Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43555.t1 | XP_003611609.2 | 96 | 403 | 16 | 0 | 1 | 403 | 1 | 403 | 2.60E-229 | 804.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43555.t1 | O64815 | 68.5 | 413 | 112 | 4 | 6 | 402 | 2 | 412 | 2.6e-161 | 569.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43555.t1 | G7K3U7 | 96.0 | 403 | 16 | 0 | 1 | 403 | 1 | 403 | 1.9e-229 | 804.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene43555.t1 | TR | GNAT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene43555 | MS.gene44473 | PPI |
| MS.gene015242 | MS.gene43555 | PPI |
| MS.gene44473 | MS.gene43555 | PPI |
| MS.gene09583 | MS.gene43555 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43555.t1 | MTR_5g015810 | 96.030 | 403 | 16 | 0 | 1 | 403 | 1 | 403 | 0.0 | 801 |
| MS.gene43555.t1 | MTR_5g015810 | 96.386 | 332 | 12 | 0 | 72 | 403 | 1 | 332 | 0.0 | 667 |
| MS.gene43555.t1 | MTR_4g095700 | 71.046 | 411 | 109 | 4 | 3 | 403 | 1 | 411 | 0.0 | 608 |
| MS.gene43555.t1 | MTR_5g015810 | 96.853 | 286 | 9 | 0 | 118 | 403 | 1 | 286 | 0.0 | 577 |
| MS.gene43555.t1 | MTR_4g007130 | 47.433 | 409 | 187 | 7 | 5 | 403 | 19 | 409 | 1.23e-124 | 366 |
| MS.gene43555.t1 | MTR_3g465010 | 46.985 | 398 | 189 | 6 | 11 | 403 | 8 | 388 | 6.49e-118 | 348 |
| MS.gene43555.t1 | MTR_4g122030 | 33.907 | 407 | 188 | 14 | 9 | 402 | 11 | 349 | 9.69e-54 | 182 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43555.t1 | AT2G23060 | 68.357 | 414 | 113 | 4 | 6 | 403 | 2 | 413 | 0.0 | 567 |
| MS.gene43555.t1 | AT4G37580 | 67.332 | 401 | 124 | 3 | 10 | 403 | 3 | 403 | 0.0 | 544 |
| MS.gene43555.t1 | AT5G67430 | 60.253 | 395 | 141 | 6 | 9 | 403 | 8 | 386 | 3.39e-167 | 474 |
| MS.gene43555.t1 | AT4G37580 | 68.035 | 341 | 105 | 2 | 67 | 403 | 6 | 346 | 1.74e-165 | 468 |
| MS.gene43555.t1 | AT2G23060 | 70.251 | 279 | 80 | 1 | 128 | 403 | 1 | 279 | 1.24e-143 | 410 |
| MS.gene43555.t1 | AT5G67430 | 61.446 | 332 | 117 | 5 | 72 | 403 | 1 | 321 | 7.95e-142 | 407 |
| MS.gene43555.t1 | AT2G30090 | 41.542 | 402 | 196 | 7 | 11 | 403 | 15 | 386 | 1.09e-93 | 286 |
Find 99 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTAAAACGACACGTATTT+TGG | 0.139903 | 5.3:-8681956 | MS.gene43555:CDS |
| CTGGATTTGTTTAGGCCTTT+TGG | 0.143394 | 5.3:-8681898 | MS.gene43555:CDS |
| TTAACCATCTTCACCTTCTT+TGG | 0.150962 | 5.3:+8681841 | None:intergenic |
| TATCTTGTGCTAATGATTTA+TGG | 0.162688 | 5.3:-8681705 | MS.gene43555:CDS |
| TGGCCCAGATAGGTTTCTTT+TGG | 0.229875 | 5.3:-8682073 | MS.gene43555:CDS |
| GTTGAAGGTACCGTCGGTTC+TGG | 0.254528 | 5.3:-8681917 | MS.gene43555:CDS |
| TTGTGGGTTTGCGCATAATT+TGG | 0.260941 | 5.3:-8681812 | MS.gene43555:CDS |
| TGCTTGGTGACCCCATTTGC+AGG | 0.320702 | 5.3:-8682957 | MS.gene43555:CDS |
| TAACCATCTTCACCTTCTTT+GGG | 0.322009 | 5.3:+8681842 | None:intergenic |
| GCCTAAAATGTAAGCGAGTT+TGG | 0.325207 | 5.3:+8682622 | None:intergenic |
