Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016580.t1 | XP_003627885.2 | 96.8 | 339 | 11 | 0 | 1 | 339 | 1 | 339 | 6.10E-147 | 530.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016580.t1 | E4NKF8 | 30.3 | 297 | 194 | 5 | 2 | 297 | 399 | 683 | 2.5e-08 | 61.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016580.t1 | G7LGS1 | 96.8 | 339 | 11 | 0 | 1 | 339 | 1 | 339 | 4.4e-147 | 530.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene000712 | MS.gene016580 | PPI |
| MS.gene051287 | MS.gene016580 | PPI |
| MS.gene023023 | MS.gene016580 | PPI |
| MS.gene027334 | MS.gene016580 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016580.t1 | MTR_8g039560 | 97.640 | 339 | 8 | 0 | 1 | 339 | 1 | 339 | 0.0 | 665 |
| MS.gene016580.t1 | MTR_2g018010 | 32.441 | 299 | 186 | 7 | 1 | 297 | 389 | 673 | 5.56e-29 | 118 |
| MS.gene016580.t1 | MTR_5g083030 | 31.333 | 300 | 187 | 8 | 2 | 297 | 399 | 683 | 1.02e-27 | 114 |
| MS.gene016580.t1 | MTR_4g485520 | 31.488 | 289 | 180 | 9 | 7 | 294 | 372 | 643 | 6.32e-25 | 105 |
| MS.gene016580.t1 | MTR_4g485520 | 31.488 | 289 | 180 | 9 | 7 | 294 | 204 | 475 | 9.08e-25 | 104 |
| MS.gene016580.t1 | MTR_1g094215 | 31.683 | 303 | 186 | 12 | 2 | 300 | 156 | 441 | 5.42e-24 | 102 |
| MS.gene016580.t1 | MTR_1g094215 | 31.683 | 303 | 186 | 12 | 2 | 300 | 339 | 624 | 2.07e-23 | 101 |
| MS.gene016580.t1 | MTR_4g063800 | 30.312 | 320 | 200 | 12 | 3 | 318 | 348 | 648 | 5.53e-23 | 100 |
| MS.gene016580.t1 | MTR_7g078330 | 28.125 | 288 | 189 | 8 | 4 | 290 | 363 | 633 | 1.85e-21 | 95.9 |
| MS.gene016580.t1 | MTR_7g059405 | 29.655 | 290 | 182 | 11 | 10 | 297 | 363 | 632 | 6.34e-20 | 91.3 |
| MS.gene016580.t1 | MTR_3g466220 | 33.755 | 237 | 142 | 7 | 8 | 243 | 532 | 754 | 7.92e-20 | 90.9 |
| MS.gene016580.t1 | MTR_3g466220 | 33.755 | 237 | 142 | 7 | 8 | 243 | 553 | 775 | 8.08e-20 | 90.9 |
| MS.gene016580.t1 | MTR_7g097020 | 31.837 | 245 | 152 | 7 | 8 | 251 | 482 | 712 | 2.54e-17 | 83.6 |
| MS.gene016580.t1 | MTR_4g028960 | 32.372 | 312 | 175 | 14 | 1 | 297 | 373 | 663 | 3.85e-17 | 82.8 |
| MS.gene016580.t1 | MTR_1g069845 | 27.431 | 288 | 190 | 8 | 8 | 294 | 323 | 592 | 2.50e-16 | 80.5 |
| MS.gene016580.t1 | MTR_1g069845 | 27.431 | 288 | 190 | 8 | 8 | 294 | 440 | 709 | 3.18e-16 | 80.1 |
| MS.gene016580.t1 | MTR_1g069845 | 27.431 | 288 | 190 | 8 | 8 | 294 | 444 | 713 | 3.83e-16 | 79.7 |
| MS.gene016580.t1 | MTR_3g078160 | 28.522 | 291 | 191 | 9 | 10 | 297 | 380 | 656 | 5.81e-16 | 79.3 |
| MS.gene016580.t1 | MTR_3g078160 | 28.522 | 291 | 191 | 9 | 10 | 297 | 380 | 656 | 6.72e-16 | 79.0 |
| MS.gene016580.t1 | MTR_2g011140 | 29.492 | 295 | 180 | 11 | 9 | 297 | 106 | 378 | 3.17e-14 | 73.2 |
| MS.gene016580.t1 | MTR_2g026130 | 28.179 | 291 | 191 | 8 | 8 | 297 | 175 | 448 | 3.84e-14 | 73.6 |
| MS.gene016580.t1 | MTR_4g107010 | 27.458 | 295 | 189 | 9 | 11 | 297 | 386 | 663 | 8.91e-14 | 72.8 |
