chr3.2:85874837-85874856 | MS.gene015052:intron | 35.0% | |
| AGATCTTGAATCTGGAGATA+AGG | - | chr3.2:85874563-85874582 | MS.gene015052:intron | 35.0% | |
| AGGATGAGAATCTTCTAACA+AGG | - | chr3.2:85875290-85875309 | MS.gene015052:CDS | 35.0% | |
| AGTTCATCAATGTCCCAATT+TGG | + | chr3.2:85873946-85873965 | None:intergenic | 35.0% | |
| AGTTTGGAGAATAAAGGCTT+TGG | - | chr3.2:85875405-85875424 | MS.gene015052:intron | 35.0% | |
| ATTAAACCTGTTCCAAAAGG+TGG | - | chr3.2:85874531-85874550 | MS.gene015052:intron | 35.0% | |
| CACTGGAAACATTAACAACT+TGG | + | chr3.2:85875610-85875629 | None:intergenic | 35.0% | |
| CCAAAAAGAAAGATACTCCT+TGG | + | chr3.2:85876720-85876739 | None:intergenic | 35.0% | |
| CGTGTAGCTTCAAGAAATTA+TGG | - | chr3.2:85875134-85875153 | MS.gene015052:CDS | 35.0% | |
| CTACAGGATAATGACGAATT+AGG | - | chr3.2:85875235-85875254 | MS.gene015052:CDS | 35.0% | |
| CTTTCTTGCAGATAAGCATA+TGG | - | chr3.2:85876134-85876153 | MS.gene015052:CDS | 35.0% | |
| GAAACTAAACCAAACAATGC+AGG | + | chr3.2:85874117-85874136 | None:intergenic | 35.0% | |
| GAATTGAGATACACATACCT+TGG | + | chr3.2:85875740-85875759 | None:intergenic | 35.0% | |
| GATCTTGAATCTGGAGATAA+GGG | - | chr3.2:85874564-85874583 | MS.gene015052:intron | 35.0% | |
| GATGTTTCAGATCTTGAATC+TGG | - | chr3.2:85874555-85874574 | MS.gene015052:intron | 35.0% | |
| GCATTTGTGAGAAATTGCAA+AGG | + | chr3.2:85874432-85874451 | None:intergenic | 35.0% | |
| GTAGCTTCAAGAAATTATGG+TGG | - | chr3.2:85875137-85875156 | MS.gene015052:CDS | 35.0% | |
| GTGTTCTCAAATAGGAGATA+CGG | + | chr3.2:85876364-85876383 | None:intergenic | 35.0% | |
| GTTCATAAATGGCAAGAAGA+AGG | - | chr3.2:85874859-85874878 | MS.gene015052:intron | 35.0% | |
| TATTGCAGCAGTGTGTAATT+TGG | - | chr3.2:85874756-85874775 | MS.gene015052:intron | 35.0% | |
| TCTTCAAGAGACAAAGGAAA+AGG | - | chr3.2:85874015-85874034 | MS.gene015052:CDS | 35.0% | |
| TCTTTCATTTCTTCCAGATC+AGG | + | chr3.2:85876541-85876560 | None:intergenic | 35.0% | |
| TGATCTGGAAGAAATGAAAG+AGG | - | chr3.2:85876540-85876559 | MS.gene015052:CDS | 35.0% | |
| TGGTAATTTCGATGCATTCA+GGG | + | chr3.2:85875839-85875858 | None:intergenic | 35.0% | |
| TTAAGGAGGAGGTTCATAAA+TGG | - | chr3.2:85874848-85874867 | MS.gene015052:intron | 35.0% | |
| TTATGACATCAGGCAAACAA+AGG | + | chr3.2:85875714-85875733 | None:intergenic | 35.0% | |
| TTGTTTGCCTGATGTCATAA+AGG | - | chr3.2:85875714-85875733 | MS.gene015052:CDS | 35.0% | |
| TTTGTGAGAAATTGCAAAGG+AGG | + | chr3.2:85874429-85874448 | None:intergenic | 35.0% | |
| ! | AATTCTCAAGGCTCTTTTCA+TGG | - | chr3.2:85875755-85875774 | MS.gene015052:CDS | 35.0% |
