Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015491.t1 | RHN53681.1 | 97.9 | 330 | 7 | 0 | 1 | 330 | 98 | 427 | 3.00E-167 | 597.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015491.t1 | B8BDK4 | 66.0 | 321 | 109 | 0 | 1 | 321 | 77 | 397 | 5.1e-115 | 415.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015491.t1 | G7KEV9 | 97.9 | 330 | 7 | 0 | 1 | 330 | 1 | 330 | 2.2e-167 | 597.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene015491 | MS.gene060557 | PPI |
| MS.gene038718 | MS.gene015491 | PPI |
| MS.gene015491 | MS.gene036870 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015491.t1 | MTR_5g011450 | 97.879 | 330 | 7 | 0 | 1 | 330 | 1 | 330 | 0.0 | 629 |
| MS.gene015491.t1 | MTR_5g011440 | 77.882 | 321 | 71 | 0 | 1 | 321 | 95 | 415 | 1.37e-177 | 498 |
| MS.gene015491.t1 | MTR_5g011440 | 77.882 | 321 | 71 | 0 | 1 | 321 | 102 | 422 | 2.28e-177 | 498 |
| MS.gene015491.t1 | MTR_5g011440 | 78.618 | 304 | 65 | 0 | 1 | 304 | 102 | 405 | 1.64e-168 | 475 |
| MS.gene015491.t1 | MTR_7g053090 | 42.345 | 307 | 167 | 5 | 16 | 321 | 97 | 394 | 3.50e-63 | 206 |
| MS.gene015491.t1 | MTR_4g113090 | 32.372 | 312 | 200 | 4 | 10 | 321 | 97 | 397 | 3.82e-46 | 161 |
| MS.gene015491.t1 | MTR_2g073190 | 33.667 | 300 | 189 | 4 | 20 | 319 | 382 | 671 | 1.41e-42 | 156 |
| MS.gene015491.t1 | MTR_2g073070 | 36.522 | 230 | 139 | 4 | 99 | 327 | 16 | 239 | 3.28e-37 | 133 |
| MS.gene015491.t1 | MTR_2g078500 | 73.494 | 83 | 21 | 1 | 44 | 126 | 37 | 118 | 1.31e-36 | 128 |
| MS.gene015491.t1 | MTR_2g078490 | 57.895 | 95 | 39 | 1 | 15 | 109 | 314 | 407 | 2.41e-24 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015491.t1 | AT4G22840 | 66.144 | 319 | 108 | 0 | 7 | 325 | 89 | 407 | 1.04e-151 | 432 |
| MS.gene015491.t1 | AT4G12030 | 60.062 | 323 | 129 | 0 | 2 | 324 | 85 | 407 | 1.03e-138 | 399 |
| MS.gene015491.t1 | AT4G12030 | 60.443 | 316 | 125 | 0 | 9 | 324 | 1 | 316 | 2.41e-138 | 395 |
| MS.gene015491.t1 | AT4G12030 | 60.870 | 276 | 105 | 1 | 52 | 327 | 1 | 273 | 5.58e-119 | 344 |
| MS.gene015491.t1 | AT4G12030 | 60.870 | 276 | 105 | 1 | 52 | 327 | 1 | 273 | 5.58e-119 | 344 |
| MS.gene015491.t1 | AT4G12030 | 60.870 | 276 | 105 | 1 | 52 | 327 | 1 | 273 | 5.58e-119 | 344 |
| MS.gene015491.t1 | AT3G25410 | 40.752 | 319 | 173 | 6 | 10 | 321 | 100 | 409 | 2.26e-64 | 210 |
| MS.gene015491.t1 | AT2G26900 | 33.227 | 313 | 198 | 4 | 10 | 322 | 96 | 397 | 1.02e-47 | 166 |
| MS.gene015491.t1 | AT1G78560 | 30.945 | 307 | 202 | 4 | 20 | 326 | 102 | 398 | 2.24e-42 | 151 |
Find 56 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTTGTCATCTTTCGTATC+TGG | 0.253548 | 5.4:+5944732 | MS.gene015491:CDS |
| CTAATATTTGTAACGCTATT+CGG | 0.265425 | 5.4:+5944586 | MS.gene015491:CDS |
| ATAATATCAGGAAATTTATT+TGG | 0.265893 | 5.4:+5943852 | MS.gene015491:CDS |
| AGACTTCCTATTGATGTAAA+AGG | 0.289330 | 5.4:+5944404 | MS.gene015491:CDS |
