Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015970.t1 | XP_003588718.1 | 100 | 112 | 0 | 0 | 1 | 112 | 1 | 112 | 1.60E-55 | 226.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015970.t1 | F4JWS8 | 75.2 | 121 | 30 | 0 | 1 | 121 | 1 | 121 | 9.9e-46 | 184.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015970.t1 | B7FGY5 | 100.0 | 112 | 0 | 0 | 1 | 112 | 1 | 112 | 1.2e-55 | 226.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene015970 | MS.gene60265 | PPI |
MS.gene61682 | MS.gene015970 | PPI |
MS.gene51557 | MS.gene015970 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015970.t1 | MTR_1g011880 | 100.000 | 112 | 0 | 0 | 1 | 112 | 1 | 112 | 7.44e-79 | 232 |
MS.gene015970.t1 | MTR_1g011880 | 100.000 | 101 | 0 | 0 | 1 | 101 | 1 | 101 | 6.89e-71 | 211 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene015970.t1 | AT5G25450 | 75.207 | 121 | 30 | 0 | 1 | 121 | 1 | 121 | 2.60e-62 | 190 |
MS.gene015970.t1 | AT4G32470 | 76.786 | 112 | 26 | 0 | 1 | 112 | 1 | 112 | 1.05e-59 | 184 |
MS.gene015970.t1 | AT4G32470 | 77.000 | 100 | 23 | 0 | 1 | 100 | 1 | 100 | 2.26e-53 | 167 |
MS.gene015970.t1 | AT5G25450 | 64.463 | 121 | 27 | 1 | 1 | 121 | 1 | 105 | 2.51e-47 | 152 |
MS.gene015970.t1 | AT5G25450 | 75.294 | 85 | 21 | 0 | 1 | 85 | 1 | 85 | 1.01e-42 | 139 |
Find 58 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCTGAGCACCGGACGGTTTC+GGG | 0.195732 | 1.2:+9316060 | None:intergenic |
TGTGGTAGCTTCTATAGATT+TGG | 0.270022 | 1.2:+9319637 | None:intergenic |
GGCTGAGCACCGGACGGTTT+CGG | 0.270300 | 1.2:+9316059 | None:intergenic |
GTATTACGATTTGGATATTA+AGG | 0.274133 | 1.2:-9323781 | MS.gene015970:CDS |
AAACAAGACAGTGATTAATA+AGG | 0.287731 | 1.2:-9319681 | MS.gene015970:CDS |
ACCGTATTTGCGAAGACGTT+TGG | 0.293147 | 1.2:+9323917 | None:intergenic |
TTCACGTGGAATGTCTATTA+TGG | 0.303068 | 1.2:+9318644 | None:intergenic |
GGCTTAATTGCATATTTGAT+AGG | 0.330530 | 1.2:+9316037 | None:intergenic |
GTATCTTCCTGAGGATCTTC+AGG | 0.339636 | 1.2:-9323673 | MS.gene015970:intron |
GTATGATCCGTATTACGATT+TGG | 0.362212 | 1.2:-9323790 | MS.gene015970:CDS |
TCCAAACGTCTTCGCAAATA+CGG | 0.376472 | 1.2:-9323918 | MS.gene015970:intron |
AACAAGACAGTGATTAATAA+GGG | 0.409817 | 1.2:-9319680 | MS.gene015970:CDS |
CGAGCATCAACAACCTCCTT+TGG | 0.426514 | 1.2:+9323741 | None:intergenic |
ACCACAGGGTTACGAGCAGC+AGG | 0.439743 | 1.2:-9319620 | MS.gene015970:CDS |
