Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015242.t1 | XP_003611609.2 | 96 | 403 | 16 | 0 | 1 | 403 | 1 | 403 | 4.40E-229 | 803.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015242.t1 | O64815 | 68.5 | 413 | 112 | 4 | 6 | 402 | 2 | 412 | 2.6e-161 | 569.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015242.t1 | G7K3U7 | 96.0 | 403 | 16 | 0 | 1 | 403 | 1 | 403 | 3.2e-229 | 803.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene015242.t1 | TR | GNAT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene015242 | MS.gene09583 | PPI |
| MS.gene015242 | MS.gene43555 | PPI |
| MS.gene015242 | MS.gene44473 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015242.t1 | MTR_5g015810 | 96.030 | 403 | 16 | 0 | 1 | 403 | 1 | 403 | 0.0 | 801 |
| MS.gene015242.t1 | MTR_5g015810 | 96.084 | 332 | 13 | 0 | 72 | 403 | 1 | 332 | 0.0 | 664 |
| MS.gene015242.t1 | MTR_4g095700 | 71.149 | 409 | 108 | 4 | 5 | 403 | 3 | 411 | 0.0 | 604 |
| MS.gene015242.t1 | MTR_5g015810 | 96.503 | 286 | 10 | 0 | 118 | 403 | 1 | 286 | 0.0 | 574 |
| MS.gene015242.t1 | MTR_4g007130 | 47.816 | 412 | 186 | 8 | 2 | 403 | 17 | 409 | 2.36e-126 | 370 |
| MS.gene015242.t1 | MTR_3g465010 | 47.236 | 398 | 188 | 6 | 11 | 403 | 8 | 388 | 3.56e-119 | 352 |
| MS.gene015242.t1 | MTR_4g122030 | 33.907 | 407 | 188 | 14 | 9 | 402 | 11 | 349 | 9.00e-54 | 182 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015242.t1 | AT2G23060 | 68.357 | 414 | 113 | 4 | 6 | 403 | 2 | 413 | 0.0 | 566 |
| MS.gene015242.t1 | AT4G37580 | 67.581 | 401 | 123 | 3 | 10 | 403 | 3 | 403 | 0.0 | 544 |
| MS.gene015242.t1 | AT5G67430 | 60.506 | 395 | 140 | 6 | 9 | 403 | 8 | 386 | 4.53e-169 | 478 |
| MS.gene015242.t1 | AT4G37580 | 68.035 | 341 | 105 | 2 | 67 | 403 | 6 | 346 | 2.24e-165 | 468 |
| MS.gene015242.t1 | AT5G67430 | 61.747 | 332 | 116 | 5 | 72 | 403 | 1 | 321 | 1.46e-143 | 411 |
| MS.gene015242.t1 | AT2G23060 | 70.251 | 279 | 80 | 1 | 128 | 403 | 1 | 279 | 1.51e-143 | 409 |
| MS.gene015242.t1 | AT2G30090 | 41.791 | 402 | 195 | 7 | 11 | 403 | 15 | 386 | 2.32e-95 | 291 |
Find 98 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTAAAACGACACGTATTT+TGG | 0.139903 | 5.4:-9346109 | MS.gene015242:CDS |
| TTAACCATCTTCACCTTCTT+TGG | 0.150962 | 5.4:+9345994 | None:intergenic |
| TATCTTGTGCTAATGATTTA+TGG | 0.162688 | 5.4:-9345858 | MS.gene015242:CDS |
| CCGGATTTGTTTAGGCCTTT+TGG | 0.177590 | 5.4:-9346051 | MS.gene015242:CDS |
| TGGCCCAGATAGGTTTCTTT+TGG | 0.229875 | 5.4:-9346226 | MS.gene015242:CDS |
| TTGTGGGTTTGCGCATAATT+TGG | 0.260941 | 5.4:-9345965 | MS.gene015242:CDS |
| TGCTTGGTGACCCCATTTGC+AGG | 0.320702 | 5.4:-9347110 | MS.gene015242:CDS |
| TAACCATCTTCACCTTCTTT+GGG | 0.322009 | 5.4:+9345995 | None:intergenic |
| GCCTAAAATGTAAGCGAGTT+TGG | 0.325207 | 5.4:+9346775 | None:intergenic |
| AGAACAGCGTCAATGTCATT+AGG | 0.331188 | 5.4:+9346318 | None:intergenic |