| ! | CAAGGTGTTTCTATGTTTGT+CGG | - | chr3.2:85874251-85874270 | MS.gene015052:CDS | 35.0% |
| ! | GGTGGATGTGTCATATATTT+TGG | - | chr3.2:85875155-85875174 | MS.gene015052:CDS | 35.0% |
| ! | GTATTTGAAGGAACTTGCTT+TGG | - | chr3.2:85876621-85876640 | MS.gene015052:CDS | 35.0% |
| ! | TACTTTTAACAGCTTCAGCA+AGG | - | chr3.2:85876650-85876669 | MS.gene015052:CDS | 35.0% |
| ! | TAGATGGTCTTTTGTGAACA+AGG | - | chr3.2:85875270-85875289 | MS.gene015052:CDS | 35.0% |
| ! | TTGGTAATTTCGATGCATTC+AGG | + | chr3.2:85875840-85875859 | None:intergenic | 35.0% |
| !! | AGAACCTACTTTTCACTGTA+GGG | + | chr3.2:85874221-85874240 | None:intergenic | 35.0% |
| !! | CTTGTTGTTCCACTTCAAAA+TGG | + | chr3.2:85875339-85875358 | None:intergenic | 35.0% |
| !! | GGAGTATCTTTCTTTTTGGT+TGG | - | chr3.2:85876721-85876740 | MS.gene015052:CDS | 35.0% |
| !! | GTGTTAGGGATGTTTTTGAT+TGG | - | chr3.2:85874361-85874380 | MS.gene015052:CDS | 35.0% |
| !! | TAGAACCTACTTTTCACTGT+AGG | + | chr3.2:85874222-85874241 | None:intergenic | 35.0% |
| !! | TCTGTGTTTCCATTTTGAAG+TGG | - | chr3.2:85875327-85875346 | MS.gene015052:CDS | 35.0% |
| !! | TTCTACTTCTTGCTATTCCA+AGG | - | chr3.2:85876700-85876719 | MS.gene015052:CDS | 35.0% |
| !! | TTCTCCATTTTTACAACCAC+TGG | + | chr3.2:85873922-85873941 | None:intergenic | 35.0% |
| !! | TTGGTTGGTCTAGACTTAAT+TGG | - | chr3.2:85876736-85876755 | MS.gene015052:CDS | 35.0% |
| !!! | CCAAGGAGTATCTTTCTTTT+TGG | - | chr3.2:85876717-85876736 | MS.gene015052:CDS | 35.0% |
| !!! | GTTAGTTTGTCACGTTGTTT+TGG | - | chr3.2:85875889-85875908 | MS.gene015052:intron | 35.0% |
| ACAACGTGACAAACTAACGA+AGG | + | chr3.2:85875887-85875906 | None:intergenic | 40.0% | |
| ACAGAAAACAGCAGCATAGA+TGG | - | chr3.2:85875662-85875681 | MS.gene015052:CDS | 40.0% | |
| ACATCCCTAACACCAAATGT+CGG | + | chr3.2:85874354-85874373 | None:intergenic | 40.0% | |
| ACCTCTTTCTCATTGCACAT+GGG | + | chr3.2:85874618-85874637 | None:intergenic | 40.0% | |
| AGAACCCTACAGTGAAAAGT+AGG | - | chr3.2:85874214-85874233 | MS.gene015052:CDS | 40.0% | |
| AGATAAGGGTTTCTTCCCTA+TGG | - | chr3.2:85874578-85874597 | MS.gene015052:intron | 40.0% | |
| AGGAGATACGGTACTATGAA+AGG | + | chr3.2:85876352-85876371 | None:intergenic | 40.0% | |
| ATATAACAAACAACCCACGC+AGG | + | chr3.2:85876280-85876299 | None:intergenic | 40.0% | |
| ATGGCACCTTTGTTCAATTG+GGG | - | chr3.2:85873871-85873890 | MS.gene015052:CDS | 40.0% | |
| ATTAGAGATGGGTACAAAGC+TGG | - | chr3.2:85874910-85874929 | MS.gene015052:CDS | 40.0% | |
| CAAAGGCGAAACAATTGCAT+TGG | + | chr3.2:85875697-85875716 | None:intergenic | 40.0% | |
