AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene09583

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09583.t1 MTR_5g015810 96.030 403 16 0 1 403 1 403 0.0 804
MS.gene09583.t1 MTR_5g015810 96.084 332 13 0 72 403 1 332 0.0 668
MS.gene09583.t1 MTR_4g095700 70.905 409 109 4 5 403 3 411 0.0 605
MS.gene09583.t1 MTR_5g015810 96.503 286 10 0 118 403 1 286 0.0 577
MS.gene09583.t1 MTR_4g007130 47.816 412 186 8 2 403 17 409 8.72e-126 369
MS.gene09583.t1 MTR_3g465010 47.870 399 184 7 11 403 8 388 3.22e-120 354
MS.gene09583.t1 MTR_4g122030 33.907 407 188 14 9 402 11 349 1.98e-54 184
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09583.t1 AT2G23060 68.116 414 114 4 6 403 2 413 0.0 567
MS.gene09583.t1 AT4G37580 67.082 401 125 3 10 403 3 403 0.0 543
MS.gene09583.t1 AT5G67430 60.000 395 142 6 9 403 8 386 4.97e-167 473
MS.gene09583.t1 AT4G37580 67.742 341 106 2 67 403 6 346 1.37e-165 468
MS.gene09583.t1 AT2G23060 69.892 279 81 1 128 403 1 279 1.18e-143 410
MS.gene09583.t1 AT5G67430 61.145 332 118 5 72 403 1 321 9.27e-142 407
MS.gene09583.t1 AT2G30090 42.040 402 194 7 11 403 15 386 8.96e-96 292

Find 97 sgRNAs with CRISPR-Local

Find 141 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTAAAACGACACGTATTT+TGG 0.139903 5.2:-7530450 MS.gene09583:CDS
TTAACCATCTTCACCTTCTT+TGG 0.150962 5.2:+7530335 None:intergenic
TATCTTGTGCTAATGATTTA+TGG 0.162688 5.2:-7530199 MS.gene09583:CDS
CCGGATTTGTTTAGGCCTTT+TGG 0.177590 5.2:-7530392 MS.gene09583:CDS
TGGCCCAGATAGGTTTCTTT+TGG 0.229875 5.2:-7530567 MS.gene09583:CDS
TGCTTGGTGACCCCATTTGC+AGG 0.320702 5.2:-7531456 MS.gene09583:CDS
TAACCATCTTCACCTTCTTT+GGG 0.322009 5.2:+7530336 None:intergenic
GCCTAAAATGTAAGCGAGTT+TGG 0.325207 5.2:+7531121 None:intergenic
AGAACAGCGTCAATGTCATT+AGG 0.331188 5.2:+7530659 None:intergenic
CTTAATAACAAACTTAATCT+AGG 0.336122 5.2:-7530638 MS.gene09583:CDS
TAAGCGAGTTTGGTGTAAAC+TGG 0.336993 5.2:+7531131 None:intergenic
TTGTGGGTTTGCGCATAATA+TGG 0.337467 5.2:-7530306 MS.gene09583:CDS
TTTGGACCCACCTTGTTCTT+GGG 0.345593 5.2:-7530549 MS.gene09583:CDS
CGTCGGTTCCGGATTTGTTT+AGG 0.361537 5.2:-7530400 MS.gene09583:CDS
CGGCGCTGAATATTCATATA+TGG 0.362736 5.2:-7530882 MS.gene09583:CDS
TTGGTAGCGTACCGTTGATT+AGG 0.367983 5.2:+7531086 None:intergenic
GGGTCCAAAAGAAACCTATC+TGG 0.369698 5.2:+7530563 None:intergenic
GTTGAAGGTACCGTCGGTTC+CGG 0.377354 5.2:-7530411 MS.gene09583:CDS
ATGATTTATGGTGTATTAAG+AGG 0.386924 5.2:-7530187 MS.gene09583:CDS
TTTGTTCTGTGAGCATAAAC+GGG 0.400112 5.2:+7530770 None:intergenic
CCGGGCTTTGCCGTGGTTGA+AGG 0.401375 5.2:-7530426 MS.gene09583:CDS