| GTTGAAGGTACCGTCGGTTC+CGG | 0.335039 | 5.4:-9346070 | MS.gene015242:CDS |
| CTTAATAACAAACTTAATCT+AGG | 0.336122 | 5.4:-9346297 | MS.gene015242:CDS |
| TAAGCGAGTTTGGTGTAAAC+TGG | 0.336993 | 5.4:+9346785 | None:intergenic |
| GGAATGTGGGTGTGGGGTTG+TGG | 0.340015 | 5.4:-9345938 | MS.gene015242:CDS |
| TGGCTATGGAATGTGGGTGT+GGG | 0.346396 | 5.4:-9345945 | MS.gene015242:CDS |
| TTGGCTATGGAATGTGGGTG+TGG | 0.357803 | 5.4:-9345946 | MS.gene015242:CDS |
| CGTCGGTTCCGGATTTGTTT+AGG | 0.361537 | 5.4:-9346059 | MS.gene015242:CDS |
| CGGCGCTGAATATTCATATA+TGG | 0.362736 | 5.4:-9346541 | MS.gene015242:CDS |
| TTGGTAGCGTACCGTTGATT+AGG | 0.367983 | 5.4:+9346740 | None:intergenic |
| CGGTCCAAAAGAAACCTATC+TGG | 0.369755 | 5.4:+9346222 | None:intergenic |
| ATGATTTATGGTGTATTAAG+AGG | 0.386924 | 5.4:-9345846 | MS.gene015242:CDS |
| TTTGTTCTGTGAGCATAAAC+GGG | 0.400112 | 5.4:+9346429 | None:intergenic |
| TGAGGTTTGGTATACCTCAT+TGG | 0.402328 | 5.4:-9345888 | MS.gene015242:CDS |
| TTTGGACCGACCTTGTTCTT+GGG | 0.404166 | 5.4:-9346208 | MS.gene015242:CDS |
| TGGTGCAGGAGAATGGGAAT+AGG | 0.414994 | 5.4:-9346606 | MS.gene015242:intron |
| GAACAGCGTCAATGTCATTA+GGG | 0.415763 | 5.4:+9346319 | None:intergenic |
| TGAGTGGCGGACCCTGCAAA+TGG | 0.420570 | 5.4:+9347098 | None:intergenic |
| CCGGGCTTTGCCATGGTTGA+AGG | 0.426010 | 5.4:-9346085 | MS.gene015242:CDS |
| GGCGCGTCGCGTGTCAAGCG+CGG | 0.428563 | 5.4:-9346135 | MS.gene015242:CDS |
| AAGATGGTTAAGGCCCTTTG+TGG | 0.430907 | 5.4:-9345982 | MS.gene015242:CDS |
| GCGCGTCGCGTGTCAAGCGC+GGG | 0.431919 | 5.4:-9346134 | MS.gene015242:CDS |
| GAGTGGCGGACCCTGCAAAT+GGG | 0.439578 | 5.4:+9347099 | None:intergenic |
| CTCACCTTCTTTCCTCATGC+TGG | 0.441437 | 5.4:-9347079 | MS.gene015242:intron |
| GTGATGGTTCTGTTGGTGAT+TGG | 0.447246 | 5.4:-9345807 | MS.gene015242:CDS |
| GGCTATGGAATGTGGGTGTG+GGG | 0.449265 | 5.4:-9345944 | MS.gene015242:CDS |
| GAAATAGTTGGAATGATAAG+AGG | 0.455218 | 5.4:-9346875 | MS.gene015242:CDS |
| GGTGCAGGAGAATGGGAATA+GGG | 0.455976 | 5.4:-9346605 | MS.gene015242:intron |
| GAAATTGATAAAGAAATAGT+TGG | 0.468243 | 5.4:-9346887 | MS.gene015242:CDS |
| TGACGAGAATTGACGGTGTA+CGG | 0.468550 | 5.4:+9346454 | None:intergenic |
| TCATGTGAACCATTGAGGTT+TGG | 0.476876 | 5.4:-9345901 | MS.gene015242:CDS |
| TCTCTCTTCACCGACATGCT+TGG | 0.485318 | 5.4:-9347126 | MS.gene015242:CDS |
| TACAGTGTCAAAACATGGCC+TGG | 0.491753 | 5.4:-9346246 | MS.gene015242:CDS |
| AGATGGTTAAGGCCCTTTGT+GGG | 0.493646 | 5.4:-9345981 | MS.gene015242:CDS |
| CATAATTTGGCTATGGAATG+TGG | 0.501628 | 5.4:-9345952 | MS.gene015242:CDS |
| AAGTGTTTGGAATTCTAAAG+AGG | 0.505817 | 5.4:-9346178 | MS.gene015242:CDS |
| CTTGTTGATGATTATAGTGA+TGG | 0.506465 | 5.4:-9345823 | MS.gene015242:CDS |
| GATTGGACCAAGTCTATGCC+AGG | 0.509333 | 5.4:-9345790 | MS.gene015242:CDS |
| CCAAAAGGCCTAAACAAATC+CGG | 0.512387 | 5.4:+9346051 | None:intergenic |
