AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene016715

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene016715.t1 MTR_5g085200 99.526 422 2 0 1 422 1 422 0.0 872
MS.gene016715.t1 MTR_7g079840 43.440 343 154 10 40 350 13 347 6.73e-90 278
MS.gene016715.t1 MTR_7g079840 43.440 343 154 10 40 350 23 357 8.76e-90 278
MS.gene016715.t1 MTR_3g075190 38.806 335 163 11 44 358 171 483 1.70e-66 221
MS.gene016715.t1 MTR_4g104260 37.695 321 169 11 44 347 231 537 3.26e-66 221
MS.gene016715.t1 MTR_1g088875 35.780 327 173 8 19 318 27 343 8.48e-63 206
MS.gene016715.t1 MTR_1g088875 55.263 76 30 2 271 343 92 166 2.92e-18 85.9
MS.gene016715.t1 MTR_1g088875 35.780 327 173 8 19 318 27 343 9.06e-63 206
MS.gene016715.t1 MTR_1g088875 55.263 76 30 2 271 343 92 166 3.11e-18 85.9
MS.gene016715.t1 MTR_1g088875 35.780 327 173 8 19 318 27 343 1.02e-62 206
MS.gene016715.t1 MTR_1g088875 55.263 76 30 2 271 343 92 166 2.96e-18 85.9
MS.gene016715.t1 MTR_2g019740 37.681 345 170 12 44 348 44 383 2.33e-60 204
MS.gene016715.t1 MTR_2g019740 44.578 83 45 1 84 165 42 124 3.72e-18 86.7
MS.gene016715.t1 MTR_2g019740 34.615 130 36 2 269 349 43 172 1.15e-14 76.3
MS.gene016715.t1 MTR_8g446930 33.524 349 134 9 38 343 31 324 7.64e-56 188
MS.gene016715.t1 MTR_8g446930 33.428 353 137 9 34 343 177 474 6.94e-55 190
MS.gene016715.t1 MTR_4g119280 36.686 338 155 13 44 343 43 359 1.37e-47 167
MS.gene016715.t1 MTR_4g119280 34.688 320 177 12 26 319 66 379 2.49e-35 134
MS.gene016715.t1 MTR_4g119280 48.148 81 42 0 84 164 41 121 6.65e-19 88.2
MS.gene016715.t1 MTR_4g119280 45.570 79 42 1 269 346 42 120 4.78e-15 76.6
MS.gene016715.t1 MTR_4g119280 36.686 338 155 13 44 343 43 359 5.64e-47 169
MS.gene016715.t1 MTR_4g119280 35.942 345 189 12 26 344 66 404 1.52e-45 165
MS.gene016715.t1 MTR_4g119280 48.148 81 42 0 84 164 41 121 9.98e-19 88.6
MS.gene016715.t1 MTR_4g119280 45.570 79 42 1 269 346 42 120 6.06e-15 77.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene016715.t1 AT1G04990 44.656 421 192 10 1 403 5 402 3.41e-115 343
MS.gene016715.t1 AT1G04990 44.656 421 192 10 1 403 5 402 3.41e-115 343
MS.gene016715.t1 AT1G04990 44.656 421 192 10 1 403 5 402 3.41e-115 343
MS.gene016715.t1 AT2G32930 49.030 361 146 10 1 345 1 339 7.77e-109 328
MS.gene016715.t1 AT1G04990 42.482 419 184 10 1 403 5 382 2.50e-106 319
MS.gene016715.t1 AT2G32930 47.922 361 146 11 1 345 1 335 2.82e-103 314
MS.gene016715.t1 AT2G32930 44.893 421 173 14 27 412 1 397 2.35e-102 311
MS.gene016715.t1 AT3G02830 39.066 407 186 17 21 392 18 397 5.22e-84 263
MS.gene016715.t1 AT3G02830 40.051 392 177 16 36 392 9 377 1.25e-83 261
MS.gene016715.t1 AT2G47850 38.701 354 183 9 19 350 27 368 1.90e-80 256
MS.gene016715.t1 AT2G47850 38.701 354 183 9 19 350 27 368 1.90e-80 256
MS.gene016715.t1 AT5G18550 42.683 328 154 13 44 342 16 338 2.27e-80 254
MS.gene016715.t1 AT5G18550 39.175 97 48 3 269 354 15 111 8.36e-16 79.3
MS.gene016715.t1 AT5G18550 42.683 328 154 13 44 342 48 370 2.55e-80 255
MS.gene016715.t1 AT5G18550 39.175 97 48 3 269 354 47 143 6.63e-16 79.7
MS.gene016715.t1 AT5G18550 42.683 328 154 13 44 342 48 370 5.04e-80 254
MS.gene016715.t1 AT5G18550 39.175 97 48 3 269 354 47 143 8.03e-16 79.7
MS.gene016715.t1 AT5G16540 39.601 351 170 12 44 383 39 358 1.94e-77 245
MS.gene016715.t1 AT5G16540 43.038 79 44 1 266 343 35 113 1.86e-14 75.1
MS.gene016715.t1 AT5G16540 36.471 85 46 2 37 115 233 315 9.93e-14 72.8
MS.gene016715.t1 AT5G16540 39.601 351 170 12 44 383 18 337 2.08e-77 244