| MS.gene016580.t1 | MTR_1g018180 | 27.740 | 292 | 191 | 10 | 8 | 297 | 61 | 334 | 1.73e-12 | 67.8 |
| MS.gene016580.t1 | MTR_3g078340 | 26.644 | 289 | 195 | 7 | 10 | 297 | 213 | 485 | 5.18e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016580.t1 | AT1G08315 | 59.871 | 309 | 114 | 3 | 3 | 302 | 4 | 311 | 3.39e-123 | 357 |
| MS.gene016580.t1 | AT2G23140 | 33.333 | 288 | 173 | 8 | 8 | 294 | 354 | 623 | 1.69e-28 | 116 |
| MS.gene016580.t1 | AT2G23140 | 33.333 | 288 | 173 | 8 | 8 | 294 | 354 | 623 | 1.69e-28 | 116 |
| MS.gene016580.t1 | AT2G23140 | 33.681 | 288 | 172 | 8 | 8 | 294 | 546 | 815 | 3.19e-28 | 115 |
| MS.gene016580.t1 | AT2G23140 | 33.681 | 288 | 172 | 8 | 8 | 294 | 543 | 812 | 3.21e-28 | 115 |
| MS.gene016580.t1 | AT2G23140 | 33.681 | 288 | 172 | 8 | 8 | 294 | 543 | 812 | 3.21e-28 | 115 |
| MS.gene016580.t1 | AT1G23030 | 31.864 | 295 | 176 | 9 | 8 | 297 | 333 | 607 | 7.97e-27 | 111 |
| MS.gene016580.t1 | AT1G29340 | 31.138 | 334 | 205 | 9 | 1 | 326 | 401 | 717 | 9.45e-26 | 108 |
| MS.gene016580.t1 | AT5G67340 | 30.584 | 291 | 184 | 8 | 8 | 297 | 423 | 696 | 4.44e-22 | 97.8 |
| MS.gene016580.t1 | AT5G67340 | 30.584 | 291 | 184 | 8 | 8 | 297 | 423 | 696 | 4.44e-22 | 97.8 |
| MS.gene016580.t1 | AT1G71020 | 30.293 | 307 | 188 | 10 | 7 | 307 | 194 | 480 | 1.48e-21 | 95.5 |
| MS.gene016580.t1 | AT1G71020 | 30.293 | 307 | 188 | 10 | 7 | 307 | 342 | 628 | 2.26e-21 | 95.5 |
| MS.gene016580.t1 | AT3G54850 | 30.872 | 298 | 186 | 10 | 2 | 297 | 341 | 620 | 1.38e-19 | 90.1 |
| MS.gene016580.t1 | AT3G46510 | 29.900 | 301 | 175 | 11 | 12 | 294 | 342 | 624 | 3.67e-19 | 89.0 |
| MS.gene016580.t1 | AT2G28830 | 28.716 | 296 | 191 | 10 | 2 | 294 | 279 | 557 | 8.36e-19 | 87.8 |
| MS.gene016580.t1 | AT3G54790 | 29.825 | 285 | 182 | 7 | 11 | 294 | 477 | 744 | 4.48e-18 | 85.9 |
| MS.gene016580.t1 | AT3G54790 | 29.825 | 285 | 182 | 7 | 11 | 294 | 477 | 744 | 4.48e-18 | 85.9 |
| MS.gene016580.t1 | AT3G54790 | 29.825 | 285 | 182 | 7 | 11 | 294 | 441 | 708 | 5.36e-18 | 85.5 |
| MS.gene016580.t1 | AT5G42340 | 28.956 | 297 | 193 | 9 | 2 | 297 | 375 | 654 | 3.39e-16 | 80.1 |
| MS.gene016580.t1 | AT5G01830 | 31.295 | 278 | 162 | 9 | 27 | 297 | 388 | 643 | 5.32e-16 | 79.3 |
| MS.gene016580.t1 | AT5G65200 | 28.698 | 338 | 190 | 14 | 11 | 320 | 229 | 543 | 4.38e-15 | 76.6 |
| MS.gene016580.t1 | AT3G01400 | 30.169 | 295 | 180 | 13 | 8 | 295 | 64 | 339 | 1.62e-13 | 71.2 |
| MS.gene016580.t1 | AT1G60190 | 25.574 | 305 | 206 | 11 | 2 | 297 | 370 | 662 | 1.33e-12 | 69.3 |
| MS.gene016580.t1 | AT1G10560 | 26.159 | 302 | 203 | 10 | 3 | 297 | 385 | 673 | 4.50e-12 | 67.4 |
| MS.gene016580.t1 | AT5G62560 | 26.690 | 281 | 177 | 12 | 25 | 297 | 253 | 512 | 9.04e-11 | 63.5 |
Find 85 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGCGTTTAAGAAGGTTTC+TGG | 0.219872 | 8.1:-64394136 | MS.gene016580:CDS |