| AGAACAGCGTCAATGTCATT+AGG | 0.331188 | 5.3:+8682165 | None:intergenic |
| CTTAATAACAAACTTAATCT+AGG | 0.336122 | 5.3:-8682144 | MS.gene43555:CDS |
| TAAGCGAGTTTGGTGTAAAC+TGG | 0.336993 | 5.3:+8682632 | None:intergenic |
| CGTCGGTTCTGGATTTGTTT+AGG | 0.337667 | 5.3:-8681906 | MS.gene43555:CDS |
| GGAATGTGGGTGTGGGGTTG+TGG | 0.340015 | 5.3:-8681785 | MS.gene43555:CDS |
| TTTGGACCCACCTTGTTCTT+GGG | 0.345593 | 5.3:-8682055 | MS.gene43555:CDS |
| TGGCTATGGAATGTGGGTGT+GGG | 0.346396 | 5.3:-8681792 | MS.gene43555:CDS |
| TTGGCTATGGAATGTGGGTG+TGG | 0.357803 | 5.3:-8681793 | MS.gene43555:CDS |
| TTGGTAGCATACCGTTGATT+AGG | 0.360933 | 5.3:+8682587 | None:intergenic |
| CGGCGCTGAATATTCATATA+TGG | 0.362736 | 5.3:-8682388 | MS.gene43555:CDS |
| GGGTCCAAAAGAAACCTATC+TGG | 0.369698 | 5.3:+8682069 | None:intergenic |
| ATGATTTATGGTGTATTAAG+AGG | 0.386924 | 5.3:-8681693 | MS.gene43555:CDS |
| TTTGTTCTGTGAGCATAAAC+GGG | 0.400112 | 5.3:+8682276 | None:intergenic |
| CCGGGCTTTGCCGTGGTTGA+AGG | 0.401375 | 5.3:-8681932 | MS.gene43555:CDS |
| TGAGGTTTGGTATACCTCAT+TGG | 0.402328 | 5.3:-8681735 | MS.gene43555:CDS |
| TGGTGCAGGAGAATGGGAAT+AGG | 0.414994 | 5.3:-8682453 | MS.gene43555:intron |
| GAACAGCGTCAATGTCATTA+GGG | 0.415763 | 5.3:+8682166 | None:intergenic |
| TGAGTGGCGGACCCTGCAAA+TGG | 0.420570 | 5.3:+8682945 | None:intergenic |
| GGCGCGTCGCGTGTCAAGCG+CGG | 0.428563 | 5.3:-8681982 | MS.gene43555:CDS |
| AAGATGGTTAAGGCCCTTTG+TGG | 0.430907 | 5.3:-8681829 | MS.gene43555:CDS |
| GCGCGTCGCGTGTCAAGCGC+GGG | 0.431919 | 5.3:-8681981 | MS.gene43555:CDS |
| GAGTGGCGGACCCTGCAAAT+GGG | 0.439578 | 5.3:+8682946 | None:intergenic |
| CTCACCTTCTTTCCTCATGC+TGG | 0.441437 | 5.3:-8682926 | MS.gene43555:intron |
| GTGATGGTTCTGTTGGTGAT+TGG | 0.447246 | 5.3:-8681654 | MS.gene43555:CDS |
| GGCTATGGAATGTGGGTGTG+GGG | 0.449265 | 5.3:-8681791 | MS.gene43555:CDS |
| GAAATAGTTGGAATGATAAG+AGG | 0.455218 | 5.3:-8682722 | MS.gene43555:CDS |
| GGTGCAGGAGAATGGGAATA+GGG | 0.455976 | 5.3:-8682452 | MS.gene43555:intron |
| GAAATTGATAAAGAAATAGT+TGG | 0.468243 | 5.3:-8682734 | MS.gene43555:CDS |
| TGACGAGAATTGACGGTGTA+CGG | 0.468550 | 5.3:+8682301 | None:intergenic |
| TCATGTGAACCATTGAGGTT+TGG | 0.476876 | 5.3:-8681748 | MS.gene43555:CDS |
| TCTCTCTTCACCGACATGCT+TGG | 0.485318 | 5.3:-8682973 | MS.gene43555:CDS |
| TACAGTGTCAAAACATGGCC+TGG | 0.491753 | 5.3:-8682093 | MS.gene43555:CDS |
| AGATGGTTAAGGCCCTTTGT+GGG | 0.493646 | 5.3:-8681828 | MS.gene43555:CDS |
| ATACTTGCAATTATGAGAGT+TGG | 0.495244 | 5.3:-8683099 | None:intergenic |
| CATAATTTGGCTATGGAATG+TGG | 0.501628 | 5.3:-8681799 | MS.gene43555:CDS |
| AAGTGTTTGGAATTCTAAAG+AGG | 0.505817 | 5.3:-8682025 | MS.gene43555:CDS |
| CTTGTTGATGATTATAGTGA+TGG | 0.506465 | 5.3:-8681670 | MS.gene43555:CDS |
| GATTGGACCAAGTCTATGCC+AGG | 0.509333 | 5.3:-8681637 | MS.gene43555:CDS |