| GTGCTTGTTCCTATCACATT+TGG | 0.327264 | 5.4:+5944452 | MS.gene015491:CDS |
| TATCTTCTTTGCATAATATC+AGG | 0.336822 | 5.4:+5943840 | MS.gene015491:CDS |
| TTTGTGGTGAAGCCTCTTCT+TGG | 0.340759 | 5.4:+5943816 | MS.gene015491:CDS |
| GATGTCATAACTATGCTTAA+TGG | 0.342890 | 5.4:-5944320 | None:intergenic |
| CGAATAGCGTTACAAATATT+AGG | 0.343902 | 5.4:-5944585 | None:intergenic |
| GTCTCCGCTTATGTCTTTGA+TGG | 0.359741 | 5.4:+5945557 | MS.gene015491:intron |
| ACTTCCTTGAGGCATTTAAC+AGG | 0.375791 | 5.4:+5943760 | MS.gene015491:CDS |
| GTATCTGGTTATATTCTTAG+TGG | 0.383721 | 5.4:+5944747 | MS.gene015491:CDS |
| CTCTGTAGTGGCTTCACATC+AGG | 0.384857 | 5.4:-5944789 | None:intergenic |
| GTATTGCTGGCTTGTGTTAG+TGG | 0.394186 | 5.4:+5944248 | MS.gene015491:CDS |
| TGATCCTCACCTATTGTTGA+TGG | 0.394333 | 5.4:-5943879 | None:intergenic |
| CATTTGGTCTACTTCTAAAT+CGG | 0.404279 | 5.4:+5944468 | MS.gene015491:CDS |
| TTTGGTCTACCATCAACAAT+AGG | 0.405928 | 5.4:+5943870 | MS.gene015491:CDS |
| TGGAGTTAATTCAAGTGAAA+AGG | 0.427672 | 5.4:+5943737 | MS.gene015491:CDS |
| TTCTTTGAAGATCCCGTTGT+CGG | 0.434911 | 5.4:+5944964 | MS.gene015491:CDS |
| AGGCGCAGGAATTGTATTGC+TGG | 0.440884 | 5.4:+5944235 | MS.gene015491:intron |
| ATGCTTAATGGTGCCATTTG+TGG | 0.441060 | 5.4:-5944308 | None:intergenic |
| AGCTTATGTTGGTCAGTTTG+TGG | 0.449656 | 5.4:+5943800 | MS.gene015491:CDS |
| TTTGCCTCCACTATCAGTAT+TGG | 0.451666 | 5.4:+5944614 | MS.gene015491:CDS |
| AGAAGTAGACCAAATGTGAT+AGG | 0.455467 | 5.4:-5944461 | None:intergenic |
| TTGGTTGCAGCTCTCTCTGC+AGG | 0.481902 | 5.4:+5944633 | MS.gene015491:CDS |
| GCAGAAGGCATACCGACAAC+GGG | 0.488370 | 5.4:-5944976 | None:intergenic |
| GCTGCAACCAATACTGATAG+TGG | 0.503530 | 5.4:-5944621 | None:intergenic |
| AAGGAAATTGTTCTCTGTAG+TGG | 0.503531 | 5.4:-5944801 | None:intergenic |
| AGAACAATTTCCTTTGAGAC+AGG | 0.506235 | 5.4:+5944810 | MS.gene015491:CDS |
| TCTCCGCTTATGTCTTTGAT+GGG | 0.517610 | 5.4:+5945558 | MS.gene015491:CDS |
| GCAAAGTAGCCTCCTTGCCT+TGG | 0.521783 | 5.4:+5944927 | MS.gene015491:CDS |
| GGATATTTGATGTTTGCAGT+TGG | 0.525927 | 5.4:+5943717 | MS.gene015491:CDS |
| GTGCTAGCAAGGACTACATA+AGG | 0.527952 | 5.4:-5943522 | None:intergenic |
| AACATCAAATATCCTAGTGC+AGG | 0.529146 | 5.4:-5943708 | None:intergenic |
| AGATACTATGCTCCTGCACT+AGG | 0.533001 | 5.4:+5943696 | MS.gene015491:intron |
| TCCTATTGATGTAAAAGGAA+TGG | 0.538140 | 5.4:+5944409 | MS.gene015491:CDS |
| CAAAGAAGATATCCAAGAAG+AGG | 0.541913 | 5.4:-5943828 | None:intergenic |
| TAAGCTGTGACAAGTTCTGC+TGG | 0.548696 | 5.4:-5943783 | None:intergenic |
| ATCGCTATCCACTATTTCTG+CGG | 0.558329 | 5.4:+5944340 | MS.gene015491:CDS |
| TAAAGTTGTACCTGTCTCAA+AGG | 0.561214 | 5.4:-5944820 | None:intergenic |
| GCGCTACCAGTGTGCTAGCA+AGG | 0.562805 | 5.4:-5943533 | None:intergenic |
| TGCAGAAGGCATACCGACAA+CGG | 0.565342 | 5.4:-5944977 | None:intergenic |
| AAACTTACAGAAATTGCAGA+AGG | 0.575076 | 5.4:-5944991 | None:intergenic |