| TGCGCCTGATTCGGCTATTA+TGG | 0.221489 | 8.1:+64395171 | None:intergenic |
| AAGGATAAAGGAAGTGTTAA+AGG | 0.256345 | 8.1:-64393944 | MS.gene016580:CDS |
| AAGGGTGTAAAGAAGAATAA+AGG | 0.291422 | 8.1:+64395128 | None:intergenic |
| GCTATTATGGGTCGGGTTGA+TGG | 0.308712 | 8.1:+64395184 | None:intergenic |
| CTCGATGAGTGATTCGATTC+GGG | 0.324566 | 8.1:+64395231 | None:intergenic |
| GCGCCTGATTCGGCTATTAT+GGG | 0.332670 | 8.1:+64395172 | None:intergenic |
| ATTGCTGATGTTAAGGATAA+AGG | 0.334033 | 8.1:-64393956 | MS.gene016580:CDS |
| TTTCGTCGGTGGATGATTAT+CGG | 0.349847 | 8.1:-64394937 | MS.gene016580:CDS |
| TTGAATAGTGATTCGTCGTT+TGG | 0.355196 | 8.1:-64393818 | MS.gene016580:CDS |
| AACGAATCCTTCACCGTCCT+TGG | 0.377992 | 8.1:+64394842 | None:intergenic |
| GGTTCAGTTTGGTGTTGTTC+CGG | 0.382972 | 8.1:-64394771 | MS.gene016580:CDS |
| CGCGGTGGCGTTTGGTGCGT+TGG | 0.390519 | 8.1:-64393984 | MS.gene016580:CDS |
| GTAAGGAATTGCGCCTGATT+CGG | 0.391749 | 8.1:+64395162 | None:intergenic |
| GGATTGAACAGCGGCGGCGG+CGG | 0.408949 | 8.1:+64394985 | None:intergenic |
| GGCGGATTGAACAGCGGCGG+CGG | 0.409584 | 8.1:+64394982 | None:intergenic |
| TTTAAGAAGGTTTCTGGTGT+TGG | 0.413108 | 8.1:-64394130 | MS.gene016580:CDS |
| GCTCGATGAGTGATTCGATT+CGG | 0.440076 | 8.1:+64395230 | None:intergenic |
| ACACCGCGCGTGGACATGAT+AGG | 0.441940 | 8.1:+64395052 | None:intergenic |
| AATCATCCACCGACGAAAGA+AGG | 0.447664 | 8.1:+64394942 | None:intergenic |
| GTAAGAGACGCGGTGGCGTT+TGG | 0.449671 | 8.1:-64393992 | MS.gene016580:CDS |
| CGACCCATAATAGCCGAATC+AGG | 0.450618 | 8.1:-64395175 | MS.gene016580:CDS |
| GGTTTCTGGTGTTGGAGTGC+TGG | 0.453944 | 8.1:-64394122 | MS.gene016580:CDS |
| GATGATTATCGGACTGTTGT+TGG | 0.454158 | 8.1:-64394926 | MS.gene016580:CDS |
| AAGTGTTGAGGCGTTTAAGA+AGG | 0.460925 | 8.1:-64394143 | MS.gene016580:CDS |
| CTCAACACTTTCCTCGCAAC+CGG | 0.466572 | 8.1:+64394156 | None:intergenic |
| TTACTACTGGTTCGAGTATG+AGG | 0.466784 | 8.1:-64394084 | MS.gene016580:CDS |
| TTGAACAGCGGCGGCGGCGG+AGG | 0.468848 | 8.1:+64394988 | None:intergenic |
| ATTGTTAATGATGGTAGAGT+AGG | 0.470952 | 8.1:-64394734 | MS.gene016580:CDS |
| GTGGCGTTTGGTGCGTTGGA+TGG | 0.471560 | 8.1:-64393980 | MS.gene016580:CDS |
| AGGGTGTAAAGAAGAATAAA+GGG | 0.485644 | 8.1:+64395129 | None:intergenic |
| TGATTCGGCTATTATGGGTC+GGG | 0.485936 | 8.1:+64395177 | None:intergenic |
| GGATGGAATTGCTGATGTTA+AGG | 0.490466 | 8.1:-64393963 | MS.gene016580:CDS |
| CTGATTCGGCTATTATGGGT+CGG | 0.492707 | 8.1:+64395176 | None:intergenic |
| TTGTTAATGATGGTAGAGTA+GGG | 0.494346 | 8.1:-64394733 | MS.gene016580:CDS |
| AGGATAAAGGAAGTGTTAAA+GGG | 0.495009 | 8.1:-64393943 | MS.gene016580:CDS |
| CACGGTGATGTTCGTAGTCA+TGG | 0.500956 | 8.1:-64393851 | MS.gene016580:CDS |
| TCTTTCATGAATGAAGATAG+TGG | 0.502373 | 8.1:-64393794 | MS.gene016580:CDS |
| TGCTTCCGCGGTTATTGCGC+AGG | 0.502926 | 8.1:-64394699 | MS.gene016580:intron |