| CAAATTGCTCCTGCATTGTT+TGG | - | chr3.2:85874105-85874124 | MS.gene015052:CDS | 40.0% | |
| CAGCAGTGTGTAATTTGGAT+TGG | - | chr3.2:85874761-85874780 | MS.gene015052:intron | 40.0% | |
| CCTATTTGAGAACACCATGT+CGG | - | chr3.2:85876369-85876388 | MS.gene015052:intron | 40.0% | |
| CTGTAAGCTTCGTAAGATTC+AGG | + | chr3.2:85875646-85875665 | None:intergenic | 40.0% | |
| GGATCTGAACAAGAACCATA+GGG | + | chr3.2:85874596-85874615 | None:intergenic | 40.0% | |
| TACCTCTTTCTCATTGCACA+TGG | + | chr3.2:85874619-85874638 | None:intergenic | 40.0% | |
| TGAGAAATGACATGACTGCT+GGG | + | chr3.2:85876303-85876322 | None:intergenic | 40.0% | |
| TGATTGGATTTGGATCCACT+TGG | - | chr3.2:85875204-85875223 | MS.gene015052:CDS | 40.0% | |
| TGCTCCACATCTTGAATTGT+GGG | - | chr3.2:85874326-85874345 | MS.gene015052:CDS | 40.0% | |
| TGCTGGAGTTTGGAGAATAA+AGG | - | chr3.2:85875399-85875418 | MS.gene015052:intron | 40.0% | |
| TGGGACATTGATGAACTTGA+AGG | - | chr3.2:85873949-85873968 | MS.gene015052:CDS | 40.0% | |
| TGTACCCATCTCTAATCACA+CGG | + | chr3.2:85874906-85874925 | None:intergenic | 40.0% | |
| TTCTTAAGGAAATCAGGGGT+AGG | + | chr3.2:85875012-85875031 | None:intergenic | 40.0% | |
| TTGAGAAATGACATGACTGC+TGG | + | chr3.2:85876304-85876323 | None:intergenic | 40.0% | |
| ! | AGAAACCAAAGCATCAACGA+GGG | - | chr3.2:85876506-85876525 | MS.gene015052:CDS | 40.0% |
| ! | CATTTTCCTCAATGATGTGG+AGG | - | chr3.2:85875510-85875529 | MS.gene015052:intron | 40.0% |
| ! | GCAACACCAACTTTCTAAGA+AGG | + | chr3.2:85876189-85876208 | None:intergenic | 40.0% |
| !! | ATAAAGGCTTTGGAAGAAGC+TGG | - | chr3.2:85875415-85875434 | MS.gene015052:intron | 40.0% |
| !! | TCTGAAACATCACCACCTTT+TGG | + | chr3.2:85874546-85874565 | None:intergenic | 40.0% |
| !!! | AAAGGAAAAGCTTTTGGAGC+TGG | + | chr3.2:85876334-85876353 | None:intergenic | 40.0% |
| AAGTCACAAAGGAACACCAG+TGG | - | chr3.2:85873903-85873922 | MS.gene015052:CDS | 45.0% | |
| AATGTCCATATCCTCCACAG+TGG | + | chr3.2:85875458-85875477 | None:intergenic | 45.0% | |
| AGAGGAAATCAGGAGACAAG+AGG | - | chr3.2:85876558-85876577 | MS.gene015052:CDS | 45.0% | |
| AGGAGTCTACTTTCAGCTCA+AGG | - | chr3.2:85876670-85876689 | MS.gene015052:CDS | 45.0% | |
| ATCAGGGGTAGGCTGAAAAT+CGG | + | chr3.2:85875001-85875020 | None:intergenic | 45.0% | |
| CAGCAGCTCTATGAGCTTTA+AGG | + | chr3.2:85874074-85874093 | None:intergenic | 45.0% | |
| CATCTCTAATCACACGGTGT+CGG | + | chr3.2:85874900-85874919 | None:intergenic | 45.0% | |
| CCGACATGGTGTTCTCAAAT+AGG | + | chr3.2:85876372-85876391 | None:intergenic | 45.0% | |
| CCTCTTTCTCATTGCACATG+GGG | + | chr3.2:85874617-85874636 | None:intergenic | 45.0% | |
