AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene060275


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060275.t1 MTR_1g106430 98.560 625 9 0 1 625 1 625 0.0 1263
MS.gene060275.t1 MTR_5g015790 62.166 637 222 9 1 625 1 630 0.0 746
MS.gene060275.t1 MTR_1g014070 55.397 491 211 6 1 487 1 487 0.0 537
MS.gene060275.t1 MTR_5g032780 43.358 542 267 7 1 507 1 537 1.98e-145 436
MS.gene060275.t1 MTR_8g069330 42.289 629 281 16 1 588 1 588 1.44e-137 414
MS.gene060275.t1 MTR_4g134210 37.097 558 307 9 1 541 1 531 7.05e-123 377
MS.gene060275.t1 MTR_2g009340 37.542 594 308 15 5 546 23 605 1.34e-120 373
MS.gene060275.t1 MTR_4g093850 37.828 534 285 8 5 497 23 550 3.73e-119 369
MS.gene060275.t1 MTR_2g027410 36.811 508 274 7 1 496 1 473 1.58e-113 351
MS.gene060275.t1 MTR_2g018750 34.345 626 360 13 1 608 1 593 1.14e-108 340
MS.gene060275.t1 MTR_1g064360 35.439 570 311 14 1 546 1 537 9.36e-106 331
MS.gene060275.t1 MTR_5g016060 39.024 492 260 13 25 499 37 505 8.86e-105 330
MS.gene060275.t1 MTR_2g084595 34.622 543 311 10 13 528 10 535 2.22e-97 311
MS.gene060275.t1 MTR_8g090220 33.925 507 248 12 18 481 42 504 3.18e-96 305
MS.gene060275.t1 MTR_8g090220 31.904 583 282 15 18 546 42 563 3.80e-96 308
MS.gene060275.t1 MTR_4g022330 35.581 534 318 10 23 546 29 546 9.59e-96 306
MS.gene060275.t1 MTR_4g095430 36.660 491 280 9 25 499 10 485 8.90e-95 303
MS.gene060275.t1 MTR_1g094850 36.614 508 296 13 1 492 1 498 1.13e-94 303
MS.gene060275.t1 MTR_2g027410 36.636 434 230 6 75 496 1 401 1.33e-93 297
MS.gene060275.t1 MTR_1g088885 35.185 540 303 11 26 549 34 542 4.39e-93 300
MS.gene060275.t1 MTR_4g093850 35.950 484 263 8 5 447 23 500 6.98e-93 296
MS.gene060275.t1 MTR_8g078900 36.542 509 271 13 23 488 15 514 1.37e-91 297
MS.gene060275.t1 MTR_2g048390 38.043 460 254 8 1 437 1 452 5.15e-90 286
MS.gene060275.t1 MTR_7g108290 35.009 537 319 11 26 546 34 556 1.04e-87 287
MS.gene060275.t1 MTR_8g078900 36.660 491 259 13 41 488 3 484 6.73e-87 283
MS.gene060275.t1 MTR_7g073980 35.081 496 285 11 18 496 23 498 1.03e-84 278
MS.gene060275.t1 MTR_8g078900 37.104 442 246 11 70 488 42 474 3.21e-82 271
MS.gene060275.t1 MTR_3g062540 34.440 482 266 10 25 493 21 465 6.57e-82 269
MS.gene060275.t1 MTR_5g075640 32.193 497 280 8 25 499 22 483 5.46e-79 261
MS.gene060275.t1 MTR_1g082690 28.909 550 311 11 11 546 43 526 2.75e-78 258
MS.gene060275.t1 MTR_2g084595 33.556 450 260 8 13 437 10 445 4.40e-75 247
MS.gene060275.t1 MTR_5g016060 38.107 412 215 13 105 499 3 391 2.21e-74 247
MS.gene060275.t1 MTR_3g062540 33.987 459 253 10 48 493 2 423 3.73e-73 244
MS.gene060275.t1 MTR_5g075640 31.435 474 268 8 48 499 2 440 2.56e-70 237
MS.gene060275.t1 MTR_8g078900 34.498 458 248 13 23 437 15 463 2.58e-68 230
MS.gene060275.t1 MTR_2g102730 39.617 313 152 6 213 506 24 318 1.25e-59 205
MS.gene060275.t1 MTR_8g078900 34.783 391 223 11 70 437 42 423 2.75e-59 204
MS.gene060275.t1 MTR_4g011530 33.659 410 229 9 207 605 40 417 1.60e-57 200
MS.gene060275.t1 MTR_4g045767 28.256 453 286 13 74 518 52 473 8.87e-41 156
MS.gene060275.t1 MTR_4g074190 26.884 491 310 14 29 493 4 471 1.80e-40 155
MS.gene060275.t1 MTR_4g074190 26.517 445 284 11 70 493 3 425 3.71e-38 148
MS.gene060275.t1 MTR_1g035720 27.495 491 282 17 31 486 6 457 1.33e-37 147
MS.gene060275.t1 MTR_4g074190 26.667 435 270 14 29 437 4 415 6.01e-32 129
MS.gene060275.t1 MTR_2g010890 27.907 387 242 12 96 475 3 359 1.58e-28 119
MS.gene060275.t1 MTR_1g105870 29.500 200 123 3 32 229 35 218 5.82e-23 99.4
MS.gene060275.t1 MTR_2g048375 49.254 67 32 1 454 518 1 67 8.52e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060275.t1 AT2G14820 61.551 593 207 8 1 584 1 581 0.0 726
MS.gene060275.t1 AT2G14820 61.551 593 207 8 1 584 1 581 0.0 726
MS.gene060275.t1 AT4G37590 50.163 612 228 14 1 594 1 553 0.0 551
MS.gene060275.t1 AT5G67440 49.758 619 243 14 1 608 1 562 0.0 536
MS.gene060275.t1 AT5G67440 49.758 619 243 14 1 608 1 562 0.0 536
MS.gene060275.t1 AT2G23050 56.225 498 170 9 1 493 1 455 0.0 524
MS.gene060275.t1 AT4G31820 50.101 495 221 7 1 492 1 472 1.63e-161 475
MS.gene060275.t1 AT5G67440 48.180 577 232 13 43 608 5 525 3.03e-161 473
MS.gene060275.t1 AT1G67900 42.883 548 265 10 1 512 1 536 1.64e-137 415
MS.gene060275.t1 AT1G67900 42.883 548 265 10 1 512 1 536 1.64e-137 415
MS.gene060275.t1 AT1G67900 42.883 548 265 10 1 512 1 536 1.64e-137 415
MS.gene060275.t1 AT1G67900 42.883 548 265 10 1 512 1 536 1.64e-137 415
MS.gene060275.t1 AT1G67900 42.883 548 265 10 1 512 1 536 1.64e-137 415
MS.gene060275.t1 AT1G67900 42.883 548 265 10 1 512 1 536 1.64e-137 415
MS.gene060275.t1 AT4G31820 48.655 446 204 6 55 497 1 424 2.53e-136 408
MS.gene060275.t1 AT2G23050 53.018 381 137 6 113 493 1 339 1.89e-126 377
MS.gene060275.t1 AT3G26490 40.421 522 272 9 1 493 1 512 4.47e-122 374
MS.gene060275.t1 AT3G26490 40.421 522 272 9 1 493 1 512 4.47e-122 374
MS.gene060275.t1 AT3G26490 40.421 522 272 9 1 493 1 512 4.47e-122 374