| GAACTTGTCACAGCTTATGT+TGG | 0.581638 | 5.4:+5943789 | MS.gene015491:CDS |
| GTAAACCACGTAAAAGAATG+TGG | 0.590600 | 5.4:-5943564 | None:intergenic |
| TATTAGCAAGAGCCAAGGCA+AGG | 0.598369 | 5.4:-5944939 | None:intergenic |
| CTGGCCTGTTAAATGCCTCA+AGG | 0.612933 | 5.4:-5943764 | None:intergenic |
| GCTTCACATCAGGTGAGTCA+CGG | 0.613502 | 5.4:-5944779 | None:intergenic |
| GAATTTATTAGCAAGAGCCA+AGG | 0.620867 | 5.4:-5944944 | None:intergenic |
| AATCCCATCAAAGACATAAG+CGG | 0.624868 | 5.4:-5945561 | None:intergenic |
| TGTAGTCCTTGCTAGCACAC+TGG | 0.627989 | 5.4:+5943527 | MS.gene015491:CDS |
| TAAACCACGTAAAAGAATGT+GGG | 0.649335 | 5.4:-5943563 | None:intergenic |
| AAGTGAAAAGGACTTCCTTG+AGG | 0.680050 | 5.4:+5943749 | MS.gene015491:CDS |
| GCAACCAATACTGATAGTGG+AGG | 0.681094 | 5.4:-5944618 | None:intergenic |
| TAGCAAGAGCCAAGGCAAGG+AGG | 0.692627 | 5.4:-5944936 | None:intergenic |
| GATTTGATGTTAAGAGCGAG+TGG | 0.710228 | 5.4:-5944660 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAAATCTGTTAAAAC+AGG | - | chr5.4:5945517-5945536 | None:intergenic | 15.0% |
| !! | AAATTTGCAATACATTTATA+AGG | - | chr5.4:5944065-5944084 | None:intergenic | 15.0% |
| !! | AATTTGCAATACATTTATAA+GGG | - | chr5.4:5944064-5944083 | None:intergenic | 15.0% |
| !! | ATAAAAAACAATAATAAGAG+TGG | - | chr5.4:5944377-5944396 | None:intergenic | 15.0% |
| !! | ATAAGAAATTGCAAAAAATT+TGG | - | chr5.4:5943951-5943970 | None:intergenic | 15.0% |
| !! | ATAATATCAGGAAATTTATT+TGG | + | chr5.4:5943852-5943871 | MS.gene015491:CDS | 15.0% |
| !! | TAAGAAATTGCAAAAAATTT+GGG | - | chr5.4:5943950-5943969 | None:intergenic | 15.0% |
| !!! | CTCTTATTATTGTTTTTTAT+CGG | + | chr5.4:5944377-5944396 | MS.gene015491:CDS | 15.0% |
| !!! | TCTTATTATTGTTTTTTATC+GGG | + | chr5.4:5944378-5944397 | MS.gene015491:CDS | 15.0% |
| !! | AAAAAGATAGAAAAACCAAA+GGG | - | chr5.4:5944696-5944715 | None:intergenic | 20.0% |
| !! | GGTTTATATAAGAAATTCAA+GGG | - | chr5.4:5943981-5944000 | None:intergenic | 20.0% |
| !! | GTTTATATAAGAAATTCAAG+GGG | - | chr5.4:5943980-5943999 | None:intergenic | 20.0% |
| !! | TATATAAACCCCTATAAATT+GGG | + | chr5.4:5943991-5944010 | MS.gene015491:intron | 20.0% |
| !! | TTATATAAACCCCTATAAAT+TGG | + | chr5.4:5943990-5944009 | MS.gene015491:intron | 20.0% |
| !!! | AACATAAGTGTTTTCTTAAA+AGG | + | chr5.4:5944520-5944539 | MS.gene015491:intron | 20.0% |
| !!! | ACTTTAATTTCTCCATTTTT+TGG | + | chr5.4:5944837-5944856 | MS.gene015491:intron | 20.0% |
| !!! | TCAAAAATCAATGTCTATTT+TGG | + | chr5.4:5943470-5943489 | MS.gene015491:CDS | 20.0% |
| ! | AAAAGATAGAAAAACCAAAG+GGG | - | chr5.4:5944695-5944714 | None:intergenic | 25.0% |
| ! | AAAGAAATTGCCCAATTTAT+AGG | - | chr5.4:5944004-5944023 | None:intergenic | 25.0% |
| ! | AAGAAATTGCCCAATTTATA+GGG | - | chr5.4:5944003-5944022 | None:intergenic | 25.0% |
| ! | ATAAAGAGCAAGAAAAAACT+TGG | + | chr5.4:5945609-5945628 | MS.gene015491:CDS | 25.0% |