MS.gene016715.t1 AT5G16540 43.038 79 44 1 266 343 14 92 1.72e-14 74.7
MS.gene016715.t1 AT5G16540 36.471 85 46 2 37 115 212 294 1.25e-13 72.4
MS.gene016715.t1 AT3G06410 38.843 363 169 12 20 342 29 378 2.51e-77 247
MS.gene016715.t1 AT3G06410 32.787 122 69 2 224 343 16 126 5.58e-16 80.1
MS.gene016715.t1 AT1G04990 41.538 325 154 8 96 403 16 321 1.23e-75 239
MS.gene016715.t1 AT1G04990 40.909 88 51 1 74 160 165 252 1.39e-13 71.6
MS.gene016715.t1 AT5G18550 41.284 327 147 13 44 342 48 357 4.49e-73 236
MS.gene016715.t1 AT5G18550 39.175 97 48 3 269 354 47 143 6.51e-16 79.7
MS.gene016715.t1 AT5G16540 38.329 347 173 11 44 383 39 351 1.71e-72 232
MS.gene016715.t1 AT5G16540 43.038 79 44 1 266 343 35 113 1.59e-14 75.1
MS.gene016715.t1 AT5G16540 35.366 82 44 2 37 115 233 308 8.52e-12 66.6
MS.gene016715.t1 AT3G48440 39.450 327 158 14 44 344 107 419 2.05e-67 221
MS.gene016715.t1 AT3G48440 52.500 80 37 1 84 162 341 420 2.53e-20 93.2
MS.gene016715.t1 AT5G63260 36.494 348 189 11 19 344 70 407 1.12e-66 219
MS.gene016715.t1 AT1G04990 38.700 323 146 8 96 403 16 301 1.55e-66 214
MS.gene016715.t1 AT5G63260 35.989 364 185 12 19 344 70 423 3.30e-65 216
MS.gene016715.t1 AT2G47850 34.278 353 174 11 19 350 27 342 3.09e-61 205
MS.gene016715.t1 AT5G16540 39.576 283 132 10 44 318 18 269 4.15e-59 194
MS.gene016715.t1 AT5G16540 47.500 80 40 1 266 343 59 138 8.95e-20 89.0
MS.gene016715.t1 AT5G16540 43.038 79 44 1 266 343 14 92 1.04e-14 74.3
MS.gene016715.t1 AT3G12680 36.232 345 159 12 44 343 171 499 3.12e-56 194
MS.gene016715.t1 AT3G12680 43.023 86 38 2 41 115 414 499 3.62e-16 80.9
MS.gene016715.t1 AT2G47850 35.918 245 137 6 124 350 4 246 1.44e-42 153
MS.gene016715.t1 AT2G47850 49.398 83 41 1 79 160 157 239 6.80e-22 96.7
MS.gene016715.t1 AT2G47850 41.975 81 33 2 44 115 164 239 2.25e-15 77.4
MS.gene016715.t1 AT1G48195 46.753 77 39 1 268 342 4 80 3.56e-20 84.7
MS.gene016715.t1 AT1G48195 46.753 77 40 1 84 159 4 80 2.05e-17 77.0
MS.gene016715.t1 AT1G48195 48.000 75 35 1 44 114 6 80 1.38e-16 74.7
MS.gene016715.t1 AT1G29600 44.578 83 36 4 41 122 125 198 6.16e-15 75.9
MS.gene016715.t1 AT1G29600 44.578 83 36 4 41 122 119 192 7.11e-15 75.5

Find 112 sgRNAs with CRISPR-Local

Find 235 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTGTGCTATCCTTTCTTT+AGG 0.127413 5.3:+68815046 None:intergenic
TGCAGCACCTCTCCTGTCTT+TGG 0.215706 5.3:+68816142 None:intergenic
CCGGCGGGAGAGACACTTTC+TGG 0.243331 5.3:-68815178 MS.gene016715:CDS
AGACCCAGTTCTCATGTAAT+AGG 0.260132 5.3:+68815952 None:intergenic
AGAACTGGGTCTTGCAAGTT+TGG 0.276971 5.3:-68815941 MS.gene016715:CDS
AGATTTCAGGTTACTCAATA+TGG 0.278926 5.3:-68817297 MS.gene016715:intron
TGGACAGTTGAAAGCCTTCT+TGG 0.292560 5.3:+68814548 None:intergenic
TCTGGTTGCTCAGGTCTATC+TGG 0.304316 5.3:+68815130 None:intergenic
AGCACCGGAACATGCAAATA+TGG 0.322651 5.3:-68815091 MS.gene016715:CDS
TTTGTGCTATCCTTTCTTTA+GGG 0.324288 5.3:+68815047 None:intergenic
TGCTCTTATTACAGAATCTA+TGG 0.326952 5.3:-68814686 MS.gene016715:CDS
GCAGCACCTCTCCTGTCTTT+GGG 0.333423 5.3:+68816143 None:intergenic
TTCGTATTGCAGAAGCTATT+CGG 0.340006 5.3:-68817654 MS.gene016715:intron
CCGAGAATGTCATATTTATC+TGG 0.351902 5.3:-68815782 MS.gene016715:CDS
ACCTTCGACCGAGTCTTTAC+AGG 0.352984 5.3:-68814411 MS.gene016715:CDS
ATCTATGGAGTATGCAAGTT+TGG 0.357289 5.3:-68814671 MS.gene016715:CDS
CCAGATAAATATGACATTCT+CGG 0.368337 5.3:+68815782 None:intergenic
CCACAACAGGCAGCTTCCTT+TGG 0.370576 5.3:-68815896 MS.gene016715:CDS