MS.gene060275.t1 AT5G47800 39.034 497 269 8 1 486 1 474 9.53e-121 370
MS.gene060275.t1 AT5G47800 39.034 497 269 8 1 486 1 474 9.53e-121 370
MS.gene060275.t1 AT5G47800 39.034 497 269 8 1 486 1 474 9.53e-121 370
MS.gene060275.t1 AT5G47800 39.034 497 269 8 1 486 114 587 3.85e-119 369
MS.gene060275.t1 AT5G03250 36.411 574 318 15 1 547 1 554 2.08e-108 339
MS.gene060275.t1 AT5G13600 38.327 514 278 15 1 492 1 497 2.11e-105 331
MS.gene060275.t1 AT1G30440 37.931 522 284 12 1 492 1 512 4.96e-104 330
MS.gene060275.t1 AT3G26490 39.056 466 245 9 1 437 1 456 9.60e-100 313
MS.gene060275.t1 AT5G67385 37.728 493 275 10 7 488 3 474 8.94e-98 311
MS.gene060275.t1 AT3G44820 34.489 519 302 9 8 494 5 517 4.83e-94 303
MS.gene060275.t1 AT1G03010 36.170 564 303 15 18 546 22 563 2.26e-93 301
MS.gene060275.t1 AT1G03010 36.594 552 297 14 26 546 7 536 2.79e-93 300
MS.gene060275.t1 AT1G03010 36.511 556 300 14 22 546 29 562 7.12e-93 300
MS.gene060275.t1 AT5G48800 34.522 533 315 9 23 546 36 543 9.99e-93 298
MS.gene060275.t1 AT2G47860 33.877 552 309 12 22 546 31 553 2.60e-88 288
MS.gene060275.t1 AT5G66560 33.511 564 285 14 23 509 14 564 3.82e-88 288
MS.gene060275.t1 AT5G10250 34.043 517 257 12 23 499 45 517 1.11e-87 285
MS.gene060275.t1 AT5G67385 38.000 450 248 9 49 488 1 429 3.36e-87 282
MS.gene060275.t1 AT5G67385 38.000 450 248 9 49 488 1 429 3.36e-87 282
MS.gene060275.t1 AT5G67385 38.000 450 248 9 49 488 1 429 3.36e-87 282
MS.gene060275.t1 AT5G67385 38.000 450 248 9 49 488 1 429 3.36e-87 282
MS.gene060275.t1 AT3G08660 36.089 496 269 14 8 496 21 475 4.09e-87 283
MS.gene060275.t1 AT5G66560 33.700 546 272 14 41 509 3 535 7.04e-85 278
MS.gene060275.t1 AT5G10250 34.190 506 256 12 23 499 45 502 2.05e-84 276
MS.gene060275.t1 AT5G66560 35.654 474 259 12 69 509 65 525 1.07e-83 275
MS.gene060275.t1 AT2G30520 34.100 478 266 10 25 488 27 469 1.25e-83 274
MS.gene060275.t1 AT2G47860 32.522 575 309 13 22 546 31 576 5.42e-83 274
MS.gene060275.t1 AT3G08570 34.927 481 277 11 24 488 30 490 1.91e-82 271
MS.gene060275.t1 AT3G49970 38.549 441 210 12 41 473 7 394 3.72e-81 265
MS.gene060275.t1 AT3G49970 38.549 441 210 12 41 473 7 394 3.72e-81 265
MS.gene060275.t1 AT3G50840 34.845 485 261 10 23 488 11 459 1.97e-77 257
MS.gene060275.t1 AT3G08660 36.636 434 235 12 70 496 15 415 8.84e-77 254
MS.gene060275.t1 AT2G30520 34.066 455 251 10 48 488 2 421 9.82e-76 252
MS.gene060275.t1 AT2G30520 34.066 455 251 10 48 488 2 421 9.82e-76 252
MS.gene060275.t1 AT5G03250 34.573 457 262 12 113 547 1 442 5.35e-71 237
MS.gene060275.t1 AT3G50840 34.205 459 247 10 49 488 1 423 3.54e-68 231
MS.gene060275.t1 AT3G50840 34.205 459 247 10 49 488 1 423 3.54e-68 231
MS.gene060275.t1 AT2G47860 33.864 440 240 10 22 437 31 443 1.77e-67 227
MS.gene060275.t1 AT3G08660 34.633 436 238 13 8 437 21 415 1.38e-66 224
MS.gene060275.t1 AT5G66560 32.568 479 246 13 23 437 14 479 1.91e-64 220
MS.gene060275.t1 AT2G47860 32.181 463 240 11 22 437 31 466 1.66e-62 214
MS.gene060275.t1 AT2G47860 32.755 461 257 11 113 546 1 435 6.27e-59 206
MS.gene060275.t1 AT2G47860 32.755 461 257 11 113 546 1 435 6.27e-59 206
MS.gene060275.t1 AT5G64330 38.376 271 145 4 7 260 33 298 6.61e-56 201
MS.gene060275.t1 AT5G64330 41.772 237 115 4 271 488 373 605 7.31e-51 187
MS.gene060275.t1 AT5G64330 38.376 271 145 4 7 260 33 298 2.08e-55 201
MS.gene060275.t1 AT5G64330 41.772 237 115 4 271 488 373 605 8.25e-51 188
MS.gene060275.t1 AT1G52770 37.458 299 151 4 213 493 28 308 7.70e-54 191
MS.gene060275.t1 AT5G64330 42.308 234 118 3 271 488 314 546 2.17e-51 187
MS.gene060275.t1 AT5G64330 37.759 241 129 4 38 260 2 239 3.47e-46 172
MS.gene060275.t1 AT5G48130 26.210 599 376 18 28 608 39 589 3.29e-48 179
MS.gene060275.t1 AT3G15570 35.235 298 153 4 213 488 29 308 4.77e-48 175
MS.gene060275.t1 AT5G17580 27.254 488 312 14 11 488 3 457 1.11e-41 159
MS.gene060275.t1 AT3G19850 26.484 438 277 11 70 487 52 464 2.94e-40 155
MS.gene060275.t1 AT5G17580 27.557 479 296 14 24 488 1 442 3.71e-40 154
MS.gene060275.t1 AT3G03510 27.404 416 235 12 80 488 6 361 4.40e-35 138
MS.gene060275.t1 AT1G50280 26.105 475 295 15 37 482 13 460 1.04e-33 135
MS.gene060275.t1 AT1G50280 26.364 440 273 14 67 482 15 427 1.02e-32 132
MS.gene060275.t1 AT3G22104 24.835 455 293 12 29 473 5 420 2.89e-31 128
MS.gene060275.t1 AT3G22104 23.499 383 243 9 100 473 4 345 2.64e-22 100
MS.gene060275.t1 AT3G22104 23.499 383 243 9 100 473 4 345 2.64e-22 100
MS.gene060275.t1 AT3G22104 23.499 383 243 9 100 473 4 345 2.64e-22 100
MS.gene060275.t1 AT3G49900 27.682 289 157 12 279 547 126 382 3.95e-14 75.9
MS.gene060275.t1 AT3G49900 27.397 292 157 13 279 547 126 385 2.27e-12 70.1

Find 135 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTGAATTCCTCCTATTTC+TGG 0.150173 1.2:-79394563 None:intergenic
ATCATACCCTTGCTGAAATT+TGG 0.196113 1.2:-79393321 None:intergenic
CGTCTCATGATGGCCTTTAC+AGG 0.230035 1.2:+79393823 MS.gene060275:CDS
