AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene016088

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene016088.t1 MTR_1g014070 97.569 617 15 0 1 617 1 617 0.0 1236
MS.gene016088.t1 MTR_5g015790 50.929 646 272 13 1 617 1 630 0.0 594
MS.gene016088.t1 MTR_1g106430 48.678 643 286 15 1 617 1 625 0.0 552
MS.gene016088.t1 MTR_5g032780 46.881 529 240 10 1 493 1 524 2.75e-152 453
MS.gene016088.t1 MTR_8g069330 41.129 620 303 13 1 582 1 596 3.22e-136 410
MS.gene016088.t1 MTR_4g134210 39.223 566 297 11 1 546 1 539 2.37e-134 406
MS.gene016088.t1 MTR_2g009340 38.078 541 274 9 6 492 19 552 9.97e-123 379
MS.gene016088.t1 MTR_4g093850 38.772 521 266 9 22 499 39 549 2.44e-122 377
MS.gene016088.t1 MTR_2g027410 36.266 557 313 9 1 548 1 524 4.84e-119 365
MS.gene016088.t1 MTR_2g018750 40.748 508 279 11 1 492 1 502 4.43e-116 359
MS.gene016088.t1 MTR_1g064360 37.984 516 271 11 1 496 1 487 4.84e-104 326
MS.gene016088.t1 MTR_5g016060 37.072 526 296 14 23 535 36 539 2.17e-102 324
MS.gene016088.t1 MTR_2g027410 36.157 484 268 8 74 548 1 452 3.37e-101 317
MS.gene016088.t1 MTR_8g090220 32.967 546 272 11 21 517 46 546 1.15e-100 320
MS.gene016088.t1 MTR_8g090220 34.064 502 253 9 21 484 46 507 2.68e-100 315
MS.gene016088.t1 MTR_1g094850 39.258 512 285 14 1 496 1 502 2.35e-98 313
MS.gene016088.t1 MTR_2g084595 34.927 481 289 6 25 487 21 495 1.84e-97 311
MS.gene016088.t1 MTR_4g022330 36.800 500 290 9 18 506 25 509 4.02e-97 310
MS.gene016088.t1 MTR_8g078900 32.843 612 358 14 22 585 15 621 6.95e-97 310
MS.gene016088.t1 MTR_4g093850 36.166 459 243 8 22 437 39 490 3.14e-96 305
MS.gene016088.t1 MTR_4g095430 34.991 543 313 13 24 546 10 532 1.65e-95 305
MS.gene016088.t1 MTR_8g078900 36.008 486 274 10 38 488 1 484 1.11e-92 298
MS.gene016088.t1 MTR_7g073980 32.958 622 360 15 19 609 25 620 3.32e-92 298
MS.gene016088.t1 MTR_2g048390 36.980 457 263 9 1 437 1 452 2.54e-90 287
MS.gene016088.t1 MTR_1g088885 36.076 474 280 7 25 488 34 494 1.26e-89 290
MS.gene016088.t1 MTR_8g078900 37.241 435 256 9 69 488 42 474 1.04e-86 283
MS.gene016088.t1 MTR_7g108290 34.490 490 294 10 25 502 34 508 7.06e-82 271
MS.gene016088.t1 MTR_3g062540 32.992 488 278 8 12 488 11 460 8.86e-80 263
MS.gene016088.t1 MTR_1g082690 31.677 483 274 8 28 501 59 494 5.58e-79 260
MS.gene016088.t1 MTR_2g084595 32.483 431 267 6 25 437 21 445 1.33e-75 248
MS.gene016088.t1 MTR_5g016060 36.180 445 249 14 104 535 3 425 9.92e-75 248
MS.gene016088.t1 MTR_5g075640 29.821 503 297 10 12 495 12 477 8.71e-73 244
MS.gene016088.t1 MTR_8g078900 33.038 451 265 10 22 437 15 463 3.69e-72 240
MS.gene016088.t1 MTR_3g062540 32.450 453 259 7 47 488 2 418 1.20e-69 235
MS.gene016088.t1 MTR_5g075640 29.487 468 276 9 47 495 2 434 2.68e-63 218
MS.gene016088.t1 MTR_8g078900 34.375 384 235 9 69 437 42 423 1.45e-62 213
MS.gene016088.t1 MTR_2g102730 40.484 289 140 7 213 488 24 293 1.39e-56 197
MS.gene016088.t1 MTR_4g011530 39.792 289 140 8 213 488 46 313 3.92e-53 188
MS.gene016088.t1 MTR_4g074190 26.682 446 281 11 69 492 3 424 1.21e-38 149
MS.gene016088.t1 MTR_1g035720 25.933 509 312 16 30 508 6 479 1.64e-38 149
MS.gene016088.t1 MTR_4g074190 26.682 446 281 11 69 492 49 470 1.80e-38 149
MS.gene016088.t1 MTR_4g045767 25.420 476 319 10 36 505 14 459 8.69e-38 147
MS.gene016088.t1 MTR_4g074190 25.641 390 246 10 69 437 49 415 1.31e-28 119
MS.gene016088.t1 MTR_1g105870 30.882 204 122 3 31 232 35 221 2.13e-25 106
MS.gene016088.t1 MTR_2g010890 25.641 390 250 9 93 474 1 358 7.48e-23 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene016088.t1 AT4G31820 57.797 590 188 13 1 581 1 538 0.0 650
MS.gene016088.t1 AT4G31820 56.611 537 172 13 54 581 1 485 0.0 572
MS.gene016088.t1 AT2G14820 53.106 499 222 4 1 493 1 493 7.42e-180 524
MS.gene016088.t1 AT2G14820 53.106 499 222 4 1 493 1 493 7.42e-180 524
MS.gene016088.t1 AT5G67440 47.107 605 271 11 1 597 1 564 2.50e-175 510
MS.gene016088.t1 AT5G67440 47.107 605 271 11 1 597 1 564 2.50e-175 510
MS.gene016088.t1 AT4G37590 46.555 595 247 16 1 573 1 546 4.93e-168 491
MS.gene016088.t1 AT2G23050 48.606 502 210 9 1 497 1 459 1.07e-157 461
MS.gene016088.t1 AT5G67440 45.390 564 259 11 42 597 5 527 1.41e-150 446
MS.gene016088.t1 AT1G67900 45.524 525 241 9 1 492 1 513 2.35e-142 427
MS.gene016088.t1 AT1G67900 45.524 525 241 9 1 492 1 513 2.35e-142 427
MS.gene016088.t1 AT1G67900 45.524 525 241 9 1 492 1 513 2.35e-142 427
MS.gene016088.t1 AT1G67900 45.524 525 241 9 1 492 1 513 2.35e-142 427
MS.gene016088.t1 AT1G67900 45.524 525 241 9 1 492 1 513 2.35e-142 427
MS.gene016088.t1 AT1G67900 45.524 525 241 9 1 492 1 513 2.35e-142 427
MS.gene016088.t1 AT3G26490 41.426 519 265 12 1 490 1 509 3.01e-124 379
MS.gene016088.t1 AT3G26490 41.426 519 265 12 1 490 1 509 3.01e-124 379
MS.gene016088.t1 AT3G26490 41.426 519 265 12 1 490 1 509 3.01e-124 379
MS.gene016088.t1 AT5G47800 38.264 507 285 6 1 499 1 487 2.99e-123 376
MS.gene016088.t1 AT5G47800 38.264 507 285 6 1 499 1 487 2.99e-123 376
MS.gene016088.t1 AT5G47800 38.264 507 285 6 1 499 1 487 2.99e-123 376
MS.gene016088.t1 AT5G47800 38.264 507 285 6 1 499 114 600 1.38e-121 375
MS.gene016088.t1 AT5G03250 39.038 520 283 11 1 496 1 510 4.90e-115 356
MS.gene016088.t1 AT2G23050 43.782 386 174 7 112 497 1 343 4.07e-105 322
MS.gene016088.t1 AT1G30440 35.922 515 304 8 1 492 1 512 1.12e-103 328
MS.gene016088.t1 AT3G26490 40.558 466 238 12 1 437 1 456 2.08e-102 320