TCCACAACTGTTACTTCATC+AGG 0.377937 5.3:-68815842 MS.gene016715:CDS
GCATTATGCCTGCGCTGAGC+TGG 0.382644 5.3:-68815712 MS.gene016715:CDS
GAGGGAGGGGACGCCGCCAC+TGG 0.385507 5.3:+68815863 None:intergenic
CTATCCTTTCTTTAGGGTGG+TGG 0.386879 5.3:+68815053 None:intergenic
ATAAAACCAGTAGGCATTGC+AGG 0.387637 5.3:+68815232 None:intergenic
AAGACAGGAACATGTAAGTA+TGG 0.393613 5.3:-68816188 MS.gene016715:CDS
TGTCCCTATTACATGAGAAC+TGG 0.394120 5.3:-68815956 MS.gene016715:CDS
CCCGTTGTCTTCAATACTTT+AGG 0.398288 5.3:-68816119 MS.gene016715:CDS
CTCAAATAATATACGCAGTC+AGG 0.416206 5.3:+68817556 None:intergenic
CTGACTGCGTATATTATTTG+AGG 0.418766 5.3:-68817555 MS.gene016715:CDS
AAAGCCTTCTTGGATTAGTA+AGG 0.427107 5.3:+68814558 None:intergenic
TATTTACAGTCTGGTTGCTC+AGG 0.430194 5.3:+68815121 None:intergenic
GCCTCAATCAATGCCTTATC+CGG 0.436673 5.3:-68817593 MS.gene016715:CDS
AATGCACTTACAGGTCTCAT+AGG 0.440267 5.3:+68814998 None:intergenic
CTCATAAAGTATTTACAGTC+TGG 0.442202 5.3:+68815112 None:intergenic
AAGAACTTCCTGAGAGAGTT+GGG 0.442954 5.3:-68817272 MS.gene016715:CDS
GCAGGAAACCCACCAGCATA+TGG 0.444203 5.3:+68815815 None:intergenic
TCAGGTTGCCCAACTCTCTC+AGG 0.445004 5.3:+68817264 None:intergenic
TTCTGAGAGATAGCCACAAC+TGG 0.446204 5.3:+68814626 None:intergenic
TTTAGGTCTTCCCATGCGTC+AGG 0.446654 5.3:-68816102 MS.gene016715:intron
GACCCAGTTCTCATGTAATA+GGG 0.459797 5.3:+68815953 None:intergenic
GGCATAATGCCTTGTGAAGA+AGG 0.459870 5.3:+68815725 None:intergenic
CAACAGGCAGCTTCCTTTGG+AGG 0.460678 5.3:-68815893 MS.gene016715:CDS
AATAAGCATACCTCACAATC+AGG 0.465727 5.3:+68817246 None:intergenic
AGATCCATATTTGCATGTTC+CGG 0.472187 5.3:+68815087 None:intergenic
CCATCTGGTGATAACATTGA+AGG 0.474193 5.3:-68818294 MS.gene016715:intron
AGCTTGTTTAGATGAATCTT+CGG 0.476106 5.3:+68814457 None:intergenic
TGCGTATATTATTTGAGGAC+TGG 0.478797 5.3:-68817550 MS.gene016715:CDS
TCACCAGGTCGATCCGGATA+AGG 0.480066 5.3:+68817580 None:intergenic
GGACTGGAATGTGTGGTTAC+GGG 0.482004 5.3:-68817534 MS.gene016715:CDS
CAAGTTTCATCATCCACAAC+AGG 0.488215 5.3:-68815909 MS.gene016715:CDS
TCAGGTTCACCAGGTCGATC+CGG 0.491203 5.3:+68817574 None:intergenic
AATGTCATATTTATCTGGAC+AGG 0.494113 5.3:-68815777 MS.gene016715:CDS
ATTAACCCTGCAATGCCTAC+TGG 0.496129 5.3:-68815238 MS.gene016715:CDS
AATGCTGGTTCTAATCCATC+TGG 0.496458 5.3:-68818309 MS.gene016715:CDS
ATTACAGGTGAAATGTTAGC+AGG 0.497677 5.3:+68817490 None:intergenic
CCTAAAGTATTGAAGACAAC+GGG 0.502456 5.3:+68816119 None:intergenic
CCAAAGGAAGCTGCCTGTTG+TGG 0.502820 5.3:+68815896 None:intergenic
ATGGAGATGTCTCGGTTGGT+TGG 0.505736 5.3:+68814528 None:intergenic
GTGCTATCCTTTCTTTAGGG+TGG 0.514914 5.3:+68815050 None:intergenic
AGGAGGCACATAAGATTGAA+TGG 0.519059 5.3:+68815754 None:intergenic
GAAGAACTTCCTGAGAGAGT+TGG 0.521193 5.3:-68817273 MS.gene016715:CDS
AGGACTGGAATGTGTGGTTA+CGG 0.521390 5.3:-68817535 MS.gene016715:CDS
CCTTCAATGTTATCACCAGA+TGG 0.522380 5.3:+68818294 None:intergenic
AGTAACAGTTGTGGAGGGAG+GGG 0.529224 5.3:+68815850 None:intergenic
TTCGATGGAGATGTCTCGGT+TGG 0.530171 5.3:+68814524 None:intergenic
AATATCATCATCCCAAAGAC+AGG 0.531632 5.3:-68816154 MS.gene016715:CDS
TTGTCAGTTGATTGTTTCGA+TGG 0.531763 5.3:+68814509 None:intergenic
ATGCTGGTGGGTTTCCTGCA+TGG 0.533086 5.3:-68815811 MS.gene016715:CDS
TGTCTACGACTACATGAATC+CGG 0.541765 5.3:-68815197 MS.gene016715:CDS
TATACGCAGTCAGGTTCACC+AGG 0.548463 5.3:+68817565 None:intergenic
TGTAAATACTTTATGAGCAC+CGG 0.550440 5.3:-68815106 MS.gene016715:CDS
AGAGACACTTTCTGGTGGAC+AGG 0.555997 5.3:-68815170 MS.gene016715:CDS