| CGTGCTACGATGGTTCAGTT+TGG | 0.504494 | 8.1:-64394782 | MS.gene016580:CDS |
| AAGTGTTAAAGGGCAGAGTA+AGG | 0.512764 | 8.1:-64393933 | MS.gene016580:CDS |
| GACGGTGAAGGATTCGTTGA+AGG | 0.512960 | 8.1:-64394837 | MS.gene016580:CDS |
| CTGGTTCGAGTATGAGGACG+AGG | 0.521816 | 8.1:-64394078 | MS.gene016580:CDS |
| TCCGTTGAATCGTGCTACGA+TGG | 0.531126 | 8.1:-64394792 | MS.gene016580:CDS |
| GATATAGGTCGCCGGTTGCG+AGG | 0.533682 | 8.1:-64394167 | MS.gene016580:intron |
| TCACAGCCTTCTTTCGTCGG+TGG | 0.538956 | 8.1:-64394948 | MS.gene016580:CDS |
| TAAAGGGTTTCAGCGAGGTA+AGG | 0.539730 | 8.1:+64395145 | None:intergenic |
| GAATCCTTCACCGTCCTTGG+CGG | 0.540119 | 8.1:+64394845 | None:intergenic |
| GTTCGTAGTCATGGTGATGT+TGG | 0.543807 | 8.1:-64393842 | MS.gene016580:CDS |
| GATTCACAGCCTTCTTTCGT+CGG | 0.551912 | 8.1:-64394951 | MS.gene016580:CDS |
| GACGAGGGAAAATGCAGTGT+CGG | 0.556430 | 8.1:-64394062 | MS.gene016580:CDS |
| CGCGTCGAGAACACCGCGCG+TGG | 0.558608 | 8.1:+64395042 | None:intergenic |
| ACCATCGTAGCACGATTCAA+CGG | 0.561289 | 8.1:+64394791 | None:intergenic |
| GATCTACTCGATCTTACTAC+TGG | 0.562670 | 8.1:-64394097 | MS.gene016580:CDS |
| CCGTCCTTGGCGGTGAAGAA+CGG | 0.564287 | 8.1:+64394855 | None:intergenic |
| CTTAATCTTGTGAGATGTGG+TGG | 0.564928 | 8.1:-64394034 | MS.gene016580:CDS |
| CACGGTGATGTTCGTAGTCA+CGG | 0.566505 | 8.1:-64393869 | MS.gene016580:CDS |
| TTGCTTAATCTTGTGAGATG+TGG | 0.567457 | 8.1:-64394037 | MS.gene016580:CDS |
| TGTGGTGGAGATGTGGTCGC+TGG | 0.575263 | 8.1:-64394019 | MS.gene016580:CDS |
| TTCACCGCCAAGGACGGTGA+AGG | 0.576560 | 8.1:-64394849 | MS.gene016580:CDS |
| GCTGTGAATCGTAGCGGCGG+CGG | 0.577574 | 8.1:+64394964 | None:intergenic |
| GTCACCGTTCTTCACCGCCA+AGG | 0.589598 | 8.1:-64394859 | MS.gene016580:CDS |
| CTAGCGTCCGCACCGCGCGG+CGG | 0.594313 | 8.1:+64395284 | None:intergenic |
| ACGCAAACCGCCGCGCGGTG+CGG | 0.595256 | 8.1:-64395291 | MS.gene016580:CDS |
| GAGTTGATGAGAGTGATGGT+TGG | 0.595956 | 8.1:-64393905 | MS.gene016580:CDS |
| GGCGGCGGATTGAACAGCGG+CGG | 0.598501 | 8.1:+64394979 | None:intergenic |
| GTTGGTGATGTTCGTAGTCA+CGG | 0.603776 | 8.1:-64393887 | MS.gene016580:CDS |
| TTCTGGTGTTGGAGTGCTGG+CGG | 0.604498 | 8.1:-64394119 | MS.gene016580:CDS |
| CCGTTCTTCACCGCCAAGGA+CGG | 0.608476 | 8.1:-64394855 | MS.gene016580:CDS |
| ACATCTCTGATATAGGTCGC+CGG | 0.608552 | 8.1:-64394175 | MS.gene016580:intron |
| CGCTGGAGATGTAAGAGACG+CGG | 0.633504 | 8.1:-64394002 | MS.gene016580:CDS |
| CGGTTGCGAGGAAAGTGTTG+AGG | 0.634053 | 8.1:-64394155 | MS.gene016580:CDS |
| GATTGTTGAAGATGCTTCCG+CGG | 0.638020 | 8.1:-64394711 | MS.gene016580:CDS |
| TGTGAGATGTGGTGGAGATG+TGG | 0.640840 | 8.1:-64394026 | MS.gene016580:CDS |
| AATAACCTGCGCAATAACCG+CGG | 0.661300 | 8.1:+64394694 | None:intergenic |
| AAGGCTGTGAATCGTAGCGG+CGG | 0.667512 | 8.1:+64394961 | None:intergenic |
| AGCGGCGGCGGATTGAACAG+CGG | 0.667946 | 8.1:+64394976 | None:intergenic |