MS.gene016088.t1 AT5G13600 37.383 535 296 14 1 512 1 519 5.62e-101 319
MS.gene016088.t1 AT5G48800 38.316 475 267 7 22 492 36 488 3.94e-97 310
MS.gene016088.t1 AT5G67385 36.786 473 271 9 24 488 22 474 1.13e-96 308
MS.gene016088.t1 AT3G44820 33.603 494 297 8 22 487 18 508 3.97e-91 295
MS.gene016088.t1 AT1G03010 35.863 527 288 14 12 511 18 521 1.27e-89 291
MS.gene016088.t1 AT5G66560 34.615 546 276 12 22 500 14 545 2.84e-89 291
MS.gene016088.t1 AT1G03010 35.938 512 280 13 25 511 7 495 7.49e-89 288
MS.gene016088.t1 AT1G03010 35.938 512 280 13 25 511 34 522 1.64e-88 288
MS.gene016088.t1 AT3G08660 33.450 571 313 12 19 567 26 551 3.99e-88 285
MS.gene016088.t1 AT5G10250 33.925 507 250 11 22 488 45 506 7.74e-88 286
MS.gene016088.t1 AT2G47860 37.344 482 262 11 25 488 35 494 2.21e-87 285
MS.gene016088.t1 AT3G08570 34.146 574 332 14 19 567 26 578 2.01e-86 282
MS.gene016088.t1 AT5G66560 34.717 530 265 12 38 500 1 516 6.35e-86 281
MS.gene016088.t1 AT5G67385 36.526 449 257 9 48 488 1 429 7.22e-86 279
MS.gene016088.t1 AT5G67385 36.526 449 257 9 48 488 1 429 7.22e-86 279
MS.gene016088.t1 AT5G67385 36.526 449 257 9 48 488 1 429 7.22e-86 279
MS.gene016088.t1 AT5G67385 36.526 449 257 9 48 488 1 429 7.22e-86 279
MS.gene016088.t1 AT5G10250 33.468 496 252 10 22 488 45 491 5.75e-85 278
MS.gene016088.t1 AT5G66560 37.363 455 248 10 69 500 66 506 3.80e-83 273
MS.gene016088.t1 AT3G50840 35.000 480 268 8 22 488 11 459 8.37e-83 271
MS.gene016088.t1 AT2G47860 35.644 505 262 12 25 488 35 517 2.88e-82 272
MS.gene016088.t1 AT2G30520 32.803 503 278 10 4 488 9 469 1.02e-80 266
MS.gene016088.t1 AT3G08660 33.080 526 286 11 64 567 10 491 2.08e-77 255
MS.gene016088.t1 AT3G49970 36.180 445 220 11 38 473 5 394 5.17e-76 251
MS.gene016088.t1 AT3G49970 36.180 445 220 11 38 473 5 394 5.17e-76 251
MS.gene016088.t1 AT3G50840 34.361 454 254 8 48 488 1 423 3.78e-73 244
MS.gene016088.t1 AT3G50840 34.361 454 254 8 48 488 1 423 3.78e-73 244
MS.gene016088.t1 AT5G03250 36.609 407 227 9 112 496 1 398 5.53e-73 243
MS.gene016088.t1 AT2G30520 33.043 460 250 9 47 488 2 421 2.23e-71 240
MS.gene016088.t1 AT2G30520 33.043 460 250 9 47 488 2 421 2.23e-71 240
MS.gene016088.t1 AT3G08660 34.434 424 239 10 19 437 26 415 1.90e-65 221
MS.gene016088.t1 AT2G47860 35.499 431 238 11 25 437 35 443 2.63e-65 221
MS.gene016088.t1 AT5G66560 32.083 480 248 11 22 437 14 479 3.13e-64 219
MS.gene016088.t1 AT5G64330 39.394 264 144 3 7 256 33 294 3.81e-62 218
MS.gene016088.t1 AT5G64330 37.959 245 132 5 271 499 373 613 3.67e-43 165
MS.gene016088.t1 AT5G64330 39.394 264 144 3 7 256 33 294 1.20e-61 218
MS.gene016088.t1 AT5G64330 37.959 245 132 5 271 499 373 613 3.78e-43 166
MS.gene016088.t1 AT2G47860 33.700 454 238 12 25 437 35 466 2.26e-60 208
MS.gene016088.t1 AT2G47860 35.443 395 218 10 112 488 1 376 2.66e-56 199
MS.gene016088.t1 AT2G47860 35.443 395 218 10 112 488 1 376 2.66e-56 199
MS.gene016088.t1 AT1G52770 37.288 295 147 6 213 488 28 303 1.88e-54 192
MS.gene016088.t1 AT5G64330 40.529 227 120 2 44 256 10 235 2.79e-53 192
MS.gene016088.t1 AT5G64330 37.959 245 132 5 271 499 314 554 1.39e-43 165
MS.gene016088.t1 AT5G48130 25.407 492 274 13 27 487 39 468 1.02e-52 191
MS.gene016088.t1 AT3G15570 34.783 299 153 7 213 488 29 308 3.48e-47 172
MS.gene016088.t1 AT3G19850 27.460 437 275 8 69 487 52 464 8.47e-47 173
MS.gene016088.t1 AT5G17580 27.484 473 305 10 23 488 16 457 1.30e-41 159
MS.gene016088.t1 AT5G17580 27.484 473 305 10 23 488 1 442 2.40e-41 158
MS.gene016088.t1 AT1G50280 27.804 428 277 8 69 482 18 427 1.07e-39 152
MS.gene016088.t1 AT1G50280 27.804 428 277 8 69 482 51 460 1.22e-39 152
MS.gene016088.t1 AT3G03510 30.000 420 224 15 77 488 4 361 7.63e-37 143
MS.gene016088.t1 AT3G22104 24.000 450 287 11 36 473 14 420 4.31e-32 130
MS.gene016088.t1 AT3G22104 23.117 385 243 9 99 473 4 345 2.32e-22 100
MS.gene016088.t1 AT3G22104 23.117 385 243 9 99 473 4 345 2.32e-22 100
MS.gene016088.t1 AT3G22104 23.117 385 243 9 99 473 4 345 2.32e-22 100

Find 124 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCCTCGTCTCCATTTATT+AGG 0.216595 1.2:+7949684 None:intergenic
TCTGAGGATCTAAAGATAAT+TGG 0.223450 1.2:-7951092 MS.gene016088:CDS
CAAAAGACATTCTATCTCTT+AGG 0.246837 1.2:-7949369 None:intergenic
CCTCCACATGCCCTAATAAA+TGG 0.253864 1.2:-7949695 MS.gene016088:CDS
GATATGAAAGATAAAGTATT+TGG 0.280957 1.2:-7950447 MS.gene016088:CDS
TGTCAAGGATTTACTGATTC+CGG 0.288586 1.2:-7950571 MS.gene016088:CDS
CTGATTCCGGCTAGGTCTCC+TGG 0.293524 1.2:-7950558 MS.gene016088:CDS
AATGATAACGGTGAAATCTA+AGG 0.298241 1.2:-7950868 MS.gene016088:CDS
TGCACATATTTCAAAGGCCT+TGG 0.314739 1.2:+7951319 None:intergenic
GGAGAATATTTGACAAGTTA+TGG 0.336159 1.2:-7949508 MS.gene016088:CDS
TACTACTTATGATATTGATT+TGG 0.339422 1.2:-7950532 MS.gene016088:CDS
AAAATGAAGTTTATGAAGTT+GGG 0.342765 1.2:-7953785 MS.gene016088:CDS
CTGTACAAACCGTCATGATT+TGG 0.348424 1.2:+7950285 None:intergenic
ACTATTTAAAGTGGCCATAC+TGG 0.349780 1.2:-7950661 MS.gene016088:CDS
CTTGGAGATACAAAATCTTC+TGG 0.359835 1.2:-7949407 MS.gene016088:CDS
AATAGGAGTTCAGAGGCTTC+AGG 0.361947 1.2:-7949458 MS.gene016088:CDS
CCATCAGATTGAAGTGCATC+AGG 0.365409 1.2:+7953755 None:intergenic
TTCCTCGTCTCCATTTATTA+GGG 0.365614 1.2:+7949685 None:intergenic
GCTGTTCATCAATTCTTCTC+TGG 0.372100 1.2:+7950620 None:intergenic
ATGACAGAGGATATTGATAA+AGG 0.389164 1.2:-7951218 MS.gene016088:CDS
GCCTGATTCTGTTGATGCAT+TGG 0.391893 1.2:-7950787 MS.gene016088:CDS