AGTTCCACCACCCTAAAGAA+AGG 0.558473 5.3:-68815057 MS.gene016715:CDS
GAAGTAACAGTTGTGGAGGG+AGG 0.561560 5.3:+68815848 None:intergenic
AAGTAACAGTTGTGGAGGGA+GGG 0.565711 5.3:+68815849 None:intergenic
TTGTTTCGATGGAGATGTCT+CGG 0.567749 5.3:+68814520 None:intergenic
CAAATTTGATCATCCAGTTG+TGG 0.569323 5.3:-68814639 MS.gene016715:CDS
GGATGTACAAACCTGACGCA+TGG 0.570494 5.3:+68816091 None:intergenic
TCCGGATAAGGCATTGATTG+AGG 0.571672 5.3:+68817592 None:intergenic
TAGTTGCTCCAGCTCAGCGC+AGG 0.575573 5.3:+68815704 None:intergenic
CTCTCCTTACTAATCCAAGA+AGG 0.580301 5.3:-68814562 MS.gene016715:CDS
GCTGAGCTGGAGCAACTACA+TGG 0.582157 5.3:-68815699 MS.gene016715:intron
GGATGATCAAATTTGCATGT+TGG 0.583840 5.3:+68814647 None:intergenic
TCCTGTAAAGACTCGGTCGA+AGG 0.583942 5.3:+68814410 None:intergenic
CCAGAAAGTGTCTCTCCCGC+CGG 0.585264 5.3:+68815178 None:intergenic
GATGTACAAACCTGACGCAT+GGG 0.586804 5.3:+68816092 None:intergenic
ACATTATCAATTAATCCACT+TGG 0.589067 5.3:-68815025 MS.gene016715:CDS
ACCTGATGAAGTAACAGTTG+TGG 0.598830 5.3:+68815841 None:intergenic
GTCCCTATTACATGAGAACT+GGG 0.603851 5.3:-68815955 MS.gene016715:CDS
TGGAGGAGCTTATCCAGTGG+CGG 0.605551 5.3:-68815876 MS.gene016715:CDS
ATGCCTTATCCGGATCGACC+TGG 0.607838 5.3:-68817583 MS.gene016715:CDS
TGATGAAGTAACAGTTGTGG+AGG 0.607944 5.3:+68815844 None:intergenic
GAATACTGATAGAGTAGGCG+AGG 0.609226 5.3:+68814592 None:intergenic
ATTCTCGGCATTGACCATGC+AGG 0.609928 5.3:+68815797 None:intergenic
GCATCGAATACTGATAGAGT+AGG 0.610445 5.3:+68814587 None:intergenic
GTGGCTATCTCTCAGAACTA+CGG 0.612160 5.3:-68814620 MS.gene016715:CDS
TACGACTACATGAATCCGGC+GGG 0.613456 5.3:-68815193 MS.gene016715:CDS
CACTGGATAAGCTCCTCCAA+AGG 0.616300 5.3:+68815880 None:intergenic
TTAGATCCAATAAAACCAGT+AGG 0.616664 5.3:+68815223 None:intergenic
AGTTTATTCCTGTAAAGACT+CGG 0.629022 5.3:+68814403 None:intergenic
GCGGGAGAGACACTTTCTGG+TGG 0.637718 5.3:-68815175 MS.gene016715:CDS
TAAAACCAGTAGGCATTGCA+GGG 0.641286 5.3:+68815233 None:intergenic
CTTTGGAGGAGCTTATCCAG+TGG 0.642465 5.3:-68815879 MS.gene016715:CDS
TTACAGGTGAAATGTTAGCA+GGG 0.642989 5.3:+68817491 None:intergenic
AGTTGGGCAACCTGATTGTG+AGG 0.647405 5.3:-68817256 MS.gene016715:intron
ACCTAAAGTATTGAAGACAA+CGG 0.650733 5.3:+68816118 None:intergenic
TATTTGAGGACTGGAATGTG+TGG 0.661824 5.3:-68817541 MS.gene016715:CDS
CTACGACTACATGAATCCGG+CGG 0.676232 5.3:-68815194 MS.gene016715:CDS
AATACTGATAGAGTAGGCGA+GGG 0.679258 5.3:+68814593 None:intergenic
TGTTAGCAGGGTGATTATAG+CGG 0.683660 5.3:+68817503 None:intergenic
GATGAAGTAACAGTTGTGGA+GGG 0.690790 5.3:+68815845 None:intergenic
CATCATCCCAAAGACAGGAG+AGG 0.694632 5.3:-68816149 MS.gene016715:CDS
GGTCTCATAGGAAGACCAAG+TGG 0.702644 5.3:+68815010 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAGTATCTTAAAATATTA+GGG + chr5.3:68817969-68817988 None:intergenic 10.0%
!!! ATAGTTTATAGATTATTTTT+TGG + chr5.3:68817900-68817919 None:intergenic 10.0%
!!! TAAAAGTATCTTAAAATATT+AGG + chr5.3:68817970-68817989 None:intergenic 10.0%
!!! TTATCTATTTGTTATATAAA+TGG + chr5.3:68816370-68816389 None:intergenic 10.0%
!! ACAAAAAACTAATAAATGTT+TGG + chr5.3:68816016-68816035 None:intergenic 15.0%
!! TACTAATATTAAATTCTGTT+TGG + chr5.3:68816493-68816512 None:intergenic 15.0%
!!! TTATTAGTTTTTTGTTTTGA+TGG - chr5.3:68816021-68816040 MS.gene016715:intron 15.0%
!!! TTTTTTTCACAATAAAAAGT+TGG + chr5.3:68817799-68817818 None:intergenic 15.0%
!! AAAACTAATAAATGTTTGGA+AGG + chr5.3:68816012-68816031 None:intergenic 20.0%