CGAGCAGAGCGTGAAGCATT+GGG | 0.452428 | 1.2:-9320465 | MS.gene015970:CDS |
ACGAGCAGAGCGTGAAGCAT+TGG | 0.467463 | 1.2:-9320466 | MS.gene015970:CDS |
AGGAAGATACTCATGCTTCA+TGG | 0.469418 | 1.2:+9323686 | None:intergenic |
GTGGAATGTCTATTATGGTT+AGG | 0.469609 | 1.2:+9318649 | None:intergenic |
TTAATATCCAAATCGTAATA+CGG | 0.475035 | 1.2:+9323783 | None:intergenic |
AGGCAATGCAAACACCATTC+AGG | 0.479539 | 1.2:-9322561 | MS.gene015970:CDS |
GCTTAATTGCATATTTGATA+GGG | 0.487056 | 1.2:+9316038 | None:intergenic |
TGAAGTGAGGATCTTAAAGA+AGG | 0.499292 | 1.2:-9319732 | MS.gene015970:intron |
TTAAAGAAGGGAAGTATATG+TGG | 0.516331 | 1.2:-9319719 | MS.gene015970:CDS |
ATTTCGAGCCCGAAACCGTC+CGG | 0.523982 | 1.2:-9316068 | MS.gene015970:CDS |
ACCATTCAGGAGCTACCTTC+AGG | 0.525111 | 1.2:-9322548 | MS.gene015970:CDS |
TCCTGAAGGTAGCTCCTGAA+TGG | 0.529425 | 1.2:+9322547 | None:intergenic |
TGTCTATTATGGTTAGGAAG+TGG | 0.530262 | 1.2:+9318655 | None:intergenic |
GGCTTTGAATCGGCTTCCAA+AGG | 0.532273 | 1.2:-9323757 | MS.gene015970:CDS |
ATATTAAGGAGGCTTTGAAT+CGG | 0.539685 | 1.2:-9323767 | MS.gene015970:CDS |
AAACCAACCTGAAGATCCTC+AGG | 0.545207 | 1.2:+9323666 | None:intergenic |
AATGTAGGACATCCTTCTCA+TGG | 0.553249 | 1.2:+9318620 | None:intergenic |
ATGCCACCATTGCTGCCCTA+CGG | 0.556597 | 1.2:-9319595 | MS.gene015970:CDS |
TATTATGGTTAGGAAGTGGA+TGG | 0.560543 | 1.2:+9318659 | None:intergenic |
TTTGAATCGGCTTCCAAAGG+AGG | 0.563776 | 1.2:-9323754 | MS.gene015970:CDS |
TGTTAACCGTAGGGCAGCAA+TGG | 0.575960 | 1.2:+9319589 | None:intergenic |
AAATCTATAGAAGCTACCAC+AGG | 0.576803 | 1.2:-9319635 | MS.gene015970:CDS |
CGAACCTCTCTGTTAACCGT+AGG | 0.577545 | 1.2:+9319579 | None:intergenic |
TAACCGTAGGGCAGCAATGG+TGG | 0.583879 | 1.2:+9319592 | None:intergenic |
TTACGATTTGGATATTAAGG+AGG | 0.584001 | 1.2:-9323778 | MS.gene015970:CDS |
GTGGATGGCTTTGCTAATGT+AGG | 0.598569 | 1.2:+9318605 | None:intergenic |
GAAGTGAGGATCTTAAAGAA+GGG | 0.602165 | 1.2:-9319731 | MS.gene015970:intron |
ATACAAGAGCGACCGGTGGA+TGG | 0.605752 | 1.2:+9318590 | None:intergenic |
TAAGGGCAACATATTCTCGT+CGG | 0.612643 | 1.2:-9319663 | MS.gene015970:CDS |
GAACCTCTCTGTTAACCGTA+GGG | 0.612997 | 1.2:+9319580 | None:intergenic |
CTGCCCTACGGTTAACAGAG+AGG | 0.613622 | 1.2:-9319583 | MS.gene015970:intron |
ACATTAGCAAAGCCATCCAC+CGG | 0.617354 | 1.2:-9318602 | MS.gene015970:CDS |
TGTGGACATACAAGAGCGAC+CGG | 0.619301 | 1.2:+9318583 | None:intergenic |