| CTTAAAGCTCATAGAGCTGC+TGG | - | chr3.2:85874072-85874091 | MS.gene015052:CDS | 45.0% | |
| GACACCGTGTGATTAGAGAT+GGG | - | chr3.2:85874899-85874918 | MS.gene015052:intron | 45.0% | |
| GGAGTCTACTTTCAGCTCAA+GGG | - | chr3.2:85876671-85876690 | MS.gene015052:CDS | 45.0% | |
| GGGATCTGAACAAGAACCAT+AGG | + | chr3.2:85874597-85874616 | None:intergenic | 45.0% | |
| GGTGCGAAAGAAAGTCACAA+AGG | - | chr3.2:85873892-85873911 | MS.gene015052:CDS | 45.0% | |
| GTGCTCCACATCTTGAATTG+TGG | - | chr3.2:85874325-85874344 | MS.gene015052:CDS | 45.0% | |
| TAAGAAGTCCGGTCGTTCAT+CGG | - | chr3.2:85876459-85876478 | MS.gene015052:CDS | 45.0% | |
| TAGGACTTGTGCAAGCTAGA+TGG | - | chr3.2:85875254-85875273 | MS.gene015052:CDS | 45.0% | |
| TCAATGGTACTGCTGGAGTT+TGG | - | chr3.2:85875389-85875408 | MS.gene015052:intron | 45.0% | |
| TCCCATGACAATGTTCGTAC+CGG | - | chr3.2:85876243-85876262 | MS.gene015052:CDS | 45.0% | |
| TCCGGTACGAACATTGTCAT+GGG | + | chr3.2:85876247-85876266 | None:intergenic | 45.0% | |
| TGGGTAGTCACTAAGAAGTC+CGG | - | chr3.2:85876448-85876467 | MS.gene015052:CDS | 45.0% | |
| TTCGAGCTCATCTTCATGGA+TGG | - | chr3.2:85875482-85875501 | MS.gene015052:intron | 45.0% | |
| TTCGCACCCCAATTGAACAA+AGG | + | chr3.2:85873880-85873899 | None:intergenic | 45.0% | |
| ! | ACCTTGGCCTTTATGACATC+AGG | + | chr3.2:85875724-85875743 | None:intergenic | 45.0% |
| ! | GAGAAACCAAAGCATCAACG+AGG | - | chr3.2:85876505-85876524 | MS.gene015052:CDS | 45.0% |
| ! | TTTGGGTTCAATGGTACTGC+TGG | - | chr3.2:85875382-85875401 | MS.gene015052:CDS | 45.0% |
| !! | ACGGTGTCGGTACAAAATGT+TGG | + | chr3.2:85874887-85874906 | None:intergenic | 45.0% |
| !!! | ACATCACCACCTTTTGGAAC+AGG | + | chr3.2:85874540-85874559 | None:intergenic | 45.0% |
| !! | ATAATTAATTAATATTTGAT+TGG | - | chr3.2:85875188-85875207 | MS.gene015052:CDS | 5.0% |
| AACAACCCACGCAGGAATCT+CGG | + | chr3.2:85876272-85876291 | None:intergenic | 50.0% | |
| ACGCACTTCCTAGCTGGAAT+AGG | + | chr3.2:85876423-85876442 | None:intergenic | 50.0% | |
| ATCTCAGGCCTATTCCAGCT+AGG | - | chr3.2:85876412-85876431 | MS.gene015052:intron | 50.0% | |
| ATTCGTACGCACTTCCTAGC+TGG | + | chr3.2:85876429-85876448 | None:intergenic | 50.0% | |
| CAGCAGCATAGATGGCATTC+TGG | - | chr3.2:85875670-85875689 | MS.gene015052:CDS | 50.0% | |
| CAGGTAACTCACATTGGCAC+TGG | + | chr3.2:85875627-85875646 | None:intergenic | 50.0% | |
| CATGACAATGTTCGTACCGG+AGG | - | chr3.2:85876246-85876265 | MS.gene015052:CDS | 50.0% | |
| CCCCATGTGCAATGAGAAAG+AGG | - | chr3.2:85874614-85874633 | MS.gene015052:intron | 50.0% | |