| AAAGAAGGTGAAGATGGTTA+AGG | 0.518056 | 5.3:-8681839 | MS.gene43555:CDS |
| CCTTCAACCACGGCAAAGCC+CGG | 0.518891 | 5.3:+8681932 | None:intergenic |
| ACAACTTCTTAAATCTCTCT+AGG | 0.519282 | 5.3:+8681595 | None:intergenic |
| TTGCTTCATGTGAACCATTG+AGG | 0.519399 | 5.3:-8681753 | MS.gene43555:CDS |
| GATTATAGTGATGGTTCTGT+TGG | 0.524315 | 5.3:-8681661 | MS.gene43555:CDS |
| ACGGCGTCAGAAGGAGTTAA+CGG | 0.524819 | 5.3:+8682228 | None:intergenic |
| TATACCAGCATGAGGAAAGA+AGG | 0.530072 | 5.3:+8682922 | None:intergenic |
| AAACATGGCCTGGCCCAGAT+AGG | 0.535009 | 5.3:-8682083 | MS.gene43555:CDS |
| TAGAATATAACGGCGTCAGA+AGG | 0.539306 | 5.3:+8682219 | None:intergenic |
| AAAAGAAACCTATCTGGGCC+AGG | 0.540432 | 5.3:+8682075 | None:intergenic |
| GTTTGCGCATAATTTGGCTA+TGG | 0.547310 | 5.3:-8681806 | MS.gene43555:CDS |
| GCTTGGTGACCCCATTTGCA+GGG | 0.548286 | 5.3:-8682956 | MS.gene43555:CDS |
| GTTGAAAGGACATGTGAAGT+TGG | 0.549405 | 5.3:-8683012 | MS.gene43555:CDS |
| AATTATGCGCAAACCCACAA+AGG | 0.552012 | 5.3:+8681815 | None:intergenic |
| AAGAGAGAAAGTTGGTCACT+AGG | 0.553217 | 5.3:+8682988 | None:intergenic |
| AAAGAGTAGAAGCAGTTGAA+AGG | 0.557149 | 5.3:-8683026 | MS.gene43555:CDS |
| AGAAGGAGTTAACGGAATGA+TGG | 0.559153 | 5.3:+8682236 | None:intergenic |
| GGAGATCCCTGGCATAGACT+TGG | 0.559706 | 5.3:+8681630 | None:intergenic |
| TGAGGTATACCAAACCTCAA+TGG | 0.563011 | 5.3:+8681739 | None:intergenic |
| ACGGGGTTGACGAGAATTGA+CGG | 0.566648 | 5.3:+8682294 | None:intergenic |
| AAAACTCTACGGTAGAGAAA+CGG | 0.566914 | 5.3:+8682190 | None:intergenic |
| GTGTGGGGTTGTGGCTACTG+AGG | 0.570076 | 5.3:-8681776 | MS.gene43555:CDS |
| GCCGTGGTTGAAGGTACCGT+CGG | 0.570164 | 5.3:-8681923 | MS.gene43555:CDS |
| ATTATGCGCAAACCCACAAA+GGG | 0.571069 | 5.3:+8681816 | None:intergenic |
| ACTGTAGGACCCACTTGGTA+CGG | 0.571473 | 5.3:+8682110 | None:intergenic |
| ACCGACGGTACCTTCAACCA+CGG | 0.572799 | 5.3:+8681922 | None:intergenic |
| TTGACACTGTAGGACCCACT+TGG | 0.573131 | 5.3:+8682105 | None:intergenic |
| AGTGGCGGACCCTGCAAATG+GGG | 0.573181 | 5.3:+8682947 | None:intergenic |
| TGAATATTCATATATGGCAA+CGG | 0.574189 | 5.3:-8682382 | MS.gene43555:CDS |
| TTCGTGTTTCTCCTAATCAA+CGG | 0.574231 | 5.3:-8682598 | MS.gene43555:intron |
| GAGGCATGGTTTAAAGATAA+CGG | 0.582283 | 5.3:-8682408 | MS.gene43555:CDS |
| CTACGGTAGAGAAACGGTTA+CGG | 0.585607 | 5.3:+8682196 | None:intergenic |
| AGGCCCAAAGAAGGTGAAGA+TGG | 0.590583 | 5.3:-8681845 | MS.gene43555:CDS |
| GGTCCAAAAGAAACCTATCT+GGG | 0.592928 | 5.3:+8682070 | None:intergenic |
| TGTCGGTGAAGAGAGAAAGT+TGG | 0.598088 | 5.3:+8682980 | None:intergenic |
| CTCTCGAACAATCACACTAA+CGG | 0.599043 | 5.3:+8683071 | None:intergenic |
| TGTGAATATATACCAGCATG+AGG | 0.601698 | 5.3:+8682914 | None:intergenic |
| ACGGTTACGGTAGAATATAA+CGG | 0.610597 | 5.3:+8682209 | None:intergenic |
| CTTAAAATAGCCCAAGAACA+AGG | 0.618666 | 5.3:+8682045 | None:intergenic |