TGAGGTTTGGTATACCTCAT+TGG 0.402328 5.2:-7530229 MS.gene09583:CDS
TGGTGCAGGAGAATGGGAAT+AGG 0.414994 5.2:-7530947 MS.gene09583:intron
GAACAGCGTCAATGTCATTA+GGG 0.415763 5.2:+7530660 None:intergenic
TGAGTGGCGGACCCTGCAAA+TGG 0.420570 5.2:+7531444 None:intergenic
GGCGCGTCGCGTGTCAAGCG+CGG 0.428563 5.2:-7530476 MS.gene09583:CDS
AAGATGGTTAAGGCCCTTTG+TGG 0.430907 5.2:-7530323 MS.gene09583:CDS
GCGCGTCGCGTGTCAAGCGC+GGG 0.431919 5.2:-7530475 MS.gene09583:CDS
GAGTGGCGGACCCTGCAAAT+GGG 0.439578 5.2:+7531445 None:intergenic
CTCACCTTCTTTCCTCATGC+TGG 0.441437 5.2:-7531425 MS.gene09583:intron
GTGATGGTTCTGTTGGTGAT+TGG 0.447246 5.2:-7530148 MS.gene09583:CDS
GAAATAGTTGGAATGATAAG+AGG 0.455218 5.2:-7531221 MS.gene09583:CDS
GGTGCAGGAGAATGGGAATA+GGG 0.455976 5.2:-7530946 MS.gene09583:intron
GGAATGTGAGTGTGGGGTTG+TGG 0.464310 5.2:-7530279 MS.gene09583:CDS
GAAATTGATAAAGAAATAGT+TGG 0.468243 5.2:-7531233 MS.gene09583:CDS
TGACGAGAATTGACGGTGTA+CGG 0.468550 5.2:+7530795 None:intergenic
TCATGTGAACCATTGAGGTT+TGG 0.476876 5.2:-7530242 MS.gene09583:CDS
TCTCTCTTCACCGACATGCT+TGG 0.485318 5.2:-7531472 MS.gene09583:CDS
TACAGTGTCAAAACATGGCC+TGG 0.491753 5.2:-7530587 MS.gene09583:CDS
AGATGGTTAAGGCCCTTTGT+GGG 0.493646 5.2:-7530322 MS.gene09583:CDS
AAGTGTTTGGAATTCTAAAG+AGG 0.505817 5.2:-7530519 MS.gene09583:CDS
CTTGTTGATGATTATAGTGA+TGG 0.506465 5.2:-7530164 MS.gene09583:CDS
GATTGGACCAAGTCTATGCC+AGG 0.509333 5.2:-7530131 MS.gene09583:CDS
CCAAAAGGCCTAAACAAATC+CGG 0.512387 5.2:+7530392 None:intergenic
AAAGAAGGTGAAGATGGTTA+AGG 0.518056 5.2:-7530333 MS.gene09583:CDS
CCTTCAACCACGGCAAAGCC+CGG 0.518891 5.2:+7530426 None:intergenic
ACAACTTCTTAAATCTCTCT+AGG 0.519282 5.2:+7530089 None:intergenic
TTGCTTCATGTGAACCATTG+AGG 0.519399 5.2:-7530247 MS.gene09583:CDS
GATTATAGTGATGGTTCTGT+TGG 0.524315 5.2:-7530155 MS.gene09583:CDS
ACGGCGTCAGAAGGAGTTAA+CGG 0.524819 5.2:+7530722 None:intergenic
TATACCAGCATGAGGAAAGA+AGG 0.530072 5.2:+7531421 None:intergenic
ACCGACGGTACCTTCAACCA+CGG 0.534359 5.2:+7530416 None:intergenic
AAACATGGCCTGGCCCAGAT+AGG 0.535009 5.2:-7530577 MS.gene09583:CDS
TAGAATATAACGGCGTCAGA+AGG 0.539306 5.2:+7530713 None:intergenic
AAAAGAAACCTATCTGGGCC+AGG 0.540432 5.2:+7530569 None:intergenic
GCTTGGTGACCCCATTTGCA+GGG 0.548286 5.2:-7531455 MS.gene09583:CDS
GTTGAAAGGACATGTGAAGT+TGG 0.549405 5.2:-7531511 MS.gene09583:CDS
AAGAGAGAAAGTTGGTCACT+AGG 0.553217 5.2:+7531487 None:intergenic
CTCTCGAACAATTACACTAA+CGG 0.553584 5.2:+7531570 None:intergenic
AAAGAGTAGAAGCAGTTGAA+AGG 0.557149 5.2:-7531525 MS.gene09583:CDS
TATTATGCGCAAACCCACAA+AGG 0.558832 5.2:+7530309 None:intergenic
AGAAGGAGTTAACGGAATGA+TGG 0.559153 5.2:+7530730 None:intergenic