| ! | CAAAAAGATAGAAAAACCAA+AGG | - | chr5.4:5944697-5944716 | None:intergenic | 25.0% |
| ! | CTAATATTTGTAACGCTATT+CGG | + | chr5.4:5944586-5944605 | MS.gene015491:CDS | 25.0% |
| ! | GGGTTTATATAAGAAATTCA+AGG | - | chr5.4:5943982-5944001 | None:intergenic | 25.0% |
| ! | TATCTTCTTTGCATAATATC+AGG | + | chr5.4:5943840-5943859 | MS.gene015491:CDS | 25.0% |
| !! | ATAAGTGTTTTCTTAAAAGG+TGG | + | chr5.4:5944523-5944542 | MS.gene015491:intron | 25.0% |
| !!! | AGTTTTAAGAAAGAAGTTCA+GGG | - | chr5.4:5944200-5944219 | None:intergenic | 25.0% |
| AAACTTACAGAAATTGCAGA+AGG | - | chr5.4:5944994-5945013 | None:intergenic | 30.0% | |
| AAAGATAGAAAAACCAAAGG+GGG | - | chr5.4:5944694-5944713 | None:intergenic | 30.0% | |
| AAATTGCAAAAAATTTGGGC+CGG | - | chr5.4:5943946-5943965 | None:intergenic | 30.0% | |
| AATGTAATCCTCATATCGAA+AGG | - | chr5.4:5945241-5945260 | None:intergenic | 30.0% | |
| AGAAATTGCCCAATTTATAG+GGG | - | chr5.4:5944002-5944021 | None:intergenic | 30.0% | |
| AGACTTCCTATTGATGTAAA+AGG | + | chr5.4:5944404-5944423 | MS.gene015491:CDS | 30.0% | |
| ATCCTGAAAACTGACATAAT+AGG | - | chr5.4:5944172-5944191 | None:intergenic | 30.0% | |
| CATCTATGACTATATTGCTA+CGG | - | chr5.4:5945434-5945453 | None:intergenic | 30.0% | |
| CATTTGGTCTACTTCTAAAT+CGG | + | chr5.4:5944468-5944487 | MS.gene015491:CDS | 30.0% | |
| CGAATAGCGTTACAAATATT+AGG | - | chr5.4:5944588-5944607 | None:intergenic | 30.0% | |
| CTTCTTTCTTAAAACTCCTT+TGG | + | chr5.4:5944204-5944223 | MS.gene015491:intron | 30.0% | |
| GATATGAGGATTACATTAGA+GGG | + | chr5.4:5945244-5945263 | MS.gene015491:intron | 30.0% | |
| GATGTCATAACTATGCTTAA+TGG | - | chr5.4:5944323-5944342 | None:intergenic | 30.0% | |
| GATTTATAACCAACAGAGAA+TGG | + | chr5.4:5945149-5945168 | MS.gene015491:intron | 30.0% | |
| GTATCTGGTTATATTCTTAG+TGG | + | chr5.4:5944747-5944766 | MS.gene015491:CDS | 30.0% | |
| GTTCCTATCCAAAGAAAAAA+GGG | - | chr5.4:5944139-5944158 | None:intergenic | 30.0% | |
| TAAACCACGTAAAAGAATGT+GGG | - | chr5.4:5943566-5943585 | None:intergenic | 30.0% | |
| TCCTATTGATGTAAAAGGAA+TGG | + | chr5.4:5944409-5944428 | MS.gene015491:CDS | 30.0% | |
| TGGAGTTAATTCAAGTGAAA+AGG | + | chr5.4:5943737-5943756 | MS.gene015491:CDS | 30.0% | |
| TGTTCCTATCCAAAGAAAAA+AGG | - | chr5.4:5944140-5944159 | None:intergenic | 30.0% | |
| ! | AACCTATTATGTCAGTTTTC+AGG | + | chr5.4:5944167-5944186 | MS.gene015491:intron | 30.0% |
| ! | ACCATTCCTTTTACATCAAT+AGG | - | chr5.4:5944413-5944432 | None:intergenic | 30.0% |
| ! | TTTTCTATCAGATCCACAAA+TGG | + | chr5.4:5944295-5944314 | MS.gene015491:CDS | 30.0% |
| !!! | GAGTTTTAAGAAAGAAGTTC+AGG | - | chr5.4:5944201-5944220 | None:intergenic | 30.0% |
| !!! | TATTGCAAATTTTTTTCGCC+CGG | + | chr5.4:5944073-5944092 | MS.gene015491:intron | 30.0% |
| AAATCAGTTAAATCCCCCTT+TGG | + | chr5.4:5944678-5944697 | MS.gene015491:CDS | 35.0% | |
| AAATTCATTTGTCCAACTGC+AGG | + | chr5.4:5944901-5944920 | MS.gene015491:intron | 35.0% | |