| AAAGAAGGTGAAGATGGTTA+AGG | 0.518056 | 5.4:-9345992 | MS.gene015242:CDS |
| ACAACTTCTTAAATCTCTCT+AGG | 0.519282 | 5.4:+9345748 | None:intergenic |
| TTGCTTCATGTGAACCATTG+AGG | 0.519399 | 5.4:-9345906 | MS.gene015242:CDS |
| GATTATAGTGATGGTTCTGT+TGG | 0.524315 | 5.4:-9345814 | MS.gene015242:CDS |
| ACGGCGTCAGAAGGAGTTAA+CGG | 0.524819 | 5.4:+9346381 | None:intergenic |
| ACCGACGGTACCTTCAACCA+TGG | 0.527761 | 5.4:+9346075 | None:intergenic |
| TATACCAGCATGAGGAAAGA+AGG | 0.530072 | 5.4:+9347075 | None:intergenic |
| AAACATGGCCTGGCCCAGAT+AGG | 0.535009 | 5.4:-9346236 | MS.gene015242:CDS |
| TAGAATATAACGGCGTCAGA+AGG | 0.539306 | 5.4:+9346372 | None:intergenic |
| AAAAGAAACCTATCTGGGCC+AGG | 0.540432 | 5.4:+9346228 | None:intergenic |
| GTTTGCGCATAATTTGGCTA+TGG | 0.547310 | 5.4:-9345959 | MS.gene015242:CDS |
| GCTTGGTGACCCCATTTGCA+GGG | 0.548286 | 5.4:-9347109 | MS.gene015242:CDS |
| GTTGAAAGGACATGTGAAGT+TGG | 0.549405 | 5.4:-9347165 | MS.gene015242:CDS |
| AATTATGCGCAAACCCACAA+AGG | 0.552012 | 5.4:+9345968 | None:intergenic |
| AAGAGAGAAAGTTGGTCACT+AGG | 0.553217 | 5.4:+9347141 | None:intergenic |
| CCTTCAACCATGGCAAAGCC+CGG | 0.555112 | 5.4:+9346085 | None:intergenic |
| AAAGAGTAGAAGCAGTTGAA+AGG | 0.557149 | 5.4:-9347179 | MS.gene015242:CDS |
| AGAAGGAGTTAACGGAATGA+TGG | 0.559153 | 5.4:+9346389 | None:intergenic |
| GGAGATCCCTGGCATAGACT+TGG | 0.559706 | 5.4:+9345783 | None:intergenic |
| GAGGCATGGTTTAAATATAA+CGG | 0.561249 | 5.4:-9346561 | MS.gene015242:CDS |
| TGAGGTATACCAAACCTCAA+TGG | 0.563011 | 5.4:+9345892 | None:intergenic |
| ACGGGGTTGACGAGAATTGA+CGG | 0.566648 | 5.4:+9346447 | None:intergenic |
| AAAACTCTACGGTAGAGAAA+CGG | 0.566914 | 5.4:+9346343 | None:intergenic |
| GTGTGGGGTTGTGGCTACTG+AGG | 0.570076 | 5.4:-9345929 | MS.gene015242:CDS |
| ATTATGCGCAAACCCACAAA+GGG | 0.571069 | 5.4:+9345969 | None:intergenic |
| ACTGTAGGACCCACTTGGTA+CGG | 0.571473 | 5.4:+9346263 | None:intergenic |
| TTGACACTGTAGGACCCACT+TGG | 0.573131 | 5.4:+9346258 | None:intergenic |
| AGTGGCGGACCCTGCAAATG+GGG | 0.573181 | 5.4:+9347100 | None:intergenic |
| TGAATATTCATATATGGCAA+CGG | 0.574189 | 5.4:-9346535 | MS.gene015242:CDS |
| GCCATGGTTGAAGGTACCGT+CGG | 0.578419 | 5.4:-9346076 | MS.gene015242:CDS |
| TTCGTGTTTCTCCTAATCAA+CGG | 0.578954 | 5.4:-9346751 | MS.gene015242:intron |
| CTACGGTAGAGAAACGGTTA+CGG | 0.585607 | 5.4:+9346349 | None:intergenic |
| AGGCCCAAAGAAGGTGAAGA+TGG | 0.590583 | 5.4:-9345998 | MS.gene015242:CDS |
| TGTCGGTGAAGAGAGAAAGT+TGG | 0.598088 | 5.4:+9347133 | None:intergenic |
| CTCTCGAACAATCACACTAA+CGG | 0.599043 | 5.4:+9347224 | None:intergenic |
| GGTCCAAAAGAAACCTATCT+GGG | 0.600943 | 5.4:+9346223 | None:intergenic |
| TGTGAATATATACCAGCATG+AGG | 0.601698 | 5.4:+9347067 | None:intergenic |
| ACGGTTACGGTAGAATATAA+CGG | 0.610597 | 5.4:+9346362 | None:intergenic |
| CTTAAAATAGCCCAAGAACA+AGG | 0.623892 | 5.4:+9346198 | None:intergenic |