ACCAATGCATCAACAGAATC+AGG 0.394719 1.2:+7950786 None:intergenic
TAAGACCAAGTGACGTTTGC+CGG 0.402273 1.2:+7951029 None:intergenic
AATCTGATGGCAAATTTGTC+AGG 0.409140 1.2:-7953742 MS.gene016088:intron
GTTTCGTAAGAGTGTGAGAT+TGG 0.412767 1.2:-7949588 MS.gene016088:CDS
CTGAGGATCTAAAGATAATT+GGG 0.417356 1.2:-7951091 MS.gene016088:CDS
TGATTTGGTCTAGCAAAATC+TGG 0.421555 1.2:+7950300 None:intergenic
TTATGGAATGTTGGTAGTAA+AGG 0.422184 1.2:-7949491 MS.gene016088:CDS
ACAGATATTATCATAGCTAT+TGG 0.425143 1.2:-7951553 MS.gene016088:CDS
TATGGAATGTTGGTAGTAAA+GGG 0.426699 1.2:-7949490 MS.gene016088:CDS
TTCTTCTCTGGATGATTCAT+CGG 0.435084 1.2:+7950632 None:intergenic
CATCAAGTATCTTTCGTAGC+TGG 0.435226 1.2:-7951163 MS.gene016088:CDS
CGAGGAATGCGAGAAAACTC+TGG 0.444156 1.2:-7949669 MS.gene016088:CDS
GCACATATTTCAAAGGCCTT+GGG 0.445735 1.2:+7951320 None:intergenic
TAATTCAGATGAAATTTACT+TGG 0.448094 1.2:-7951360 MS.gene016088:CDS
ACGACTTGTTTGTCTGTTGA+GGG 0.448196 1.2:+7949631 None:intergenic
TTCATCGGCTTCAACCAGTA+TGG 0.453351 1.2:+7950647 None:intergenic
GCATGCAGTTGTTGCCGTCT+CGG 0.453505 1.2:-7949535 MS.gene016088:CDS
AAGTTGGTTGATAGTTATCT+TGG 0.460673 1.2:-7950384 MS.gene016088:CDS
CTTGCTGAAACTATTTAAAG+TGG 0.463625 1.2:-7950670 MS.gene016088:CDS
TCCGAAGGATTGGTGGGTTG+AGG 0.463763 1.2:-7950928 MS.gene016088:CDS
AAAAGACATTCTATCTCTTA+GGG 0.466446 1.2:-7949368 None:intergenic
TTTGACAAGTTATGGAATGT+TGG 0.466928 1.2:-7949500 MS.gene016088:CDS
TCCTCAACCCACCAATCCTT+CGG 0.471360 1.2:+7950927 None:intergenic
TACGAAAGATACTTGATGTA+AGG 0.472293 1.2:+7951168 None:intergenic
AACGACTTGTTTGTCTGTTG+AGG 0.472812 1.2:+7949630 None:intergenic
ATAGGAGTTCAGAGGCTTCA+GGG 0.474284 1.2:-7949457 MS.gene016088:CDS
GTTAGCAAATGCTCGGGCAC+TGG 0.475056 1.2:+7949730 None:intergenic
TTGAGTCTGTTCCGAAGGAT+TGG 0.477314 1.2:-7950938 MS.gene016088:CDS
CTGCTAAATCTCTTCTCCCT+TGG 0.477644 1.2:-7951115 MS.gene016088:CDS
GTAAAGGGCATGGAGAGAAT+AGG 0.477954 1.2:-7949475 MS.gene016088:CDS
TGTTTATTGCCGTGTGATAA+CGG 0.480390 1.2:-7950714 MS.gene016088:CDS
GAGCAATCGCTTACAGAAGT+TGG 0.481628 1.2:-7951402 MS.gene016088:CDS
TCAAAGGCCTTGGGTCCACC+AGG 0.488895 1.2:+7951329 None:intergenic
AGTCCAACTTCTGTAGTCCT+TGG 0.489120 1.2:-7949425 MS.gene016088:CDS
TTATAAACGCGTAATGATAA+CGG 0.489211 1.2:-7950880 MS.gene016088:CDS
TGCATGGAGGAACAAATCTC+TGG 0.493898 1.2:-7950751 MS.gene016088:CDS
TGAAAACCTATGCTGTTAGA+TGG 0.494881 1.2:-7950812 MS.gene016088:CDS
TTGATCCGGCAAACGTCACT+TGG 0.500431 1.2:-7951034 MS.gene016088:CDS
ATTTACTTGGACGATTTCCC+TGG 0.500638 1.2:-7951347 MS.gene016088:CDS
AGAATGGACGGTGTTGTGAT+TGG 0.502763 1.2:-7950843 MS.gene016088:CDS
TGATTCCGGCTAGGTCTCCT+GGG 0.505713 1.2:-7950557 MS.gene016088:CDS
GAAATTGACTGCTGATGCAT+CGG 0.507619 1.2:-7949831 MS.gene016088:CDS
AGCCATCGATATCTACTTGA+AGG 0.509362 1.2:-7950262 MS.gene016088:intron
TCTCCAAGGACTACAGAAGT+TGG 0.509793 1.2:+7949422 None:intergenic
AAACTAGAGAGGCTAAGATT+AGG 0.511940 1.2:+7950345 None:intergenic
AGTCTGTTCCGAAGGATTGG+TGG 0.513817 1.2:-7950935 MS.gene016088:CDS
ATCTTTAGATCCTCAGACCA+AGG 0.516375 1.2:+7951098 None:intergenic
TCCACTTCGAGTTGTAGTGC+AGG 0.516877 1.2:-7949783 MS.gene016088:CDS
TGGTTTCTGATGCTCATGCA+TGG 0.521841 1.2:-7950767 MS.gene016088:CDS
TTGTTTGTCTGTTGAGGGAA+TGG 0.522335 1.2:+7949636 None:intergenic
GGTGAAATCTAAGGGAAGAA+TGG 0.523387 1.2:-7950859 MS.gene016088:CDS
CTTACAGAAGTTGGTGTCAA+AGG 0.524081 1.2:-7951393 MS.gene016088:CDS
CGATTTCCCTGGTGGACCCA+AGG 0.529641 1.2:-7951336 MS.gene016088:CDS
ATCTCTTCTCCCTTGGTCTG+AGG 0.535395 1.2:-7951108 MS.gene016088:CDS
AGTTGTTGCCGTCTCGGTCG+AGG 0.536571 1.2:-7949529 MS.gene016088:CDS
TTGCCGTGTGATAACGGTGT+TGG 0.537879 1.2:-7950708 MS.gene016088:CDS
ACCTGCACTACAACTCGAAG+TGG 0.539338 1.2:+7949782 None:intergenic
CCTGATGCACTTCAATCTGA+TGG 0.542206 1.2:-7953755 MS.gene016088:CDS
GAACTTTGCACATATTTCAA+AGG 0.543529 1.2:+7951313 None:intergenic
ATATGTGCAAAGTTCTGCTA+TGG 0.544022 1.2:-7951305 MS.gene016088:CDS
TCTGAAAAGAAGAACATATG+TGG 0.548360 1.2:-7949869 MS.gene016088:CDS
GATTGCTCTTTGACAGTAGA+GGG 0.548395 1.2:+7951417 None:intergenic
TACTTGGACGATTTCCCTGG+TGG 0.549505 1.2:-7951344 MS.gene016088:CDS
GAAAATTGAGTCTGTTCCGA+AGG 0.556432 1.2:-7950943 MS.gene016088:CDS
GATATTGAATCTCGGCAAGT+TGG 0.559092 1.2:-7950400 MS.gene016088:CDS
ATGATAACGGTGAAATCTAA+GGG 0.563530 1.2:-7950867 MS.gene016088:CDS
GTCTGTTCCGAAGGATTGGT+GGG 0.564671 1.2:-7950934 MS.gene016088:CDS
TCTCCATTTATTAGGGCATG+TGG 0.566345 1.2:+7949692 None:intergenic
GGTTGAGGATATATGTGAGC+TGG 0.567054 1.2:-7950913 MS.gene016088:CDS
CAATATCCTCTGTCATCTCA+AGG 0.567324 1.2:+7951225 None:intergenic
ATTGCATGAAGCTTCTGTCA+AGG 0.573895 1.2:-7950586 MS.gene016088:CDS
AGGATTTACTGATTCCGGCT+AGG 0.574506 1.2:-7950566 MS.gene016088:CDS
AAGTATCTTTCGTAGCTGGA+AGG 0.582873 1.2:-7951159 MS.gene016088:CDS
GTGGACTGTTAGCAAATGCT+CGG 0.585051 1.2:+7949723 None:intergenic
AATATTCTCCTCGACCGAGA+CGG 0.585861 1.2:+7949521 None:intergenic
TACCTTCAAGTAGATATCGA+TGG 0.586908 1.2:+7950260 None:intergenic
TAGTTTCAGCAAGAAACTAC+AGG 0.589035 1.2:+7950680 None:intergenic
CGATTGCTCTTTGACAGTAG+AGG 0.595990 1.2:+7951416 None:intergenic
GAGGAATGCGAGAAAACTCT+GGG 0.599575 1.2:-7949668 MS.gene016088:CDS
TCTTTAGATCCTCAGACCAA+GGG 0.600214 1.2:+7951099 None:intergenic
GTAATCCCAGGAGACCTAGC+CGG 0.600747 1.2:+7950552 None:intergenic
CCATTTATTAGGGCATGTGG+AGG 0.601063 1.2:+7949695 None:intergenic
TCTGAATGCTTACAATGTTG+TGG 0.606892 1.2:-7951270 MS.gene016088:CDS