| ATAATTTGGCTATGGAATGT+GGG | 0.630129 | 5.3:-8681798 | MS.gene43555:CDS |
| AAATAGCCCAAGAACAAGGT+GGG | 0.635584 | 5.3:+8682049 | None:intergenic |
| GCATGAGGAAAGAAGGTGAG+TGG | 0.642413 | 5.3:+8682929 | None:intergenic |
| GGTCCTACAGTGTCAAAACA+TGG | 0.647080 | 5.3:-8682098 | MS.gene43555:CDS |
| CTAAACAAATCCAGAACCGA+CGG | 0.657826 | 5.3:+8681907 | None:intergenic |
| AATGGGGTCACCAAGCATGT+CGG | 0.667448 | 5.3:+8682963 | None:intergenic |
| AAAATAGCCCAAGAACAAGG+TGG | 0.667856 | 5.3:+8682048 | None:intergenic |
| TGAGGAAAGAAGGTGAGTGG+CGG | 0.676708 | 5.3:+8682932 | None:intergenic |
| ATTGGACCAAGTCTATGCCA+GGG | 0.683595 | 5.3:-8681636 | MS.gene43555:CDS |
| TTGTTCTGTGAGCATAAACG+GGG | 0.686756 | 5.3:+8682277 | None:intergenic |
| AAGCGAGTTTGGTGTAAACT+GGG | 0.687492 | 5.3:+8682633 | None:intergenic |
| GTTGATTAGGAGAAACACGA+AGG | 0.743361 | 5.3:+8682600 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATAAAACAAAATAACTG+CGG | + | chr5.3:8681890-8681909 | None:intergenic | 15.0% |
| !! | CTTAATAACAAACTTAATCT+AGG | - | chr5.3:8682546-8682565 | MS.gene43555:intron | 20.0% |
| !! | GAAATTGATAAAGAAATAGT+TGG | - | chr5.3:8681956-8681975 | MS.gene43555:CDS | 20.0% |
| ! | AACATAGAATATCATATCTC+TGG | + | chr5.3:8681916-8681935 | None:intergenic | 25.0% |
| ! | ATGATTTATGGTGTATTAAG+AGG | - | chr5.3:8682997-8683016 | MS.gene43555:CDS | 25.0% |
| ! | GATATGATATTCTATGTTCT+TGG | - | chr5.3:8681918-8681937 | MS.gene43555:CDS | 25.0% |
| ! | TACAAAAAATGAAACCCAAA+AGG | + | chr5.3:8682810-8682829 | None:intergenic | 25.0% |
| ! | TATCTTGTGCTAATGATTTA+TGG | - | chr5.3:8682985-8683004 | MS.gene43555:CDS | 25.0% |
| ! | TGAATATTCATATATGGCAA+CGG | - | chr5.3:8682308-8682327 | MS.gene43555:CDS | 25.0% |
| ! | TGCATAAACATTTGATATGT+TGG | + | chr5.3:8682125-8682144 | None:intergenic | 25.0% |
| !! | TTTTCTTAATCTGTGTGAAT+TGG | - | chr5.3:8681863-8681882 | MS.gene43555:CDS | 25.0% |
| !!! | TTGGGTTTCATTTTTTGTAT+GGG | - | chr5.3:8682811-8682830 | MS.gene43555:intron | 25.0% |
| !!! | TTTAACGGATGCTAAATTTT+CGG | + | chr5.3:8682337-8682356 | None:intergenic | 25.0% |
| !!! | TTTGGGTTTCATTTTTTGTA+TGG | - | chr5.3:8682810-8682829 | MS.gene43555:intron | 25.0% |
| !!! | TTTTTCAGTGAAGAGTTTAA+CGG | + | chr5.3:8682352-8682371 | None:intergenic | 25.0% |
| AAACTCTTCACTGAAAAATG+CGG | - | chr5.3:8682354-8682373 | MS.gene43555:CDS | 30.0% | |
| ATAATTTGGCTATGGAATGT+GGG | - | chr5.3:8682892-8682911 | MS.gene43555:intron | 30.0% | |
| GAAATAGTTGGAATGATAAG+AGG | - | chr5.3:8681968-8681987 | MS.gene43555:CDS | 30.0% | |
| GTTGAAGCTAGTGAAAAAAA+TGG | - | chr5.3:8682260-8682279 | MS.gene43555:CDS | 30.0% | |
| ! | AAGTGTTTGGAATTCTAAAG+AGG | - | chr5.3:8682665-8682684 | MS.gene43555:CDS | 30.0% |
| ! | CAAGATAACATTTTCCAATG+AGG | + | chr5.3:8682972-8682991 | None:intergenic | 30.0% |
| ! | TTTTGTTCTGTGAGCATAAA+CGG | + | chr5.3:8682418-8682437 | None:intergenic | 30.0% |