| ATAATTTGGCTATGGAATGT+GGG | 0.630129 | 5.4:-9345951 | MS.gene015242:CDS |
| GCATGAGGAAAGAAGGTGAG+TGG | 0.642413 | 5.4:+9347082 | None:intergenic |
| CTAAACAAATCCGGAACCGA+CGG | 0.646252 | 5.4:+9346060 | None:intergenic |
| GGTCCTACAGTGTCAAAACA+TGG | 0.647080 | 5.4:-9346251 | MS.gene015242:CDS |
| AAATAGCCCAAGAACAAGGT+CGG | 0.648485 | 5.4:+9346202 | None:intergenic |
| AATGGGGTCACCAAGCATGT+CGG | 0.667448 | 5.4:+9347116 | None:intergenic |
| TGAGGAAAGAAGGTGAGTGG+CGG | 0.676708 | 5.4:+9347085 | None:intergenic |
| ATTGGACCAAGTCTATGCCA+GGG | 0.683595 | 5.4:-9345789 | MS.gene015242:CDS |
| TTGTTCTGTGAGCATAAACG+GGG | 0.686756 | 5.4:+9346430 | None:intergenic |
| AAGCGAGTTTGGTGTAAACT+GGG | 0.687492 | 5.4:+9346786 | None:intergenic |
| GTTGATTAGGAGAAACACGA+AGG | 0.743361 | 5.4:+9346753 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATAAAACAAAATAACTG+CGG | + | chr5.4:9346043-9346062 | None:intergenic | 15.0% |
| !! | CTTAATAACAAACTTAATCT+AGG | - | chr5.4:9346699-9346718 | MS.gene015242:intron | 20.0% |
| !! | GAAATTGATAAAGAAATAGT+TGG | - | chr5.4:9346109-9346128 | MS.gene015242:CDS | 20.0% |
| ! | AACATAGAATATCATATCTC+TGG | + | chr5.4:9346069-9346088 | None:intergenic | 25.0% |
| ! | ATGATTTATGGTGTATTAAG+AGG | - | chr5.4:9347150-9347169 | MS.gene015242:CDS | 25.0% |
| ! | GATATGATATTCTATGTTCT+TGG | - | chr5.4:9346071-9346090 | MS.gene015242:CDS | 25.0% |
| ! | TACAAAAAATGAAACCCAAA+AGG | + | chr5.4:9346963-9346982 | None:intergenic | 25.0% |
| ! | TATCTTGTGCTAATGATTTA+TGG | - | chr5.4:9347138-9347157 | MS.gene015242:CDS | 25.0% |
| ! | TGAATATTCATATATGGCAA+CGG | - | chr5.4:9346461-9346480 | MS.gene015242:CDS | 25.0% |
| ! | TGCATAAACATTTGATATGT+TGG | + | chr5.4:9346278-9346297 | None:intergenic | 25.0% |
| !! | TTTTCTTAATCTGTGTGAAT+TGG | - | chr5.4:9346016-9346035 | MS.gene015242:CDS | 25.0% |
| !!! | TTGGGTTTCATTTTTTGTAT+GGG | - | chr5.4:9346964-9346983 | MS.gene015242:intron | 25.0% |
| !!! | TTTAACGGATGCTAAATTTT+CGG | + | chr5.4:9346490-9346509 | None:intergenic | 25.0% |
| !!! | TTTGGGTTTCATTTTTTGTA+TGG | - | chr5.4:9346963-9346982 | MS.gene015242:intron | 25.0% |
| !!! | TTTTTCAGTGAAGAGTTTAA+CGG | + | chr5.4:9346505-9346524 | None:intergenic | 25.0% |
| AAACTCTTCACTGAAAAATG+CGG | - | chr5.4:9346507-9346526 | MS.gene015242:CDS | 30.0% | |
| ATAATTTGGCTATGGAATGT+GGG | - | chr5.4:9347045-9347064 | MS.gene015242:intron | 30.0% | |
| GAAATAGTTGGAATGATAAG+AGG | - | chr5.4:9346121-9346140 | MS.gene015242:CDS | 30.0% | |
| GAGGCATGGTTTAAATATAA+CGG | - | chr5.4:9346435-9346454 | MS.gene015242:CDS | 30.0% | |
| GTTGAAGCTAGTGAAAAAAA+TGG | - | chr5.4:9346413-9346432 | MS.gene015242:CDS | 30.0% | |
| ! | AAGTGTTTGGAATTCTAAAG+AGG | - | chr5.4:9346818-9346837 | MS.gene015242:CDS | 30.0% |
| ! | CAAGATAACATTTTCCAATG+AGG | + | chr5.4:9347125-9347144 | None:intergenic | 30.0% |
| ! | TTTTGTTCTGTGAGCATAAA+CGG | + | chr5.4:9346571-9346590 | None:intergenic | 30.0% |