!! ATCTAGTAAATAAATTCTAC+AGG + chr5.3:68816061-68816080 None:intergenic 20.0%
!!! ATCTTGTTAAATTTTCTCAT+TGG - chr5.3:68815379-68815398 MS.gene016715:intron 20.0%
!!! CTATTTTATTTGTCGAAAAA+GGG - chr5.3:68817477-68817496 MS.gene016715:intron 20.0%
! AATTAGCAAGTATTTCAAAC+AGG + chr5.3:68815786-68815805 None:intergenic 25.0%
! AATTAGCTGAAAACATCTTT+AGG - chr5.3:68816437-68816456 MS.gene016715:intron 25.0%
! ACAACTTAATTAAGCGTTTA+TGG - chr5.3:68816309-68816328 MS.gene016715:intron 25.0%
! ACATTATCAATTAATCCACT+TGG - chr5.3:68817717-68817736 MS.gene016715:intron 25.0%
! AGAACACCAATAAATGAAAA+GGG - chr5.3:68815899-68815918 MS.gene016715:CDS 25.0%
! AGTATCTTAAAATATTAGGG+AGG + chr5.3:68817966-68817985 None:intergenic 25.0%
! CAATAAAAAGTTGGAACAAA+CGG + chr5.3:68817790-68817809 None:intergenic 25.0%
! CAGAAAGAAAAATCATGAAA+AGG + chr5.3:68815297-68815316 None:intergenic 25.0%
! GGTTCTATTATTCGTAATTT+AGG - chr5.3:68815400-68815419 MS.gene016715:intron 25.0%
! TAGAACACCAATAAATGAAA+AGG - chr5.3:68815898-68815917 MS.gene016715:CDS 25.0%
! TTAAGAGTGAATTCAAGAAT+AGG - chr5.3:68815616-68815635 MS.gene016715:intron 25.0%
! TTATTACTGCTTGAATTTGT+TGG - chr5.3:68815019-68815038 MS.gene016715:CDS 25.0%
! TTGCTTTATGATGCAATAAA+GGG - chr5.3:68814895-68814914 MS.gene016715:intron 25.0%
! TTTGCTTTATGATGCAATAA+AGG - chr5.3:68814894-68814913 MS.gene016715:intron 25.0%
!! ACTTAATTTTTGTCCTTTTG+TGG - chr5.3:68815721-68815740 MS.gene016715:CDS 25.0%
!! CATTTTCTTCTTAATGCTTA+GGG - chr5.3:68817763-68817782 MS.gene016715:intron 25.0%
!! CTTTTCATGATTTTTCTTTC+TGG - chr5.3:68815295-68815314 MS.gene016715:intron 25.0%
!! GAATTTGTTCAAGGAAAAAA+AGG + chr5.3:68815642-68815661 None:intergenic 25.0%
!! TTGAAAACTTGTCTATTTTC+TGG + chr5.3:68814412-68814431 None:intergenic 25.0%
!! TTTCTTCCCTTTTCATTTAT+TGG + chr5.3:68815908-68815927 None:intergenic 25.0%
!!! AATCTACAATTGTTGCTTTT+AGG - chr5.3:68816752-68816771 MS.gene016715:intron 25.0%
!!! GCTATTTTATTTGTCGAAAA+AGG - chr5.3:68817476-68817495 MS.gene016715:intron 25.0%
!!! TGATGATGTGTTTCTATTTT+TGG - chr5.3:68814637-68814656 MS.gene016715:CDS 25.0%
AATGTCATATTTATCTGGAC+AGG - chr5.3:68816965-68816984 MS.gene016715:intron 30.0%
ACAGTCCAATACAATTAAAC+TGG + chr5.3:68814982-68815001 None:intergenic 30.0%
AGATCTCTCTATGACAATAA+TGG - chr5.3:68816077-68816096 MS.gene016715:intron 30.0%
CACAAAGTTTACTCTTCTAA+TGG - chr5.3:68816700-68816719 MS.gene016715:intron 30.0%
CATGAGCACATAATATATGT+AGG - chr5.3:68815810-68815829 MS.gene016715:CDS 30.0%
CATTAGAAGAGTAAACTTTG+TGG + chr5.3:68816702-68816721 None:intergenic 30.0%
CATTCAACCCCTTTAATAAT+AGG - chr5.3:68815755-68815774 MS.gene016715:CDS 30.0%
CCAGATAAATATGACATTCT+CGG + chr5.3:68816963-68816982 None:intergenic 30.0%
CTATTATTAAAGGGGTTGAA+TGG + chr5.3:68815757-68815776 None:intergenic 30.0%
CTCATACTTCATTAGATTTC+AGG - chr5.3:68815432-68815451 MS.gene016715:intron 30.0%
CTGATCCAGTTTAATTGTAT+TGG - chr5.3:68814974-68814993 MS.gene016715:intron 30.0%
CTTCTTCTTAAATTACGCTA+TGG + chr5.3:68816124-68816143 None:intergenic 30.0%
GGACAAAAATTAAGTGCAAA+AGG + chr5.3:68815716-68815735 None:intergenic 30.0%
GTACTAGAAATATCAAGTTC+AGG - chr5.3:68816182-68816201 MS.gene016715:CDS 30.0%
TAAGAAGAAAATGCACTTAC+AGG + chr5.3:68817756-68817775 None:intergenic 30.0%
TGATTCTATGCAAGTAAACA+TGG + chr5.3:68814828-68814847 None:intergenic 30.0%
TGCTCTTATTACAGAATCTA+TGG - chr5.3:68818056-68818075 MS.gene016715:intron 30.0%
TGTAAATACTTTATGAGCAC+CGG - chr5.3:68817636-68817655 MS.gene016715:CDS 30.0%
