Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44473.t1 | XP_013457495.1 | 97.1 | 411 | 12 | 0 | 1 | 411 | 1 | 411 | 1.30E-236 | 828.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44473.t1 | O64815 | 70.1 | 415 | 112 | 4 | 5 | 411 | 3 | 413 | 1.0e-168 | 594.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44473.t1 | A0A072UQ97 | 97.1 | 411 | 12 | 0 | 1 | 411 | 1 | 411 | 9.5e-237 | 828.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene44473.t1 | TR | GNAT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene09583 | MS.gene44473 | PPI |
| MS.gene43555 | MS.gene44473 | PPI |
| MS.gene015242 | MS.gene44473 | PPI |
| MS.gene44473 | MS.gene43555 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44473.t1 | MTR_4g095700 | 97.080 | 411 | 12 | 0 | 1 | 411 | 1 | 411 | 0.0 | 826 |
| MS.gene44473.t1 | MTR_5g015810 | 71.499 | 407 | 106 | 5 | 5 | 411 | 7 | 403 | 0.0 | 610 |
| MS.gene44473.t1 | MTR_5g015810 | 71.345 | 342 | 88 | 5 | 70 | 411 | 1 | 332 | 0.0 | 513 |
| MS.gene44473.t1 | MTR_5g015810 | 72.664 | 289 | 75 | 3 | 122 | 410 | 1 | 285 | 2.81e-157 | 445 |
| MS.gene44473.t1 | MTR_4g007130 | 47.494 | 419 | 182 | 9 | 3 | 411 | 19 | 409 | 1.10e-124 | 367 |
| MS.gene44473.t1 | MTR_3g465010 | 48.995 | 398 | 172 | 7 | 17 | 410 | 17 | 387 | 2.39e-120 | 355 |
| MS.gene44473.t1 | MTR_4g122030 | 32.212 | 416 | 195 | 14 | 7 | 411 | 11 | 350 | 9.43e-54 | 182 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44473.t1 | AT2G23060 | 70.120 | 415 | 112 | 4 | 5 | 411 | 3 | 413 | 0.0 | 594 |
| MS.gene44473.t1 | AT4G37580 | 70.936 | 406 | 109 | 3 | 9 | 411 | 4 | 403 | 0.0 | 573 |
| MS.gene44473.t1 | AT4G37580 | 71.387 | 346 | 93 | 2 | 66 | 411 | 7 | 346 | 1.21e-174 | 491 |
| MS.gene44473.t1 | AT5G67430 | 62.315 | 406 | 127 | 9 | 6 | 411 | 7 | 386 | 1.92e-172 | 487 |
| MS.gene44473.t1 | AT2G23060 | 73.214 | 280 | 74 | 1 | 132 | 411 | 1 | 279 | 1.58e-152 | 432 |
| MS.gene44473.t1 | AT5G67430 | 62.757 | 341 | 106 | 8 | 70 | 410 | 1 | 320 | 4.06e-144 | 413 |
| MS.gene44473.t1 | AT2G30090 | 41.951 | 410 | 191 | 7 | 9 | 410 | 15 | 385 | 7.59e-99 | 300 |
Find 85 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTCGTTTGGTGTGAGTTTA+AGG | 0.156297 | 8.1:+25635045 | None:intergenic |
| CATAATCTTGCTATGGAAAA+TGG | 0.159585 | 8.1:-25634603 | MS.gene44473:CDS |
| ACACTTTCTCTATCTTTATT+AGG | 0.193995 | 8.1:+25635689 | None:intergenic |
| ATTCCCATTCTTCTATGATT+TGG | 0.243356 | 8.1:+25635272 | None:intergenic |
| GTTCCGAGAGACGGAAAATA+TGG | 0.259285 | 8.1:-25634921 | MS.gene44473:CDS |