GGTGTAGATTTAACTTCTTC+AGG 0.238087 1.2:-79394538 None:intergenic
AAATCTGACAATGGTAAATT+AGG 0.245080 1.2:-79393762 None:intergenic
AACATGGATAAGGCTGTTAT+TGG 0.275085 1.2:+79394400 MS.gene060275:CDS
ATTCAATCTAACGATGTAAT+TGG 0.286357 1.2:+79393264 MS.gene060275:CDS
TTCGAGTTCTAACTCCATTC+TGG 0.292794 1.2:-79393152 None:intergenic
TTGATTCCTTTAGCTATGTC+TGG 0.324835 1.2:-79394205 None:intergenic
CAGTGTTTCGTGTAGGTTCT+TGG 0.339564 1.2:+79393416 MS.gene060275:CDS
GGGGACAGCTGAGGAATTAA+AGG 0.351547 1.2:+79394300 MS.gene060275:CDS
TCTGTAAGCATAAGCTTTCA+AGG 0.351574 1.2:-79393292 None:intergenic
AATCTACACCATCCAGAAAT+AGG 0.361267 1.2:+79394551 MS.gene060275:CDS
CCATCAGTCTGAAATGTATC+TGG 0.381210 1.2:-79391450 None:intergenic
ATAACAGCCTTATCCATGTT+TGG 0.388738 1.2:-79394397 None:intergenic
GCTCCATCCGTGTCATATTC+CGG 0.403601 1.2:-79394277 None:intergenic
ATCGTTAGATTGAATTTCCT+TGG 0.406677 1.2:-79393256 None:intergenic
GAAGAGTATATGCCAGCTAA+TGG 0.411454 1.2:+79394054 MS.gene060275:CDS
TCACAATTCCGAGATTGAAT+TGG 0.413050 1.2:+79393629 MS.gene060275:CDS
TGTAGTCTGAAGAAGGATAA+TGG 0.416115 1.2:-79392977 None:intergenic
ACACGAAACACTGCCTTTCT+CGG 0.422062 1.2:-79393406 None:intergenic
TCTTCAACCCACCAGTCCTT+TGG 0.426430 1.2:-79393180 None:intergenic
AAACATCGATCTTGAAAAGA+AGG 0.427976 1.2:-79392918 None:intergenic
GTCAGAACCGCTGCGTCATC+GGG 0.436682 1.2:+79394172 MS.gene060275:CDS
GGTCAGAACCGCTGCGTCAT+CGG 0.438094 1.2:+79394171 MS.gene060275:CDS
CTGATGGGAACAACAATGTT+AGG 0.441088 1.2:+79391466 MS.gene060275:CDS
AAGATGAAGTTTATGAAACT+TGG 0.441776 1.2:+79391420 None:intergenic
GAATCAAAGACCTGAGCATT+GGG 0.443547 1.2:+79394221 MS.gene060275:CDS
CAGATATTATTGTCAGCATA+GGG 0.447255 1.2:+79392463 MS.gene060275:CDS
AGAAGTCTTTCATTAAGCTA+TGG 0.447436 1.2:+79394449 MS.gene060275:CDS
TACAAAGTCTTTGTCACCAT+TGG 0.450362 1.2:+79392996 MS.gene060275:CDS
GAAGTCTTTCATTAAGCTAT+GGG 0.452509 1.2:+79394450 MS.gene060275:CDS
AATCACATTGTAAGCATTGA+GGG 0.462223 1.2:-79392839 None:intergenic
ATTCAAATTTCAGACATTCC+TGG 0.463677 1.2:+79392763 MS.gene060275:CDS
GATGTGCTAGTAAAGAGAAT+TGG 0.464303 1.2:+79393489 MS.gene060275:CDS
AAGTTGTTGCCTTCCGAGAA+AGG 0.469404 1.2:+79393393 MS.gene060275:CDS
CTTACAATGTGATTGCTACT+AGG 0.469814 1.2:+79392848 MS.gene060275:CDS
GTGTAGATTTAACTTCTTCA+GGG 0.472605 1.2:-79394537 None:intergenic
GAGAATTGGTCAGCAATTAG+AGG 0.476150 1.2:+79393503 MS.gene060275:CDS
ACCATTGGATGAGGAGCAAA+AGG 0.477736 1.2:+79393011 MS.gene060275:CDS
TACATTGTAATCTCTCCATC+TGG 0.481738 1.2:-79393558 None:intergenic
GTATAGTACAGAAAATTGTA+AGG 0.482058 1.2:+79393589 MS.gene060275:CDS
GTCTTTGTCACCATTGGATG+AGG 0.486439 1.2:+79393002 MS.gene060275:CDS
TTTCACCTTTGCTGATACCA+GGG 0.486873 1.2:-79394030 None:intergenic
GTTGGAAACAGTTTCAAAGA+TGG 0.488525 1.2:+79394364 MS.gene060275:CDS
TGCTAAACCAAACATGGATA+AGG 0.489081 1.2:+79394390 MS.gene060275:CDS
CCAGATACATTTCAGACTGA+TGG 0.490097 1.2:+79391450 MS.gene060275:CDS
ATGGTTGCAAAACTCATAGA+TGG 0.492757 1.2:+79393714 MS.gene060275:CDS
GCTTTCTGCAATCCATTAGC+TGG 0.493502 1.2:-79394066 None:intergenic
CTCGAAATGTGCCAAAGGAC+TGG 0.494491 1.2:+79393169 MS.gene060275:CDS
GGCTATTGACACATATTTGA+AGG 0.499410 1.2:+79393845 MS.gene060275:CDS
GGAATCAAAGACCTGAGCAT+TGG 0.502284 1.2:+79394220 MS.gene060275:CDS
GAGATTGAATTGGTTGGAGG+TGG 0.502864 1.2:+79393639 MS.gene060275:CDS
TCAGATTCATCTGAGAGTAT+TGG 0.503452 1.2:+79394505 MS.gene060275:CDS
AGTCTGAAATGTATCTGGCT+TGG 0.503488 1.2:-79391445 None:intergenic
AATTCCGAGATTGAATTGGT+TGG 0.507004 1.2:+79393633 MS.gene060275:CDS
AGGTGTGCAGCAGAGTATCT+TGG 0.508603 1.2:+79392868 MS.gene060275:CDS
ATGCATGAAAACATTGAGAA+AGG 0.510465 1.2:+79392892 MS.gene060275:CDS
TCCGAGATTGAATTGGTTGG+AGG 0.510666 1.2:+79393636 MS.gene060275:CDS
GTTGGAGGTGGCGAACTTGA+AGG 0.511286 1.2:+79393651 MS.gene060275:CDS
TCCCGACCTTGAGCTACCGT+TGG 0.511760 1.2:-79394245 None:intergenic
GAATATGACACGGATGGAGC+GGG 0.513318 1.2:+79394280 MS.gene060275:CDS
TCAGATATTATTGTCAGCAT+AGG 0.515648 1.2:+79392462 MS.gene060275:CDS
ATCAGATGCCTCTAAGCTGA+TGG 0.515822 1.2:+79393695 MS.gene060275:CDS
AGTTCTAACTCCATTCTGGT+TGG 0.516845 1.2:-79393148 None:intergenic
CATTGAATCTATAGCAAACA+AGG 0.517035 1.2:+79393047 MS.gene060275:CDS
ATGTGTCAATAGCCCTGTAA+AGG 0.517885 1.2:-79393836 None:intergenic
GGAATTAAAGGCATTAAGAA+AGG 0.526651 1.2:+79394312 MS.gene060275:CDS
GGCTTTGAGTCCAACCAGAA+TGG 0.526969 1.2:+79393138 MS.gene060275:CDS
TACCGTTGGACCCAATGCTC+AGG 0.527764 1.2:-79394231 None:intergenic
CTTGAAGGGATAAGAAAGCC+GGG 0.528275 1.2:+79393666 MS.gene060275:CDS
ATCTCTCGTCCGTCTCATGA+TGG 0.528536 1.2:+79393813 MS.gene060275:CDS
AAGGTCGGGAACAACTAATC+CGG 0.530475 1.2:+79394258 MS.gene060275:CDS
TTGAGACAAAGCAACGGAGT+TGG 0.534244 1.2:+79394346 MS.gene060275:CDS
TCCAACGGTAGCTCAAGGTC+GGG 0.534974 1.2:+79394244 MS.gene060275:CDS
GAGGCATCTGATAAAATCCC+CGG 0.536394 1.2:-79393684 None:intergenic
TCGATGTTTCTAAAGTTGAC+TGG 0.539514 1.2:+79393076 MS.gene060275:CDS