| !! | CTTGTTGATGATTATAGTGA+TGG | - | chr5.4:9347173-9347192 | MS.gene015242:CDS | 30.0% |
| !!! | TCTTGTTGTACTGTTTTTGA+TGG | - | chr5.4:9346370-9346389 | MS.gene015242:CDS | 30.0% |
| !!! | TTCATTTTTTGTATGGGCTT+GGG | - | chr5.4:9346970-9346989 | MS.gene015242:intron | 30.0% |
| !!! | TTTCATTTTTTGTATGGGCT+TGG | - | chr5.4:9346969-9346988 | MS.gene015242:intron | 30.0% |
| AAAACTCTACGGTAGAGAAA+CGG | + | chr5.4:9346656-9346675 | None:intergenic | 35.0% | |
| AAAGAAGGTGAAGATGGTTA+AGG | - | chr5.4:9347004-9347023 | MS.gene015242:intron | 35.0% | |
| AAAGAGTAGAAGCAGTTGAA+AGG | - | chr5.4:9345817-9345836 | MS.gene015242:CDS | 35.0% | |
| ACGGTTACGGTAGAATATAA+CGG | + | chr5.4:9346637-9346656 | None:intergenic | 35.0% | |
| CATAATTTGGCTATGGAATG+TGG | - | chr5.4:9347044-9347063 | MS.gene015242:intron | 35.0% | |
| CTTAAAATAGCCCAAGAACA+AGG | + | chr5.4:9346801-9346820 | None:intergenic | 35.0% | |
| GAAGCTAGTGAAAAAAATGG+AGG | - | chr5.4:9346416-9346435 | MS.gene015242:CDS | 35.0% | |
| GTCATTAGGGAAAAACTCTA+CGG | + | chr5.4:9346667-9346686 | None:intergenic | 35.0% | |
| TAACCATCTTCACCTTCTTT+GGG | + | chr5.4:9347004-9347023 | None:intergenic | 35.0% | |
| TAGTGAAAAAAATGGAGGCA+TGG | - | chr5.4:9346421-9346440 | MS.gene015242:CDS | 35.0% | |
| TCTATGTTCTTGGTTTCAAC+AGG | - | chr5.4:9346081-9346100 | MS.gene015242:CDS | 35.0% | |
| TGCATAAAAACAGTCACATG+CGG | - | chr5.4:9346145-9346164 | MS.gene015242:CDS | 35.0% | |
| TGTGAATATATACCAGCATG+AGG | + | chr5.4:9345932-9345951 | None:intergenic | 35.0% | |
| TTAACCATCTTCACCTTCTT+TGG | + | chr5.4:9347005-9347024 | None:intergenic | 35.0% | |
| TTCGTGTTTCTCCTAATCAA+CGG | - | chr5.4:9346245-9346264 | MS.gene015242:CDS | 35.0% | |
| TTTGTTCTGTGAGCATAAAC+GGG | + | chr5.4:9346570-9346589 | None:intergenic | 35.0% | |
| ! | ACCAAACTCGCTTACATTTT+AGG | - | chr5.4:9346220-9346239 | MS.gene015242:CDS | 35.0% |
| ! | GATTATAGTGATGGTTCTGT+TGG | - | chr5.4:9347182-9347201 | MS.gene015242:CDS | 35.0% |
| ! | TGCTAAAACGACACGTATTT+TGG | - | chr5.4:9346887-9346906 | MS.gene015242:CDS | 35.0% |
| !! | CTTGGGCTATTTTAAGTGTT+TGG | - | chr5.4:9346805-9346824 | MS.gene015242:CDS | 35.0% |
| !! | TAAAGAGGTTTTTAAGCTCG+AGG | - | chr5.4:9346833-9346852 | MS.gene015242:CDS | 35.0% |
| !!! | TCATTTTTTGTATGGGCTTG+GGG | - | chr5.4:9346971-9346990 | MS.gene015242:intron | 35.0% |
| AAATAGCCCAAGAACAAGGT+CGG | + | chr5.4:9346797-9346816 | None:intergenic | 40.0% | |
| AATTATGCGCAAACCCACAA+AGG | + | chr5.4:9347031-9347050 | None:intergenic | 40.0% | |
| AGAACAGCGTCAATGTCATT+AGG | + | chr5.4:9346681-9346700 | None:intergenic | 40.0% | |
| AGAAGGAGTTAACGGAATGA+TGG | + | chr5.4:9346610-9346629 | None:intergenic | 40.0% | |
| ATGTTCTTGGTTTCAACAGG+TGG | - | chr5.4:9346084-9346103 | MS.gene015242:CDS | 40.0% | |
| ATTATGCGCAAACCCACAAA+GGG | + | chr5.4:9347030-9347049 | None:intergenic | 40.0% | |