| !! | CTTGTTGATGATTATAGTGA+TGG | - | chr5.3:8683020-8683039 | MS.gene43555:CDS | 30.0% |
| !!! | TCTTGTTGTACTGTTTTTGA+TGG | - | chr5.3:8682217-8682236 | MS.gene43555:CDS | 30.0% |
| !!! | TTCATTTTTTGTATGGGCTT+GGG | - | chr5.3:8682817-8682836 | MS.gene43555:intron | 30.0% |
| !!! | TTTCATTTTTTGTATGGGCT+TGG | - | chr5.3:8682816-8682835 | MS.gene43555:intron | 30.0% |
| AAAACTCTACGGTAGAGAAA+CGG | + | chr5.3:8682503-8682522 | None:intergenic | 35.0% | |
| AAAGAAGGTGAAGATGGTTA+AGG | - | chr5.3:8682851-8682870 | MS.gene43555:intron | 35.0% | |
| AAAGAGTAGAAGCAGTTGAA+AGG | - | chr5.3:8681664-8681683 | MS.gene43555:CDS | 35.0% | |
| ACGGTTACGGTAGAATATAA+CGG | + | chr5.3:8682484-8682503 | None:intergenic | 35.0% | |
| CATAATTTGGCTATGGAATG+TGG | - | chr5.3:8682891-8682910 | MS.gene43555:intron | 35.0% | |
| CTTAAAATAGCCCAAGAACA+AGG | + | chr5.3:8682648-8682667 | None:intergenic | 35.0% | |
| GAAGCTAGTGAAAAAAATGG+AGG | - | chr5.3:8682263-8682282 | MS.gene43555:CDS | 35.0% | |
| GAGGCATGGTTTAAAGATAA+CGG | - | chr5.3:8682282-8682301 | MS.gene43555:CDS | 35.0% | |
| GTCATTAGGGAAAAACTCTA+CGG | + | chr5.3:8682514-8682533 | None:intergenic | 35.0% | |
| TAACCATCTTCACCTTCTTT+GGG | + | chr5.3:8682851-8682870 | None:intergenic | 35.0% | |
| TAGTGAAAAAAATGGAGGCA+TGG | - | chr5.3:8682268-8682287 | MS.gene43555:CDS | 35.0% | |
| TCTATGTTCTTGGTTTCAAC+AGG | - | chr5.3:8681928-8681947 | MS.gene43555:CDS | 35.0% | |
| TGCATAAAAACAGTCACATG+CGG | - | chr5.3:8681992-8682011 | MS.gene43555:CDS | 35.0% | |
| TGTGAATATATACCAGCATG+AGG | + | chr5.3:8681779-8681798 | None:intergenic | 35.0% | |
| TTAACCATCTTCACCTTCTT+TGG | + | chr5.3:8682852-8682871 | None:intergenic | 35.0% | |
| TTCGTGTTTCTCCTAATCAA+CGG | - | chr5.3:8682092-8682111 | MS.gene43555:CDS | 35.0% | |
| TTTGTTCTGTGAGCATAAAC+GGG | + | chr5.3:8682417-8682436 | None:intergenic | 35.0% | |
| ! | ACCAAACTCGCTTACATTTT+AGG | - | chr5.3:8682067-8682086 | MS.gene43555:CDS | 35.0% |
| ! | GATTATAGTGATGGTTCTGT+TGG | - | chr5.3:8683029-8683048 | MS.gene43555:CDS | 35.0% |
| ! | TGCTAAAACGACACGTATTT+TGG | - | chr5.3:8682734-8682753 | MS.gene43555:CDS | 35.0% |
| !! | CTTGGGCTATTTTAAGTGTT+TGG | - | chr5.3:8682652-8682671 | MS.gene43555:CDS | 35.0% |
| !! | TAAAGAGGTTTTTAAGCTCG+AGG | - | chr5.3:8682680-8682699 | MS.gene43555:CDS | 35.0% |
| !! | TGGATTTGTTTAGGCCTTTT+GGG | - | chr5.3:8682793-8682812 | MS.gene43555:intron | 35.0% |
| !!! | TCATTTTTTGTATGGGCTTG+GGG | - | chr5.3:8682818-8682837 | MS.gene43555:intron | 35.0% |
| AAAATAGCCCAAGAACAAGG+TGG | + | chr5.3:8682645-8682664 | None:intergenic | 40.0% | |
| AAATAGCCCAAGAACAAGGT+GGG | + | chr5.3:8682644-8682663 | None:intergenic | 40.0% | |
| AATTATGCGCAAACCCACAA+AGG | + | chr5.3:8682878-8682897 | None:intergenic | 40.0% | |
| AGAACAGCGTCAATGTCATT+AGG | + | chr5.3:8682528-8682547 | None:intergenic | 40.0% | |