| CCTGTAGCATCATCACCAAG+TGG | + | chr3.2:85875222-85875241 | None:intergenic | 50.0% | |
| CGACACCGTGTGATTAGAGA+TGG | - | chr3.2:85874898-85874917 | MS.gene015052:intron | 50.0% | |
| CTCCGGTACGAACATTGTCA+TGG | + | chr3.2:85876248-85876267 | None:intergenic | 50.0% | |
| GATGACCCTCGTTGATGCTT+TGG | + | chr3.2:85876514-85876533 | None:intergenic | 50.0% | |
| GCAGTACCTCCACATCATTG+AGG | + | chr3.2:85875519-85875538 | None:intergenic | 50.0% | |
| GCCTGATGTCATAAAGGCCA+AGG | - | chr3.2:85875720-85875739 | MS.gene015052:CDS | 50.0% | |
| GCTGTTCGAGCTCATCTTCA+TGG | - | chr3.2:85875478-85875497 | MS.gene015052:intron | 50.0% | |
| GGTGCCCACAATTCAAGATG+TGG | + | chr3.2:85874333-85874352 | None:intergenic | 50.0% | |
| ! | AGCTAGGAAGTGCGTACGAA+TGG | - | chr3.2:85876428-85876447 | MS.gene015052:CDS | 50.0% |
| ! | CTTTGGAAGAAGCTGGTGGT+TGG | - | chr3.2:85875422-85875441 | MS.gene015052:intron | 50.0% |
| ! | GCTAGGAAGTGCGTACGAAT+GGG | - | chr3.2:85876429-85876448 | MS.gene015052:CDS | 50.0% |
| !! | AAGGCTTTGGAAGAAGCTGG+TGG | - | chr3.2:85875418-85875437 | MS.gene015052:intron | 50.0% |
| !! | CCACTTGGTGATGATGCTAC+AGG | - | chr3.2:85875219-85875238 | MS.gene015052:CDS | 50.0% |
| !! | GAATTGTGGGCACCGACATT+TGG | - | chr3.2:85874339-85874358 | MS.gene015052:CDS | 50.0% |
| !! | GGCACCGACATTTGGTGTTA+GGG | - | chr3.2:85874347-85874366 | MS.gene015052:CDS | 50.0% |
| AAGTCCGGTCGTTCATCGGA+GGG | - | chr3.2:85876463-85876482 | MS.gene015052:CDS | 55.0% | |
| AGAACCGACGCGGATATCGA+CGG | - | chr3.2:85874165-85874184 | MS.gene015052:CDS | 55.0% | |
| AGGGTCATCAGCACCTGATC+TGG | - | chr3.2:85876525-85876544 | MS.gene015052:CDS | 55.0% | |
| ATCACCCTCCGATGAACGAC+CGG | + | chr3.2:85876470-85876489 | None:intergenic | 55.0% | |
| GAGGACCACTGTGGAGGATA+TGG | - | chr3.2:85875450-85875469 | MS.gene015052:intron | 55.0% | |
| GGAAGAAGCTGGTGGTTGGT+TGG | - | chr3.2:85875426-85875445 | MS.gene015052:intron | 55.0% | |
| TTGGTTGGAGAGGACCACTG+TGG | - | chr3.2:85875441-85875460 | MS.gene015052:intron | 55.0% | |
| ! | AAGCTGGTGGTTGGTTGGAG+AGG | - | chr3.2:85875431-85875450 | MS.gene015052:intron | 55.0% |
| ! | GATATCGACGGTGGTGTTGG+TGG | - | chr3.2:85874177-85874196 | MS.gene015052:CDS | 55.0% |
| !! | GGGCACCGACATTTGGTGTT+AGG | - | chr3.2:85874346-85874365 | MS.gene015052:CDS | 55.0% |
| ACCACCGTCGATATCCGCGT+CGG | + | chr3.2:85874172-85874191 | None:intergenic | 60.0% | |
| AGAAGCGACGCGGCGTTTGA+CGG | + | chr3.2:85874142-85874161 | None:intergenic | 60.0% | |
| CGCTTCTGGTAGAACCGACG+CGG | - | chr3.2:85874155-85874174 | MS.gene015052:CDS | 60.0% | |