GGAGATCCCTGGCATAGACT+TGG 0.559706 5.2:+7530124 None:intergenic
TGAGGTATACCAAACCTCAA+TGG 0.563011 5.2:+7530233 None:intergenic
TGGCTATGGAATGTGAGTGT+GGG 0.565021 5.2:-7530286 MS.gene09583:CDS
ACGGGGTTGACGAGAATTGA+CGG 0.566648 5.2:+7530788 None:intergenic
AAAACTCTACGGTAGAGAAA+CGG 0.566914 5.2:+7530684 None:intergenic
GCCGTGGTTGAAGGTACCGT+CGG 0.570164 5.2:-7530417 MS.gene09583:CDS
ACTGTAGGACCCACTTGGTA+CGG 0.571473 5.2:+7530604 None:intergenic
TTGACACTGTAGGACCCACT+TGG 0.573131 5.2:+7530599 None:intergenic
AGTGGCGGACCCTGCAAATG+GGG 0.573181 5.2:+7531446 None:intergenic
TGAATATTCATATATGGCAA+CGG 0.574189 5.2:-7530876 MS.gene09583:CDS
ATTATGCGCAAACCCACAAA+GGG 0.577889 5.2:+7530310 None:intergenic
TTCGTGTTTCTCCTAATCAA+CGG 0.578954 5.2:-7531097 MS.gene09583:intron
GAGGCATGGTTTAAAGATAA+CGG 0.582283 5.2:-7530902 MS.gene09583:CDS
CTACGGTAGAGAAACGGTTA+CGG 0.585607 5.2:+7530690 None:intergenic
AGGCCCAAAGAAGGTGAAGA+TGG 0.590583 5.2:-7530339 MS.gene09583:CDS
GGTCCAAAAGAAACCTATCT+GGG 0.592928 5.2:+7530564 None:intergenic
TGTCGGTGAAGAGAGAAAGT+TGG 0.598088 5.2:+7531479 None:intergenic
TGTGAATATATACCAGCATG+AGG 0.601698 5.2:+7531413 None:intergenic
GTTTGCGCATAATATGGCTA+TGG 0.608909 5.2:-7530300 MS.gene09583:CDS
ATGGCTATGGAATGTGAGTG+TGG 0.610584 5.2:-7530287 MS.gene09583:CDS
ACGGTTACGGTAGAATATAA+CGG 0.610597 5.2:+7530703 None:intergenic
GGCTATGGAATGTGAGTGTG+GGG 0.614225 5.2:-7530285 MS.gene09583:CDS
CTTAAAATAGCCCAAGAACA+AGG 0.618666 5.2:+7530539 None:intergenic
AAATAGCCCAAGAACAAGGT+GGG 0.635584 5.2:+7530543 None:intergenic
GCATGAGGAAAGAAGGTGAG+TGG 0.642413 5.2:+7531428 None:intergenic
CTAAACAAATCCGGAACCGA+CGG 0.646252 5.2:+7530401 None:intergenic
GGTCCTACAGTGTCAAAACA+TGG 0.647080 5.2:-7530592 MS.gene09583:CDS
GTGTGGGGTTGTGGCTACTG+AGG 0.648130 5.2:-7530270 MS.gene09583:CDS
AATGGGGTCACCAAGCATGT+CGG 0.667448 5.2:+7531462 None:intergenic
AAAATAGCCCAAGAACAAGG+TGG 0.667856 5.2:+7530542 None:intergenic
TGAGGAAAGAAGGTGAGTGG+CGG 0.676708 5.2:+7531431 None:intergenic
ATTGGACCAAGTCTATGCCA+GGG 0.683595 5.2:-7530130 MS.gene09583:CDS
TTGTTCTGTGAGCATAAACG+GGG 0.686756 5.2:+7530771 None:intergenic
AAGCGAGTTTGGTGTAAACT+GGG 0.687492 5.2:+7531132 None:intergenic
GTTGATTAGGAGAAACACGA+AGG 0.743361 5.2:+7531099 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATAAAACAAAATAACTG+CGG + chr5.2:7530384-7530403 None:intergenic 15.0%
!! CTTAATAACAAACTTAATCT+AGG - chr5.2:7531045-7531064 MS.gene09583:intron 20.0%
!! GAAATTGATAAAGAAATAGT+TGG - chr5.2:7530450-7530469 MS.gene09583:CDS 20.0%
! AACATAGAATATCATATCTC+TGG + chr5.2:7530410-7530429 None:intergenic 25.0%