TGGACTGTTAGCAAATGCTC+GGG 0.608053 1.2:+7949724 None:intergenic
AATGTTGGTAGTAAAGGGCA+TGG 0.608411 1.2:-7949485 MS.gene016088:CDS
AATAGGGCGATATTGAATCT+CGG 0.610706 1.2:-7950408 MS.gene016088:CDS
ATATCATAAGTAGTAATCCC+AGG 0.618972 1.2:+7950540 None:intergenic
AGGCAACCATCTAACAGCAT+AGG 0.619442 1.2:+7950806 None:intergenic
ACAAATCAACAAAACTAGAG+AGG 0.619836 1.2:+7950334 None:intergenic
TGGAGAGAATAGGAGTTCAG+AGG 0.626635 1.2:-7949465 MS.gene016088:CDS
CAACCAACACCGTTATCACA+CGG 0.627146 1.2:+7950705 None:intergenic
TTTGCTAGACCAAATCATGA+CGG 0.635280 1.2:-7950294 MS.gene016088:CDS
AAATCTAAGGGAAGAATGGA+CGG 0.638803 1.2:-7950855 MS.gene016088:CDS
TGTGGCTGCTCGATGTGCAG+CGG 0.654801 1.2:-7951252 MS.gene016088:CDS
ACAGGTCGATAAAGTCGTTG+AGG 0.658797 1.2:-7950985 MS.gene016088:CDS
AGGGCATGTGGAGGATTGTG+TGG 0.662550 1.2:+7949704 None:intergenic
TGTAAAGTTTGACCTTCACA+AGG 0.678188 1.2:-7951527 MS.gene016088:intron
TGCCCTAATAAATGGAGACG+AGG 0.682274 1.2:-7949687 MS.gene016088:CDS
CAAAGGCCTTGGGTCCACCA+GGG 0.683009 1.2:+7951330 None:intergenic
GGACGGTGTTGTGATTGGTG+AGG 0.691521 1.2:-7950838 MS.gene016088:CDS
TTACAACCGAAAATTAACAC+AGG 0.700722 1.2:-7951003 MS.gene016088:CDS
GGAGTACCTTGAGATGACAG+AGG 0.738740 1.2:-7951231 MS.gene016088:CDS
TTTCTGATGCTCATGCATGG+AGG 0.746693 1.2:-7950764 MS.gene016088:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGATTATTTCATAAATATTA+TGG - chr1.2:7950591-7950610 MS.gene016088:CDS 10.0%
!! TATTAACATAAAAAAATGAT+TGG + chr1.2:7950946-7950965 None:intergenic 10.0%
!! AATTAAGTTAAAAAATCAAG+AGG - chr1.2:7950711-7950730 MS.gene016088:CDS 15.0%
!! ATGTTATTATTAACTGTAAA+GGG - chr1.2:7950273-7950292 MS.gene016088:CDS 15.0%
!! ATTAAGTTAAAAAATCAAGA+GGG - chr1.2:7950712-7950731 MS.gene016088:CDS 15.0%
!! GTAAAACTAATGATATATAT+AGG + chr1.2:7950508-7950527 None:intergenic 15.0%
!! TATGTTATTATTAACTGTAA+AGG - chr1.2:7950272-7950291 MS.gene016088:CDS 15.0%
!! TATTTCATAAATATTATGGT+TGG - chr1.2:7950595-7950614 MS.gene016088:CDS 15.0%
!! TGATTAATATCAACAATTAT+TGG + chr1.2:7950808-7950827 None:intergenic 15.0%
!!! AATATAAACTGAAATAGTTT+TGG - chr1.2:7949630-7949649 MS.gene016088:CDS 15.0%
!!! AGTTTTATTAAAAAATGCAA+TGG - chr1.2:7951313-7951332 MS.gene016088:CDS 15.0%
!!! CTTGATTTTTTAACTTAATT+TGG + chr1.2:7950711-7950730 None:intergenic 15.0%
!!! TGCAACTATTTTATTAAATA+AGG + chr1.2:7951001-7951020 None:intergenic 15.0%
!! ATATATTGAAACTATTTCAG+TGG + chr1.2:7950222-7950241 None:intergenic 20.0%
!! GTAGTGTACTATTAAATTAT+TGG - chr1.2:7950674-7950693 MS.gene016088:CDS 20.0%
!! TAATTCAGATGAAATTTACT+TGG - chr1.2:7951792-7951811 MS.gene016088:intron 20.0%
!! TTAATATCAACAATTATTGG+TGG + chr1.2:7950805-7950824 None:intergenic 20.0%
!!! AATGTTTTAAAAACCAAACA+TGG - chr1.2:7949815-7949834 MS.gene016088:CDS 20.0%
!!! ACTTTAAAAAGCTAGTATTT+TGG - chr1.2:7950834-7950853 MS.gene016088:CDS 20.0%
!!! GATATGAAAGATAAAGTATT+TGG - chr1.2:7952705-7952724 MS.gene016088:intron 20.0%
!!! GATTTTTTAACTTAATTTGG+AGG + chr1.2:7950708-7950727 None:intergenic 20.0%
!!! TACTACTTATGATATTGATT+TGG - chr1.2:7952620-7952639 MS.gene016088:intron 20.0%
!!! TATTACATTTTTCTATCACT+AGG + chr1.2:7951294-7951313 None:intergenic 20.0%
!!! TATTTGGTGAATCTATTTTA+GGG - chr1.2:7952721-7952740 MS.gene016088:intron 20.0%
!!! TGATTTTCTCAAATTATTAG+CGG - chr1.2:7950068-7950087 MS.gene016088:intron 20.0%
!!! TTATTTTCTCGAATTATTTC+AGG + chr1.2:7953025-7953044 None:intergenic 20.0%
! AAATAGTTGCAAGTATATGA+TGG - chr1.2:7951010-7951029 MS.gene016088:CDS 25.0%
! AATTCATTTCCAATTTATGC+AGG - chr1.2:7951555-7951574 MS.gene016088:CDS 25.0%
! ACAGATATTATCATAGCTAT+TGG - chr1.2:7951599-7951618 MS.gene016088:intron 25.0%
! ACATGAGAAGTAAAAATCAA+TGG + chr1.2:7951706-7951725 None:intergenic 25.0%
! ACATTGCTTTGTATATGTTT+CGG + chr1.2:7949800-7949819 None:intergenic 25.0%
! AGAAGAATTGCTTATTTAAC+AGG + chr1.2:7951683-7951702 None:intergenic 25.0%
! GCAACATAAAAAGATTCAAA+CGG + chr1.2:7949680-7949699 None:intergenic 25.0%
! TAACTTATACAAGGAAAGAT+GGG + chr1.2:7951518-7951537 None:intergenic 25.0%
! TACAAAGTGTAACTTATACA+AGG + chr1.2:7951527-7951546 None:intergenic 25.0%
! TATTAAGACAAAGAACAGAT+TGG + chr1.2:7953199-7953218 None:intergenic 25.0%
! TGAGAAAATCAAGTAATTCA+AGG + chr1.2:7950059-7950078 None:intergenic 25.0%
! TTATAAACGCGTAATGATAA+CGG - chr1.2:7952272-7952291 MS.gene016088:intron 25.0%
! TTGCATACAATGAGTTAAAT+GGG + chr1.2:7950195-7950214 None:intergenic 25.0%
! TTTAACAGGAAACTAATACA+AGG + chr1.2:7951669-7951688 None:intergenic 25.0%
! TTTGCATACAATGAGTTAAA+TGG + chr1.2:7950196-7950215 None:intergenic 25.0%
!! AGTTTCTGGAAAATAAATCA+CGG + chr1.2:7949736-7949755 None:intergenic 25.0%
!! TATTTTGTTAGTGTCATGTT+AGG + chr1.2:7952999-7953018 None:intergenic 25.0%
!! TTTCAGATTTTGTCAAACTT+GGG + chr1.2:7953270-7953289 None:intergenic 25.0%
!! TTTGTTATGACAGTAAATCA+CGG - chr1.2:7949703-7949722 MS.gene016088:CDS 25.0%
!! TTTTCAGATTTTGTCAAACT+TGG + chr1.2:7953271-7953290 None:intergenic 25.0%
!! TTTTTCTTTTTCTGTACTGT+TGG - chr1.2:7949540-7949559 MS.gene016088:CDS 25.0%
!!! ATAGTTTGCAAAGTCTTTTA+TGG - chr1.2:7950431-7950450 MS.gene016088:CDS 25.0%
!!! GTATTTGGTGAATCTATTTT+AGG - chr1.2:7952720-7952739 MS.gene016088:intron 25.0%
!!! TGAATCTATTTTAGGGAATA+GGG - chr1.2:7952728-7952747 MS.gene016088:intron 25.0%
!!! TGTTCTAAAATGTGATATAC+TGG + chr1.2:7953154-7953173 None:intergenic 25.0%
!!! TTTATTTTCCAGAAACTTTG+AGG - chr1.2:7949739-7949758 MS.gene016088:CDS 25.0%