| ACAGGGACATGATTGGAATT+TGG | 0.275130 | 8.1:+25635335 | None:intergenic |
| TGTGGTGTATTAAGAGATTA+GGG | 0.277467 | 8.1:-25634491 | MS.gene44473:CDS |
| TTCACCATCTTCAACACTTC+TGG | 0.289161 | 8.1:+25634645 | None:intergenic |
| GAGTTACGGACTCTGCAAAT+AGG | 0.309584 | 8.1:+25635593 | None:intergenic |
| TTGTGGTGTATTAAGAGATT+AGG | 0.337855 | 8.1:-25634492 | MS.gene44473:CDS |
| GTGTTTACCCTCGAAGTAAA+AGG | 0.339022 | 8.1:-25634807 | MS.gene44473:CDS |
| TTTGGATTTCATCTAATGTA+TGG | 0.345767 | 8.1:-25634684 | MS.gene44473:CDS |
| CGTGGGCTTTAGTAAGTGTT+TGG | 0.349245 | 8.1:-25634842 | MS.gene44473:CDS |
| GAACAATGGTTTCGTGAAAA+TGG | 0.352645 | 8.1:-25635224 | MS.gene44473:CDS |
| TAGGCTAGTTTAGTGAAAAC+AGG | 0.378761 | 8.1:+25635317 | None:intergenic |
| TTGAGACGGTGTTTGAAAAC+GGG | 0.405778 | 8.1:+25635092 | None:intergenic |
| AAACTTAATTAAAACTCTCT+AGG | 0.411336 | 8.1:+25634399 | None:intergenic |
| ATAATCTTGCTATGGAAAAT+GGG | 0.419756 | 8.1:-25634602 | MS.gene44473:CDS |
| AATGGGAATAGGACTAAAAC+TGG | 0.424053 | 8.1:-25635258 | MS.gene44473:CDS |
| TATAGCAATTCAGCGTCGTT+TGG | 0.426241 | 8.1:+25635032 | None:intergenic |
| AATCATAGAAGAATGGGAAT+AGG | 0.430636 | 8.1:-25635269 | MS.gene44473:CDS |
| TGTCTTGTGAAGAAGATTTG+TGG | 0.432512 | 8.1:-25634509 | MS.gene44473:CDS |
| AGTTACGGACTCTGCAAATA+GGG | 0.441613 | 8.1:+25635594 | None:intergenic |
| GTCTCTCGGAACGGCTAAGA+AGG | 0.443084 | 8.1:+25634932 | None:intergenic |
| GTGATGGTTCTGTTGGTGAT+TGG | 0.444763 | 8.1:-25634458 | MS.gene44473:CDS |
| ATGGGGCCGGATCAAATAAC+TGG | 0.446614 | 8.1:-25634902 | MS.gene44473:CDS |
| TTCTCCAAATCATAGAAGAA+TGG | 0.447810 | 8.1:-25635276 | MS.gene44473:CDS |
| TCTCCAAATCATAGAAGAAT+GGG | 0.453132 | 8.1:-25635275 | MS.gene44473:CDS |
| TTTCATCTAATGTATGGAAT+TGG | 0.454495 | 8.1:-25634678 | MS.gene44473:CDS |
| AGTGAAAACAGGGACATGAT+TGG | 0.457232 | 8.1:+25635328 | None:intergenic |
| CTTACTAAAGCCCACGAACT+TGG | 0.458378 | 8.1:+25634849 | None:intergenic |
| GCCGGACCAGTTATTTGATC+CGG | 0.460530 | 8.1:+25634896 | None:intergenic |
| GGAATTTGGTGTTTCTGTGA+TGG | 0.461299 | 8.1:+25635349 | None:intergenic |
| TTTGAGACGGTGTTTGAAAA+CGG | 0.461617 | 8.1:+25635091 | None:intergenic |
| CTTACCAGCATGAGAAAAGT+TGG | 0.464838 | 8.1:+25635569 | None:intergenic |
| TGAGAAAAGTTGGTGAGTTA+CGG | 0.469288 | 8.1:+25635579 | None:intergenic |
| TTCTTAGCCGTTCCGAGAGA+CGG | 0.475720 | 8.1:-25634930 | MS.gene44473:CDS |
| GAGTTTAAGGATTGTTACTT+TGG | 0.478195 | 8.1:+25635058 | None:intergenic |