| AACATCAAATATCCTAGTGC+AGG | - | chr5.4:5943711-5943730 | None:intergenic | 35.0% | |
| AAGCTACTACAAACATCTGA+TGG | - | chr5.4:5944864-5944883 | None:intergenic | 35.0% | |
| AAGGAAATTGTTCTCTGTAG+TGG | - | chr5.4:5944804-5944823 | None:intergenic | 35.0% | |
| AATCCCATCAAAGACATAAG+CGG | - | chr5.4:5945564-5945583 | None:intergenic | 35.0% | |
| AGAAGTAGACCAAATGTGAT+AGG | - | chr5.4:5944464-5944483 | None:intergenic | 35.0% | |
| ATCCATGTTTACAAGGAAGT+GGG | + | chr5.4:5945197-5945216 | MS.gene015491:intron | 35.0% | |
| CAAAGAAGATATCCAAGAAG+AGG | - | chr5.4:5943831-5943850 | None:intergenic | 35.0% | |
| CATTTGTCATCTTTCGTATC+TGG | + | chr5.4:5944732-5944751 | MS.gene015491:CDS | 35.0% | |
| CGATATGAGGATTACATTAG+AGG | + | chr5.4:5945243-5945262 | MS.gene015491:intron | 35.0% | |
| CTCTATGTAGACTCCTATTA+TGG | + | chr5.4:5945018-5945037 | MS.gene015491:intron | 35.0% | |
| GAATTTATTAGCAAGAGCCA+AGG | - | chr5.4:5944947-5944966 | None:intergenic | 35.0% | |
| GACACAAACATGACCATAAT+AGG | - | chr5.4:5945034-5945053 | None:intergenic | 35.0% | |
| GCTCAAAAAACGCTTAAAAG+TGG | - | chr5.4:5945283-5945302 | None:intergenic | 35.0% | |
| GGATATTTGATGTTTGCAGT+TGG | + | chr5.4:5943717-5943736 | MS.gene015491:CDS | 35.0% | |
| GTAAACCACGTAAAAGAATG+TGG | - | chr5.4:5943567-5943586 | None:intergenic | 35.0% | |
| GTCTCTTATCCATGTTTACA+AGG | + | chr5.4:5945190-5945209 | MS.gene015491:intron | 35.0% | |
| TAAAGTTGTACCTGTCTCAA+AGG | - | chr5.4:5944823-5944842 | None:intergenic | 35.0% | |
| TATCCATGTTTACAAGGAAG+TGG | + | chr5.4:5945196-5945215 | MS.gene015491:intron | 35.0% | |
| TTTGGTCTACCATCAACAAT+AGG | + | chr5.4:5943870-5943889 | MS.gene015491:CDS | 35.0% | |
| ! | ACATCTGATGGACCAAAAAA+TGG | - | chr5.4:5944852-5944871 | None:intergenic | 35.0% |
| ! | GATTTTCTCTTGCTCTGATT+TGG | + | chr5.4:5945580-5945599 | MS.gene015491:CDS | 35.0% |
| !! | AGAACAATTTCCTTTGAGAC+AGG | + | chr5.4:5944810-5944829 | MS.gene015491:CDS | 35.0% |
| !!! | ATTGCAAATTTTTTTCGCCC+GGG | + | chr5.4:5944074-5944093 | MS.gene015491:intron | 35.0% |
| !!! | TTAAGCGTTTTTTGAGCCTA+GGG | + | chr5.4:5945286-5945305 | MS.gene015491:intron | 35.0% |
| !!! | TTTAAGCGTTTTTTGAGCCT+AGG | + | chr5.4:5945285-5945304 | MS.gene015491:intron | 35.0% |
| AAGTGAAAAGGACTTCCTTG+AGG | + | chr5.4:5943749-5943768 | MS.gene015491:CDS | 40.0% | |
| AGCTTATGTTGGTCAGTTTG+TGG | + | chr5.4:5943800-5943819 | MS.gene015491:CDS | 40.0% | |
| AGTGTCTGCATGAATGGTAT+AGG | + | chr5.4:5945099-5945118 | MS.gene015491:intron | 40.0% | |
| ATCAACAATAGGTGAGGATC+AGG | + | chr5.4:5943881-5943900 | MS.gene015491:intron | 40.0% | |
| ATCCCACTTCCTTGTAAACA+TGG | - | chr5.4:5945202-5945221 | None:intergenic | 40.0% | |
| GAACTTGTCACAGCTTATGT+TGG | + | chr5.4:5943789-5943808 | MS.gene015491:CDS | 40.0% | |
| GACAAAAACCGCAGAAATAG+TGG | - | chr5.4:5944351-5944370 | None:intergenic | 40.0% | |