ACCTCCAACCAATTCAATCT+CGG 0.540022 1.2:-79393637 None:intergenic
CAATCACATTGTAAGCATTG+AGG 0.552608 1.2:-79392840 None:intergenic
ACTTGAAGGGATAAGAAAGC+CGG 0.555989 1.2:+79393665 MS.gene060275:CDS
AAGACTTTGTAGTCTGAAGA+AGG 0.556254 1.2:-79392984 None:intergenic
GACCTGAGCATTGGGTCCAA+CGG 0.556700 1.2:+79394229 MS.gene060275:CDS
TTGGAGGTGGCGAACTTGAA+GGG 0.557828 1.2:+79393652 MS.gene060275:CDS
TGCTTCGACACATCCTCACA+TGG 0.560000 1.2:-79393345 None:intergenic
CAGGTATGTTGCAAGTGAGT+TGG 0.560221 1.2:+79392437 MS.gene060275:intron
GGAGGACATGGAGAAAATAG+TGG 0.561699 1.2:+79394481 MS.gene060275:CDS
GTCCAACGGTAGCTCAAGGT+CGG 0.564380 1.2:+79394243 MS.gene060275:CDS
AAGCTATGGGCAAGCAAAGG+AGG 0.564447 1.2:+79394463 MS.gene060275:CDS
GTGAGGATGTGTCGAAGCAT+CGG 0.570340 1.2:+79393349 MS.gene060275:CDS
ACCGACACGTGTAATTGTGC+AGG 0.570689 1.2:+79394132 MS.gene060275:CDS
GAGATTACAATGTATGATGT+TGG 0.570865 1.2:+79393567 MS.gene060275:CDS
GAATTCCTCCTATTTCTGGA+TGG 0.571158 1.2:-79394559 None:intergenic
CAGATACATTTCAGACTGAT+GGG 0.573177 1.2:+79391451 MS.gene060275:CDS
GAAACACTGCCTTTCTCGGA+AGG 0.575743 1.2:-79393402 None:intergenic
TGGGCAAGCAAAGGAGGACA+TGG 0.577855 1.2:+79394469 MS.gene060275:CDS
GCAGGTACTACATTTCGAGC+AGG 0.578783 1.2:+79394150 MS.gene060275:CDS
TCAAAGGCACTTGCACCACC+AGG 0.579140 1.2:-79392781 None:intergenic
TGGAGATGCTAAACCAAACA+TGG 0.581860 1.2:+79394384 MS.gene060275:CDS
AGCACTCCAGACATAGCTAA+AGG 0.582825 1.2:+79394199 MS.gene060275:CDS
GTCTCATGATGGCCTTTACA+GGG 0.582962 1.2:+79393824 MS.gene060275:CDS
GAAATGTGCCAAAGGACTGG+TGG 0.588764 1.2:+79393172 MS.gene060275:CDS
AAGTTGCCAAATTTCAGCAA+GGG 0.593702 1.2:+79393315 MS.gene060275:CDS
GGATGGAGCGGGGACAGCTG+AGG 0.597563 1.2:+79394291 MS.gene060275:CDS
TTGGGTCCAACGGTAGCTCA+AGG 0.599883 1.2:+79394239 MS.gene060275:CDS
TTGCTATAGATTCAATGCAA+CGG 0.601629 1.2:-79393041 None:intergenic
AAAGTTGCCAAATTTCAGCA+AGG 0.602734 1.2:+79393314 MS.gene060275:CDS
ATTAAGCTATGGGCAAGCAA+AGG 0.609202 1.2:+79394460 MS.gene060275:CDS
TGACAACTCTTTGATATGAG+AGG 0.609742 1.2:-79392694 None:intergenic
AAACTTAGCACATATCTCAA+AGG 0.610871 1.2:-79392797 None:intergenic
GGAATATGACACGGATGGAG+CGG 0.613455 1.2:+79394279 MS.gene060275:CDS
CTACACCATCCAGAAATAGG+AGG 0.614194 1.2:+79394554 MS.gene060275:CDS
AGAAAGGCAGTGTTTCGTGT+AGG 0.616869 1.2:+79393409 MS.gene060275:CDS
ACCTGCACAATTACACGTGT+CGG 0.621274 1.2:-79394133 None:intergenic
TATAGTACAGAAAATTGTAA+GGG 0.624280 1.2:+79393590 MS.gene060275:CDS
AATCCGGAATATGACACGGA+TGG 0.625200 1.2:+79394274 MS.gene060275:CDS
CTGTAAAGGCCATCATGAGA+CGG 0.630996 1.2:-79393822 None:intergenic
AATTGGTCAGCAATTAGAGG+AGG 0.631067 1.2:+79393506 MS.gene060275:CDS
TGCATGCAGTGCAAAATGAG+AGG 0.631851 1.2:+79394107 MS.gene060275:CDS
GATCCTTCGCGATTTCAGCA+AGG 0.642218 1.2:-79393740 None:intergenic
AACTAATCCGGAATATGACA+CGG 0.643937 1.2:+79394270 MS.gene060275:CDS
CAAATTTCAGACATTCCTGG+TGG 0.649529 1.2:+79392766 MS.gene060275:CDS
TAGAACTCGAAATGTGCCAA+AGG 0.653925 1.2:+79393164 MS.gene060275:CDS
GAGCACCCTGGTATCAGCAA+AGG 0.656688 1.2:+79394025 MS.gene060275:CDS
TATAACAAATATCAAAACCA+AGG 0.664477 1.2:+79393239 MS.gene060275:CDS
AGATATTATTGTCAGCATAG+GGG 0.671630 1.2:+79392464 MS.gene060275:CDS
ATACCTTGCTGAAATCGCGA+AGG 0.673252 1.2:+79393737 MS.gene060275:CDS
AAATGTGCCAAAGGACTGGT+GGG 0.677067 1.2:+79393173 MS.gene060275:CDS
CAAGGGTATGATCCCATGTG+AGG 0.680645 1.2:+79393332 MS.gene060275:CDS
GAAACACTACAGGAGCACCC+TGG 0.682303 1.2:+79394013 MS.gene060275:intron
AGATTAACAAAATCTGACAA+TGG 0.684164 1.2:-79393771 None:intergenic
AATATGACACGGATGGAGCG+GGG 0.701289 1.2:+79394281 MS.gene060275:CDS
GCTAGTACCCGATGACGCAG+CGG 0.707239 1.2:-79394179 None:intergenic
GCTTCGACACATCCTCACAT+GGG 0.708999 1.2:-79393344 None:intergenic
TTGAAGGGATAAGAAAGCCG+GGG 0.713574 1.2:+79393667 MS.gene060275:CDS
GCATCGTTGAGACAAAGCAA+CGG 0.713953 1.2:+79394340 MS.gene060275:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACTACAAATAAAAAGATT+TGG - chr1.2:79392674-79392693 None:intergenic 15.0%
!! AAATATTAAAAGAAACTGTT+GGG - chr1.2:79391655-79391674 None:intergenic 15.0%
!! ATGTTAAAATTTAAATTCTC+TGG + chr1.2:79393949-79393968 MS.gene060275:intron 15.0%
!! TATGCAAATTTCTTTATATT+AGG - chr1.2:79391615-79391634 None:intergenic 15.0%
!!! AAATTGCTATTAAATTTATC+AGG - chr1.2:79392537-79392556 None:intergenic 15.0%
!!! ATTTTTAGTGATTAAGAAAA+TGG + chr1.2:79391765-79391784 MS.gene060275:intron 15.0%
!!! TTTTAATATTTCTTCACTAT+TGG + chr1.2:79391664-79391683 MS.gene060275:intron 15.0%
!! ACAAAATTAATCTTTCTGAA+AGG + chr1.2:79391834-79391853 MS.gene060275:intron 20.0%
!! CAATCTTCTATATTTGAAAA+GGG - chr1.2:79392263-79392282 None:intergenic 20.0%
!! GAAATATTAAAAGAAACTGT+TGG - chr1.2:79391656-79391675 None:intergenic 20.0%
!! GTCTAATTGAAAAGTAATAA+TGG - chr1.2:79392230-79392249 None:intergenic 20.0%
!! TATAACAAATATCAAAACCA+AGG + chr1.2:79393239-79393258 MS.gene060275:CDS 20.0%
!! TATAGTACAGAAAATTGTAA+GGG + chr1.2:79393590-79393609 MS.gene060275:CDS 20.0%