| TTCCGAGAGACGGAAAATAT+GGG | 0.480561 | 8.1:-25634920 | MS.gene44473:CDS |
| GCCGGATCAAATAACTGGTC+CGG | 0.494724 | 8.1:-25634897 | MS.gene44473:CDS |
| CATCTAATGTATGGAATTGG+TGG | 0.508655 | 8.1:-25634675 | MS.gene44473:CDS |
| AACTTAATTAAAACTCTCTA+GGG | 0.509353 | 8.1:+25634400 | None:intergenic |
| GAAGAGGGAAAGTTTACCAC+TGG | 0.510294 | 8.1:+25635634 | None:intergenic |
| TAACAAGGATTGACGGTGTA+CGG | 0.511747 | 8.1:+25635117 | None:intergenic |
| TACATTAGATGAAATCCAAA+CGG | 0.515685 | 8.1:+25634687 | None:intergenic |
| TAATGGACCCACCAAGTTCG+TGG | 0.516534 | 8.1:-25634860 | MS.gene44473:CDS |
| AACTCTTAAGCCTAAAACAT+AGG | 0.527965 | 8.1:+25635298 | None:intergenic |
| ATCTAATGTATGGAATTGGT+GGG | 0.530410 | 8.1:-25634674 | MS.gene44473:CDS |
| GTTTGAAAACGGGGTTAACA+AGG | 0.535510 | 8.1:+25635102 | None:intergenic |
| GATTGGACTAAATCCAAACC+TGG | 0.541245 | 8.1:-25634441 | MS.gene44473:CDS |
| TCCCTCTTCACCGACTTGCA+CGG | 0.552369 | 8.1:-25635620 | MS.gene44473:CDS |
| GATTATAGTGATGGTTCTGT+TGG | 0.554056 | 8.1:-25634465 | MS.gene44473:CDS |
| TTGCTAACACACGTCTCACG+CGG | 0.558176 | 8.1:+25634778 | None:intergenic |
| TTAGGGGAAGATTATAGTGA+TGG | 0.558836 | 8.1:-25634474 | MS.gene44473:CDS |
| ACTAAAGCCCACGAACTTGG+TGG | 0.559265 | 8.1:+25634852 | None:intergenic |
| ATGTATGGAATTGGTGGGGA+AGG | 0.560905 | 8.1:-25634669 | MS.gene44473:CDS |
| AATGGACCCACCAAGTTCGT+GGG | 0.562889 | 8.1:-25634859 | MS.gene44473:CDS |
| AGGACCAGAAGTGTTGAAGA+TGG | 0.565220 | 8.1:-25634649 | MS.gene44473:CDS |
| GAGATAGGCAATGAGACAGT+CGG | 0.571965 | 8.1:-25635437 | MS.gene44473:CDS |
| CACCGTGCAAGTCGGTGAAG+AGG | 0.582711 | 8.1:+25635618 | None:intergenic |
| TGATAGACAAGGCTTTACCT+TGG | 0.583323 | 8.1:-25634743 | MS.gene44473:CDS |
| ACCGTGCAAGTCGGTGAAGA+GGG | 0.587032 | 8.1:+25635619 | None:intergenic |
| CTAAAGCCCACGAACTTGGT+GGG | 0.594144 | 8.1:+25634853 | None:intergenic |
| AGAGACGGAAAATATGGGGC+CGG | 0.595183 | 8.1:-25634915 | MS.gene44473:CDS |
| TGGTGCTGAGTATTCATACA+TGG | 0.597000 | 8.1:-25635204 | MS.gene44473:CDS |
| ACGGGGTTAACAAGGATTGA+CGG | 0.599326 | 8.1:+25635110 | None:intergenic |
| TGCTAACACACGTCTCACGC+GGG | 0.608765 | 8.1:+25634779 | None:intergenic |
| ATATGTGAAGTTGGACCCAG+TGG | 0.635969 | 8.1:-25635650 | MS.gene44473:CDS |
| AACAACTCGCGTGATAGACA+AGG | 0.641023 | 8.1:-25634754 | MS.gene44473:CDS |
| TCTAATGTATGGAATTGGTG+GGG | 0.644769 | 8.1:-25634673 | MS.gene44473:CDS |
| TGAGACGGTGTTTGAAAACG+GGG | 0.645003 | 8.1:+25635093 | None:intergenic |