! ATGATTTATGGTGTATTAAG+AGG - chr5.2:7531496-7531515 MS.gene09583:CDS 25.0%
! GATATGATATTCTATGTTCT+TGG - chr5.2:7530412-7530431 MS.gene09583:CDS 25.0%
! TACAAAAAATGAAACCCAAA+AGG + chr5.2:7531309-7531328 None:intergenic 25.0%
! TATCTTGTGCTAATGATTTA+TGG - chr5.2:7531484-7531503 MS.gene09583:CDS 25.0%
! TGAATATTCATATATGGCAA+CGG - chr5.2:7530807-7530826 MS.gene09583:CDS 25.0%
! TGCATAAACATTTGATATGT+TGG + chr5.2:7530619-7530638 None:intergenic 25.0%
!! TTTTCTTAATCTGTGTGAAT+TGG - chr5.2:7530357-7530376 MS.gene09583:CDS 25.0%
!!! TTGGGTTTCATTTTTTGTAT+GGG - chr5.2:7531310-7531329 MS.gene09583:intron 25.0%
!!! TTTAACGGATGCTAAATTTT+CGG + chr5.2:7530836-7530855 None:intergenic 25.0%
!!! TTTGGGTTTCATTTTTTGTA+TGG - chr5.2:7531309-7531328 MS.gene09583:intron 25.0%
!!! TTTTTCAGTGAAGAGTTTAA+CGG + chr5.2:7530851-7530870 None:intergenic 25.0%
AAACTCTTCACTGAAAAATG+CGG - chr5.2:7530853-7530872 MS.gene09583:CDS 30.0%
GAAATAGTTGGAATGATAAG+AGG - chr5.2:7530462-7530481 MS.gene09583:CDS 30.0%
GTTGAAGCTAGTGAAAAAAA+TGG - chr5.2:7530759-7530778 MS.gene09583:CDS 30.0%
TGCATAAAAACAGTTACATG+CGG - chr5.2:7530486-7530505 MS.gene09583:CDS 30.0%
! AAGTGTTTGGAATTCTAAAG+AGG - chr5.2:7531164-7531183 MS.gene09583:CDS 30.0%
! CAAGATAACATTTTCCAATG+AGG + chr5.2:7531471-7531490 None:intergenic 30.0%
! TTTTGTTCTGTGAGCATAAA+CGG + chr5.2:7530917-7530936 None:intergenic 30.0%
!! CTTGTTGATGATTATAGTGA+TGG - chr5.2:7531519-7531538 MS.gene09583:CDS 30.0%
!!! TCTTGTTGTACTGTTTTTGA+TGG - chr5.2:7530716-7530735 MS.gene09583:CDS 30.0%
!!! TTCATTTTTTGTATGGGCTT+GGG - chr5.2:7531316-7531335 MS.gene09583:intron 30.0%
!!! TTTCATTTTTTGTATGGGCT+TGG - chr5.2:7531315-7531334 MS.gene09583:intron 30.0%
AAAACTCTACGGTAGAGAAA+CGG + chr5.2:7531002-7531021 None:intergenic 35.0%
AAAGAAGGTGAAGATGGTTA+AGG - chr5.2:7531350-7531369 MS.gene09583:intron 35.0%
AAAGAGTAGAAGCAGTTGAA+AGG - chr5.2:7530158-7530177 MS.gene09583:CDS 35.0%
ACGGTTACGGTAGAATATAA+CGG + chr5.2:7530983-7531002 None:intergenic 35.0%
CTCTCGAACAATTACACTAA+CGG + chr5.2:7530116-7530135 None:intergenic 35.0%
CTTAAAATAGCCCAAGAACA+AGG + chr5.2:7531147-7531166 None:intergenic 35.0%
GAAGCTAGTGAAAAAAATGG+AGG - chr5.2:7530762-7530781 MS.gene09583:CDS 35.0%
GAGGCATGGTTTAAAGATAA+CGG - chr5.2:7530781-7530800 MS.gene09583:CDS 35.0%
GTCATTAGGGAAAAACTCTA+CGG + chr5.2:7531013-7531032 None:intergenic 35.0%
TAACCATCTTCACCTTCTTT+GGG + chr5.2:7531350-7531369 None:intergenic 35.0%
TAGTGAAAAAAATGGAGGCA+TGG - chr5.2:7530767-7530786 MS.gene09583:CDS 35.0%
TCTATGTTCTTGGTTTCAAC+AGG - chr5.2:7530422-7530441 MS.gene09583:CDS 35.0%