!! TCTCTATACTGAATTTAAAA+TGG - chr1.2:79393903-79393922 None:intergenic 20.0%
!! TTTCTTTATATTAGGAACAA+AGG - chr1.2:79391607-79391626 None:intergenic 20.0%
!!! AAAATTGATGGATAAATAGA+AGG - chr1.2:79392025-79392044 None:intergenic 20.0%
!!! AATAGTAATTTAAGCATTGA+CGG - chr1.2:79392048-79392067 None:intergenic 20.0%
!!! CTTTTCAAATATAGAAGATT+GGG + chr1.2:79392262-79392281 MS.gene060275:intron 20.0%
! AAATCTGACAATGGTAAATT+AGG - chr1.2:79393765-79393784 None:intergenic 25.0%
! AGAACAAACTATCTAAAAAG+AGG - chr1.2:79392397-79392416 None:intergenic 25.0%
! AGATTAACAAAATCTGACAA+TGG - chr1.2:79393774-79393793 None:intergenic 25.0%
! ATAATGCTTGATCTAAATGA+AGG + chr1.2:79391884-79391903 MS.gene060275:intron 25.0%
! ATTCAATCTAACGATGTAAT+TGG + chr1.2:79393264-79393283 MS.gene060275:CDS 25.0%
! CCAATCTTCTATATTTGAAA+AGG - chr1.2:79392264-79392283 None:intergenic 25.0%
! CTGTTATTGGAAAAATGAAA+GGG + chr1.2:79394413-79394432 MS.gene060275:CDS 25.0%
! GAACAAACTATCTAAAAAGA+GGG - chr1.2:79392396-79392415 None:intergenic 25.0%
! GTATAGTACAGAAAATTGTA+AGG + chr1.2:79393589-79393608 MS.gene060275:CDS 25.0%
!! AAATTTCATTCCTTTTAGTG+TGG - chr1.2:79392615-79392634 None:intergenic 25.0%
!! CCTTTTCAAATATAGAAGAT+TGG + chr1.2:79392261-79392280 MS.gene060275:intron 25.0%
!! GATGTTTTCTTCATTATTGA+GGG - chr1.2:79392737-79392756 None:intergenic 25.0%
!! GTTGTTAAGTTCTTTTACAT+CGG - chr1.2:79392146-79392165 None:intergenic 25.0%
!! TACAAAGTTTTTCTTACACA+AGG + chr1.2:79392488-79392507 MS.gene060275:CDS 25.0%
!! TTTTTGTAGAATCAGAAGAT+AGG + chr1.2:79393460-79393479 MS.gene060275:CDS 25.0%
!!! TTCAAAGCATTTTAGTGTAA+CGG - chr1.2:79393996-79394015 None:intergenic 25.0%
AAACATCGATCTTGAAAAGA+AGG - chr1.2:79392921-79392940 None:intergenic 30.0%
AAACTTAGCACATATCTCAA+AGG - chr1.2:79392800-79392819 None:intergenic 30.0%
AGAAGTCTTTCATTAAGCTA+TGG + chr1.2:79394449-79394468 MS.gene060275:CDS 30.0%
AGATATTATTGTCAGCATAG+GGG + chr1.2:79392464-79392483 MS.gene060275:CDS 30.0%
ATAGTCATGAAGAACATAGA+AGG - chr1.2:79391866-79391885 None:intergenic 30.0%
ATATAACCGAAAAAAGCTTC+CGG + chr1.2:79393107-79393126 MS.gene060275:CDS 30.0%
ATCGTTAGATTGAATTTCCT+TGG - chr1.2:79393259-79393278 None:intergenic 30.0%
ATGCATGAAAACATTGAGAA+AGG + chr1.2:79392892-79392911 MS.gene060275:CDS 30.0%
ATTCAAATTTCAGACATTCC+TGG + chr1.2:79392763-79392782 MS.gene060275:CDS 30.0%
CAAAAAAAGGAAGACGAAAA+AGG - chr1.2:79391804-79391823 None:intergenic 30.0%
CAGATATTATTGTCAGCATA+GGG + chr1.2:79392463-79392482 MS.gene060275:CDS 30.0%
CATTGAATCTATAGCAAACA+AGG + chr1.2:79393047-79393066 MS.gene060275:CDS 30.0%
CATTGCATAAAGTAGAAAAG+CGG - chr1.2:79391731-79391750 None:intergenic 30.0%
GAAGTCTTTCATTAAGCTAT+GGG + chr1.2:79394450-79394469 MS.gene060275:CDS 30.0%
GAGATTACAATGTATGATGT+TGG + chr1.2:79393567-79393586 MS.gene060275:CDS 30.0%
GCTATTAAATTTATCAGGCA+TGG - chr1.2:79392532-79392551 None:intergenic 30.0%
GCTGTTATTGGAAAAATGAA+AGG + chr1.2:79394412-79394431 MS.gene060275:CDS 30.0%
TCAGATATTATTGTCAGCAT+AGG + chr1.2:79392462-79392481 MS.gene060275:CDS 30.0%
TTGCTATAGATTCAATGCAA+CGG - chr1.2:79393044-79393063 None:intergenic 30.0%
! ATATGTGCTAAGTTTTGCTA+CGG + chr1.2:79392805-79392824 MS.gene060275:CDS 30.0%
! ATTTATCATCTTTTGCCTTG+TGG + chr1.2:79392637-79392656 MS.gene060275:intron 30.0%
! CGATGTTTTCTTCATTATTG+AGG - chr1.2:79392738-79392757 None:intergenic 30.0%
! GTGTAGATTTAACTTCTTCA+GGG - chr1.2:79394540-79394559 None:intergenic 30.0%
!! AAAATGCTTTGAAACACTAC+AGG + chr1.2:79394003-79394022 MS.gene060275:intron 30.0%
!! AATCACATTGTAAGCATTGA+GGG - chr1.2:79392842-79392861 None:intergenic 30.0%
!! CTTTTTCGTCTTCCTTTTTT+TGG + chr1.2:79391802-79391821 MS.gene060275:intron 30.0%
!! GGAATTAAAGGCATTAAGAA+AGG + chr1.2:79394312-79394331 MS.gene060275:CDS 30.0%
!! TTCTTTGAAGCTGTCTTTAT+TGG + chr1.2:79392181-79392200 MS.gene060275:intron 30.0%
!!! ATTTTGATTAAAGCACCAGA+TGG + chr1.2:79393543-79393562 MS.gene060275:CDS 30.0%
AAAAAGCTTCCGGAAGAAAA+TGG + chr1.2:79393117-79393136 MS.gene060275:CDS 35.0%
AAAAGAGTAGAACCCTAGAA+TGG - chr1.2:79392347-79392366 None:intergenic 35.0%
AAAGTTGCCAAATTTCAGCA+AGG + chr1.2:79393314-79393333 MS.gene060275:CDS 35.0%
AACATGGATAAGGCTGTTAT+TGG + chr1.2:79394400-79394419 MS.gene060275:CDS 35.0%
AACTAATCCGGAATATGACA+CGG + chr1.2:79394270-79394289 MS.gene060275:CDS 35.0%
AACTGAATTCCTCCTATTTC+TGG - chr1.2:79394566-79394585 None:intergenic 35.0%
AAGACTTTGTAGTCTGAAGA+AGG - chr1.2:79392987-79393006 None:intergenic 35.0%
AAGCGGAAATCAAAACTAGT+AGG - chr1.2:79391714-79391733 None:intergenic 35.0%
AAGTTGCCAAATTTCAGCAA+GGG + chr1.2:79393315-79393334 MS.gene060275:CDS 35.0%
AATCTACACCATCCAGAAAT+AGG + chr1.2:79394551-79394570 MS.gene060275:CDS 35.0%
AATTCCGAGATTGAATTGGT+TGG + chr1.2:79393633-79393652 MS.gene060275:CDS 35.0%
AATTTATCAGGCATGGTAGA+AGG - chr1.2:79392525-79392544 None:intergenic 35.0%
ATCATACCCTTGCTGAAATT+TGG - chr1.2:79393324-79393343 None:intergenic 35.0%