| AAGAGGGAAAGTTTACCACT+GGG | 0.649201 | 8.1:+25635635 | None:intergenic |
| TCCGAGAGACGGAAAATATG+GGG | 0.649828 | 8.1:-25634919 | MS.gene44473:CDS |
| AAGATGGTGAAAGCTTTGTG+TGG | 0.659803 | 8.1:-25634633 | MS.gene44473:CDS |
| AATAGGGTCACCGTGCAAGT+CGG | 0.663384 | 8.1:+25635610 | None:intergenic |
| CAAGACAAAACCTTCCAATG+AGG | 0.667319 | 8.1:+25634525 | None:intergenic |
| AGGCTAGTTTAGTGAAAACA+GGG | 0.668200 | 8.1:+25635318 | None:intergenic |
| CAGTGGTGGAGAATTTGTAA+CGG | 0.668778 | 8.1:+25635009 | None:intergenic |
| TGAGGAATAGCAAAACGTAA+CGG | 0.672089 | 8.1:+25634543 | None:intergenic |
| GGAAAATGGGTGTAGTGCTG+TGG | 0.676685 | 8.1:-25634589 | MS.gene44473:CDS |
| ATTGGACTAAATCCAAACCT+GGG | 0.691102 | 8.1:-25634440 | MS.gene44473:CDS |
| TGTATCAAAACCGTTACATG+CGG | 0.691594 | 8.1:-25635401 | MS.gene44473:CDS |
| AAAACAGAATCAATGTCACG+AGG | 0.691646 | 8.1:+25634978 | None:intergenic |
| GTGGTGTATTAAGAGATTAG+GGG | 0.708222 | 8.1:-25634490 | MS.gene44473:CDS |
| GAGACAGTCGGAATGATACG+AGG | 0.713167 | 8.1:-25635425 | MS.gene44473:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAAAATAACAAAGTT+AGG | + | chr8.1:25634669-25634688 | None:intergenic | 10.0% |
| !! | TGATACATTATTATAGTATA+TGG | + | chr8.1:25634612-25634631 | None:intergenic | 15.0% |
| !!! | ACTTTGTTATTTTAATTTTC+AGG | - | chr8.1:25634670-25634689 | MS.gene44473:CDS | 15.0% |
| !!! | ATTATTATAGTATATGGTTT+TGG | + | chr8.1:25634606-25634625 | None:intergenic | 15.0% |
| !! | AAAATAACAAAGTTAGGATT+AGG | + | chr8.1:25634663-25634682 | None:intergenic | 20.0% |
| !! | TTAAAAAACAAACTTACTCT+TGG | - | chr8.1:25635178-25635197 | MS.gene44473:CDS | 20.0% |
| ! | ACACTTTCTCTATCTTTATT+AGG | + | chr8.1:25634449-25634468 | None:intergenic | 25.0% |
| ! | ACTAAAACTGGTAGAAAAAA+TGG | - | chr8.1:25634889-25634908 | MS.gene44473:CDS | 25.0% |
| ! | GTTGAAAAAATATGTGAAGT+TGG | - | chr8.1:25634476-25634495 | MS.gene44473:CDS | 25.0% |
| ! | TACATTAGATGAAATCCAAA+CGG | + | chr8.1:25635451-25635470 | None:intergenic | 25.0% |
| ! | TTTCATCTAATGTATGGAAT+TGG | - | chr8.1:25635457-25635476 | MS.gene44473:intron | 25.0% |
| ! | TTTGGATTTCATCTAATGTA+TGG | - | chr8.1:25635451-25635470 | MS.gene44473:intron | 25.0% |
| !! | ATAATCTTGCTATGGAAAAT+GGG | - | chr8.1:25635533-25635552 | MS.gene44473:intron | 25.0% |
| AACTCTTAAGCCTAAAACAT+AGG | + | chr8.1:25634840-25634859 | None:intergenic | 30.0% | |
| AATCATAGAAGAATGGGAAT+AGG | - | chr8.1:25634866-25634885 | MS.gene44473:CDS | 30.0% | |