| AATGGACGCAAACCGCCGCG+CGG | 0.672166 | 8.1:-64395296 | MS.gene016580:CDS |
| ATACTAGCGTCCGCACCGCG+CGG | 0.672467 | 8.1:+64395281 | None:intergenic |
| TGGAGATGTAAGAGACGCGG+TGG | 0.677373 | 8.1:-64393999 | MS.gene016580:CDS |
| ACAATCAACGAAAACAACGC+CGG | 0.685893 | 8.1:+64394752 | None:intergenic |
| AAGAATAAAGGGTTTCAGCG+AGG | 0.686647 | 8.1:+64395140 | None:intergenic |
| GAACCTATCATGTCCACGCG+CGG | 0.689698 | 8.1:-64395055 | MS.gene016580:CDS |
| AAGAAGGCTGTGAATCGTAG+CGG | 0.707499 | 8.1:+64394958 | None:intergenic |
| TGGTTCGAGTATGAGGACGA+GGG | 0.725606 | 8.1:-64394077 | MS.gene016580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAGAAATTGAATTAAATTA+AGG | - | chr8.1:64394465-64394484 | MS.gene016580:intron | 15.0% |
| !! | CATTCATAAGCTAAAAAATA+AGG | + | chr8.1:64394504-64394523 | None:intergenic | 20.0% |
| ! | AAGTAATATAATACGATAGC+CGG | - | chr8.1:64394829-64394848 | MS.gene016580:CDS | 25.0% |
| ! | GCTATCGTATTATATTACTT+AGG | + | chr8.1:64394829-64394848 | None:intergenic | 25.0% |
| ! | TTATATTACTTAGGTCTGTT+TGG | + | chr8.1:64394820-64394839 | None:intergenic | 25.0% |
| ! | TTTAGTGCAATCATATTTGT+CGG | - | chr8.1:64394652-64394671 | MS.gene016580:intron | 25.0% |
| !! | AACTTTTACATCTCTGATAT+AGG | - | chr8.1:64394894-64394913 | MS.gene016580:CDS | 25.0% |
| !! | TGATTTTCTCAGATTATTAG+CGG | + | chr8.1:64394627-64394646 | None:intergenic | 25.0% |
| !!! | TTTTCGTTGATTGTTAATGA+TGG | - | chr8.1:64394333-64394352 | MS.gene016580:intron | 25.0% |
| AAAGAGTTAGTTGTTCTAAC+CGG | + | chr8.1:64394851-64394870 | None:intergenic | 30.0% | |
| AGGGTGTAAAGAAGAATAAA+GGG | + | chr8.1:64393950-64393969 | None:intergenic | 30.0% | |
| ATTGCTGATGTTAAGGATAA+AGG | - | chr8.1:64395120-64395139 | MS.gene016580:CDS | 30.0% | |
| ATTGTTAATGATGGTAGAGT+AGG | - | chr8.1:64394342-64394361 | MS.gene016580:intron | 30.0% | |
| TCTTTCATGAATGAAGATAG+TGG | - | chr8.1:64395282-64395301 | MS.gene016580:CDS | 30.0% | |
| TTGTTAATGATGGTAGAGTA+GGG | - | chr8.1:64394343-64394362 | MS.gene016580:intron | 30.0% | |
| ! | AAGGGTGTAAAGAAGAATAA+AGG | + | chr8.1:64393951-64393970 | None:intergenic | 30.0% |
| !! | AAGGATAAAGGAAGTGTTAA+AGG | - | chr8.1:64395132-64395151 | MS.gene016580:CDS | 30.0% |
| !! | AGGATAAAGGAAGTGTTAAA+GGG | - | chr8.1:64395133-64395152 | MS.gene016580:CDS | 30.0% |
| TATGAAACACAGACACTTCT+GGG | + | chr8.1:64394742-64394761 | None:intergenic | 35.0% | |
| TTGAATAGTGATTCGTCGTT+TGG | - | chr8.1:64395258-64395277 | MS.gene016580:CDS | 35.0% | |
| TTGCTTAATCTTGTGAGATG+TGG | - | chr8.1:64395039-64395058 | MS.gene016580:CDS | 35.0% | |
| ! | GGACATGATAGGTTCTTTTT+CGG | + | chr8.1:64394016-64394035 | None:intergenic | 35.0% |
| !! | TTTAAGAAGGTTTCTGGTGT+TGG | - | chr8.1:64394946-64394965 | MS.gene016580:CDS | 35.0% |
| !!! | GATAGGTTCTTTTTCGGTTA+TGG | + | chr8.1:64394010-64394029 | None:intergenic | 35.0% |