ATGGTTGCAAAACTCATAGA+TGG + chr1.2:79393714-79393733 MS.gene060275:CDS 35.0%
CAGATACATTTCAGACTGAT+GGG + chr1.2:79391451-79391470 MS.gene060275:CDS 35.0%
CTTACAATGTGATTGCTACT+AGG + chr1.2:79392848-79392867 MS.gene060275:CDS 35.0%
GATGTGCTAGTAAAGAGAAT+TGG + chr1.2:79393489-79393508 MS.gene060275:CDS 35.0%
GGCTATTGACACATATTTGA+AGG + chr1.2:79393845-79393864 MS.gene060275:CDS 35.0%
GTTGGAAACAGTTTCAAAGA+TGG + chr1.2:79394364-79394383 MS.gene060275:CDS 35.0%
TACAAAGTCTTTGTCACCAT+TGG + chr1.2:79392996-79393015 MS.gene060275:CDS 35.0%
TACATTGTAATCTCTCCATC+TGG - chr1.2:79393561-79393580 None:intergenic 35.0%
TACGAAAAATGCTAGAGCTT+AGG - chr1.2:79392945-79392964 None:intergenic 35.0%
TCACAATTCCGAGATTGAAT+TGG + chr1.2:79393629-79393648 MS.gene060275:CDS 35.0%
TCTGTAAGCATAAGCTTTCA+AGG - chr1.2:79393295-79393314 None:intergenic 35.0%
TGACAACTCTTTGATATGAG+AGG - chr1.2:79392697-79392716 None:intergenic 35.0%
TGCTAAACCAAACATGGATA+AGG + chr1.2:79394390-79394409 MS.gene060275:CDS 35.0%
TGTAGTCTGAAGAAGGATAA+TGG - chr1.2:79392980-79392999 None:intergenic 35.0%
TTGATTCCTTTAGCTATGTC+TGG - chr1.2:79394208-79394227 None:intergenic 35.0%
! ATAACAGCCTTATCCATGTT+TGG - chr1.2:79394400-79394419 None:intergenic 35.0%
! ATTCCTTTTAGTGTGGTGTA+AGG - chr1.2:79392608-79392627 None:intergenic 35.0%
! CAATCACATTGTAAGCATTG+AGG - chr1.2:79392843-79392862 None:intergenic 35.0%
! GGTGTAGATTTAACTTCTTC+AGG - chr1.2:79394541-79394560 None:intergenic 35.0%
! TAGCATTTTTCGTAGTTGGA+AGG + chr1.2:79392951-79392970 MS.gene060275:CDS 35.0%
! TCAGATTCATCTGAGAGTAT+TGG + chr1.2:79394505-79394524 MS.gene060275:CDS 35.0%
! TTCCTTTTAGTGTGGTGTAA+GGG - chr1.2:79392607-79392626 None:intergenic 35.0%
!! AAGCATTGACGGAAAATTGA+TGG - chr1.2:79392037-79392056 None:intergenic 35.0%
!! TCGATGTTTCTAAAGTTGAC+TGG + chr1.2:79393076-79393095 MS.gene060275:CDS 35.0%
!!! TTCGTCTTCCTTTTTTTGGT+TGG + chr1.2:79391806-79391825 MS.gene060275:intron 35.0%
!!! TTTCTTCCGGAAGCTTTTTT+CGG - chr1.2:79393116-79393135 None:intergenic 35.0%
AATTGGTCAGCAATTAGAGG+AGG + chr1.2:79393506-79393525 MS.gene060275:CDS 40.0%
ACCTCCAACCAATTCAATCT+CGG - chr1.2:79393640-79393659 None:intergenic 40.0%
ACTTGAAGGGATAAGAAAGC+CGG + chr1.2:79393665-79393684 MS.gene060275:CDS 40.0%
AGATACATGCGGAGAAATGT+AGG + chr1.2:79391913-79391932 MS.gene060275:intron 40.0%
ATGTGTCAATAGCCCTGTAA+AGG - chr1.2:79393839-79393858 None:intergenic 40.0%
ATTAAGCTATGGGCAAGCAA+AGG + chr1.2:79394460-79394479 MS.gene060275:CDS 40.0%
CAAATTTCAGACATTCCTGG+TGG + chr1.2:79392766-79392785 MS.gene060275:CDS 40.0%
CCAGATACATTTCAGACTGA+TGG + chr1.2:79391450-79391469 MS.gene060275:CDS 40.0%
CTGATGGGAACAACAATGTT+AGG + chr1.2:79391466-79391485 MS.gene060275:CDS 40.0%
GAAGGATACACAGATACATG+CGG + chr1.2:79391902-79391921 MS.gene060275:intron 40.0%
GAATCAAAGACCTGAGCATT+GGG + chr1.2:79394221-79394240 MS.gene060275:CDS 40.0%
GAGAATTGGTCAGCAATTAG+AGG + chr1.2:79393503-79393522 MS.gene060275:CDS 40.0%
GTCATGAAGAACATAGAAGG+CGG - chr1.2:79391863-79391882 None:intergenic 40.0%
TAGAACTCGAAATGTGCCAA+AGG + chr1.2:79393164-79393183 MS.gene060275:CDS 40.0%
TGAATGTACAAGTCCTAGTC+AGG - chr1.2:79391972-79391991 None:intergenic 40.0%
TGGAGATGCTAAACCAAACA+TGG + chr1.2:79394384-79394403 MS.gene060275:CDS 40.0%
TGTCATCGCCAACCAAAAAA+AGG - chr1.2:79391817-79391836 None:intergenic 40.0%
TTATTGTTGCTGACCTGACT+AGG + chr1.2:79391956-79391975 MS.gene060275:intron 40.0%
TTCCCTTACACCACACTAAA+AGG + chr1.2:79392602-79392621 MS.gene060275:intron 40.0%
TTGATCTAGCCACCATTCTA+GGG + chr1.2:79392332-79392351 MS.gene060275:intron 40.0%
TTTCACCTTTGCTGATACCA+GGG - chr1.2:79394033-79394052 None:intergenic 40.0%
! AGTCTGAAATGTATCTGGCT+TGG - chr1.2:79391448-79391467 None:intergenic 40.0%
! AGTTCTAACTCCATTCTGGT+TGG - chr1.2:79393151-79393170 None:intergenic 40.0%
! CCATCAGTCTGAAATGTATC+TGG - chr1.2:79391453-79391472 None:intergenic 40.0%
! GAAGAGTATATGCCAGCTAA+TGG + chr1.2:79394054-79394073 MS.gene060275:CDS 40.0%
! GCTCTAGCATTTTTCGTAGT+TGG + chr1.2:79392947-79392966 MS.gene060275:CDS 40.0%
! TTCGAGTTCTAACTCCATTC+TGG - chr1.2:79393155-79393174 None:intergenic 40.0%
! TTGGAGTATCAGTATCCACA+AGG - chr1.2:79392655-79392674 None:intergenic 40.0%
! TTTTCACCTTTGCTGATACC+AGG - chr1.2:79394034-79394053 None:intergenic 40.0%
! TTTTGCAACCATCAGCTTAG+AGG - chr1.2:79393706-79393725 None:intergenic 40.0%
!! GAATTCCTCCTATTTCTGGA+TGG - chr1.2:79394562-79394581 None:intergenic 40.0%
!! GACTCAAAGCCATTTTCTTC+CGG - chr1.2:79393129-79393148 None:intergenic 40.0%
AAGGTCGGGAACAACTAATC+CGG + chr1.2:79394258-79394277 MS.gene060275:CDS 45.0%
AAGTTGTTGCCTTCCGAGAA+AGG + chr1.2:79393393-79393412 MS.gene060275:CDS 45.0%
AATCCGGAATATGACACGGA+TGG + chr1.2:79394274-79394293 MS.gene060275:CDS 45.0%
ACACGAAACACTGCCTTTCT+CGG - chr1.2:79393409-79393428 None:intergenic 45.0%
ACCATTGGATGAGGAGCAAA+AGG + chr1.2:79393011-79393030 MS.gene060275:CDS 45.0%
ACCTGCACAATTACACGTGT+CGG - chr1.2:79394136-79394155 None:intergenic 45.0%