AAAAAGATTCAAACGGTTAC+TGG + chr1.2:7949673-7949692 None:intergenic 30.0%
AACTTATACAAGGAAAGATG+GGG + chr1.2:7951517-7951536 None:intergenic 30.0%
ACAAATCAACAAAACTAGAG+AGG + chr1.2:7952821-7952840 None:intergenic 30.0%
ATATCATAAGTAGTAATCCC+AGG + chr1.2:7952615-7952634 None:intergenic 30.0%
ATCAAAAACTTCTGTTGATC+CGG - chr1.2:7952104-7952123 MS.gene016088:intron 30.0%
ATGACAGAGGATATTGATAA+AGG - chr1.2:7951934-7951953 MS.gene016088:intron 30.0%
CAATAAGTTTGTGAGAATCA+AGG + chr1.2:7949772-7949791 None:intergenic 30.0%
CTGAGGATCTAAAGATAATT+GGG - chr1.2:7952061-7952080 MS.gene016088:intron 30.0%
CTTGCTGAAACTATTTAAAG+TGG - chr1.2:7952482-7952501 MS.gene016088:intron 30.0%
GAACTTTGCACATATTTCAA+AGG + chr1.2:7951842-7951861 None:intergenic 30.0%
GAATCAAACTCAATACTTCA+GGG + chr1.2:7951272-7951291 None:intergenic 30.0%
GGAGAATATTTGACAAGTTA+TGG - chr1.2:7953644-7953663 MS.gene016088:intron 30.0%
GTAACTTATACAAGGAAAGA+TGG + chr1.2:7951519-7951538 None:intergenic 30.0%
TACGAAAGATACTTGATGTA+AGG + chr1.2:7951987-7952006 None:intergenic 30.0%
TCTGAAAAGAAGAACATATG+TGG - chr1.2:7953283-7953302 MS.gene016088:intron 30.0%
TCTGAGGATCTAAAGATAAT+TGG - chr1.2:7952060-7952079 MS.gene016088:intron 30.0%
TGATATGTACCTGCATAAAT+TGG + chr1.2:7951567-7951586 None:intergenic 30.0%
TTACAACCGAAAATTAACAC+AGG - chr1.2:7952149-7952168 MS.gene016088:intron 30.0%
TTTGACAAGTTATGGAATGT+TGG - chr1.2:7953652-7953671 MS.gene016088:intron 30.0%
! AAAGAAAAAGCGTGATATTG+AGG - chr1.2:7952677-7952696 MS.gene016088:intron 30.0%
! AACAGAAGTTTTTGATGCTA+TGG + chr1.2:7952100-7952119 None:intergenic 30.0%
! ACATGCATCTTAATACCTTT+TGG - chr1.2:7951379-7951398 MS.gene016088:CDS 30.0%
! AGAATGTCTTTTGTGTCTTA+AGG + chr1.2:7953776-7953795 None:intergenic 30.0%
! ATTTGATCAAGTTTTGCGTT+TGG - chr1.2:7951157-7951176 MS.gene016088:CDS 30.0%
! GTAATTATATGTGTCGATGT+TGG + chr1.2:7950037-7950056 None:intergenic 30.0%
! GTGATTTTGCAAAAGCTATA+AGG - chr1.2:7949874-7949893 MS.gene016088:CDS 30.0%
! TATCGACCTGTGTTAATTTT+CGG + chr1.2:7952158-7952177 None:intergenic 30.0%
! TGTAGCACATGATTTTTAAC+AGG + chr1.2:7950631-7950650 None:intergenic 30.0%
!! AAGTTGGTTGATAGTTATCT+TGG - chr1.2:7952768-7952787 MS.gene016088:intron 30.0%
!! AATGATAACGGTGAAATCTA+AGG - chr1.2:7952284-7952303 MS.gene016088:intron 30.0%
!! ATGATAACGGTGAAATCTAA+GGG - chr1.2:7952285-7952304 MS.gene016088:intron 30.0%
!! GTGAATCTATTTTAGGGAAT+AGG - chr1.2:7952727-7952746 MS.gene016088:intron 30.0%
!! TATGGAATGTTGGTAGTAAA+GGG - chr1.2:7953662-7953681 MS.gene016088:intron 30.0%
!! TTATGGAATGTTGGTAGTAA+AGG - chr1.2:7953661-7953680 MS.gene016088:intron 30.0%
!!! ACTGAAATAGTTTTGGTGTT+TGG - chr1.2:7949637-7949656 MS.gene016088:CDS 30.0%
!!! ATTTTTTGTCTGTGAAGCAT+TGG - chr1.2:7952959-7952978 MS.gene016088:intron 30.0%
AAACAGTGTGTATGTATAGG+TGG - chr1.2:7950380-7950399 MS.gene016088:CDS 35.0%
AAACTAGAGAGGCTAAGATT+AGG + chr1.2:7952810-7952829 None:intergenic 35.0%
AAATCTAAGGGAAGAATGGA+CGG - chr1.2:7952297-7952316 MS.gene016088:intron 35.0%
AAGATGCCAGCTATGAAATA+CGG + chr1.2:7950129-7950148 None:intergenic 35.0%
AATAGGGCGATATTGAATCT+CGG - chr1.2:7952744-7952763 MS.gene016088:intron 35.0%
AATCTGATGGCAAATTTGTC+AGG - chr1.2:7949410-7949429 MS.gene016088:CDS 35.0%
ACACTAATAGTTTACCACCA+GGG - chr1.2:7951205-7951224 MS.gene016088:CDS 35.0%
ACCAGAAACTCACAATTTGA+AGG + chr1.2:7950346-7950365 None:intergenic 35.0%
ACCTATACATACACACTGTT+TGG + chr1.2:7950381-7950400 None:intergenic 35.0%
AGACATGCTTAACAAAGCAT+TGG + chr1.2:7950751-7950770 None:intergenic 35.0%
AGAGAGAGAGGTTTAATTGA+AGG - chr1.2:7950312-7950331 MS.gene016088:CDS 35.0%
AGTAGCAAAAATAGCAGAAG+TGG - chr1.2:7953595-7953614 MS.gene016088:intron 35.0%
ATATGTGCAAAGTTCTGCTA+TGG - chr1.2:7951847-7951866 MS.gene016088:intron 35.0%
ATTCCTCGTCTCCATTTATT+AGG + chr1.2:7953471-7953490 None:intergenic 35.0%
ATTTGCAGACCCTACAAAAA+TGG + chr1.2:7950876-7950895 None:intergenic 35.0%
CTACACATGTATTCCACATT+TGG - chr1.2:7950646-7950665 MS.gene016088:CDS 35.0%
CTTGGAGATACAAAATCTTC+TGG - chr1.2:7953745-7953764 MS.gene016088:CDS 35.0%
GATTAGTAATGTCCCAATGT+CGG - chr1.2:7950005-7950024 MS.gene016088:intron 35.0%
GGAATCAAACTCAATACTTC+AGG + chr1.2:7951273-7951292 None:intergenic 35.0%
TACACTAATAGTTTACCACC+AGG - chr1.2:7951204-7951223 MS.gene016088:CDS 35.0%
TACCTTCAAGTAGATATCGA+TGG + chr1.2:7952895-7952914 None:intergenic 35.0%
TAGTTTCAGCAAGAAACTAC+AGG + chr1.2:7952475-7952494 None:intergenic 35.0%
TCCAAACAGTGTGTATGTAT+AGG - chr1.2:7950377-7950396 MS.gene016088:CDS 35.0%
TCTCAAATTATTAGCGGTGT+CGG - chr1.2:7950074-7950093 MS.gene016088:intron 35.0%
TCTGAATGCTTACAATGTTG+TGG - chr1.2:7951882-7951901 MS.gene016088:intron 35.0%
TGAAAACCTATGCTGTTAGA+TGG - chr1.2:7952340-7952359 MS.gene016088:intron 35.0%
TGTAAAGTTTGACCTTCACA+AGG - chr1.2:7951625-7951644 MS.gene016088:intron 35.0%
TGTTTATTGCCGTGTGATAA+CGG - chr1.2:7952438-7952457 MS.gene016088:intron 35.0%
TTCCTCGTCTCCATTTATTA+GGG + chr1.2:7953470-7953489 None:intergenic 35.0%
TTCTTCTCTGGATGATTCAT+CGG + chr1.2:7952523-7952542 None:intergenic 35.0%
TTTGCTAGACCAAATCATGA+CGG - chr1.2:7952858-7952877 MS.gene016088:intron 35.0%
! AAAAAGTACACACCTTGTGA+AGG + chr1.2:7951640-7951659 None:intergenic 35.0%
! ACTATTTAAAGTGGCCATAC+TGG - chr1.2:7952491-7952510 MS.gene016088:intron 35.0%
! CAGAAGATTTTGTATCTCCA+AGG + chr1.2:7953747-7953766 None:intergenic 35.0%
! CATTTGCGTGAATCATTTTC+AGG - chr1.2:7953240-7953259 MS.gene016088:intron 35.0%