| CCAAAAGGCCTAAACAAATC+CGG | + | chr5.4:9346948-9346967 | None:intergenic | 40.0% | |
| CTCTCGAACAATCACACTAA+CGG | + | chr5.4:9345775-9345794 | None:intergenic | 40.0% | |
| GAACAGCGTCAATGTCATTA+GGG | + | chr5.4:9346680-9346699 | None:intergenic | 40.0% | |
| GCCTAAAATGTAAGCGAGTT+TGG | + | chr5.4:9346224-9346243 | None:intergenic | 40.0% | |
| GGTCCAAAAGAAACCTATCT+GGG | + | chr5.4:9346776-9346795 | None:intergenic | 40.0% | |
| GTTGAAAGGACATGTGAAGT+TGG | - | chr5.4:9345831-9345850 | MS.gene015242:CDS | 40.0% | |
| GTTGATTAGGAGAAACACGA+AGG | + | chr5.4:9346246-9346265 | None:intergenic | 40.0% | |
| GTTTGCGCATAATTTGGCTA+TGG | - | chr5.4:9347037-9347056 | MS.gene015242:intron | 40.0% | |
| TAGAATATAACGGCGTCAGA+AGG | + | chr5.4:9346627-9346646 | None:intergenic | 40.0% | |
| TATACCAGCATGAGGAAAGA+AGG | + | chr5.4:9345924-9345943 | None:intergenic | 40.0% | |
| TCATGTGAACCATTGAGGTT+TGG | - | chr5.4:9347095-9347114 | MS.gene015242:CDS | 40.0% | |
| TGAGGTATACCAAACCTCAA+TGG | + | chr5.4:9347107-9347126 | None:intergenic | 40.0% | |
| TTGCTTCATGTGAACCATTG+AGG | - | chr5.4:9347090-9347109 | MS.gene015242:CDS | 40.0% | |
| TTGTGGGTTTGCGCATAATT+TGG | - | chr5.4:9347031-9347050 | MS.gene015242:intron | 40.0% | |
| TTGTTCTGTGAGCATAAACG+GGG | + | chr5.4:9346569-9346588 | None:intergenic | 40.0% | |
| ! | AAGAGAGAAAGTTGGTCACT+AGG | + | chr5.4:9345858-9345877 | None:intergenic | 40.0% |
| ! | CGGCGCTGAATATTCATATA+TGG | - | chr5.4:9346455-9346474 | MS.gene015242:CDS | 40.0% |
| ! | TGAGGTTTGGTATACCTCAT+TGG | - | chr5.4:9347108-9347127 | MS.gene015242:CDS | 40.0% |
| !! | AAACGACACGTATTTTGGAC+CGG | - | chr5.4:9346892-9346911 | MS.gene015242:CDS | 40.0% |
| !! | AAGCGAGTTTGGTGTAAACT+GGG | + | chr5.4:9346213-9346232 | None:intergenic | 40.0% |
| !! | CGGATTTGTTTAGGCCTTTT+GGG | - | chr5.4:9346946-9346965 | MS.gene015242:intron | 40.0% |
| !! | CTCTCTAGGATCCACAAAAA+TGG | + | chr5.4:9347237-9347256 | None:intergenic | 40.0% |
| !! | TAAGCGAGTTTGGTGTAAAC+TGG | + | chr5.4:9346214-9346233 | None:intergenic | 40.0% |
| !!! | CATTTTTTGTATGGGCTTGG+GGG | - | chr5.4:9346972-9346991 | MS.gene015242:intron | 40.0% |
| !!! | TGTACTGTTTTTGATGGTGC+AGG | - | chr5.4:9346376-9346395 | MS.gene015242:CDS | 40.0% |
| !!! | TTTTGATGGTGCAGGAGAAT+GGG | - | chr5.4:9346384-9346403 | MS.gene015242:CDS | 40.0% |
| !!! | TTTTTGATGGTGCAGGAGAA+TGG | - | chr5.4:9346383-9346402 | MS.gene015242:CDS | 40.0% |
| AAAAGAAACCTATCTGGGCC+AGG | + | chr5.4:9346771-9346790 | None:intergenic | 45.0% | |
| AAGATGGTTAAGGCCCTTTG+TGG | - | chr5.4:9347014-9347033 | MS.gene015242:intron | 45.0% | |
| AGATGGTTAAGGCCCTTTGT+GGG | - | chr5.4:9347015-9347034 | MS.gene015242:intron | 45.0% | |
| ATTGGACCAAGTCTATGCCA+GGG | - | chr5.4:9347207-9347226 | MS.gene015242:CDS | 45.0% | |
| CGGTCCAAAAGAAACCTATC+TGG | + | chr5.4:9346777-9346796 | None:intergenic | 45.0% | |