| GATTTGATGTTAAGAGCGAG+TGG | - | chr5.4:5944663-5944682 | None:intergenic | 40.0% | |
| GTGCTTGTTCCTATCACATT+TGG | + | chr5.4:5944452-5944471 | MS.gene015491:CDS | 40.0% | |
| GTTACAAGTGTCTGCATGAA+TGG | + | chr5.4:5945093-5945112 | MS.gene015491:intron | 40.0% | |
| TCAACAATAGGTGAGGATCA+GGG | + | chr5.4:5943882-5943901 | MS.gene015491:intron | 40.0% | |
| TCTACCATCAACAATAGGTG+AGG | + | chr5.4:5943875-5943894 | MS.gene015491:intron | 40.0% | |
| TCTCCGCTTATGTCTTTGAT+GGG | + | chr5.4:5945558-5945577 | MS.gene015491:CDS | 40.0% | |
| TGATCCTCACCTATTGTTGA+TGG | - | chr5.4:5943882-5943901 | None:intergenic | 40.0% | |
| TTTGCCTCCACTATCAGTAT+TGG | + | chr5.4:5944614-5944633 | MS.gene015491:CDS | 40.0% | |
| ! | ACTTCCTTGAGGCATTTAAC+AGG | + | chr5.4:5943760-5943779 | MS.gene015491:CDS | 40.0% |
| ! | AGAGAATGGTCTAGTTGGTA+AGG | + | chr5.4:5945163-5945182 | MS.gene015491:intron | 40.0% |
| ! | CCAGGATTTTTATAAAGCCC+GGG | - | chr5.4:5944094-5944113 | None:intergenic | 40.0% |
| ! | GCCAGGATTTTTATAAAGCC+CGG | - | chr5.4:5944095-5944114 | None:intergenic | 40.0% |
| ! | TCTTCCCACATTCTTTTACG+TGG | + | chr5.4:5943559-5943578 | MS.gene015491:CDS | 40.0% |
| ! | TTCTTTGAAGATCCCGTTGT+CGG | + | chr5.4:5944964-5944983 | MS.gene015491:CDS | 40.0% |
| !! | AAATTGAGCTGAGTTGATCC+CGG | - | chr5.4:5945352-5945371 | None:intergenic | 40.0% |
| !! | ACTGATAGTGGAGGCAAAAA+CGG | - | chr5.4:5944612-5944631 | None:intergenic | 40.0% |
| !! | ATCGCTATCCACTATTTCTG+CGG | + | chr5.4:5944340-5944359 | MS.gene015491:CDS | 40.0% |
| !! | ATGCTTAATGGTGCCATTTG+TGG | - | chr5.4:5944311-5944330 | None:intergenic | 40.0% |
| !!! | AGGATGGTCCCTTTTTTCTT+TGG | + | chr5.4:5944128-5944147 | MS.gene015491:intron | 40.0% |
| !!! | GGTCCCTTTTTTCTTTGGAT+AGG | + | chr5.4:5944133-5944152 | MS.gene015491:intron | 40.0% |
| !!! | TAAGCGTTTTTTGAGCCTAG+GGG | + | chr5.4:5945287-5945306 | MS.gene015491:intron | 40.0% |
| AAACTCCTTTGGTATCCCTC+AGG | + | chr5.4:5944215-5944234 | MS.gene015491:intron | 45.0% | |
| AAGAAAATCGACAGACCTGC+TGG | - | chr5.4:5943589-5943608 | None:intergenic | 45.0% | |
| AATACAATTCCTGCGCCTGA+GGG | - | chr5.4:5944233-5944252 | None:intergenic | 45.0% | |
| AGATACTATGCTCCTGCACT+AGG | + | chr5.4:5943696-5943715 | MS.gene015491:intron | 45.0% | |
| CAACAATAGGTGAGGATCAG+GGG | + | chr5.4:5943883-5943902 | MS.gene015491:intron | 45.0% | |
| CCAACAGAGAATGGTCTAGT+TGG | + | chr5.4:5945158-5945177 | MS.gene015491:intron | 45.0% | |
| CCAACTAGACCATTCTCTGT+TGG | - | chr5.4:5945161-5945180 | None:intergenic | 45.0% | |
| CTACTTTGCATTCCTGCAGT+TGG | - | chr5.4:5944916-5944935 | None:intergenic | 45.0% | |
| GCTGCAACCAATACTGATAG+TGG | - | chr5.4:5944624-5944643 | None:intergenic | 45.0% | |
| GTCTCCGCTTATGTCTTTGA+TGG | + | chr5.4:5945557-5945576 | MS.gene015491:intron | 45.0% | |
| GTGCTAGCAAGGACTACATA+AGG | - | chr5.4:5943525-5943544 | None:intergenic | 45.0% | |
| TAAGCTGTGACAAGTTCTGC+TGG | - | chr5.4:5943786-5943805 | None:intergenic | 45.0% | |