! GTTAAATGGGTTTCTCTTGA+AGG + chr1.2:7950182-7950201 None:intergenic 35.0%
! TGTTTTTCACCACATTCACA+TGG + chr1.2:7951362-7951381 None:intergenic 35.0%
! TTTTAGCATGTGAGTTTCAC+TGG - chr1.2:7950529-7950548 MS.gene016088:CDS 35.0%
!! AAGGTAAGAATTTGCTACCT+TGG - chr1.2:7952909-7952928 MS.gene016088:intron 35.0%
!! ATTTTCCAGAAACTTTGAGG+TGG - chr1.2:7949742-7949761 MS.gene016088:CDS 35.0%
!! TGATTTGGTCTAGCAAAATC+TGG + chr1.2:7952855-7952874 None:intergenic 35.0%
!! TGTCAAGGATTTACTGATTC+CGG - chr1.2:7952581-7952600 MS.gene016088:intron 35.0%
!!! TGCAGTTAGCCATTTTTGTA+GGG - chr1.2:7950864-7950883 MS.gene016088:CDS 35.0%
AAGAAGTGAAAACACCTCCA+AGG + chr1.2:7952929-7952948 None:intergenic 40.0%
AAGTATCTTTCGTAGCTGGA+AGG - chr1.2:7951993-7952012 MS.gene016088:intron 40.0%
ACAATTACCCCACACAATGT+AGG + chr1.2:7951462-7951481 None:intergenic 40.0%
ACCAATGCATCAACAGAATC+AGG + chr1.2:7952369-7952388 None:intergenic 40.0%
AGCCATCGATATCTACTTGA+AGG - chr1.2:7952890-7952909 MS.gene016088:intron 40.0%
ATCTTTAGATCCTCAGACCA+AGG + chr1.2:7952057-7952076 None:intergenic 40.0%
ATTGCATGAAGCTTCTGTCA+AGG - chr1.2:7952566-7952585 MS.gene016088:intron 40.0%
ATTGGGACATTACTAATCCG+AGG + chr1.2:7950003-7950022 None:intergenic 40.0%
ATTTACTTGGACGATTTCCC+TGG - chr1.2:7951805-7951824 MS.gene016088:intron 40.0%
ATTTGCATGCCTACATTGTG+TGG - chr1.2:7951450-7951469 MS.gene016088:intron 40.0%
CAATATCCTCTGTCATCTCA+AGG + chr1.2:7951930-7951949 None:intergenic 40.0%
CATCAAGTATCTTTCGTAGC+TGG - chr1.2:7951989-7952008 MS.gene016088:intron 40.0%
CCAGCTATGAAATACGGATA+CGG + chr1.2:7950123-7950142 None:intergenic 40.0%
CTACAAAAATGGCTAACTGC+AGG + chr1.2:7950865-7950884 None:intergenic 40.0%
CTGTACAAACCGTCATGATT+TGG + chr1.2:7952870-7952889 None:intergenic 40.0%
GAAAATTGAGTCTGTTCCGA+AGG - chr1.2:7952209-7952228 MS.gene016088:intron 40.0%
GAAACTCACAATTTGAAGGC+TGG + chr1.2:7950342-7950361 None:intergenic 40.0%
GAAATTGACTGCTGATGCAT+CGG - chr1.2:7953321-7953340 MS.gene016088:intron 40.0%
GAGAGAGGTTTAATTGAAGG+TGG - chr1.2:7950315-7950334 MS.gene016088:CDS 40.0%
GATATTGAATCTCGGCAAGT+TGG - chr1.2:7952752-7952771 MS.gene016088:intron 40.0%
GATTGCTCTTTGACAGTAGA+GGG + chr1.2:7951738-7951757 None:intergenic 40.0%
GCAACTGAAATTCAGCCAAA+AGG + chr1.2:7951397-7951416 None:intergenic 40.0%
GCACATATTTCAAAGGCCTT+GGG + chr1.2:7951835-7951854 None:intergenic 40.0%
GCCTTCAAATTGTGAGTTTC+TGG - chr1.2:7950342-7950361 MS.gene016088:CDS 40.0%
GCTGTTCATCAATTCTTCTC+TGG + chr1.2:7952535-7952554 None:intergenic 40.0%
GGTGAAATCTAAGGGAAGAA+TGG - chr1.2:7952293-7952312 MS.gene016088:intron 40.0%
GTAAACCACCTCAAAGTTTC+TGG + chr1.2:7949750-7949769 None:intergenic 40.0%
GTGATGTATCCATGTGAATG+TGG - chr1.2:7951350-7951369 MS.gene016088:CDS 40.0%
GTGTGTATGTATAGGTGGTA+TGG - chr1.2:7950385-7950404 MS.gene016088:CDS 40.0%
TACACTACACTGACCAAATG+TGG + chr1.2:7950662-7950681 None:intergenic 40.0%
TCTCCATTTATTAGGGCATG+TGG + chr1.2:7953463-7953482 None:intergenic 40.0%
TCTTTAGATCCTCAGACCAA+GGG + chr1.2:7952056-7952075 None:intergenic 40.0%
TGCACATATTTCAAAGGCCT+TGG + chr1.2:7951836-7951855 None:intergenic 40.0%
TTGTTTGTCTGTTGAGGGAA+TGG + chr1.2:7953519-7953538 None:intergenic 40.0%
TTTGCATGCCTACATTGTGT+GGG - chr1.2:7951451-7951470 MS.gene016088:intron 40.0%
! AACGACTTGTTTGTCTGTTG+AGG + chr1.2:7953525-7953544 None:intergenic 40.0%
! ACGACTTGTTTGTCTGTTGA+GGG + chr1.2:7953524-7953543 None:intergenic 40.0%
! ATGTCTTCCACAGAAAGTGT+CGG - chr1.2:7953072-7953091 MS.gene016088:intron 40.0%
! GTTTCGTAAGAGTGTGAGAT+TGG - chr1.2:7953564-7953583 MS.gene016088:intron 40.0%
! TAGTTGTGCAAGCATTGTTC+AGG + chr1.2:7953131-7953150 None:intergenic 40.0%
!! AATGTTGGTAGTAAAGGGCA+TGG - chr1.2:7953667-7953686 MS.gene016088:intron 40.0%
!! CTTACAGAAGTTGGTGTCAA+AGG - chr1.2:7951759-7951778 MS.gene016088:intron 40.0%
!! GTAAGAATTTGCTACCTTGG+AGG - chr1.2:7952912-7952931 MS.gene016088:intron 40.0%
!!! CTGCAGTTAGCCATTTTTGT+AGG - chr1.2:7950863-7950882 MS.gene016088:CDS 40.0%
AATAGGAGTTCAGAGGCTTC+AGG - chr1.2:7953694-7953713 MS.gene016088:intron 45.0%
AATATTCTCCTCGACCGAGA+CGG + chr1.2:7953634-7953653 None:intergenic 45.0%
ACAGGTCGATAAAGTCGTTG+AGG - chr1.2:7952167-7952186 MS.gene016088:intron 45.0%
AGGCAACCATCTAACAGCAT+AGG + chr1.2:7952349-7952368 None:intergenic 45.0%
AGTCCAACTTCTGTAGTCCT+TGG - chr1.2:7953727-7953746 MS.gene016088:intron 45.0%
ATAGGAGTTCAGAGGCTTCA+GGG - chr1.2:7953695-7953714 MS.gene016088:intron 45.0%
ATCGAAGCACAAACACTCCT+CGG - chr1.2:7949983-7950002 MS.gene016088:intron 45.0%
CAACCAACACCGTTATCACA+CGG + chr1.2:7952450-7952469 None:intergenic 45.0%
CAACTACTTTCACTACACCC+TGG + chr1.2:7951225-7951244 None:intergenic 45.0%
CAGGGTGTAGTGAAAGTAGT+TGG - chr1.2:7951223-7951242 MS.gene016088:CDS 45.0%
CCATCAGATTGAAGTGCATC+AGG + chr1.2:7949400-7949419 None:intergenic 45.0%
CCATTTATTAGGGCATGTGG+AGG + chr1.2:7953460-7953479 None:intergenic 45.0%
CCGTATCCGTATTTCATAGC+TGG - chr1.2:7950120-7950139 MS.gene016088:intron 45.0%
CCTCCACATGCCCTAATAAA+TGG - chr1.2:7953457-7953476 MS.gene016088:intron 45.0%
CCTGATGCACTTCAATCTGA+TGG - chr1.2:7949397-7949416 MS.gene016088:CDS 45.0%
CGATTGCTCTTTGACAGTAG+AGG + chr1.2:7951739-7951758 None:intergenic 45.0%
CTGCTAAATCTCTTCTCCCT+TGG - chr1.2:7952037-7952056 MS.gene016088:intron 45.0%
GAGCAATCGCTTACAGAAGT+TGG - chr1.2:7951750-7951769 MS.gene016088:intron 45.0%
GAGGAATGCGAGAAAACTCT+GGG - chr1.2:7953484-7953503 MS.gene016088:intron 45.0%