| CTAAACAAATCCGGAACCGA+CGG | + | chr5.4:9346939-9346958 | None:intergenic | 45.0% | |
| CTACGGTAGAGAAACGGTTA+CGG | + | chr5.4:9346650-9346669 | None:intergenic | 45.0% | |
| GGTCCTACAGTGTCAAAACA+TGG | - | chr5.4:9346745-9346764 | MS.gene015242:intron | 45.0% | |
| TACAGTGTCAAAACATGGCC+TGG | - | chr5.4:9346750-9346769 | MS.gene015242:intron | 45.0% | |
| TCCACAAAAATGGAGATCCC+TGG | + | chr5.4:9347227-9347246 | None:intergenic | 45.0% | |
| TGACGAGAATTGACGGTGTA+CGG | + | chr5.4:9346545-9346564 | None:intergenic | 45.0% | |
| TGTCGGTGAAGAGAGAAAGT+TGG | + | chr5.4:9345866-9345885 | None:intergenic | 45.0% | |
| TTTGGACCGACCTTGTTCTT+GGG | - | chr5.4:9346788-9346807 | MS.gene015242:CDS | 45.0% | |
| ! | ACTTTTCTTGCCGTACCAAG+TGG | - | chr5.4:9346723-9346742 | MS.gene015242:intron | 45.0% |
| ! | CTTTTCTTGCCGTACCAAGT+GGG | - | chr5.4:9346724-9346743 | MS.gene015242:intron | 45.0% |
| ! | TGGCCCAGATAGGTTTCTTT+TGG | - | chr5.4:9346770-9346789 | MS.gene015242:CDS | 45.0% |
| ! | TTTTGGACCGACCTTGTTCT+TGG | - | chr5.4:9346787-9346806 | MS.gene015242:CDS | 45.0% |
| !! | AACGACACGTATTTTGGACC+GGG | - | chr5.4:9346893-9346912 | MS.gene015242:CDS | 45.0% |
| !! | CCGGATTTGTTTAGGCCTTT+TGG | - | chr5.4:9346945-9346964 | MS.gene015242:intron | 45.0% |
| !! | GTGATGGTTCTGTTGGTGAT+TGG | - | chr5.4:9347189-9347208 | MS.gene015242:CDS | 45.0% |
| !! | GTTTTTAAGCTCGAGGTACG+TGG | - | chr5.4:9346840-9346859 | MS.gene015242:CDS | 45.0% |
| !! | TTGGTAGCGTACCGTTGATT+AGG | + | chr5.4:9346259-9346278 | None:intergenic | 45.0% |
| !!! | AGGCCATGTTTTGACACTGT+AGG | + | chr5.4:9346751-9346770 | None:intergenic | 45.0% |
| AATGGGGTCACCAAGCATGT+CGG | + | chr5.4:9345883-9345902 | None:intergenic | 50.0% | |
| ACGGCGTCAGAAGGAGTTAA+CGG | + | chr5.4:9346618-9346637 | None:intergenic | 50.0% | |
| ACGGGGTTGACGAGAATTGA+CGG | + | chr5.4:9346552-9346571 | None:intergenic | 50.0% | |
| ACTGTAGGACCCACTTGGTA+CGG | + | chr5.4:9346736-9346755 | None:intergenic | 50.0% | |
| AGGCCCAAAGAAGGTGAAGA+TGG | - | chr5.4:9346998-9347017 | MS.gene015242:intron | 50.0% | |
| CTCACCTTCTTTCCTCATGC+TGG | - | chr5.4:9345917-9345936 | MS.gene015242:CDS | 50.0% | |
| GATTGGACCAAGTCTATGCC+AGG | - | chr5.4:9347206-9347225 | MS.gene015242:CDS | 50.0% | |
| GCATGAGGAAAGAAGGTGAG+TGG | + | chr5.4:9345917-9345936 | None:intergenic | 50.0% | |
| GGTGCAGGAGAATGGGAATA+GGG | - | chr5.4:9346391-9346410 | MS.gene015242:CDS | 50.0% | |
| TCTCTCTTCACCGACATGCT+TGG | - | chr5.4:9345870-9345889 | MS.gene015242:CDS | 50.0% | |
| TGAGGAAAGAAGGTGAGTGG+CGG | + | chr5.4:9345914-9345933 | None:intergenic | 50.0% | |
| TGGCTATGGAATGTGGGTGT+GGG | - | chr5.4:9347051-9347070 | MS.gene015242:intron | 50.0% | |
| TGGTGCAGGAGAATGGGAAT+AGG | - | chr5.4:9346390-9346409 | MS.gene015242:CDS | 50.0% | |
| TTGACACTGTAGGACCCACT+TGG | + | chr5.4:9346741-9346760 | None:intergenic | 50.0% | |