| TATTAGCAAGAGCCAAGGCA+AGG | - | chr5.4:5944942-5944961 | None:intergenic | 45.0% | |
| TGCTGTAGCCTTTCGATATG+AGG | + | chr5.4:5945230-5945249 | MS.gene015491:intron | 45.0% | |
| TTTGTGGTGAAGCCTCTTCT+TGG | + | chr5.4:5943816-5943835 | MS.gene015491:CDS | 45.0% | |
| ! | CCCGGGCTTTATAAAAATCC+TGG | + | chr5.4:5944091-5944110 | MS.gene015491:intron | 45.0% |
| ! | CTTTTACGTGGTTTACCAGC+AGG | + | chr5.4:5943571-5943590 | MS.gene015491:CDS | 45.0% |
| !! | GCAACCAATACTGATAGTGG+AGG | - | chr5.4:5944621-5944640 | None:intergenic | 45.0% |
| !! | GTATTGCTGGCTTGTGTTAG+TGG | + | chr5.4:5944248-5944267 | MS.gene015491:CDS | 45.0% |
| AGGCGCAGGAATTGTATTGC+TGG | + | chr5.4:5944235-5944254 | MS.gene015491:intron | 50.0% | |
| CAATACAATTCCTGCGCCTG+AGG | - | chr5.4:5944234-5944253 | None:intergenic | 50.0% | |
| CTCTGTAGTGGCTTCACATC+AGG | - | chr5.4:5944792-5944811 | None:intergenic | 50.0% | |
| CTGGCCTGTTAAATGCCTCA+AGG | - | chr5.4:5943767-5943786 | None:intergenic | 50.0% | |
| GAGGCTCACTATCAGGATCA+GGG | - | chr5.4:5945317-5945336 | None:intergenic | 50.0% | |
| GCTTCACATCAGGTGAGTCA+CGG | - | chr5.4:5944782-5944801 | None:intergenic | 50.0% | |
| TGTAGTCCTTGCTAGCACAC+TGG | + | chr5.4:5943527-5943546 | MS.gene015491:CDS | 50.0% | |
| ! | TGCAGAAGGCATACCGACAA+CGG | - | chr5.4:5944980-5944999 | None:intergenic | 50.0% |
| AAAAATCCTGGCTCCGCCAC+TGG | + | chr5.4:5944103-5944122 | MS.gene015491:intron | 55.0% | |
| AAAGGGACCATCCTCACCAG+TGG | - | chr5.4:5944122-5944141 | None:intergenic | 55.0% | |
| CAATAGGTGAGGATCAGGGG+CGG | + | chr5.4:5943886-5943905 | MS.gene015491:intron | 55.0% | |
| GCAAAGTAGCCTCCTTGCCT+TGG | + | chr5.4:5944927-5944946 | MS.gene015491:CDS | 55.0% | |
| GGAGGCTCACTATCAGGATC+AGG | - | chr5.4:5945318-5945337 | None:intergenic | 55.0% | |
| TAGCAAGAGCCAAGGCAAGG+AGG | - | chr5.4:5944939-5944958 | None:intergenic | 55.0% | |
| TTGGTTGCAGCTCTCTCTGC+AGG | + | chr5.4:5944633-5944652 | MS.gene015491:CDS | 55.0% | |
| ! | GCAGAAGGCATACCGACAAC+GGG | - | chr5.4:5944979-5944998 | None:intergenic | 55.0% |
| !! | TTGAGCTGAGTTGATCCCGG+AGG | - | chr5.4:5945349-5945368 | None:intergenic | 55.0% |
| AGAGGCGGAGGCTCACTATC+AGG | - | chr5.4:5945324-5945343 | None:intergenic | 60.0% | |
| CAGGATCAGGGAGAACCCCT+AGG | - | chr5.4:5945305-5945324 | None:intergenic | 60.0% | |
| CTGCGCCTGAGGGATACCAA+AGG | - | chr5.4:5944223-5944242 | None:intergenic | 60.0% | |
| CTTTGGTATCCCTCAGGCGC+AGG | + | chr5.4:5944221-5944240 | MS.gene015491:intron | 60.0% | |
| GAGGATCAGGGGCGGTTCTA+AGG | + | chr5.4:5943894-5943913 | MS.gene015491:intron | 60.0% | |
| GCGCTACCAGTGTGCTAGCA+AGG | - | chr5.4:5943536-5943555 | None:intergenic | 60.0% | |
| ! | TGATAGTGAGCCTCCGCCTC+TGG | + | chr5.4:5945323-5945342 | MS.gene015491:intron | 60.0% |
| !! | ATCAGGGGCGGTTCTAAGGC+CGG | + | chr5.4:5943898-5943917 | MS.gene015491:intron | 60.0% |