| !!! | GATTCGGGTTTTTTCTGAAA+CGG | + | chr8.1:64393833-64393852 | None:intergenic | 35.0% |
| !!! | GTTCTTTTTCGGTTATGGAA+AGG | + | chr8.1:64394005-64394024 | None:intergenic | 35.0% |
| !!! | TTTTGAGTTGATGAGAGTGA+TGG | - | chr8.1:64395167-64395186 | MS.gene016580:CDS | 35.0% |
| AAGAATAAAGGGTTTCAGCG+AGG | + | chr8.1:64393939-64393958 | None:intergenic | 40.0% | |
| AAGTGTTAAAGGGCAGAGTA+AGG | - | chr8.1:64395143-64395162 | MS.gene016580:CDS | 40.0% | |
| ACAATCAACGAAAACAACGC+CGG | + | chr8.1:64394327-64394346 | None:intergenic | 40.0% | |
| AGCTTACGAACTATGAAGCA+CGG | - | chr8.1:64394574-64394593 | MS.gene016580:intron | 40.0% | |
| CTATGAAACACAGACACTTC+TGG | + | chr8.1:64394743-64394762 | None:intergenic | 40.0% | |
| CTTAATCTTGTGAGATGTGG+TGG | - | chr8.1:64395042-64395061 | MS.gene016580:CDS | 40.0% | |
| GATCTACTCGATCTTACTAC+TGG | - | chr8.1:64394979-64394998 | MS.gene016580:CDS | 40.0% | |
| GATGATTATCGGACTGTTGT+TGG | - | chr8.1:64394150-64394169 | MS.gene016580:CDS | 40.0% | |
| GGATGGAATTGCTGATGTTA+AGG | - | chr8.1:64395113-64395132 | MS.gene016580:CDS | 40.0% | |
| TTTCGTCGGTGGATGATTAT+CGG | - | chr8.1:64394139-64394158 | MS.gene016580:CDS | 40.0% | |
| ! | CTGTAGCGTTTTCTTGAGAA+GGG | + | chr8.1:64393969-64393988 | None:intergenic | 40.0% |
| !! | AAGTGTTGAGGCGTTTAAGA+AGG | - | chr8.1:64394933-64394952 | MS.gene016580:CDS | 40.0% |
| !! | TTACTACTGGTTCGAGTATG+AGG | - | chr8.1:64394992-64395011 | MS.gene016580:CDS | 40.0% |
| AAGAAGGCTGTGAATCGTAG+CGG | + | chr8.1:64394121-64394140 | None:intergenic | 45.0% | |
| AATAACCTGCGCAATAACCG+CGG | + | chr8.1:64394385-64394404 | None:intergenic | 45.0% | |
| AATCATCCACCGACGAAAGA+AGG | + | chr8.1:64394137-64394156 | None:intergenic | 45.0% | |
| ACATCTCTGATATAGGTCGC+CGG | - | chr8.1:64394901-64394920 | MS.gene016580:CDS | 45.0% | |
| ACCATCGTAGCACGATTCAA+CGG | + | chr8.1:64394288-64394307 | None:intergenic | 45.0% | |
| CTATGAAGCACGGAATGACA+TGG | - | chr8.1:64394584-64394603 | MS.gene016580:intron | 45.0% | |
| CTCGATGAGTGATTCGATTC+GGG | + | chr8.1:64393848-64393867 | None:intergenic | 45.0% | |
| GATTCACAGCCTTCTTTCGT+CGG | - | chr8.1:64394125-64394144 | MS.gene016580:CDS | 45.0% | |
| GATTGTTGAAGATGCTTCCG+CGG | - | chr8.1:64394365-64394384 | MS.gene016580:intron | 45.0% | |
| GCTCGATGAGTGATTCGATT+CGG | + | chr8.1:64393849-64393868 | None:intergenic | 45.0% | |
| GTAAGGAATTGCGCCTGATT+CGG | + | chr8.1:64393917-64393936 | None:intergenic | 45.0% | |
| TAAAGGGTTTCAGCGAGGTA+AGG | + | chr8.1:64393934-64393953 | None:intergenic | 45.0% | |
| ! | GAGGCGTTTAAGAAGGTTTC+TGG | - | chr8.1:64394940-64394959 | MS.gene016580:CDS | 45.0% |
| ! | GCTGTAGCGTTTTCTTGAGA+AGG | + | chr8.1:64393970-64393989 | None:intergenic | 45.0% |
| ! | GTTCGTAGTCATGGTGATGT+TGG | - | chr8.1:64395234-64395253 | MS.gene016580:CDS | 45.0% |
| ! | TGATTCGGCTATTATGGGTC+GGG | + | chr8.1:64393902-64393921 | None:intergenic | 45.0% |