TGTGAATATATACCAGCATG+AGG + chr5.2:7530273-7530292 None:intergenic 35.0%
TTAACCATCTTCACCTTCTT+TGG + chr5.2:7531351-7531370 None:intergenic 35.0%
TTCGTGTTTCTCCTAATCAA+CGG - chr5.2:7530586-7530605 MS.gene09583:CDS 35.0%
TTTGTTCTGTGAGCATAAAC+GGG + chr5.2:7530916-7530935 None:intergenic 35.0%
! ACCAAACTCGCTTACATTTT+AGG - chr5.2:7530561-7530580 MS.gene09583:CDS 35.0%
! GATTATAGTGATGGTTCTGT+TGG - chr5.2:7531528-7531547 MS.gene09583:CDS 35.0%
! TGCTAAAACGACACGTATTT+TGG - chr5.2:7531233-7531252 MS.gene09583:CDS 35.0%
!! CTTGGGCTATTTTAAGTGTT+TGG - chr5.2:7531151-7531170 MS.gene09583:CDS 35.0%
!! TAAAGAGGTTTTTAAGCTCG+AGG - chr5.2:7531179-7531198 MS.gene09583:CDS 35.0%
!!! TCATTTTTTGTATGGGCTTG+GGG - chr5.2:7531317-7531336 MS.gene09583:intron 35.0%
AAAATAGCCCAAGAACAAGG+TGG + chr5.2:7531144-7531163 None:intergenic 40.0%
AAATAGCCCAAGAACAAGGT+GGG + chr5.2:7531143-7531162 None:intergenic 40.0%
AGAACAGCGTCAATGTCATT+AGG + chr5.2:7531027-7531046 None:intergenic 40.0%
AGAAGGAGTTAACGGAATGA+TGG + chr5.2:7530956-7530975 None:intergenic 40.0%
ATGTTCTTGGTTTCAACAGG+TGG - chr5.2:7530425-7530444 MS.gene09583:CDS 40.0%
ATTATGCGCAAACCCACAAA+GGG + chr5.2:7531376-7531395 None:intergenic 40.0%
CCAAAAGGCCTAAACAAATC+CGG + chr5.2:7531294-7531313 None:intergenic 40.0%
GAACAGCGTCAATGTCATTA+GGG + chr5.2:7531026-7531045 None:intergenic 40.0%
GCCTAAAATGTAAGCGAGTT+TGG + chr5.2:7530565-7530584 None:intergenic 40.0%
GGTCCAAAAGAAACCTATCT+GGG + chr5.2:7531122-7531141 None:intergenic 40.0%
GTTGAAAGGACATGTGAAGT+TGG - chr5.2:7530172-7530191 MS.gene09583:CDS 40.0%
GTTGATTAGGAGAAACACGA+AGG + chr5.2:7530587-7530606 None:intergenic 40.0%
GTTTGCGCATAATATGGCTA+TGG - chr5.2:7531383-7531402 MS.gene09583:intron 40.0%
TAGAATATAACGGCGTCAGA+AGG + chr5.2:7530973-7530992 None:intergenic 40.0%
TATACCAGCATGAGGAAAGA+AGG + chr5.2:7530265-7530284 None:intergenic 40.0%
TATTATGCGCAAACCCACAA+AGG + chr5.2:7531377-7531396 None:intergenic 40.0%
TCATGTGAACCATTGAGGTT+TGG - chr5.2:7531441-7531460 MS.gene09583:CDS 40.0%
TGAGGTATACCAAACCTCAA+TGG + chr5.2:7531453-7531472 None:intergenic 40.0%
TTGCTTCATGTGAACCATTG+AGG - chr5.2:7531436-7531455 MS.gene09583:CDS 40.0%
TTGTGGGTTTGCGCATAATA+TGG - chr5.2:7531377-7531396 MS.gene09583:intron 40.0%
TTGTTCTGTGAGCATAAACG+GGG + chr5.2:7530915-7530934 None:intergenic 40.0%
! AAGAGAGAAAGTTGGTCACT+AGG + chr5.2:7530199-7530218 None:intergenic 40.0%
! CGGCGCTGAATATTCATATA+TGG - chr5.2:7530801-7530820 MS.gene09583:CDS 40.0%
! TGAGGTTTGGTATACCTCAT+TGG - chr5.2:7531454-7531473 MS.gene09583:CDS 40.0%
!! AAACGACACGTATTTTGGAC+CGG - chr5.2:7531238-7531257 MS.gene09583:CDS 40.0%