AGAAAGGCAGTGTTTCGTGT+AGG + chr1.2:79393409-79393428 MS.gene060275:CDS 45.0%
AGAGTAGAACCCTAGAATGG+TGG - chr1.2:79392344-79392363 None:intergenic 45.0%
AGCACTCCAGACATAGCTAA+AGG + chr1.2:79394199-79394218 MS.gene060275:CDS 45.0%
ATACCTTGCTGAAATCGCGA+AGG + chr1.2:79393737-79393756 MS.gene060275:CDS 45.0%
ATCAGATGCCTCTAAGCTGA+TGG + chr1.2:79393695-79393714 MS.gene060275:CDS 45.0%
CAGGTATGTTGCAAGTGAGT+TGG + chr1.2:79392437-79392456 MS.gene060275:intron 45.0%
CAGTGTTTCGTGTAGGTTCT+TGG + chr1.2:79393416-79393435 MS.gene060275:CDS 45.0%
CTACACCATCCAGAAATAGG+AGG + chr1.2:79394554-79394573 MS.gene060275:CDS 45.0%
CTGTAAAGGCCATCATGAGA+CGG - chr1.2:79393825-79393844 None:intergenic 45.0%
CTTGAAGGGATAAGAAAGCC+GGG + chr1.2:79393666-79393685 MS.gene060275:CDS 45.0%
CTTGATCTAGCCACCATTCT+AGG + chr1.2:79392331-79392350 MS.gene060275:intron 45.0%
GAGATTGAATTGGTTGGAGG+TGG + chr1.2:79393639-79393658 MS.gene060275:CDS 45.0%
GCATCGTTGAGACAAAGCAA+CGG + chr1.2:79394340-79394359 MS.gene060275:CDS 45.0%
GCTTTCTGCAATCCATTAGC+TGG - chr1.2:79394069-79394088 None:intergenic 45.0%
GGAATCAAAGACCTGAGCAT+TGG + chr1.2:79394220-79394239 MS.gene060275:CDS 45.0%
GGAGGACATGGAGAAAATAG+TGG + chr1.2:79394481-79394500 MS.gene060275:CDS 45.0%
GTCTCATGATGGCCTTTACA+GGG + chr1.2:79393824-79393843 MS.gene060275:CDS 45.0%
GTCTTTGTCACCATTGGATG+AGG + chr1.2:79393002-79393021 MS.gene060275:CDS 45.0%
TCCGAGATTGAATTGGTTGG+AGG + chr1.2:79393636-79393655 MS.gene060275:CDS 45.0%
TGCATGCAGTGCAAAATGAG+AGG + chr1.2:79394107-79394126 MS.gene060275:CDS 45.0%
TTGAAGGGATAAGAAAGCCG+GGG + chr1.2:79393667-79393686 MS.gene060275:CDS 45.0%
TTGAGACAAAGCAACGGAGT+TGG + chr1.2:79394346-79394365 MS.gene060275:CDS 45.0%
! AAATGTGCCAAAGGACTGGT+GGG + chr1.2:79393173-79393192 MS.gene060275:CDS 45.0%
! ACCTTTTGCTCCTCATCCAA+TGG - chr1.2:79393015-79393034 None:intergenic 45.0%
! CTCATTTTGCACTGCATGCA+AGG - chr1.2:79394107-79394126 None:intergenic 45.0%
! GAGGCATCTGATAAAATCCC+CGG - chr1.2:79393687-79393706 None:intergenic 45.0%
AAGCTATGGGCAAGCAAAGG+AGG + chr1.2:79394463-79394482 MS.gene060275:CDS 50.0%
AATATGACACGGATGGAGCG+GGG + chr1.2:79394281-79394300 MS.gene060275:CDS 50.0%
ACCGACACGTGTAATTGTGC+AGG + chr1.2:79394132-79394151 MS.gene060275:CDS 50.0%
ATCTCTCGTCCGTCTCATGA+TGG + chr1.2:79393813-79393832 MS.gene060275:CDS 50.0%
CGTCTCATGATGGCCTTTAC+AGG + chr1.2:79393823-79393842 MS.gene060275:CDS 50.0%
CTCGAAATGTGCCAAAGGAC+TGG + chr1.2:79393169-79393188 MS.gene060275:CDS 50.0%
GAAACACTGCCTTTCTCGGA+AGG - chr1.2:79393405-79393424 None:intergenic 50.0%
GAAATGTGCCAAAGGACTGG+TGG + chr1.2:79393172-79393191 MS.gene060275:CDS 50.0%
GAATATGACACGGATGGAGC+GGG + chr1.2:79394280-79394299 MS.gene060275:CDS 50.0%
GATCCTTCGCGATTTCAGCA+AGG - chr1.2:79393743-79393762 None:intergenic 50.0%
GCAACATACCTGCGCATGAA+AGG - chr1.2:79392429-79392448 None:intergenic 50.0%
GCAGGTACTACATTTCGAGC+AGG + chr1.2:79394150-79394169 MS.gene060275:CDS 50.0%
GCTCCATCCGTGTCATATTC+CGG - chr1.2:79394280-79394299 None:intergenic 50.0%
GCTTCGACACATCCTCACAT+GGG - chr1.2:79393347-79393366 None:intergenic 50.0%
GGAATATGACACGGATGGAG+CGG + chr1.2:79394279-79394298 MS.gene060275:CDS 50.0%
GGGGACAGCTGAGGAATTAA+AGG + chr1.2:79394300-79394319 MS.gene060275:CDS 50.0%
GTGAGGATGTGTCGAAGCAT+CGG + chr1.2:79393349-79393368 MS.gene060275:CDS 50.0%
TCAAGATGCCTTTCATGCGC+AGG + chr1.2:79392418-79392437 MS.gene060275:intron 50.0%
TCTTCAACCCACCAGTCCTT+TGG - chr1.2:79393183-79393202 None:intergenic 50.0%
TGCTTCGACACATCCTCACA+TGG - chr1.2:79393348-79393367 None:intergenic 50.0%
TTGGAGGTGGCGAACTTGAA+GGG + chr1.2:79393652-79393671 MS.gene060275:CDS 50.0%
! AGGTGTGCAGCAGAGTATCT+TGG + chr1.2:79392868-79392887 MS.gene060275:CDS 50.0%
! CAAGGGTATGATCCCATGTG+AGG + chr1.2:79393332-79393351 MS.gene060275:CDS 50.0%
!! GGCTTTGAGTCCAACCAGAA+TGG + chr1.2:79393138-79393157 MS.gene060275:CDS 50.0%
GAGCACCCTGGTATCAGCAA+AGG + chr1.2:79394025-79394044 MS.gene060275:CDS 55.0%
GTCCAACGGTAGCTCAAGGT+CGG + chr1.2:79394243-79394262 MS.gene060275:CDS 55.0%
GTTGGAGGTGGCGAACTTGA+AGG + chr1.2:79393651-79393670 MS.gene060275:CDS 55.0%
TACCGTTGGACCCAATGCTC+AGG - chr1.2:79394234-79394253 None:intergenic 55.0%
TCCAACGGTAGCTCAAGGTC+GGG + chr1.2:79394244-79394263 MS.gene060275:CDS 55.0%
TGGGCAAGCAAAGGAGGACA+TGG + chr1.2:79394469-79394488 MS.gene060275:CDS 55.0%
TTGGGTCCAACGGTAGCTCA+AGG + chr1.2:79394239-79394258 MS.gene060275:CDS 55.0%
!! GAAACACTACAGGAGCACCC+TGG + chr1.2:79394013-79394032 MS.gene060275:intron 55.0%
!! GACCTGAGCATTGGGTCCAA+CGG + chr1.2:79394229-79394248 MS.gene060275:CDS 55.0%
!! TCAAAGGCACTTGCACCACC+AGG - chr1.2:79392784-79392803 None:intergenic 55.0%
GCTAGTACCCGATGACGCAG+CGG - chr1.2:79394182-79394201 None:intergenic 60.0%
GGTCAGAACCGCTGCGTCAT+CGG + chr1.2:79394171-79394190 MS.gene060275:CDS 60.0%
GTCAGAACCGCTGCGTCATC+GGG + chr1.2:79394172-79394191 MS.gene060275:CDS 60.0%