| !! | CTGATTCGGCTATTATGGGT+CGG | + | chr8.1:64393903-64393922 | None:intergenic | 45.0% |
| !! | GAGTTGATGAGAGTGATGGT+TGG | - | chr8.1:64395171-64395190 | MS.gene016580:CDS | 45.0% |
| !! | GATTATTAGCGGTGTCGACA+TGG | + | chr8.1:64394616-64394635 | None:intergenic | 45.0% |
| !! | GGTTCAGTTTGGTGTTGTTC+CGG | - | chr8.1:64394305-64394324 | MS.gene016580:intron | 45.0% |
| !! | GTTGGTGATGTTCGTAGTCA+CGG | - | chr8.1:64395189-64395208 | MS.gene016580:CDS | 45.0% |
| AACGAATCCTTCACCGTCCT+TGG | + | chr8.1:64394237-64394256 | None:intergenic | 50.0% | |
| ACTGACATGTGTCCGACACT+GGG | - | chr8.1:64394694-64394713 | MS.gene016580:intron | 50.0% | |
| CACGGTGATGTTCGTAGTCA+CGG | - | chr8.1:64395207-64395226 | MS.gene016580:CDS | 50.0% | |
| CACGGTGATGTTCGTAGTCA+TGG | - | chr8.1:64395207-64395226 | MS.gene016580:CDS | 50.0% | |
| CGACCCATAATAGCCGAATC+AGG | - | chr8.1:64393901-64393920 | MS.gene016580:CDS | 50.0% | |
| CGTGCTACGATGGTTCAGTT+TGG | - | chr8.1:64394294-64394313 | MS.gene016580:intron | 50.0% | |
| CTCAACACTTTCCTCGCAAC+CGG | + | chr8.1:64394923-64394942 | None:intergenic | 50.0% | |
| GACGAGGGAAAATGCAGTGT+CGG | - | chr8.1:64395014-64395033 | MS.gene016580:CDS | 50.0% | |
| GACGGTGAAGGATTCGTTGA+AGG | - | chr8.1:64394239-64394258 | MS.gene016580:intron | 50.0% | |
| TCCGTTGAATCGTGCTACGA+TGG | - | chr8.1:64394284-64394303 | MS.gene016580:intron | 50.0% | |
| TGGTTCGAGTATGAGGACGA+GGG | - | chr8.1:64394999-64395018 | MS.gene016580:CDS | 50.0% | |
| ! | TGTGAGATGTGGTGGAGATG+TGG | - | chr8.1:64395050-64395069 | MS.gene016580:CDS | 50.0% |
| !! | GCGCCTGATTCGGCTATTAT+GGG | + | chr8.1:64393907-64393926 | None:intergenic | 50.0% |
| !! | GCTATTATGGGTCGGGTTGA+TGG | + | chr8.1:64393895-64393914 | None:intergenic | 50.0% |
| !! | TGCGCCTGATTCGGCTATTA+TGG | + | chr8.1:64393908-64393927 | None:intergenic | 50.0% |
| AAGGCTGTGAATCGTAGCGG+CGG | + | chr8.1:64394118-64394137 | None:intergenic | 55.0% | |
| CACTGACATGTGTCCGACAC+TGG | - | chr8.1:64394693-64394712 | MS.gene016580:intron | 55.0% | |
| CGCTGGAGATGTAAGAGACG+CGG | - | chr8.1:64395074-64395093 | MS.gene016580:CDS | 55.0% | |
| GAACCTATCATGTCCACGCG+CGG | - | chr8.1:64394021-64394040 | MS.gene016580:CDS | 55.0% | |
| GAATCCTTCACCGTCCTTGG+CGG | + | chr8.1:64394234-64394253 | None:intergenic | 55.0% | |
| TCACAGCCTTCTTTCGTCGG+TGG | - | chr8.1:64394128-64394147 | MS.gene016580:CDS | 55.0% | |
| TGGAGATGTAAGAGACGCGG+TGG | - | chr8.1:64395077-64395096 | MS.gene016580:CDS | 55.0% | |
| ! | CTGGTTCGAGTATGAGGACG+AGG | - | chr8.1:64394998-64395017 | MS.gene016580:CDS | 55.0% |
| !! | ATTAGCGGTGTCGACATGGC+AGG | + | chr8.1:64394612-64394631 | None:intergenic | 55.0% |
| !! | CGGTTGCGAGGAAAGTGTTG+AGG | - | chr8.1:64394921-64394940 | MS.gene016580:CDS | 55.0% |
| !! | GGTTTCTGGTGTTGGAGTGC+TGG | - | chr8.1:64394954-64394973 | MS.gene016580:CDS | 55.0% |