| AGAAGGAGTTAACGGAATGA+TGG | + | chr5.3:8682457-8682476 | None:intergenic | 40.0% | |
| ATGTTCTTGGTTTCAACAGG+TGG | - | chr5.3:8681931-8681950 | MS.gene43555:CDS | 40.0% | |
| ATTATGCGCAAACCCACAAA+GGG | + | chr5.3:8682877-8682896 | None:intergenic | 40.0% | |
| CTAAACAAATCCAGAACCGA+CGG | + | chr5.3:8682786-8682805 | None:intergenic | 40.0% | |
| CTCTCGAACAATCACACTAA+CGG | + | chr5.3:8681622-8681641 | None:intergenic | 40.0% | |
| GAACAGCGTCAATGTCATTA+GGG | + | chr5.3:8682527-8682546 | None:intergenic | 40.0% | |
| GCCTAAAATGTAAGCGAGTT+TGG | + | chr5.3:8682071-8682090 | None:intergenic | 40.0% | |
| GGTCCAAAAGAAACCTATCT+GGG | + | chr5.3:8682623-8682642 | None:intergenic | 40.0% | |
| GTTGAAAGGACATGTGAAGT+TGG | - | chr5.3:8681678-8681697 | MS.gene43555:CDS | 40.0% | |
| GTTGATTAGGAGAAACACGA+AGG | + | chr5.3:8682093-8682112 | None:intergenic | 40.0% | |
| GTTTGCGCATAATTTGGCTA+TGG | - | chr5.3:8682884-8682903 | MS.gene43555:intron | 40.0% | |
| TAGAATATAACGGCGTCAGA+AGG | + | chr5.3:8682474-8682493 | None:intergenic | 40.0% | |
| TATACCAGCATGAGGAAAGA+AGG | + | chr5.3:8681771-8681790 | None:intergenic | 40.0% | |
| TCATGTGAACCATTGAGGTT+TGG | - | chr5.3:8682942-8682961 | MS.gene43555:CDS | 40.0% | |
| TGAGGTATACCAAACCTCAA+TGG | + | chr5.3:8682954-8682973 | None:intergenic | 40.0% | |
| TTGCTTCATGTGAACCATTG+AGG | - | chr5.3:8682937-8682956 | MS.gene43555:CDS | 40.0% | |
| TTGTGGGTTTGCGCATAATT+TGG | - | chr5.3:8682878-8682897 | MS.gene43555:intron | 40.0% | |
| TTGTTCTGTGAGCATAAACG+GGG | + | chr5.3:8682416-8682435 | None:intergenic | 40.0% | |
| ! | AAGAGAGAAAGTTGGTCACT+AGG | + | chr5.3:8681705-8681724 | None:intergenic | 40.0% |
| ! | CGGCGCTGAATATTCATATA+TGG | - | chr5.3:8682302-8682321 | MS.gene43555:CDS | 40.0% |
| ! | TGAGGTTTGGTATACCTCAT+TGG | - | chr5.3:8682955-8682974 | MS.gene43555:CDS | 40.0% |
| ! | TTGGTAGCATACCGTTGATT+AGG | + | chr5.3:8682106-8682125 | None:intergenic | 40.0% |
| !! | AAACGACACGTATTTTGGAC+CGG | - | chr5.3:8682739-8682758 | MS.gene43555:CDS | 40.0% |
| !! | AAGCGAGTTTGGTGTAAACT+GGG | + | chr5.3:8682060-8682079 | None:intergenic | 40.0% |
| !! | CTCTCTAGGATCCACAAAAA+TGG | + | chr5.3:8683084-8683103 | None:intergenic | 40.0% |
| !! | CTGGATTTGTTTAGGCCTTT+TGG | - | chr5.3:8682792-8682811 | MS.gene43555:intron | 40.0% |
| !! | TAAGCGAGTTTGGTGTAAAC+TGG | + | chr5.3:8682061-8682080 | None:intergenic | 40.0% |
| !!! | CATTTTTTGTATGGGCTTGG+GGG | - | chr5.3:8682819-8682838 | MS.gene43555:intron | 40.0% |
| !!! | TGTACTGTTTTTGATGGTGC+AGG | - | chr5.3:8682223-8682242 | MS.gene43555:CDS | 40.0% |
| !!! | TTTTGATGGTGCAGGAGAAT+GGG | - | chr5.3:8682231-8682250 | MS.gene43555:CDS | 40.0% |
| !!! | TTTTTGATGGTGCAGGAGAA+TGG | - | chr5.3:8682230-8682249 | MS.gene43555:CDS | 40.0% |
| AAAAGAAACCTATCTGGGCC+AGG | + | chr5.3:8682618-8682637 | None:intergenic | 45.0% | |
| AAGATGGTTAAGGCCCTTTG+TGG | - | chr5.3:8682861-8682880 | MS.gene43555:intron | 45.0% | |