TTAGATCCAATAAAACCAGT+AGG + chr5.3:68817522-68817541 None:intergenic 30.0%
TTATTATACTTGATCGCACA+TGG - chr5.3:68814852-68814871 MS.gene016715:intron 30.0%
TTTGTGCTATCCTTTCTTTA+GGG + chr5.3:68817698-68817717 None:intergenic 30.0%
! AAATAAAGCACTTGGTTCAA+AGG + chr5.3:68816676-68816695 None:intergenic 30.0%
! AATAAAGCACTTGGTTCAAA+GGG + chr5.3:68816675-68816694 None:intergenic 30.0%
! AGCTTGTTTAGATGAATCTT+CGG + chr5.3:68818288-68818307 None:intergenic 30.0%
! ATATACTGATTAACCTGGTA+TGG - chr5.3:68817132-68817151 MS.gene016715:intron 30.0%
! ATTCTGTTTGGAATAGCTTA+TGG + chr5.3:68816481-68816500 None:intergenic 30.0%
! CAAAAGATGATTTTCCACAT+TGG + chr5.3:68815986-68816005 None:intergenic 30.0%
! CGCTTAATTAAGTTGTCTAT+AGG + chr5.3:68816305-68816324 None:intergenic 30.0%
! CTCATAAAGTATTTACAGTC+TGG + chr5.3:68817633-68817652 None:intergenic 30.0%
! GCATTTTCTTCTTAATGCTT+AGG - chr5.3:68817762-68817781 MS.gene016715:intron 30.0%
! GTAGAAAGTGAATTTGTTCA+AGG + chr5.3:68815651-68815670 None:intergenic 30.0%
! GTTCTGTTTTCGATGTTAAT+CGG + chr5.3:68817311-68817330 None:intergenic 30.0%
! TGATTTTCTGATTCCTATGT+TGG - chr5.3:68818011-68818030 MS.gene016715:intron 30.0%
! TGTGGAAAAAATAAAGCACT+TGG + chr5.3:68816684-68816703 None:intergenic 30.0%
! TGTTCTGATCATCATTGTTT+TGG - chr5.3:68814548-68814567 MS.gene016715:CDS 30.0%
! TTGCAGTATTTTCTTAAGAC+AGG - chr5.3:68816539-68816558 MS.gene016715:intron 30.0%
! TTTGGAATAGCTTATGGAAA+CGG + chr5.3:68816475-68816494 None:intergenic 30.0%
!! ACCTAAAGTATTGAAGACAA+CGG + chr5.3:68816627-68816646 None:intergenic 30.0%
!! AGATTTCAGGTTACTCAATA+TGG - chr5.3:68815445-68815464 MS.gene016715:intron 30.0%
!! CATTGATTTCCAATCACATT+TGG - chr5.3:68817275-68817294 MS.gene016715:CDS 30.0%
!! TCTCTGAAATATTTAGCCTA+GGG - chr5.3:68815862-68815881 MS.gene016715:CDS 30.0%
!! TTAACTTGTGTGAGTGAAAA+AGG - chr5.3:68814767-68814786 MS.gene016715:intron 30.0%
!! TTCTCTGAAATATTTAGCCT+AGG - chr5.3:68815861-68815880 MS.gene016715:CDS 30.0%
!!! TGTGAGGTATGCTTATTTTT+TGG - chr5.3:68815502-68815521 MS.gene016715:intron 30.0%
AAAAGAAAGAGCTCCATTAC+AGG + chr5.3:68815270-68815289 None:intergenic 35.0%
AAAAGGGAAGAAACTGATGT+AGG - chr5.3:68815915-68815934 MS.gene016715:CDS 35.0%
AAGACAGGAACATGTAAGTA+TGG - chr5.3:68816554-68816573 MS.gene016715:intron 35.0%
AATAAGCATACCTCACAATC+AGG + chr5.3:68815499-68815518 None:intergenic 35.0%
AATAAGTTATGCTGCCAATG+TGG - chr5.3:68815969-68815988 MS.gene016715:CDS 35.0%
AATATCATCATCCCAAAGAC+AGG - chr5.3:68816588-68816607 MS.gene016715:intron 35.0%
ACATAGCCAAACATCCTAAA+AGG + chr5.3:68817365-68817384 None:intergenic 35.0%
ACCAACAACTTTCATTGCAT+TGG + chr5.3:68816273-68816292 None:intergenic 35.0%
AGATCCATATTTGCATGTTC+CGG + chr5.3:68817658-68817677 None:intergenic 35.0%
AGGCGAAGCCTATTATTAAA+GGG + chr5.3:68815766-68815785 None:intergenic 35.0%
ATCTATGGAGTATGCAAGTT+TGG - chr5.3:68818071-68818090 MS.gene016715:intron 35.0%
ATTACAGGTGAAATGTTAGC+AGG + chr5.3:68815255-68815274 None:intergenic 35.0%
ATTCTACAGGACACACTATA+AGG + chr5.3:68816048-68816067 None:intergenic 35.0%
CAAATTTGATCATCCAGTTG+TGG - chr5.3:68818103-68818122 MS.gene016715:intron 35.0%
CAATGTTGTTGTATTGTGTG+AGG - chr5.3:68814717-68814736 MS.gene016715:intron 35.0%
CCGAGAATGTCATATTTATC+TGG - chr5.3:68816960-68816979 MS.gene016715:intron 35.0%
CTCAAATAATATACGCAGTC+AGG + chr5.3:68815189-68815208 None:intergenic 35.0%
CTGACTGCGTATATTATTTG+AGG - chr5.3:68815187-68815206 MS.gene016715:CDS 35.0%