GATAGGATGTCTGCTAGGTT+CGG + chr1.2:7949966-7949985 None:intergenic 45.0%
GCCTGATTCTGTTGATGCAT+TGG - chr1.2:7952365-7952384 MS.gene016088:intron 45.0%
GGTTGAGGATATATGTGAGC+TGG - chr1.2:7952239-7952258 MS.gene016088:intron 45.0%
TAAGACCAAGTGACGTTTGC+CGG + chr1.2:7952126-7952145 None:intergenic 45.0%
TCTCCAAGGACTACAGAAGT+TGG + chr1.2:7953733-7953752 None:intergenic 45.0%
TGAAATACGGATACGGACAC+CGG + chr1.2:7950116-7950135 None:intergenic 45.0%
TGCATGGAGGAACAAATCTC+TGG - chr1.2:7952401-7952420 MS.gene016088:intron 45.0%
TGCCCTAATAAATGGAGACG+AGG - chr1.2:7953465-7953484 MS.gene016088:intron 45.0%
TGGACTGTTAGCAAATGCTC+GGG + chr1.2:7953431-7953450 None:intergenic 45.0%
TGGAGAGAATAGGAGTTCAG+AGG - chr1.2:7953687-7953706 MS.gene016088:intron 45.0%
TGGTTTCTGATGCTCATGCA+TGG - chr1.2:7952385-7952404 MS.gene016088:intron 45.0%
TTGAGTCTGTTCCGAAGGAT+TGG - chr1.2:7952214-7952233 MS.gene016088:intron 45.0%
TTGCATGCCTACATTGTGTG+GGG - chr1.2:7951452-7951471 MS.gene016088:intron 45.0%
TTTCTGATGCTCATGCATGG+AGG - chr1.2:7952388-7952407 MS.gene016088:intron 45.0%
! GTAAAGGGCATGGAGAGAAT+AGG - chr1.2:7953677-7953696 MS.gene016088:intron 45.0%
! GTGGACTGTTAGCAAATGCT+CGG + chr1.2:7953432-7953451 None:intergenic 45.0%
!! AGAATGGACGGTGTTGTGAT+TGG - chr1.2:7952309-7952328 MS.gene016088:intron 45.0%
!! AGGAGTGTTTGTGCTTCGAT+AGG + chr1.2:7949983-7950002 None:intergenic 45.0%
!! AGGATTTACTGATTCCGGCT+AGG - chr1.2:7952586-7952605 MS.gene016088:intron 45.0%
!! TATAGCACCGACACTTTCTG+TGG + chr1.2:7953082-7953101 None:intergenic 45.0%
!! TGAGTTTCTGGTTGAGCTTG+TGG - chr1.2:7950354-7950373 MS.gene016088:CDS 45.0%
!! TTCATCGGCTTCAACCAGTA+TGG + chr1.2:7952508-7952527 None:intergenic 45.0%
ACCAAACATGGTACCGCGTT+AGG - chr1.2:7949827-7949846 MS.gene016088:CDS 50.0%
ACCTAACGCGGTACCATGTT+TGG + chr1.2:7949831-7949850 None:intergenic 50.0%
ACCTGCACTACAACTCGAAG+TGG + chr1.2:7953373-7953392 None:intergenic 50.0%
AGAGTCTGAGAGAGAGAGAG+AGG - chr1.2:7950300-7950319 MS.gene016088:CDS 50.0%
AGTCTGTTCCGAAGGATTGG+TGG - chr1.2:7952217-7952236 MS.gene016088:intron 50.0%
ATCTCTTCTCCCTTGGTCTG+AGG - chr1.2:7952044-7952063 MS.gene016088:intron 50.0%
ATGTTGGACACGACCGACAT+TGG + chr1.2:7950021-7950040 None:intergenic 50.0%
CGAGGAATGCGAGAAAACTC+TGG - chr1.2:7953483-7953502 MS.gene016088:intron 50.0%
CTACTTTCACTACACCCTGG+TGG + chr1.2:7951222-7951241 None:intergenic 50.0%
GCTTCGATAGGATGTCTGCT+AGG + chr1.2:7949971-7949990 None:intergenic 50.0%
TACTTGGACGATTTCCCTGG+TGG - chr1.2:7951808-7951827 MS.gene016088:intron 50.0%
TCCTCAACCCACCAATCCTT+CGG + chr1.2:7952228-7952247 None:intergenic 50.0%
TGTTGGACACGACCGACATT+GGG + chr1.2:7950020-7950039 None:intergenic 50.0%
TTGATCCGGCAAACGTCACT+TGG - chr1.2:7952118-7952137 MS.gene016088:intron 50.0%
! AGTTGGTGCGCATGGTATGT+GGG - chr1.2:7951240-7951259 MS.gene016088:CDS 50.0%
! GGAGTACCTTGAGATGACAG+AGG - chr1.2:7951921-7951940 MS.gene016088:intron 50.0%
! GTCTGTTCCGAAGGATTGGT+GGG - chr1.2:7952218-7952237 MS.gene016088:intron 50.0%
! GTGAAAGTAGTTGGTGCGCA+TGG - chr1.2:7951232-7951251 MS.gene016088:CDS 50.0%
! TAGTTGGTGCGCATGGTATG+TGG - chr1.2:7951239-7951258 MS.gene016088:CDS 50.0%
!! TTGCCGTGTGATAACGGTGT+TGG - chr1.2:7952444-7952463 MS.gene016088:intron 50.0%
ACTGCTAGCCACCGTGATTC+CGG + chr1.2:7949856-7949875 None:intergenic 55.0%
AGGGCATGTGGAGGATTGTG+TGG + chr1.2:7953451-7953470 None:intergenic 55.0%
GCATGCAGTTGTTGCCGTCT+CGG - chr1.2:7953617-7953636 MS.gene016088:intron 55.0%
GTAATCCCAGGAGACCTAGC+CGG + chr1.2:7952603-7952622 None:intergenic 55.0%
GTGATTCCGGCAACCTAACG+CGG + chr1.2:7949843-7949862 None:intergenic 55.0%
GTTAGCAAATGCTCGGGCAC+TGG + chr1.2:7953425-7953444 None:intergenic 55.0%
GTTGGTGCGCATGGTATGTG+GGG - chr1.2:7951241-7951260 MS.gene016088:CDS 55.0%
TGATTCCGGCTAGGTCTCCT+GGG - chr1.2:7952595-7952614 MS.gene016088:intron 55.0%
! ATGGTACCGCGTTAGGTTGC+CGG - chr1.2:7949834-7949853 MS.gene016088:CDS 55.0%
! GCGTTAGGTTGCCGGAATCA+CGG - chr1.2:7949842-7949861 MS.gene016088:CDS 55.0%
! TTAGGTTGCCGGAATCACGG+TGG - chr1.2:7949845-7949864 MS.gene016088:CDS 55.0%
!! GGACGGTGTTGTGATTGGTG+AGG - chr1.2:7952314-7952333 MS.gene016088:intron 55.0%
!! TCCGAAGGATTGGTGGGTTG+AGG - chr1.2:7952224-7952243 MS.gene016088:intron 55.0%
AGTTGTTGCCGTCTCGGTCG+AGG - chr1.2:7953623-7953642 MS.gene016088:intron 60.0%
CAAAGGCCTTGGGTCCACCA+GGG + chr1.2:7951825-7951844 None:intergenic 60.0%
CTGATTCCGGCTAGGTCTCC+TGG - chr1.2:7952594-7952613 MS.gene016088:intron 60.0%
TCAAAGGCCTTGGGTCCACC+AGG + chr1.2:7951826-7951845 None:intergenic 60.0%
TGTGGCTGCTCGATGTGCAG+CGG - chr1.2:7951900-7951919 MS.gene016088:intron 60.0%
! CGATTTCCCTGGTGGACCCA+AGG - chr1.2:7951816-7951835 MS.gene016088:intron 60.0%
CGGCGTCTCAGTGTCGTCTC+CGG - chr1.2:7950094-7950113 MS.gene016088:intron 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 7949370 7953804 7949370 ID=MS.gene016088
chr1.2 mRNA 7949370 7953804 7949370 ID=MS.gene016088.t1;Parent=MS.gene016088
chr1.2 exon 7953743 7953804 7953743 ID=MS.gene016088.t1.exon1;Parent=MS.gene016088.t1
chr1.2 CDS 7953743 7953804 7953743 ID=cds.MS.gene016088.t1;Parent=MS.gene016088.t1
chr1.2 exon 7951528 7951597 7951528 ID=MS.gene016088.t1.exon2;Parent=MS.gene016088.t1
chr1.2 CDS 7951528 7951597 7951528 ID=cds.MS.gene016088.t1;Parent=MS.gene016088.t1
chr1.2 exon 7950263 7951441 7950263 ID=MS.gene016088.t1.exon3;Parent=MS.gene016088.t1
chr1.2 CDS 7950263 7951441 7950263 ID=cds.MS.gene016088.t1;Parent=MS.gene016088.t1