| CGGTTCTACCAGAAGCGACG+CGG | + | chr3.2:85874152-85874171 | None:intergenic | 60.0% | |
| GAAGTCCGGTCGTTCATCGG+AGG | - | chr3.2:85876462-85876481 | MS.gene015052:CDS | 60.0% | |
| GCGGATATCGACGGTGGTGT+TGG | - | chr3.2:85874174-85874193 | MS.gene015052:CDS | 60.0% | |
| GTTGGAGAGGACCACTGTGG+AGG | - | chr3.2:85875444-85875463 | MS.gene015052:intron | 60.0% | |
| !! | ACGGTGGTGTTGGTGGTGGT+AGG | - | chr3.2:85874184-85874203 | MS.gene015052:CDS | 60.0% |
| !! | ATCGACGGTGGTGTTGGTGG+TGG | - | chr3.2:85874180-85874199 | MS.gene015052:CDS | 60.0% |
| !! | CGGTGGTGTTGGTGGTGGTA+GGG | - | chr3.2:85874185-85874204 | MS.gene015052:CDS | 60.0% |
| ACCGACGCGGATATCGACGG+TGG | - | chr3.2:85874168-85874187 | MS.gene015052:CDS | 65.0% | |
| CACGCAGGAATCTCGGCCTC+CGG | + | chr3.2:85876265-85876284 | None:intergenic | 65.0% | |
| GGAGGCCGAGATTCCTGCGT+GGG | - | chr3.2:85876264-85876283 | MS.gene015052:CDS | 65.0% | |
| GTCAAACGCCGCGTCGCTTC+TGG | - | chr3.2:85874141-85874160 | MS.gene015052:CDS | 65.0% | |
| AGCGACGCGGCGTTTGACGG+CGG | + | chr3.2:85874139-85874158 | None:intergenic | 70.0% | |
| CGGAGGCCGAGATTCCTGCG+TGG | - | chr3.2:85876263-85876282 | MS.gene015052:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 85873871 | 85876774 | 85873871 | ID=MS.gene015052 |
| chr3.2 | mRNA | 85873871 | 85876774 | 85873871 | ID=MS.gene015052.t1;Parent=MS.gene015052 |
| chr3.2 | exon | 85876414 | 85876774 | 85876414 | ID=MS.gene015052.t1.exon1;Parent=MS.gene015052.t1 |
| chr3.2 | CDS | 85876414 | 85876774 | 85876414 | ID=cds.MS.gene015052.t1;Parent=MS.gene015052.t1 |
| chr3.2 | exon | 85876010 | 85876332 | 85876010 | ID=MS.gene015052.t1.exon2;Parent=MS.gene015052.t1 |
| chr3.2 | CDS | 85876010 | 85876332 | 85876010 | ID=cds.MS.gene015052.t1;Parent=MS.gene015052.t1 |
| chr3.2 | exon | 85875595 | 85875903 | 85875595 | ID=MS.gene015052.t1.exon3;Parent=MS.gene015052.t1 |
| chr3.2 | CDS | 85875595 | 85875903 | 85875595 | ID=cds.MS.gene015052.t1;Parent=MS.gene015052.t1 |
| chr3.2 | exon | 85875114 | 85875404 | 85875114 | ID=MS.gene015052.t1.exon4;Parent=MS.gene015052.t1 |
| chr3.2 | CDS | 85875114 | 85875404 | 85875114 | ID=cds.MS.gene015052.t1;Parent=MS.gene015052.t1 |
| chr3.2 | exon | 85874904 | 85875017 | 85874904 | ID=MS.gene015052.t1.exon5;Parent=MS.gene015052.t1 |
| chr3.2 | CDS | 85874904 | 85875017 | 85874904 | ID=cds.MS.gene015052.t1;Parent=MS.gene015052.t1 |
| chr3.2 | exon | 85873871 | 85874500 | 85873871 | ID=MS.gene015052.t1.exon6;Parent=MS.gene015052.t1 |
| chr3.2 | CDS | 85873871 | 85874500 | 85873871 | ID=cds.MS.gene015052.t1;Parent=MS.gene015052.t1 |
| Gene Sequence |
| Protein sequence |