TATTTGATAGGGCTGAGCAC+CGG | 0.626436 | 1.2:+9316049 | None:intergenic |
CAAAGGTCAGCATATCCTGA+AGG | 0.627878 | 1.2:+9322533 | None:intergenic |
TGATAGGGCTGAGCACCGGA+CGG | 0.635543 | 1.2:+9316053 | None:intergenic |
TTCCACGTGAATCCATGAGA+AGG | 0.637394 | 1.2:-9318632 | MS.gene015970:CDS |
GCAGAGCGTGAAGCATTGGG+AGG | 0.668632 | 1.2:-9320462 | MS.gene015970:intron |
ATCCTTCTCATGGATTCACG+TGG | 0.670042 | 1.2:+9318630 | None:intergenic |
CCCTGCTGCTCGTAACCCTG+TGG | 0.673021 | 1.2:+9319619 | None:intergenic |
GAAGCATGAGTATCTTCCTG+AGG | 0.684541 | 1.2:-9323682 | MS.gene015970:CDS |
AATCTATAGAAGCTACCACA+GGG | 0.688978 | 1.2:-9319634 | MS.gene015970:CDS |
CCACAGGGTTACGAGCAGCA+GGG | 0.702097 | 1.2:-9319619 | MS.gene015970:CDS |
GGACATACAAGAGCGACCGG+TGG | 0.707165 | 1.2:+9318586 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 9316040 | 9324012 | 9316040 | ID=MS.gene015970 |
chr1.2 | mRNA | 9316040 | 9324012 | 9316040 | ID=MS.gene015970.t1;Parent=MS.gene015970 |
chr1.2 | exon | 9323919 | 9324012 | 9323919 | ID=MS.gene015970.t1.exon1;Parent=MS.gene015970.t1 |
chr1.2 | CDS | 9323919 | 9324012 | 9323919 | ID=cds.MS.gene015970.t1;Parent=MS.gene015970.t1 |
chr1.2 | exon | 9323674 | 9323831 | 9323674 | ID=MS.gene015970.t1.exon2;Parent=MS.gene015970.t1 |
chr1.2 | CDS | 9323674 | 9323831 | 9323674 | ID=cds.MS.gene015970.t1;Parent=MS.gene015970.t1 |
chr1.2 | exon | 9322534 | 9322581 | 9322534 | ID=MS.gene015970.t1.exon3;Parent=MS.gene015970.t1 |
chr1.2 | CDS | 9322534 | 9322581 | 9322534 | ID=cds.MS.gene015970.t1;Parent=MS.gene015970.t1 |
chr1.2 | exon | 9320463 | 9320499 | 9320463 | ID=MS.gene015970.t1.exon4;Parent=MS.gene015970.t1 |
chr1.2 | CDS | 9320463 | 9320499 | 9320463 | ID=cds.MS.gene015970.t1;Parent=MS.gene015970.t1 |
chr1.2 | exon | 9319584 | 9319749 | 9319584 | ID=MS.gene015970.t1.exon5;Parent=MS.gene015970.t1 |
chr1.2 | CDS | 9319584 | 9319749 | 9319584 | ID=cds.MS.gene015970.t1;Parent=MS.gene015970.t1 |
chr1.2 | exon | 9318594 | 9318701 | 9318594 | ID=MS.gene015970.t1.exon6;Parent=MS.gene015970.t1 |
chr1.2 | CDS | 9318594 | 9318701 | 9318594 | ID=cds.MS.gene015970.t1;Parent=MS.gene015970.t1 |
chr1.2 | exon | 9316040 | 9316097 | 9316040 | ID=MS.gene015970.t1.exon7;Parent=MS.gene015970.t1 |
chr1.2 | CDS | 9316040 | 9316097 | 9316040 | ID=cds.MS.gene015970.t1;Parent=MS.gene015970.t1 |
Gene Sequence |
Protein sequence |