| GGGACCATCCTCACCAGTGG+CGG | - | chr5.4:5944119-5944138 | None:intergenic | 65.0% | |
| TTGATCCCGGAGGCCAGAGG+CGG | - | chr5.4:5945339-5945358 | None:intergenic | 65.0% | |
| ! | GAGTTGATCCCGGAGGCCAG+AGG | - | chr5.4:5945342-5945361 | None:intergenic | 65.0% |
| !! | TCAGGGGCGGTTCTAAGGCC+GGG | + | chr5.4:5943899-5943918 | MS.gene015491:intron | 65.0% |
| GGCTCCGCCACTGGTGAGGA+TGG | + | chr5.4:5944112-5944131 | MS.gene015491:intron | 70.0% | |
| TCCTGGCTCCGCCACTGGTG+AGG | + | chr5.4:5944108-5944127 | MS.gene015491:intron | 70.0% | |
| ! | TCCTCACCAGTGGCGGAGCC+AGG | - | chr5.4:5944112-5944131 | None:intergenic | 70.0% |
| !! | GTTCTAAGGCCGGGCGAGCC+CGG | + | chr5.4:5943908-5943927 | MS.gene015491:intron | 70.0% |
| !! | TTCTAAGGCCGGGCGAGCCC+GGG | + | chr5.4:5943909-5943928 | MS.gene015491:intron | 70.0% |
| AGCCCGGGCATTCGCGGCTC+CGG | + | chr5.4:5943924-5943943 | MS.gene015491:intron | 75.0% | |
| AGCCTCCGCCTCTGGCCTCC+GGG | + | chr5.4:5945331-5945350 | MS.gene015491:intron | 75.0% | |
| ATCCCGGAGGCCAGAGGCGG+AGG | - | chr5.4:5945336-5945355 | None:intergenic | 75.0% | |
| GAGCCTCCGCCTCTGGCCTC+CGG | + | chr5.4:5945330-5945349 | MS.gene015491:intron | 75.0% | |
| ! | CGCGAATGCCCGGGCTCGCC+CGG | - | chr5.4:5943920-5943939 | None:intergenic | 80.0% |
| ! | CGGGCGAGCCCGGGCATTCG+CGG | + | chr5.4:5943918-5943937 | MS.gene015491:intron | 80.0% |
| ! | GGCCGGAGCCGCGAATGCCC+GGG | - | chr5.4:5943929-5943948 | None:intergenic | 80.0% |
| ! | GGGCCGGAGCCGCGAATGCC+CGG | - | chr5.4:5943930-5943949 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 5943465 | 5945638 | 5943465 | ID=MS.gene015491 |
| chr5.4 | mRNA | 5943465 | 5945638 | 5943465 | ID=MS.gene015491.t1;Parent=MS.gene015491 |
| chr5.4 | exon | 5943465 | 5943592 | 5943465 | ID=MS.gene015491.t1.exon1;Parent=MS.gene015491.t1 |
| chr5.4 | CDS | 5943465 | 5943592 | 5943465 | ID=cds.MS.gene015491.t1;Parent=MS.gene015491.t1 |
| chr5.4 | exon | 5943698 | 5943891 | 5943698 | ID=MS.gene015491.t1.exon2;Parent=MS.gene015491.t1 |
| chr5.4 | CDS | 5943698 | 5943891 | 5943698 | ID=cds.MS.gene015491.t1;Parent=MS.gene015491.t1 |
| chr5.4 | exon | 5944237 | 5944489 | 5944237 | ID=MS.gene015491.t1.exon3;Parent=MS.gene015491.t1 |
| chr5.4 | CDS | 5944237 | 5944489 | 5944237 | ID=cds.MS.gene015491.t1;Parent=MS.gene015491.t1 |
| chr5.4 | exon | 5944578 | 5944831 | 5944578 | ID=MS.gene015491.t1.exon4;Parent=MS.gene015491.t1 |
| chr5.4 | CDS | 5944578 | 5944831 | 5944578 | ID=cds.MS.gene015491.t1;Parent=MS.gene015491.t1 |
| chr5.4 | exon | 5944923 | 5945005 | 5944923 | ID=MS.gene015491.t1.exon5;Parent=MS.gene015491.t1 |
| chr5.4 | CDS | 5944923 | 5945005 | 5944923 | ID=cds.MS.gene015491.t1;Parent=MS.gene015491.t1 |
| chr5.4 | exon | 5945558 | 5945638 | 5945558 | ID=MS.gene015491.t1.exon6;Parent=MS.gene015491.t1 |
| chr5.4 | CDS | 5945558 | 5945638 | 5945558 | ID=cds.MS.gene015491.t1;Parent=MS.gene015491.t1 |
| Gene Sequence |
| Protein sequence |