!! AAGCGAGTTTGGTGTAAACT+GGG + chr5.2:7530554-7530573 None:intergenic 40.0%
!! CGGATTTGTTTAGGCCTTTT+GGG - chr5.2:7531292-7531311 MS.gene09583:intron 40.0%
!! CTCTCTAGGATCCACAAAAA+TGG + chr5.2:7531583-7531602 None:intergenic 40.0%
!! TAAGCGAGTTTGGTGTAAAC+TGG + chr5.2:7530555-7530574 None:intergenic 40.0%
!!! CATTTTTTGTATGGGCTTGG+GGG - chr5.2:7531318-7531337 MS.gene09583:intron 40.0%
!!! TGTACTGTTTTTGATGGTGC+AGG - chr5.2:7530722-7530741 MS.gene09583:CDS 40.0%
!!! TTTTGATGGTGCAGGAGAAT+GGG - chr5.2:7530730-7530749 MS.gene09583:CDS 40.0%
!!! TTTTTGATGGTGCAGGAGAA+TGG - chr5.2:7530729-7530748 MS.gene09583:CDS 40.0%
AAAAGAAACCTATCTGGGCC+AGG + chr5.2:7531117-7531136 None:intergenic 45.0%
AAGATGGTTAAGGCCCTTTG+TGG - chr5.2:7531360-7531379 MS.gene09583:intron 45.0%
AGATGGTTAAGGCCCTTTGT+GGG - chr5.2:7531361-7531380 MS.gene09583:intron 45.0%
ATGGCTATGGAATGTGAGTG+TGG - chr5.2:7531396-7531415 MS.gene09583:intron 45.0%
ATTGGACCAAGTCTATGCCA+GGG - chr5.2:7531553-7531572 MS.gene09583:CDS 45.0%
CTAAACAAATCCGGAACCGA+CGG + chr5.2:7531285-7531304 None:intergenic 45.0%
CTACGGTAGAGAAACGGTTA+CGG + chr5.2:7530996-7531015 None:intergenic 45.0%
GGGTCCAAAAGAAACCTATC+TGG + chr5.2:7531123-7531142 None:intergenic 45.0%
GGTCCTACAGTGTCAAAACA+TGG - chr5.2:7531091-7531110 MS.gene09583:intron 45.0%
TACAGTGTCAAAACATGGCC+TGG - chr5.2:7531096-7531115 MS.gene09583:intron 45.0%
TCCACAAAAATGGAGATCCC+TGG + chr5.2:7531573-7531592 None:intergenic 45.0%
TGACGAGAATTGACGGTGTA+CGG + chr5.2:7530891-7530910 None:intergenic 45.0%
TGGCTATGGAATGTGAGTGT+GGG - chr5.2:7531397-7531416 MS.gene09583:intron 45.0%
TGTCGGTGAAGAGAGAAAGT+TGG + chr5.2:7530207-7530226 None:intergenic 45.0%
TTTGGACCCACCTTGTTCTT+GGG - chr5.2:7531134-7531153 MS.gene09583:CDS 45.0%
! ACTTTTCTTGCCGTACCAAG+TGG - chr5.2:7531069-7531088 MS.gene09583:intron 45.0%
! CTTTTCTTGCCGTACCAAGT+GGG - chr5.2:7531070-7531089 MS.gene09583:intron 45.0%
! TGGCCCAGATAGGTTTCTTT+TGG - chr5.2:7531116-7531135 MS.gene09583:CDS 45.0%
! TTTTGGACCCACCTTGTTCT+TGG - chr5.2:7531133-7531152 MS.gene09583:CDS 45.0%
!! AACGACACGTATTTTGGACC+GGG - chr5.2:7531239-7531258 MS.gene09583:CDS 45.0%
!! CCGGATTTGTTTAGGCCTTT+TGG - chr5.2:7531291-7531310 MS.gene09583:intron 45.0%
!! GTGATGGTTCTGTTGGTGAT+TGG - chr5.2:7531535-7531554 MS.gene09583:CDS 45.0%
!! GTTTTTAAGCTCGAGGTACG+TGG - chr5.2:7531186-7531205 MS.gene09583:CDS 45.0%
!! TTGGTAGCGTACCGTTGATT+AGG + chr5.2:7530600-7530619 None:intergenic 45.0%
!!! AGGCCATGTTTTGACACTGT+AGG + chr5.2:7531097-7531116 None:intergenic 45.0%
AATGGGGTCACCAAGCATGT+CGG + chr5.2:7530224-7530243 None:intergenic 50.0%