| AGATGGTTAAGGCCCTTTGT+GGG | - | chr5.3:8682862-8682881 | MS.gene43555:intron | 45.0% | |
| ATTGGACCAAGTCTATGCCA+GGG | - | chr5.3:8683054-8683073 | MS.gene43555:CDS | 45.0% | |
| CTACGGTAGAGAAACGGTTA+CGG | + | chr5.3:8682497-8682516 | None:intergenic | 45.0% | |
| GGGTCCAAAAGAAACCTATC+TGG | + | chr5.3:8682624-8682643 | None:intergenic | 45.0% | |
| GGTCCTACAGTGTCAAAACA+TGG | - | chr5.3:8682592-8682611 | MS.gene43555:intron | 45.0% | |
| TACAGTGTCAAAACATGGCC+TGG | - | chr5.3:8682597-8682616 | MS.gene43555:intron | 45.0% | |
| TCCACAAAAATGGAGATCCC+TGG | + | chr5.3:8683074-8683093 | None:intergenic | 45.0% | |
| TGACGAGAATTGACGGTGTA+CGG | + | chr5.3:8682392-8682411 | None:intergenic | 45.0% | |
| TGTCGGTGAAGAGAGAAAGT+TGG | + | chr5.3:8681713-8681732 | None:intergenic | 45.0% | |
| TTTGGACCCACCTTGTTCTT+GGG | - | chr5.3:8682635-8682654 | MS.gene43555:CDS | 45.0% | |
| ! | ACTTTTCTTGCCGTACCAAG+TGG | - | chr5.3:8682570-8682589 | MS.gene43555:intron | 45.0% |
| ! | CTTTTCTTGCCGTACCAAGT+GGG | - | chr5.3:8682571-8682590 | MS.gene43555:intron | 45.0% |
| ! | TGGCCCAGATAGGTTTCTTT+TGG | - | chr5.3:8682617-8682636 | MS.gene43555:CDS | 45.0% |
| ! | TTTTGGACCCACCTTGTTCT+TGG | - | chr5.3:8682634-8682653 | MS.gene43555:CDS | 45.0% |
| !! | AACGACACGTATTTTGGACC+GGG | - | chr5.3:8682740-8682759 | MS.gene43555:CDS | 45.0% |
| !! | CGTCGGTTCTGGATTTGTTT+AGG | - | chr5.3:8682784-8682803 | MS.gene43555:intron | 45.0% |
| !! | GTGATGGTTCTGTTGGTGAT+TGG | - | chr5.3:8683036-8683055 | MS.gene43555:CDS | 45.0% |
| !! | GTTTTTAAGCTCGAGGTACG+TGG | - | chr5.3:8682687-8682706 | MS.gene43555:CDS | 45.0% |
| !!! | AGGCCATGTTTTGACACTGT+AGG | + | chr5.3:8682598-8682617 | None:intergenic | 45.0% |
| AATGGGGTCACCAAGCATGT+CGG | + | chr5.3:8681730-8681749 | None:intergenic | 50.0% | |
| ACGGCGTCAGAAGGAGTTAA+CGG | + | chr5.3:8682465-8682484 | None:intergenic | 50.0% | |
| ACGGGGTTGACGAGAATTGA+CGG | + | chr5.3:8682399-8682418 | None:intergenic | 50.0% | |
| ACTGTAGGACCCACTTGGTA+CGG | + | chr5.3:8682583-8682602 | None:intergenic | 50.0% | |
| AGGCCCAAAGAAGGTGAAGA+TGG | - | chr5.3:8682845-8682864 | MS.gene43555:intron | 50.0% | |
| CTCACCTTCTTTCCTCATGC+TGG | - | chr5.3:8681764-8681783 | MS.gene43555:CDS | 50.0% | |
| GATTGGACCAAGTCTATGCC+AGG | - | chr5.3:8683053-8683072 | MS.gene43555:CDS | 50.0% | |
| GCATGAGGAAAGAAGGTGAG+TGG | + | chr5.3:8681764-8681783 | None:intergenic | 50.0% | |
| GGTGCAGGAGAATGGGAATA+GGG | - | chr5.3:8682238-8682257 | MS.gene43555:CDS | 50.0% | |
| TCTCTCTTCACCGACATGCT+TGG | - | chr5.3:8681717-8681736 | MS.gene43555:CDS | 50.0% | |
| TGAGGAAAGAAGGTGAGTGG+CGG | + | chr5.3:8681761-8681780 | None:intergenic | 50.0% | |
| TGGCTATGGAATGTGGGTGT+GGG | - | chr5.3:8682898-8682917 | MS.gene43555:intron | 50.0% | |
| TGGTGCAGGAGAATGGGAAT+AGG | - | chr5.3:8682237-8682256 | MS.gene43555:CDS | 50.0% | |