GCGACATCTAGTAGTAAAAA+TGG + chr5.3:68817224-68817243 None:intergenic 35.0%
GGATGATCAAATTTGCATGT+TGG + chr5.3:68818098-68818117 None:intergenic 35.0%
GTTTGTGCTATCCTTTCTTT+AGG + chr5.3:68817699-68817718 None:intergenic 35.0%
TAGACATGAAGCAGTTTCTT+AGG - chr5.3:68815319-68815338 MS.gene016715:intron 35.0%
TCCAATGCAATGAAAGTTGT+TGG - chr5.3:68816269-68816288 MS.gene016715:intron 35.0%
TGCGTATATTATTTGAGGAC+TGG - chr5.3:68815192-68815211 MS.gene016715:CDS 35.0%
TGCTAACATTTCACCTGTAA+TGG - chr5.3:68815254-68815273 MS.gene016715:intron 35.0%
TGGAAATAAGAGACCACAAA+AGG + chr5.3:68815737-68815756 None:intergenic 35.0%
TTACAGGTGAAATGTTAGCA+GGG + chr5.3:68815254-68815273 None:intergenic 35.0%
TTAGCTAAACGAATACACGA+AGG - chr5.3:68817175-68817194 MS.gene016715:intron 35.0%
TTCGTATTGCAGAAGCTATT+CGG - chr5.3:68815088-68815107 MS.gene016715:CDS 35.0%
TTCTGCAATACGAATCACAA+AGG + chr5.3:68815082-68815101 None:intergenic 35.0%
TTGTCAGTTGATTGTTTCGA+TGG + chr5.3:68818236-68818255 None:intergenic 35.0%
TTTCATGAACATGTAGTCTG+TGG - chr5.3:68815349-68815368 MS.gene016715:intron 35.0%
TTTCCTAAACAAGACAAGAC+TGG + chr5.3:68817333-68817352 None:intergenic 35.0%
! ACTGTTTTCAAAAGCTATCC+TGG - chr5.3:68816402-68816421 MS.gene016715:intron 35.0%
! CACACATATACTGATTAACC+TGG - chr5.3:68817127-68817146 MS.gene016715:intron 35.0%
! GACAGTTTTTAAACCATACC+AGG + chr5.3:68817148-68817167 None:intergenic 35.0%
!! AAAGCCTTCTTGGATTAGTA+AGG + chr5.3:68818187-68818206 None:intergenic 35.0%
!! AGACAAGTTTTCAAGAATGC+TGG - chr5.3:68814418-68814437 MS.gene016715:CDS 35.0%
!! CCTAAAGTATTGAAGACAAC+GGG + chr5.3:68816626-68816645 None:intergenic 35.0%
!! GGAAATATTCCTAGCCTTTT+AGG - chr5.3:68817348-68817367 MS.gene016715:intron 35.0%
!!! CTGATCATCATTGTTTTGGT+TGG - chr5.3:68814552-68814571 MS.gene016715:CDS 35.0%
AAGAAACTGATGTAGGTCGT+AGG - chr5.3:68815922-68815941 MS.gene016715:CDS 40.0%
AAGAACTTCCTGAGAGAGTT+GGG - chr5.3:68815470-68815489 MS.gene016715:intron 40.0%
AATACTGATAGAGTAGGCGA+GGG + chr5.3:68818152-68818171 None:intergenic 40.0%
AATGCACTTACAGGTCTCAT+AGG + chr5.3:68817747-68817766 None:intergenic 40.0%
ACCTGATGAAGTAACAGTTG+TGG + chr5.3:68816904-68816923 None:intergenic 40.0%
ACTGAGACTATGCTCATACA+AGG - chr5.3:68815834-68815853 MS.gene016715:CDS 40.0%
AGACCCAGTTCTCATGTAAT+AGG + chr5.3:68816793-68816812 None:intergenic 40.0%
ATTGTATTGGACTGTGAGTG+TGG - chr5.3:68814987-68815006 MS.gene016715:intron 40.0%
ATTTGAGCGCCAAATGTGAT+TGG + chr5.3:68817287-68817306 None:intergenic 40.0%
CAAGTTTCATCATCCACAAC+AGG - chr5.3:68816833-68816852 MS.gene016715:intron 40.0%
CAGGCGAAGCCTATTATTAA+AGG + chr5.3:68815767-68815786 None:intergenic 40.0%
CCATCTGGTGATAACATTGA+AGG - chr5.3:68814448-68814467 MS.gene016715:CDS 40.0%
CCCGTTGTCTTCAATACTTT+AGG - chr5.3:68816623-68816642 MS.gene016715:intron 40.0%
CCTTCAATGTTATCACCAGA+TGG + chr5.3:68814451-68814470 None:intergenic 40.0%
CCTTGTGAAGAAGGCAAAAA+AGG + chr5.3:68817011-68817030 None:intergenic 40.0%
CTAACAATGAACATGTCCCT+AGG + chr5.3:68815881-68815900 None:intergenic 40.0%
CTAATTTCCATAAGCTCTCC+AGG + chr5.3:68816423-68816442 None:intergenic 40.0%
CTCTCCTTACTAATCCAAGA+AGG - chr5.3:68818180-68818199 MS.gene016715:intron 40.0%
CTGAGACTATGCTCATACAA+GGG - chr5.3:68815835-68815854 MS.gene016715:CDS 40.0%
GACCCAGTTCTCATGTAATA+GGG + chr5.3:68816792-68816811 None:intergenic 40.0%
GATGAAGTAACAGTTGTGGA+GGG + chr5.3:68816900-68816919 None:intergenic 40.0%
GCATAAACCACATCCACATT+CGG + chr5.3:68815589-68815608 None:intergenic 40.0%