| ATCTAATGTATGGAATTGGT+GGG | - | chr8.1:25635461-25635480 | MS.gene44473:intron | 30.0% | |
| ATTCCCATTCTTCTATGATT+TGG | + | chr8.1:25634866-25634885 | None:intergenic | 30.0% | |
| CCAAACGGTTTGAAAAAATT+CGG | + | chr8.1:25635436-25635455 | None:intergenic | 30.0% | |
| TCTCCAAATCATAGAAGAAT+GGG | - | chr8.1:25634860-25634879 | MS.gene44473:CDS | 30.0% | |
| TGGTAGAAAAAATGGAACAA+TGG | - | chr8.1:25634897-25634916 | MS.gene44473:CDS | 30.0% | |
| TGTGGTGTATTAAGAGATTA+GGG | - | chr8.1:25635644-25635663 | MS.gene44473:CDS | 30.0% | |
| TTCTCCAAATCATAGAAGAA+TGG | - | chr8.1:25634859-25634878 | MS.gene44473:CDS | 30.0% | |
| TTGAAAAAATTCGGAATCGA+AGG | + | chr8.1:25635427-25635446 | None:intergenic | 30.0% | |
| TTGTGGTGTATTAAGAGATT+AGG | - | chr8.1:25635643-25635662 | MS.gene44473:CDS | 30.0% | |
| ! | CATAATCTTGCTATGGAAAA+TGG | - | chr8.1:25635532-25635551 | MS.gene44473:intron | 30.0% |
| ! | GAGTTTAAGGATTGTTACTT+TGG | + | chr8.1:25635080-25635099 | None:intergenic | 30.0% |
| ! | TTTTGCTCATAATCTTGCTA+TGG | - | chr8.1:25635525-25635544 | MS.gene44473:intron | 30.0% |
| !! | ACTAAACTAGCCTATGTTTT+AGG | - | chr8.1:25634827-25634846 | MS.gene44473:CDS | 30.0% |
| !! | ATCGAAGGTAATTTTAACCA+AGG | + | chr8.1:25635412-25635431 | None:intergenic | 30.0% |
| !! | TTTTGAGTAACCACATTTGT+CGG | + | chr8.1:25634996-25635015 | None:intergenic | 30.0% |
| AAAACAGAATCAATGTCACG+AGG | + | chr8.1:25635160-25635179 | None:intergenic | 35.0% | |
| AATGGGAATAGGACTAAAAC+TGG | - | chr8.1:25634877-25634896 | MS.gene44473:CDS | 35.0% | |
| ATTGGACTAAATCCAAACCT+GGG | - | chr8.1:25635695-25635714 | MS.gene44473:CDS | 35.0% | |
| CATCTAATGTATGGAATTGG+TGG | - | chr8.1:25635460-25635479 | MS.gene44473:intron | 35.0% | |
| GAACAATGGTTTCGTGAAAA+TGG | - | chr8.1:25634911-25634930 | MS.gene44473:CDS | 35.0% | |
| GTGGTGTATTAAGAGATTAG+GGG | - | chr8.1:25635645-25635664 | MS.gene44473:CDS | 35.0% | |
| TCTAATGTATGGAATTGGTG+GGG | - | chr8.1:25635462-25635481 | MS.gene44473:intron | 35.0% | |
| TGAGGAATAGCAAAACGTAA+CGG | + | chr8.1:25635595-25635614 | None:intergenic | 35.0% | |
| TGGGTCCATTAAAAAGCTTT+CGG | + | chr8.1:25635266-25635285 | None:intergenic | 35.0% | |
| TGTATCAAAACCGTTACATG+CGG | - | chr8.1:25634734-25634753 | MS.gene44473:CDS | 35.0% | |
| TGTCTTGTGAAGAAGATTTG+TGG | - | chr8.1:25635626-25635645 | MS.gene44473:CDS | 35.0% | |
| TTAGGGGAAGATTATAGTGA+TGG | - | chr8.1:25635661-25635680 | MS.gene44473:CDS | 35.0% | |
| ! | AAACTTTTCACCGACAAATG+TGG | - | chr8.1:25634983-25635002 | MS.gene44473:CDS | 35.0% |