chr1.2 exon 7949370 7949912 7949370 ID=MS.gene016088.t1.exon4;Parent=MS.gene016088.t1
chr1.2 CDS 7949370 7949912 7949370 ID=cds.MS.gene016088.t1;Parent=MS.gene016088.t1
Gene Sequence

>MS.gene016088

ATGAAGTTTATGAAGTTGGGTTCGAAGCCTGATGCACTTCAATCTGATGGCAAATTTGTCAGGTTAGTTTTATGTTCTTCTCTTCTCTTTTGTTTTTTTTTTTCTTTCTTGTTTTCTATTAATAACTTTACTTTCTTGTTTCTTTAGTTCTTCTATTTCATGTGTGTTTTTTTTTCTTTTTCTGTACTGTTGGTGTTTTCTTACAGTTAAATAGTAGTTAAATGTGTGCTAGTTTGTTTTTAACTGTTTTTCTGTTACTGAATATAAACTGAAATAGTTTTGGTGTTTGGTGAGTCACTGCCAGTAACCGTTTGAATCTTTTTATGTTGCATGTTTGTTATGACAGTAAATCACGGTGAACGACCGTGATTTATTTTCCAGAAACTTTGAGGTGGTTTACCTTGATTCTCACAAACTTATTGTGATACCGAAACATATACAAAGCAATGTTTTAAAAACCAAACATGGTACCGCGTTAGGTTGCCGGAATCACGGTGGCTAGCAGTGATTTTGCAAAAGCTATAAGGTGATTCGTCGTGATTCTGACAATCATTGTGATGATGCAAAATATGCACAAAACATTGTTTTAAAAACCGAACCTAGCAGACATCCTATCGAAGCACAAACACTCCTCGGATTAGTAATGTCCCAATGTCGGTCGTGTCCAACATCGACACATATAATTACCTTGAATTACTTGATTTTCTCAAATTATTAGCGGTGTCGGCGTCTCAGTGTCGTCTCCGGTGTCCGTATCCGTATTTCATAGCTGGCATCTTTAATGCTGCTATTCGAGCATTCAATTTAAGCCTTCAAGAGAAACCCATTTAACTCATTGTATGCAAATTACCACTGAAATAGTTTCAATATATTCTATTTTGTTAAAAAAGAAATTATTATTCTATGTTATTATTAACTGTAAAGGGAGAAAGAGTCTGAGAGAGAGAGAGAGGTTTAATTGAAGGTGGTCCAGCCTTCAAATTGTGAGTTTCTGGTTGAGCTTGTGGTCCAAACAGTGTGTATGTATAGGTGGTATGGACTGCTCAGCATTTAAAGTCATGATAGTTTGCAAAGTCTTTTATGGAACAAATATTAATCGTTATACTATAATAATAATTATTCTTTATATGTTTTTCCTATATATATCATTAGTTTTACTTTTTAGCATGTGAGTTTCACTGGAGTGCTCAGATTATCGCTATCAACTTTTATAATGTGTATAGATTATTTCATAAATATTATGGTTGGTACTTTTCAGCCTGTTAAAAATCATGTGCTACACATGTATTCCACATTTGGTCAGTGTAGTGTACTATTAAATTATTGGATTTGACTCCTCCAAATTAAGTTAAAAAATCAAGAGGGTTATTTCAACACACCAATGCTTTGTTAAGCATGTCTATTATGTAATAAATATCTACTATTGATTAATCCACCAATAATTGTTGATATTAATCATTTTACACTTTAAAAAGCTAGTATTTTGGATGTGCCTGCAGTTAGCCATTTTTGTAGGGTCTGCAAATATTCTTTATCTTATATTATGTGTCTCATTTGTAATATTTTTTTGTTTCCAATCATTTTTTTATGTTAATATAGTTACATTTATTACTTTTTATCAATGTTATCCTTATTTAATAAAATAGTTGCAAGTATATGATGGACAAATAATAAATGATGTATTATTTTGCATTGAAAATTGATATTACTTCTTATGAAGTGTGCGAGACATATAATATGAGACGAAGATACTAATTTTTAAAGATGTTACTTCTTACTTTTTTGTCATTTGATCAAGTTTTGCGTTTGGAACTATTTAGTTGCAGCTAAGATGTACACTAATAGTTTACCACCAGGGTGTAGTGAAAGTAGTTGGTGCGCATGGTATGTGGGGTTAAACCCTGAAGTATTGAGTTTGATTCCTAGTGATAGAAAAATGTAATAGTTTTATTAAAAAATGCAATGGTTTTGTCACACGATGTGATGTATCCATGTGAATGTGGTGAAAAACATGCATCTTAATACCTTTTGGCTGAATTTCAGTTGCTTATTGCGTATTGACTTTGCGCTGTGACTTGAAATTTGCATGCCTACATTGTGTGGGGTAATTGTATTTTGTGATGAAAGCTTAGTCTTCTATCATTCCCCATCTTTCCTTGTATAAGTTACACTTTGTAAACTAAACAATTCATTTCCAATTTATGCAGGTACATATCATCTGAATTAGCTACAGATATTATCATAGCTATTGGTGATGTAAAGTTTGACCTTCACAAGGTGTGTACTTTTTAAGCTTCCTTGTATTAGTTTCCTGTTAAATAAGCAATTCTTCTCCATTGATTTTTACTTCTCATGTGTTGCAGTTCCCTCTACTGTCAAAGAGCAATCGCTTACAGAAGTTGGTGTCAAAGGCTAACGAAGATAATTCAGATGAAATTTACTTGGACGATTTCCCTGGTGGACCCAAGGCCTTTGAAATATGTGCAAAGTTCTGCTATGGAATGACTGTGACTCTGAATGCTTACAATGTTGTGGCTGCTCGATGTGCAGCGGAGTACCTTGAGATGACAGAGGATATTGATAAAGGAAATTTGATTTTTAAAATTGATGTGTTCCTTACATCAAGTATCTTTCGTAGCTGGAAGGATTCTATAATTGTTCTTCAAACTGCTAAATCTCTTCTCCCTTGGTCTGAGGATCTAAAGATAATTGGGAGATGCATAGATTCCATAGCATCAAAAACTTCTGTTGATCCGGCAAACGTCACTTGGTCTTACACTTACAACCGAAAATTAACACAGGTCGATAAAGTCGTTGAGGACAAGATAACATTGAAAGAGAAAATTGAGTCTGTTCCGAAGGATTGGTGGGTTGAGGATATATGTGAGCTGGACATTGATCTTTATAAACGCGTAATGATAACGGTGAAATCTAAGGGAAGAATGGACGGTGTTGTGATTGGTGAGGCGCTGAAAACCTATGCTGTTAGATGGTTGCCTGATTCTGTTGATGCATTGGTTTCTGATGCTCATGCATGGAGGAACAAATCTCTGGTAGAAACAATTGTGTGTTTATTGCCGTGTGATAACGGTGTTGGTTGTTCCTGTAGTTTCTTGCTGAAACTATTTAAAGTGGCCATACTGGTTGAAGCCGATGAATCATCCAGAGAAGAATTGATGAACAGCATCAGCTTAAAATTGCATGAAGCTTCTGTCAAGGATTTACTGATTCCGGCTAGGTCTCCTGGGATTACTACTTATGATATTGATTTGGTGCAAGATCTTTTGAATCGATACATGACTAACGAAAAGAAAAAGCGTGATATTGAGGTTACAGATATGAAAGATAAAGTATTTGGTGAATCTATTTTAGGGAATAGGGCGATATTGAATCTCGGCAAGTTGGTTGATAGTTATCTTGGAGAAATTGCACATGATCCTAATCTTAGCCTCTCTAGTTTTGTTGATTTGTCAGAGTCAATTCCAGATTTTGCTAGACCAAATCATGACGGTTTGTACAGAGCCATCGATATCTACTTGAAGGTAAGAATTTGCTACCTTGGAGGTGTTTTCACTTCTTTTTCTGTTATATTTTTTGTCTGTGAAGCATTGGCATAGATACAAACTCCTAACATGACACTAACAAAATAACACCTGAAATAATTCGAGAAAATAAATTAATTTAATATAATCAGATGTGCAAATGTCTTCCACAGAAAGTGTCGGTGCTATATATGTTTTTTTTATTACTAGTTTTTGCCTGAACAATGCTTGCACAACTACCAGTATATCACATTTTAGAACACTAGCATTTTTCTATTTCTGCACCAATCTGTTCTTTGTCTTAATAACGTTAATATTTAATAATATTCATTTGCGTGAATCATTTTCAGGAACACCCAAGTTTGACAAAATCTGAAAAGAAGAACATATGTGGACTGATGAATGTCAAGAAATTGACTGCTGATGCATCGGCGCATGCTGCACAGAACGAACGTCTTCCACTTCGAGTTGTAGTGCAGGTTCTGTATTTTGAACAAGTTAGAGCTGCAGCCAGTGCCCGAGCATTTGCTAACAGTCCACACAATCCTCCACATGCCCTAATAAATGGAGACGAGGAATGCGAGAAAACTCTGGGAGTGAGCTGCCATTCCCTCAACAGACAAACAAGTCGTTTGAAGATTAAAGACGATGAGTTTCGTAAGAGTGTGAGATTGGATAAAAAGAGTAGCAAAAATAGCAGAAGTGGCATGCAGTTGTTGCCGTCTCGGTCGAGGAGAATATTTGACAAGTTATGGAATGTTGGTAGTAAAGGGCATGGAGAGAATAGGAGTTCAGAGGCTTCAGGGAGTTCTAATAGTCCAACTTCTGTAGTCCTTGGAGATACAAAATCTTCTGGTTCATCCTTAAGACACAAAAGACATTCTATCTCTTAG
Protein sequence

>MS.gene016088.t1

MKFMKLGSKPDALQSDGKFVRYISSELATDIIIAIGDVKFDLHKFPLLSKSNRLQKLVSKANEDNSDEIYLDDFPGGPKAFEICAKFCYGMTVTLNAYNVVAARCAAEYLEMTEDIDKGNLIFKIDVFLTSSIFRSWKDSIIVLQTAKSLLPWSEDLKIIGRCIDSIASKTSVDPANVTWSYTYNRKLTQVDKVVEDKITLKEKIESVPKDWWVEDICELDIDLYKRVMITVKSKGRMDGVVIGEALKTYAVRWLPDSVDALVSDAHAWRNKSLVETIVCLLPCDNGVGCSCSFLLKLFKVAILVEADESSREELMNSISLKLHEASVKDLLIPARSPGITTYDIDLVQDLLNRYMTNEKKKRDIEVTDMKDKVFGESILGNRAILNLGKLVDSYLGEIAHDPNLSLSSFVDLSESIPDFARPNHDGLYRAIDIYLKEHPSLTKSEKKNICGLMNVKKLTADASAHAAQNERLPLRVVVQVLYFEQVRAAASARAFANSPHNPPHALINGDEECEKTLGVSCHSLNRQTSRLKIKDDEFRKSVRLDKKSSKNSRSGMQLLPSRSRRIFDKLWNVGSKGHGENRSSEASGSSNSPTSVVLGDTKSSGSSLRHKRHSIS