| TTGGCTATGGAATGTGGGTG+TGG | - | chr5.4:9347050-9347069 | MS.gene015242:intron | 50.0% | |
| !! | CGTCGGTTCCGGATTTGTTT+AGG | - | chr5.4:9346937-9346956 | MS.gene015242:intron | 50.0% |
| !! | GCCAGGGATCTCCATTTTTG+TGG | - | chr5.4:9347223-9347242 | MS.gene015242:CDS | 50.0% |
| AAACATGGCCTGGCCCAGAT+AGG | - | chr5.4:9346760-9346779 | MS.gene015242:CDS | 55.0% | |
| ACCGACGGTACCTTCAACCA+TGG | + | chr5.4:9346924-9346943 | None:intergenic | 55.0% | |
| CCTTCAACCATGGCAAAGCC+CGG | + | chr5.4:9346914-9346933 | None:intergenic | 55.0% | |
| GGAGATCCCTGGCATAGACT+TGG | + | chr5.4:9347216-9347235 | None:intergenic | 55.0% | |
| GGCTATGGAATGTGGGTGTG+GGG | - | chr5.4:9347052-9347071 | MS.gene015242:intron | 55.0% | |
| TTGTATGGGCTTGGGGGTGA+AGG | - | chr5.4:9346978-9346997 | MS.gene015242:intron | 55.0% | |
| ! | GCTTGGTGACCCCATTTGCA+GGG | - | chr5.4:9345887-9345906 | MS.gene015242:CDS | 55.0% |
| ! | TGCTTGGTGACCCCATTTGC+AGG | - | chr5.4:9345886-9345905 | MS.gene015242:CDS | 55.0% |
| ! | TTTTGGACCGGGCTTTGCCA+TGG | - | chr5.4:9346904-9346923 | MS.gene015242:intron | 55.0% |
| !! | GCCATGGTTGAAGGTACCGT+CGG | - | chr5.4:9346920-9346939 | MS.gene015242:intron | 55.0% |
| !! | GTTGAAGGTACCGTCGGTTC+CGG | - | chr5.4:9346926-9346945 | MS.gene015242:intron | 55.0% |
| CCGGGCTTTGCCATGGTTGA+AGG | - | chr5.4:9346911-9346930 | MS.gene015242:intron | 60.0% | |
| GGAATGTGGGTGTGGGGTTG+TGG | - | chr5.4:9347058-9347077 | MS.gene015242:intron | 60.0% | |
| GTGTGGGGTTGTGGCTACTG+AGG | - | chr5.4:9347067-9347086 | MS.gene015242:intron | 60.0% | |
| TGGGGGTGAAGGCCCAAAGA+AGG | - | chr5.4:9346989-9347008 | MS.gene015242:intron | 60.0% | |
| !! | AGTGGCGGACCCTGCAAATG+GGG | + | chr5.4:9345899-9345918 | None:intergenic | 60.0% |
| !! | GAGTGGCGGACCCTGCAAAT+GGG | + | chr5.4:9345900-9345919 | None:intergenic | 60.0% |
| !! | TGAGTGGCGGACCCTGCAAA+TGG | + | chr5.4:9345901-9345920 | None:intergenic | 60.0% |
| GCGCGTCGCGTGTCAAGCGC+GGG | - | chr5.4:9346862-9346881 | MS.gene015242:CDS | 75.0% | |
| GGCGCGTCGCGTGTCAAGCG+CGG | - | chr5.4:9346861-9346880 | MS.gene015242:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 9345756 | 9347262 | 9345756 | ID=MS.gene015242 |
| chr5.4 | mRNA | 9345756 | 9347262 | 9345756 | ID=MS.gene015242.t1;Parent=MS.gene015242 |
| chr5.4 | exon | 9347080 | 9347262 | 9347080 | ID=MS.gene015242.t1.exon1;Parent=MS.gene015242.t1 |
| chr5.4 | CDS | 9347080 | 9347262 | 9347080 | ID=cds.MS.gene015242.t1;Parent=MS.gene015242.t1 |
| chr5.4 | exon | 9346752 | 9346915 | 9346752 | ID=MS.gene015242.t1.exon2;Parent=MS.gene015242.t1 |
| chr5.4 | CDS | 9346752 | 9346915 | 9346752 | ID=cds.MS.gene015242.t1;Parent=MS.gene015242.t1 |
| chr5.4 | exon | 9345756 | 9346620 | 9345756 | ID=MS.gene015242.t1.exon3;Parent=MS.gene015242.t1 |
| chr5.4 | CDS | 9345756 | 9346620 | 9345756 | ID=cds.MS.gene015242.t1;Parent=MS.gene015242.t1 |
| Gene Sequence |
| Protein sequence |