| ! | GATTATAGTGATGGTTCTGT+TGG | - | chr8.1:25635670-25635689 | MS.gene44473:CDS | 35.0% |
| ! | TTTGAGACGGTGTTTGAAAA+CGG | + | chr8.1:25635047-25635066 | None:intergenic | 35.0% |
| !! | AGGCTAGTTTAGTGAAAACA+GGG | + | chr8.1:25634820-25634839 | None:intergenic | 35.0% |
| !! | TAGGCTAGTTTAGTGAAAAC+AGG | + | chr8.1:25634821-25634840 | None:intergenic | 35.0% |
| !! | TGAGAAAAGTTGGTGAGTTA+CGG | + | chr8.1:25634559-25634578 | None:intergenic | 35.0% |
| !!! | AATTTTCAGGTAGCAGAGAT+AGG | - | chr8.1:25634683-25634702 | MS.gene44473:CDS | 35.0% |
| !!! | CCGAATTTTTTCAAACCGTT+TGG | - | chr8.1:25635433-25635452 | MS.gene44473:CDS | 35.0% |
| !!! | TACGTTTTGCTATTCCTCAT+TGG | - | chr8.1:25635596-25635615 | MS.gene44473:CDS | 35.0% |
| !!! | TCTGTGATGGTGTTTTTTGT+TGG | + | chr8.1:25634776-25634795 | None:intergenic | 35.0% |
| !!! | TTTTGCTATTCCTCATTGGA+AGG | - | chr8.1:25635600-25635619 | MS.gene44473:CDS | 35.0% |
| AAAAATGGAGAACCCAGGTT+TGG | + | chr8.1:25635710-25635729 | None:intergenic | 40.0% | |
| AAGAGGGAAAGTTTACCACT+GGG | + | chr8.1:25634503-25634522 | None:intergenic | 40.0% | |
| ACAGGGACATGATTGGAATT+TGG | + | chr8.1:25634803-25634822 | None:intergenic | 40.0% | |
| AGTGAAAACAGGGACATGAT+TGG | + | chr8.1:25634810-25634829 | None:intergenic | 40.0% | |
| AGTTACGGACTCTGCAAATA+GGG | + | chr8.1:25634544-25634563 | None:intergenic | 40.0% | |
| CAAGACAAAACCTTCCAATG+AGG | + | chr8.1:25635613-25635632 | None:intergenic | 40.0% | |
| CATTAAAAAGCTTTCGGAGC+CGG | + | chr8.1:25635260-25635279 | None:intergenic | 40.0% | |
| CTTACCAGCATGAGAAAAGT+TGG | + | chr8.1:25634569-25634588 | None:intergenic | 40.0% | |
| GATTGGACTAAATCCAAACC+TGG | - | chr8.1:25635694-25635713 | MS.gene44473:CDS | 40.0% | |
| GTGTTTACCCTCGAAGTAAA+AGG | - | chr8.1:25635328-25635347 | MS.gene44473:CDS | 40.0% | |
| GTTTGAAAACGGGGTTAACA+AGG | + | chr8.1:25635036-25635055 | None:intergenic | 40.0% | |
| TAACAAGGATTGACGGTGTA+CGG | + | chr8.1:25635021-25635040 | None:intergenic | 40.0% | |
| TATAGCAATTCAGCGTCGTT+TGG | + | chr8.1:25635106-25635125 | None:intergenic | 40.0% | |
| TCAACAAAAATGGAGAACCC+AGG | + | chr8.1:25635715-25635734 | None:intergenic | 40.0% | |
| TGATAGACAAGGCTTTACCT+TGG | - | chr8.1:25635392-25635411 | MS.gene44473:CDS | 40.0% | |
| TTCACCATCTTCAACACTTC+TGG | + | chr8.1:25635493-25635512 | None:intergenic | 40.0% | |
| TTCCGAGAGACGGAAAATAT+GGG | - | chr8.1:25635215-25635234 | MS.gene44473:CDS | 40.0% | |
| TTGAGACGGTGTTTGAAAAC+GGG | + | chr8.1:25635046-25635065 | None:intergenic | 40.0% | |