ACGGCGTCAGAAGGAGTTAA+CGG + chr5.2:7530964-7530983 None:intergenic 50.0%
ACGGGGTTGACGAGAATTGA+CGG + chr5.2:7530898-7530917 None:intergenic 50.0%
ACTGTAGGACCCACTTGGTA+CGG + chr5.2:7531082-7531101 None:intergenic 50.0%
AGGCCCAAAGAAGGTGAAGA+TGG - chr5.2:7531344-7531363 MS.gene09583:intron 50.0%
CTCACCTTCTTTCCTCATGC+TGG - chr5.2:7530258-7530277 MS.gene09583:CDS 50.0%
GATTGGACCAAGTCTATGCC+AGG - chr5.2:7531552-7531571 MS.gene09583:CDS 50.0%
GCATGAGGAAAGAAGGTGAG+TGG + chr5.2:7530258-7530277 None:intergenic 50.0%
GGCTATGGAATGTGAGTGTG+GGG - chr5.2:7531398-7531417 MS.gene09583:intron 50.0%
GGTGCAGGAGAATGGGAATA+GGG - chr5.2:7530737-7530756 MS.gene09583:CDS 50.0%
TCTCTCTTCACCGACATGCT+TGG - chr5.2:7530211-7530230 MS.gene09583:CDS 50.0%
TGAGGAAAGAAGGTGAGTGG+CGG + chr5.2:7530255-7530274 None:intergenic 50.0%
TGGTGCAGGAGAATGGGAAT+AGG - chr5.2:7530736-7530755 MS.gene09583:CDS 50.0%
TTGACACTGTAGGACCCACT+TGG + chr5.2:7531087-7531106 None:intergenic 50.0%
!! CGTCGGTTCCGGATTTGTTT+AGG - chr5.2:7531283-7531302 MS.gene09583:intron 50.0%
!! GCCAGGGATCTCCATTTTTG+TGG - chr5.2:7531569-7531588 MS.gene09583:CDS 50.0%
AAACATGGCCTGGCCCAGAT+AGG - chr5.2:7531106-7531125 MS.gene09583:CDS 55.0%
ACCGACGGTACCTTCAACCA+CGG + chr5.2:7531270-7531289 None:intergenic 55.0%
GGAATGTGAGTGTGGGGTTG+TGG - chr5.2:7531404-7531423 MS.gene09583:intron 55.0%
GGAGATCCCTGGCATAGACT+TGG + chr5.2:7531562-7531581 None:intergenic 55.0%
TTGTATGGGCTTGGGGGTGA+AGG - chr5.2:7531324-7531343 MS.gene09583:intron 55.0%
! GCTTGGTGACCCCATTTGCA+GGG - chr5.2:7530228-7530247 MS.gene09583:CDS 55.0%
! TGCTTGGTGACCCCATTTGC+AGG - chr5.2:7530227-7530246 MS.gene09583:CDS 55.0%
!! GTTGAAGGTACCGTCGGTTC+CGG - chr5.2:7531272-7531291 MS.gene09583:intron 55.0%
CCTTCAACCACGGCAAAGCC+CGG + chr5.2:7531260-7531279 None:intergenic 60.0%
GTGTGGGGTTGTGGCTACTG+AGG - chr5.2:7531413-7531432 MS.gene09583:intron 60.0%
TGGGGGTGAAGGCCCAAAGA+AGG - chr5.2:7531335-7531354 MS.gene09583:intron 60.0%
! TTTTGGACCGGGCTTTGCCG+TGG - chr5.2:7531250-7531269 MS.gene09583:intron 60.0%
!! AGTGGCGGACCCTGCAAATG+GGG + chr5.2:7530240-7530259 None:intergenic 60.0%
!! GAGTGGCGGACCCTGCAAAT+GGG + chr5.2:7530241-7530260 None:intergenic 60.0%
!! GCCGTGGTTGAAGGTACCGT+CGG - chr5.2:7531266-7531285 MS.gene09583:intron 60.0%
!! TGAGTGGCGGACCCTGCAAA+TGG + chr5.2:7530242-7530261 None:intergenic 60.0%
CCGGGCTTTGCCGTGGTTGA+AGG - chr5.2:7531257-7531276 MS.gene09583:intron 65.0%
GCGCGTCGCGTGTCAAGCGC+GGG - chr5.2:7531208-7531227 MS.gene09583:CDS 75.0%
GGCGCGTCGCGTGTCAAGCG+CGG - chr5.2:7531207-7531226 MS.gene09583:CDS 75.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 7530097 7531608 7530097 ID=MS.gene09583