TCCCGACCTTGAGCTACCGT+TGG - chr1.2:79394248-79394267 None:intergenic 60.0%
GGATGGAGCGGGGACAGCTG+AGG + chr1.2:79394291-79394310 MS.gene060275:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 79391423 79394591 79391423 ID=MS.gene060275
chr1.2 mRNA 79391423 79394591 79391423 ID=MS.gene060275.t1;Parent=MS.gene060275
chr1.2 exon 79391423 79391487 79391423 ID=MS.gene060275.t1.exon1;Parent=MS.gene060275.t1
chr1.2 CDS 79391423 79391487 79391423 ID=cds.MS.gene060275.t1;Parent=MS.gene060275.t1
chr1.2 exon 79392440 79392509 79392440 ID=MS.gene060275.t1.exon2;Parent=MS.gene060275.t1
chr1.2 CDS 79392440 79392509 79392440 ID=cds.MS.gene060275.t1;Parent=MS.gene060275.t1
chr1.2 exon 79392691 79393866 79392691 ID=MS.gene060275.t1.exon3;Parent=MS.gene060275.t1
chr1.2 CDS 79392691 79393866 79392691 ID=cds.MS.gene060275.t1;Parent=MS.gene060275.t1
chr1.2 exon 79394025 79394591 79394025 ID=MS.gene060275.t1.exon4;Parent=MS.gene060275.t1
chr1.2 CDS 79394025 79394591 79394025 ID=cds.MS.gene060275.t1;Parent=MS.gene060275.t1
Gene Sequence

>MS.gene060275

ATGAAGTTTATGAAACTTGGTTCCAAGCCAGATACATTTCAGACTGATGGGAACAACAATGTTAGGTAATATTATACAGTTATACATTTTCTATTAGTATAGACATTATTCTTAATTGTTAGTTTGCTAAAAAATTTGTTGTCATGAGAATTACTTGTTGATATGTTACTCTTTCAACTTTCCTTTGTTCCTAATATAAAGAAATTTGCATAAGAATGATATTCATTTTCCCAACAGTTTCTTTTAATATTTCTTCACTATTGGTGATAACTGAAAATTTTAAAAATTCCTACTAGTTTTGATTTCCGCTTTTCTACTTTATGCAATGCAATCTTTTAAGTGATTTTTAGTGATTAAGAAAATGGTTTCTGTTCAGTTCCTTTTTCGTCTTCCTTTTTTTGGTTGGCGATGACAAAATTAATCTTTCTGAAAGGCTTCCGCCTTCTATGTTCTTCATGACTATAATGCTTGATCTAAATGAAGGATACACAGATACATGCGGAGAAATGTAGGTCAAATATGAATGATAACTGTTATTGTTGCTGACCTGACTAGGACTTGTACATTCATATTGAAAATTAGTTATGTTTATATTTTGTCCTTCTATTTATCCATCAATTTTCCGTCAATGCTTAAATTACTATTTTTTTTAACTGATTTATCATAACACACTAGTGTTTATACATTATTTGTTGAAAATATTACTATGCTCGTGTACGACCGATGTAAAAGAACTTAACAACATTCACTTGCATTTTTTCTTTGAAGCTGTCTTTATTGGTTAGCGACTATATATCACAATGTCCATTATTACTTTTCAATTAGACTGTTTCAAATCCCTTTTCAAATATAGAAGATTGGGAAAGAAGTTTAATTAAGAATAGCTATGCATTTATTTCTCAGTCATTCTTGATCTAGCCACCATTCTAGGGTTCTACTCTTTTTTTATGTCTGTTATTCATTTTATGCACCCTCTTTTTAGATAGTTTGTTCTATCAAGATGCCTTTCATGCGCAGGTATGTTGCAAGTGAGTTGGCATCAGATATTATTGTCAGCATAGGGGATACAAAGTTTTTCTTACACAAGGTATGCTTAAATCCTTCTACCATGCCTGATAAATTTAATAGCAATTTGTGCAAAGTTAAGATTGATAAATACAACTCAATTTTTATGTTCATTTCCCTTACACCACACTAAAAGGAATGAAATTTACATTTATCATCTTTTGCCTTGTGGATACTGATACTCCAAATCTTTTTATTTGTAGTTTCCTCTCATATCAAAGAGTTGTCACTTACAGAAGTTGATCTCCCTCAATAATGAAGAAAACATCGACGAAATTCAAATTTCAGACATTCCTGGTGGTGCAAGTGCCTTTGAGATATGTGCTAAGTTTTGCTACGGCATGACTGTTACCCTCAATGCTTACAATGTGATTGCTACTAGGTGTGCAGCAGAGTATCTTGGAATGCATGAAAACATTGAGAAAGGAAACCTTCTTTTCAAGATCGATGTTTTCCTAAGCTCTAGCATTTTTCGTAGTTGGAAGGATTCCATTATCCTTCTTCAGACTACAAAGTCTTTGTCACCATTGGATGAGGAGCAAAAGGTTGTCAACCGTTGCATTGAATCTATAGCAAACAAGGCATGCGTCGATGTTTCTAAAGTTGACTGGTCTTACACATATAACCGAAAAAAGCTTCCGGAAGAAAATGGCTTTGAGTCCAACCAGAATGGAGTTAGAACTCGAAATGTGCCAAAGGACTGGTGGGTTGAAGATTTATGCGAACTTGAAGTTGACATGTACAAATCTGTTATAACAAATATCAAAACCAAGGAAATTCAATCTAACGATGTAATTGGTGAAGCCTTGAAAGCTTATGCTTACAGAAAGTTGCCAAATTTCAGCAAGGGTATGATCCCATGTGAGGATGTGTCGAAGCATCGGTTAATAGTTGAAACTATTGTGAAGTTGTTGCCTTCCGAGAAAGGCAGTGTTTCGTGTAGGTTCTTGGTTAAGTTATTGAAAGCTGCGATTTTTGTAGAATCAGAAGATAGGATCAGAGATGTGCTAGTAAAGAGAATTGGTCAGCAATTAGAGGAGGCTTCAGTAAACGATATTTTGATTAAAGCACCAGATGGAGAGATTACAATGTATGATGTTGGTATAGTACAGAAAATTGTAAGGGAGTTTCTTATGAAAGATCACAATTCCGAGATTGAATTGGTTGGAGGTGGCGAACTTGAAGGGATAAGAAAGCCGGGGATTTTATCAGATGCCTCTAAGCTGATGGTTGCAAAACTCATAGATGGATACCTTGCTGAAATCGCGAAGGATCCTAATTTACCATTGTCAGATTTTGTTAATCTTGCTGAGTTAGTTTCTAGCATCTCTCGTCCGTCTCATGATGGCCTTTACAGGGCTATTGACACATATTTGAAGGTAAAATTAATTCTTTGATTCATTTTGCATAGTCCATTTTAAATTCAGTATAGAGAATGCTTTTACGTTGTTGTGTCTTAGTATGTTAAAATTTAAATTCTCTGGATATTATCGATAATATTTTATCCGTTACACTAAAATGCTTTGAAACACTACAGGAGCACCCTGGTATCAGCAAAGGTGAAAAGAAGAGTATATGCCAGCTAATGGATTGCAGAAAGCTATCAGTTGATGCATCCTTGCATGCAGTGCAAAATGAGAGGCTACCGACACGTGTAATTGTGCAGGTACTACATTTCGAGCAGGTCAGAACCGCTGCGTCATCGGGTACTAGCACTCCAGACATAGCTAAAGGAATCAAAGACCTGAGCATTGGGTCCAACGGTAGCTCAAGGTCGGGAACAACTAATCCGGAATATGACACGGATGGAGCGGGGACAGCTGAGGAATTAAAGGCATTAAGAAAGGAACTTGCATCGTTGAGACAAAGCAACGGAGTTGGAAACAGTTTCAAAGATGGAGATGCTAAACCAAACATGGATAAGGCTGTTATTGGAAAAATGAAAGGGTTGTTGAAGTCAAAGAAGTCTTTCATTAAGCTATGGGCAAGCAAAGGAGGACATGGAGAAAATAGTGGCTCAGATTCATCTGAGAGTATTGGTTCTGTTAACCCTGAAGAAGTTAAATCTACACCATCCAGAAATAGGAGGAATTCAGTTTCCTAA

Protein sequence

>MS.gene060275.t1

MKFMKLGSKPDTFQTDGNNNVRYVASELASDIIVSIGDTKFFLHKFPLISKSCHLQKLISLNNEENIDEIQISDIPGGASAFEICAKFCYGMTVTLNAYNVIATRCAAEYLGMHENIEKGNLLFKIDVFLSSSIFRSWKDSIILLQTTKSLSPLDEEQKVVNRCIESIANKACVDVSKVDWSYTYNRKKLPEENGFESNQNGVRTRNVPKDWWVEDLCELEVDMYKSVITNIKTKEIQSNDVIGEALKAYAYRKLPNFSKGMIPCEDVSKHRLIVETIVKLLPSEKGSVSCRFLVKLLKAAIFVESEDRIRDVLVKRIGQQLEEASVNDILIKAPDGEITMYDVGIVQKIVREFLMKDHNSEIELVGGGELEGIRKPGILSDASKLMVAKLIDGYLAEIAKDPNLPLSDFVNLAELVSSISRPSHDGLYRAIDTYLKEHPGISKGEKKSICQLMDCRKLSVDASLHAVQNERLPTRVIVQVLHFEQVRTAASSGTSTPDIAKGIKDLSIGSNGSSRSGTTNPEYDTDGAGTAEELKALRKELASLRQSNGVGNSFKDGDAKPNMDKAVIGKMKGLLKSKKSFIKLWASKGGHGENSGSDSSESIGSVNPEEVKSTPSRNRRNSVS