| ! | AAGATGGTGAAAGCTTTGTG+TGG | - | chr8.1:25635502-25635521 | MS.gene44473:intron | 40.0% |
| ! | ATATTTTCCGTCTCTCGGAA+CGG | + | chr8.1:25635215-25635234 | None:intergenic | 40.0% |
| ! | CAGTGGTGGAGAATTTGTAA+CGG | + | chr8.1:25635129-25635148 | None:intergenic | 40.0% |
| ! | TGGTGCTGAGTATTCATACA+TGG | - | chr8.1:25634931-25634950 | MS.gene44473:CDS | 40.0% |
| !! | CTCTCTAGGGTCAACAAAAA+TGG | + | chr8.1:25635725-25635744 | None:intergenic | 40.0% |
| !! | GGAATTTGGTGTTTCTGTGA+TGG | + | chr8.1:25634789-25634808 | None:intergenic | 40.0% |
| !!! | GAGTTTTTTGCCGCATGTAA+CGG | + | chr8.1:25634747-25634766 | None:intergenic | 40.0% |
| !!! | TGGACGATGATGTTTTGAGA+CGG | + | chr8.1:25635060-25635079 | None:intergenic | 40.0% |
| AACAACTCGCGTGATAGACA+AGG | - | chr8.1:25635381-25635400 | MS.gene44473:CDS | 45.0% | |
| ACGAGGAAAAAACTCAGTGG+TGG | + | chr8.1:25635143-25635162 | None:intergenic | 45.0% | |
| ACGGGGTTAACAAGGATTGA+CGG | + | chr8.1:25635028-25635047 | None:intergenic | 45.0% | |
| ATATGTGAAGTTGGACCCAG+TGG | - | chr8.1:25634485-25634504 | MS.gene44473:CDS | 45.0% | |
| ATGTATGGAATTGGTGGGGA+AGG | - | chr8.1:25635466-25635485 | MS.gene44473:intron | 45.0% | |
| CTTACTAAAGCCCACGAACT+TGG | + | chr8.1:25635289-25635308 | None:intergenic | 45.0% | |
| GAAGAGGGAAAGTTTACCAC+TGG | + | chr8.1:25634504-25634523 | None:intergenic | 45.0% | |
| GAGATAGGCAATGAGACAGT+CGG | - | chr8.1:25634698-25634717 | MS.gene44473:CDS | 45.0% | |
| GAGTTACGGACTCTGCAAAT+AGG | + | chr8.1:25634545-25634564 | None:intergenic | 45.0% | |
| GTCACGAGGAAAAAACTCAG+TGG | + | chr8.1:25635146-25635165 | None:intergenic | 45.0% | |
| GTTCCGAGAGACGGAAAATA+TGG | - | chr8.1:25635214-25635233 | MS.gene44473:CDS | 45.0% | |
| TCCGAGAGACGGAAAATATG+GGG | - | chr8.1:25635216-25635235 | MS.gene44473:CDS | 45.0% | |
| TGAGACGGTGTTTGAAAACG+GGG | + | chr8.1:25635045-25635064 | None:intergenic | 45.0% | |
| ! | CGGCTCCGAAAGCTTTTTAA+TGG | - | chr8.1:25635258-25635277 | MS.gene44473:CDS | 45.0% |
| ! | CGTGGGCTTTAGTAAGTGTT+TGG | - | chr8.1:25635293-25635312 | MS.gene44473:CDS | 45.0% |
| ! | CTCACCAACTTTTCTCATGC+TGG | - | chr8.1:25634562-25634581 | MS.gene44473:CDS | 45.0% |
| !! | AGGACCAGAAGTGTTGAAGA+TGG | - | chr8.1:25635486-25635505 | MS.gene44473:intron | 45.0% |
| !! | CGTCGTTTGGTGTGAGTTTA+AGG | + | chr8.1:25635093-25635112 | None:intergenic | 45.0% |
| !! | GTGATGGTTCTGTTGGTGAT+TGG | - | chr8.1:25635677-25635696 | MS.gene44473:CDS | 45.0% |