| !! | TTCTGGTGTTGGAGTGCTGG+CGG | - | chr8.1:64394957-64394976 | MS.gene016580:CDS | 55.0% |
| ACACCGCGCGTGGACATGAT+AGG | + | chr8.1:64394027-64394046 | None:intergenic | 60.0% | |
| CCGTCCTTGGCGGTGAAGAA+CGG | + | chr8.1:64394224-64394243 | None:intergenic | 60.0% | |
| CCGTTCTTCACCGCCAAGGA+CGG | - | chr8.1:64394221-64394240 | MS.gene016580:intron | 60.0% | |
| GTAAGAGACGCGGTGGCGTT+TGG | - | chr8.1:64395084-64395103 | MS.gene016580:CDS | 60.0% | |
| GTCACCGTTCTTCACCGCCA+AGG | - | chr8.1:64394217-64394236 | MS.gene016580:intron | 60.0% | |
| TCCCAGTCGTGTCCCAGTGT+CGG | + | chr8.1:64394709-64394728 | None:intergenic | 60.0% | |
| TCCGACACTGGGACACGACT+GGG | - | chr8.1:64394705-64394724 | MS.gene016580:CDS | 60.0% | |
| TGCTTCCGCGGTTATTGCGC+AGG | - | chr8.1:64394377-64394396 | MS.gene016580:intron | 60.0% | |
| TTCACCGCCAAGGACGGTGA+AGG | - | chr8.1:64394227-64394246 | MS.gene016580:intron | 60.0% | |
| ! | GATATAGGTCGCCGGTTGCG+AGG | - | chr8.1:64394909-64394928 | MS.gene016580:CDS | 60.0% |
| ! | TGTGGTGGAGATGTGGTCGC+TGG | - | chr8.1:64395057-64395076 | MS.gene016580:CDS | 60.0% |
| !! | GTGGCGTTTGGTGCGTTGGA+TGG | - | chr8.1:64395096-64395115 | MS.gene016580:CDS | 60.0% |
| ATACTAGCGTCCGCACCGCG+CGG | + | chr8.1:64393798-64393817 | None:intergenic | 65.0% | |
| GCTGTGAATCGTAGCGGCGG+CGG | + | chr8.1:64394115-64394134 | None:intergenic | 65.0% | |
| GTCCGACACTGGGACACGAC+TGG | - | chr8.1:64394704-64394723 | MS.gene016580:CDS | 65.0% | |
| !! | AGCGGCGGCGGATTGAACAG+CGG | + | chr8.1:64394103-64394122 | None:intergenic | 65.0% |
| GGATTGAACAGCGGCGGCGG+CGG | + | chr8.1:64394094-64394113 | None:intergenic | 70.0% | |
| !! | CGCGGTGGCGTTTGGTGCGT+TGG | - | chr8.1:64395092-64395111 | MS.gene016580:CDS | 70.0% |
| !! | GGCGGATTGAACAGCGGCGG+CGG | + | chr8.1:64394097-64394116 | None:intergenic | 70.0% |
| !! | GGCGGCGGATTGAACAGCGG+CGG | + | chr8.1:64394100-64394119 | None:intergenic | 70.0% |
| ACGCAAACCGCCGCGCGGTG+CGG | - | chr8.1:64393785-64393804 | MS.gene016580:CDS | 75.0% | |
| CGCGTCGAGAACACCGCGCG+TGG | + | chr8.1:64394037-64394056 | None:intergenic | 75.0% | |
| TTGAACAGCGGCGGCGGCGG+AGG | + | chr8.1:64394091-64394110 | None:intergenic | 75.0% | |
| ! | CTAGCGTCCGCACCGCGCGG+CGG | + | chr8.1:64393795-64393814 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 64393781 | 64395317 | 64393781 | ID=MS.gene016580 |
| chr8.1 | mRNA | 64393781 | 64395317 | 64393781 | ID=MS.gene016580.t1;Parent=MS.gene016580 |
| chr8.1 | exon | 64394700 | 64395317 | 64394700 | ID=MS.gene016580.t1.exon1;Parent=MS.gene016580.t1 |
| chr8.1 | CDS | 64394700 | 64395317 | 64394700 | ID=cds.MS.gene016580.t1;Parent=MS.gene016580.t1 |
| chr8.1 | exon | 64393781 | 64394182 | 64393781 | ID=MS.gene016580.t1.exon2;Parent=MS.gene016580.t1 |
| chr8.1 | CDS | 64393781 | 64394182 | 64393781 | ID=cds.MS.gene016580.t1;Parent=MS.gene016580.t1 |
| Gene Sequence |
| Protein sequence |