chr5.2 mRNA 7530097 7531608 7530097 ID=MS.gene09583.t1;Parent=MS.gene09583
chr5.2 exon 7531426 7531608 7531426 ID=MS.gene09583.t1.exon1;Parent=MS.gene09583.t1
chr5.2 CDS 7531426 7531608 7531426 ID=cds.MS.gene09583.t1;Parent=MS.gene09583.t1
chr5.2 exon 7531098 7531261 7531098 ID=MS.gene09583.t1.exon2;Parent=MS.gene09583.t1
chr5.2 CDS 7531098 7531261 7531098 ID=cds.MS.gene09583.t1;Parent=MS.gene09583.t1
chr5.2 exon 7530097 7530961 7530097 ID=MS.gene09583.t1.exon3;Parent=MS.gene09583.t1
chr5.2 CDS 7530097 7530961 7530097 ID=cds.MS.gene09583.t1;Parent=MS.gene09583.t1
Gene Sequence

>MS.gene09583

ATGAGAGTTGATGAATCCGTTAGTGTAATTGTTCGAGAGTTCGAAGTTAATAAAGACAAAGAAAGAGTAGAAGCAGTTGAAAGGACATGTGAAGTTGGACCTAGTGACCAACTTTCTCTCTTCACCGACATGCTTGGTGACCCCATTTGCAGGGTCCGCCACTCACCTTCTTTCCTCATGCTGGTATATATTCACAAAAATCATTCACTAGCTTTCACTATTCTATTACTTACATTCTTCTCTCTGTTATGTTTGCGCACTTTTCTTAATCTGTGTGAATTGGTCCGCAGTTATTTTGTTTTATAATTGACCAGAGATATGATATTCTATGTTCTTGGTTTCAACAGGTGGCTGAAATTGATAAAGAAATAGTTGGAATGATAAGAGGATGCATAAAAACAGTTACATGCGGTAAAAACGTCTCAAGATCGAAAACATCTCTCACTAAACACATCCCAGTTTACACCAAACTCGCTTACATTTTAGGCCTTCGTGTTTCTCCTAATCAACGGTACGCTACCAACATATCAAATGTTTATGCAACTACTATTTAAGTTGTATTTACGCGACAATGTTAATATTATTCAATATAATGTGTTTATTAATATTAACTAGTGTATCTTGTTGTACTGTTTTTGATGGTGCAGGAGAATGGGAATAGGGTTGAAGCTAGTGAAAAAAATGGAGGCATGGTTTAAAGATAACGGCGCTGAATATTCATATATGGCAACGGAAACCGAAAATTTAGCATCCGTTAAACTCTTCACTGAAAAATGCGGTTATTCAAAGTTCCGTACACCGTCAATTCTCGTCAACCCCGTTTATGCTCACAGAACAAAAATTTCAAGAAAAGTCACCATCATTCCGTTAACTCCTTCTGACGCCGTTATATTCTACCGTAACCGTTTCTCTACCGTAGAGTTTTTCCCTAATGACATTGACGCTGTTCTTAATAACAAACTTAATCTAGGTACTTTTCTTGCCGTACCAAGTGGGTCCTACAGTGTCAAAACATGGCCTGGCCCAGATAGGTTTCTTTTGGACCCACCTTGTTCTTGGGCTATTTTAAGTGTTTGGAATTCTAAAGAGGTTTTTAAGCTCGAGGTACGTGGCGCGTCGCGTGTCAAGCGCGGGCTTGCTAAAACGACACGTATTTTGGACCGGGCTTTGCCGTGGTTGAAGGTACCGTCGGTTCCGGATTTGTTTAGGCCTTTTGGGTTTCATTTTTTGTATGGGCTTGGGGGTGAAGGCCCAAAGAAGGTGAAGATGGTTAAGGCCCTTTGTGGGTTTGCGCATAATATGGCTATGGAATGTGAGTGTGGGGTTGTGGCTACTGAGGTTGCTTCATGTGAACCATTGAGGTTTGGTATACCTCATTGGAAAATGTTATCTTGTGCTAATGATTTATGGTGTATTAAGAGGCTTGTTGATGATTATAGTGATGGTTCTGTTGGTGATTGGACCAAGTCTATGCCAGGGATCTCCATTTTTGTGGATCCTAGAGAGATTTAA
Protein sequence

>MS.gene09583.t1

MRVDESVSVIVREFEVNKDKERVEAVERTCEVGPSDQLSLFTDMLGDPICRVRHSPSFLMLVAEIDKEIVGMIRGCIKTVTCGKNVSRSKTSLTKHIPVYTKLAYILGLRVSPNQRRMGIGLKLVKKMEAWFKDNGAEYSYMATETENLASVKLFTEKCGYSKFRTPSILVNPVYAHRTKISRKVTIIPLTPSDAVIFYRNRFSTVEFFPNDIDAVLNNKLNLGTFLAVPSGSYSVKTWPGPDRFLLDPPCSWAILSVWNSKEVFKLEVRGASRVKRGLAKTTRILDRALPWLKVPSVPDLFRPFGFHFLYGLGGEGPKKVKMVKALCGFAHNMAMECECGVVATEVASCEPLRFGIPHWKMLSCANDLWCIKRLVDDYSDGSVGDWTKSMPGISIFVDPREI