| AATAGGGTCACCGTGCAAGT+CGG | + | chr8.1:25634528-25634547 | None:intergenic | 50.0% | |
| AATGGACCCACCAAGTTCGT+GGG | - | chr8.1:25635276-25635295 | MS.gene44473:CDS | 50.0% | |
| ACTAAAGCCCACGAACTTGG+TGG | + | chr8.1:25635286-25635305 | None:intergenic | 50.0% | |
| AGAGACGGAAAATATGGGGC+CGG | - | chr8.1:25635220-25635239 | MS.gene44473:CDS | 50.0% | |
| ATGGGGCCGGATCAAATAAC+TGG | - | chr8.1:25635233-25635252 | MS.gene44473:CDS | 50.0% | |
| CTAAAGCCCACGAACTTGGT+GGG | + | chr8.1:25635285-25635304 | None:intergenic | 50.0% | |
| GAGACAGTCGGAATGATACG+AGG | - | chr8.1:25634710-25634729 | MS.gene44473:CDS | 50.0% | |
| GCCGGACCAGTTATTTGATC+CGG | + | chr8.1:25635242-25635261 | None:intergenic | 50.0% | |
| GCCGGATCAAATAACTGGTC+CGG | - | chr8.1:25635238-25635257 | MS.gene44473:CDS | 50.0% | |
| GGAAAATGGGTGTAGTGCTG+TGG | - | chr8.1:25635546-25635565 | MS.gene44473:intron | 50.0% | |
| TTCTTAGCCGTTCCGAGAGA+CGG | - | chr8.1:25635205-25635224 | MS.gene44473:CDS | 50.0% | |
| TTGCTAACACACGTCTCACG+CGG | + | chr8.1:25635360-25635379 | None:intergenic | 50.0% | |
| ! | GCCCCATATTTTCCGTCTCT+CGG | + | chr8.1:25635220-25635239 | None:intergenic | 50.0% |
| ! | TAATGGACCCACCAAGTTCG+TGG | - | chr8.1:25635275-25635294 | MS.gene44473:CDS | 50.0% |
| ACCGTGCAAGTCGGTGAAGA+GGG | + | chr8.1:25634519-25634538 | None:intergenic | 55.0% | |
| GTCTCTCGGAACGGCTAAGA+AGG | + | chr8.1:25635206-25635225 | None:intergenic | 55.0% | |
| TGCTAACACACGTCTCACGC+GGG | + | chr8.1:25635359-25635378 | None:intergenic | 55.0% | |
| ! | GGACGCGCCTTTTACTTCGA+GGG | + | chr8.1:25635338-25635357 | None:intergenic | 55.0% |
| !! | TCCCTCTTCACCGACTTGCA+CGG | - | chr8.1:25634515-25634534 | MS.gene44473:CDS | 55.0% |
| CACCGTGCAAGTCGGTGAAG+AGG | + | chr8.1:25634520-25634539 | None:intergenic | 60.0% | |
| ! | GGGACGCGCCTTTTACTTCG+AGG | + | chr8.1:25635339-25635358 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 25634407 | 25635750 | 25634407 | ID=MS.gene44473 |
| chr8.1 | mRNA | 25634407 | 25635750 | 25634407 | ID=MS.gene44473.t1;Parent=MS.gene44473 |
| chr8.1 | exon | 25635574 | 25635750 | 25635574 | ID=MS.gene44473.t1.exon1;Parent=MS.gene44473.t1 |
| chr8.1 | CDS | 25635574 | 25635750 | 25635574 | ID=cds.MS.gene44473.t1;Parent=MS.gene44473.t1 |
| chr8.1 | exon | 25634407 | 25635465 | 25634407 | ID=MS.gene44473.t1.exon2;Parent=MS.gene44473.t1 |
| chr8.1 | CDS | 25634407 | 25635465 | 25634407 | ID=cds.MS.gene44473.t1;Parent=MS.gene44473.t1 |
| Gene Sequence |
| Protein sequence |