| TTGACACTGTAGGACCCACT+TGG | + | chr5.3:8682588-8682607 | None:intergenic | 50.0% | |
| TTGGCTATGGAATGTGGGTG+TGG | - | chr5.3:8682897-8682916 | MS.gene43555:intron | 50.0% | |
| !! | GCCAGGGATCTCCATTTTTG+TGG | - | chr5.3:8683070-8683089 | MS.gene43555:CDS | 50.0% |
| AAACATGGCCTGGCCCAGAT+AGG | - | chr5.3:8682607-8682626 | MS.gene43555:CDS | 55.0% | |
| ACCGACGGTACCTTCAACCA+CGG | + | chr5.3:8682771-8682790 | None:intergenic | 55.0% | |
| GGAGATCCCTGGCATAGACT+TGG | + | chr5.3:8683063-8683082 | None:intergenic | 55.0% | |
| GGCTATGGAATGTGGGTGTG+GGG | - | chr5.3:8682899-8682918 | MS.gene43555:intron | 55.0% | |
| TTGTATGGGCTTGGGGGTGA+AGG | - | chr5.3:8682825-8682844 | MS.gene43555:intron | 55.0% | |
| ! | GCTTGGTGACCCCATTTGCA+GGG | - | chr5.3:8681734-8681753 | MS.gene43555:CDS | 55.0% |
| ! | TGCTTGGTGACCCCATTTGC+AGG | - | chr5.3:8681733-8681752 | MS.gene43555:CDS | 55.0% |
| !! | GTTGAAGGTACCGTCGGTTC+TGG | - | chr5.3:8682773-8682792 | MS.gene43555:intron | 55.0% |
| CCTTCAACCACGGCAAAGCC+CGG | + | chr5.3:8682761-8682780 | None:intergenic | 60.0% | |
| GGAATGTGGGTGTGGGGTTG+TGG | - | chr5.3:8682905-8682924 | MS.gene43555:intron | 60.0% | |
| GTGTGGGGTTGTGGCTACTG+AGG | - | chr5.3:8682914-8682933 | MS.gene43555:intron | 60.0% | |
| TGGGGGTGAAGGCCCAAAGA+AGG | - | chr5.3:8682836-8682855 | MS.gene43555:intron | 60.0% | |
| ! | TTTTGGACCGGGCTTTGCCG+TGG | - | chr5.3:8682751-8682770 | MS.gene43555:intron | 60.0% |
| !! | AGTGGCGGACCCTGCAAATG+GGG | + | chr5.3:8681746-8681765 | None:intergenic | 60.0% |
| !! | GAGTGGCGGACCCTGCAAAT+GGG | + | chr5.3:8681747-8681766 | None:intergenic | 60.0% |
| !! | GCCGTGGTTGAAGGTACCGT+CGG | - | chr5.3:8682767-8682786 | MS.gene43555:intron | 60.0% |
| !! | TGAGTGGCGGACCCTGCAAA+TGG | + | chr5.3:8681748-8681767 | None:intergenic | 60.0% |
| CCGGGCTTTGCCGTGGTTGA+AGG | - | chr5.3:8682758-8682777 | MS.gene43555:intron | 65.0% | |
| GCGCGTCGCGTGTCAAGCGC+GGG | - | chr5.3:8682709-8682728 | MS.gene43555:CDS | 75.0% | |
| GGCGCGTCGCGTGTCAAGCG+CGG | - | chr5.3:8682708-8682727 | MS.gene43555:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 8681603 | 8683109 | 8681603 | ID=MS.gene43555 |
| chr5.3 | mRNA | 8681603 | 8683109 | 8681603 | ID=MS.gene43555.t1;Parent=MS.gene43555 |
| chr5.3 | exon | 8682927 | 8683109 | 8682927 | ID=MS.gene43555.t1.exon1;Parent=MS.gene43555.t1 |
| chr5.3 | CDS | 8682927 | 8683109 | 8682927 | ID=cds.MS.gene43555.t1;Parent=MS.gene43555.t1 |
| chr5.3 | exon | 8682599 | 8682762 | 8682599 | ID=MS.gene43555.t1.exon2;Parent=MS.gene43555.t1 |
| chr5.3 | CDS | 8682599 | 8682762 | 8682599 | ID=cds.MS.gene43555.t1;Parent=MS.gene43555.t1 |
| chr5.3 | exon | 8681603 | 8682467 | 8681603 | ID=MS.gene43555.t1.exon3;Parent=MS.gene43555.t1 |
| chr5.3 | CDS | 8681603 | 8682467 | 8681603 | ID=cds.MS.gene43555.t1;Parent=MS.gene43555.t1 |
| Gene Sequence |
| Protein sequence |