GCATCGAATACTGATAGAGT+AGG + chr5.3:68818158-68818177 None:intergenic 40.0%
GGCGAAGCCTATTATTAAAG+GGG + chr5.3:68815765-68815784 None:intergenic 40.0%
GTCCCTATTACATGAGAACT+GGG - chr5.3:68816787-68816806 MS.gene016715:intron 40.0%
TACATGCATTCAGTGGTTAC+TGG - chr5.3:68817408-68817427 MS.gene016715:intron 40.0%
TATTTACAGTCTGGTTGCTC+AGG + chr5.3:68817624-68817643 None:intergenic 40.0%
TATTTGAGGACTGGAATGTG+TGG - chr5.3:68815201-68815220 MS.gene016715:CDS 40.0%
TCGTAACTACATGCATTCAG+TGG - chr5.3:68817401-68817420 MS.gene016715:intron 40.0%
TGATGAAGTAACAGTTGTGG+AGG + chr5.3:68816901-68816920 None:intergenic 40.0%
TGTCCCTATTACATGAGAAC+TGG - chr5.3:68816786-68816805 MS.gene016715:intron 40.0%
TGTCTACGACTACATGAATC+CGG - chr5.3:68817545-68817564 MS.gene016715:CDS 40.0%
TGTGAAGAAGGCAAAAAAGG+AGG + chr5.3:68817008-68817027 None:intergenic 40.0%
TGTTAGCAGGGTGATTATAG+CGG + chr5.3:68815242-68815261 None:intergenic 40.0%
TTGTTTCGATGGAGATGTCT+CGG + chr5.3:68818225-68818244 None:intergenic 40.0%
! AGGAGGCACATAAGATTGAA+TGG + chr5.3:68816991-68817010 None:intergenic 40.0%
! ATAAAACCAGTAGGCATTGC+AGG + chr5.3:68817513-68817532 None:intergenic 40.0%
! TAAAACCAGTAGGCATTGCA+GGG + chr5.3:68817512-68817531 None:intergenic 40.0%
! TCATCAGGTTTTCCATATGC+TGG - chr5.3:68816915-68816934 MS.gene016715:intron 40.0%
! TCCACAACTGTTACTTCATC+AGG - chr5.3:68816900-68816919 MS.gene016715:intron 40.0%
!! AATGCTGGTTCTAATCCATC+TGG - chr5.3:68814433-68814452 MS.gene016715:CDS 40.0%
!! GAACCAGTCTTGTCTTGTTT+AGG - chr5.3:68817327-68817346 MS.gene016715:intron 40.0%
!! TTTCTTTCCCTCGTTTTGAG+CGG - chr5.3:68815551-68815570 MS.gene016715:intron 40.0%
!!! CCTTTTTTGCCTTCTTCACA+AGG - chr5.3:68817008-68817027 MS.gene016715:intron 40.0%
!!! GCAATGCCTACTGGTTTTAT+TGG - chr5.3:68817513-68817532 MS.gene016715:CDS 40.0%
!!! TCCTAGCCTTTTAGGATGTT+TGG - chr5.3:68817356-68817375 MS.gene016715:intron 40.0%
AAGCTATCCTGGAGAGCTTA+TGG - chr5.3:68816413-68816432 MS.gene016715:intron 45.0%
AAGTAACAGTTGTGGAGGGA+GGG + chr5.3:68816896-68816915 None:intergenic 45.0%
AGAACTGGGTCTTGCAAGTT+TGG - chr5.3:68816801-68816820 MS.gene016715:intron 45.0%
AGGACTGGAATGTGTGGTTA+CGG - chr5.3:68815207-68815226 MS.gene016715:CDS 45.0%
AGTTCCACCACCCTAAAGAA+AGG - chr5.3:68817685-68817704 MS.gene016715:intron 45.0%
ATTAACCCTGCAATGCCTAC+TGG - chr5.3:68817504-68817523 MS.gene016715:CDS 45.0%
CATGAAACCGAATGTGGATG+TGG - chr5.3:68815579-68815598 MS.gene016715:intron 45.0%
CTGATGTAGGTCGTAGGATA+CGG - chr5.3:68815928-68815947 MS.gene016715:CDS 45.0%
GAAGAACTTCCTGAGAGAGT+TGG - chr5.3:68815469-68815488 MS.gene016715:intron 45.0%
GAATACTGATAGAGTAGGCG+AGG + chr5.3:68818153-68818172 None:intergenic 45.0%
GATGTACAAACCTGACGCAT+GGG + chr5.3:68816653-68816672 None:intergenic 45.0%
GCCAAACATCCTAAAAGGCT+AGG + chr5.3:68817360-68817379 None:intergenic 45.0%
GCCTCAATCAATGCCTTATC+CGG - chr5.3:68815149-68815168 MS.gene016715:CDS 45.0%
GGCATAATGCCTTGTGAAGA+AGG + chr5.3:68817020-68817039 None:intergenic 45.0%
GTGCTTCATGAAACCGAATG+TGG - chr5.3:68815573-68815592 MS.gene016715:intron 45.0%
GTGGCTATCTCTCAGAACTA+CGG - chr5.3:68818122-68818141 MS.gene016715:intron 45.0%
TGGACAGTTGAAAGCCTTCT+TGG + chr5.3:68818197-68818216 None:intergenic 45.0%
! AGCACCGGAACATGCAAATA+TGG - chr5.3:68817651-68817670 MS.gene016715:intron 45.0%
! CAGGTTTTCCATATGCTGGT+GGG - chr5.3:68816919-68816938 MS.gene016715:intron 45.0%
! GTGCTATCCTTTCTTTAGGG+TGG + chr5.3:68817695-68817714 None:intergenic 45.0%
! TCAGGTTTTCCATATGCTGG+TGG - chr5.3:68816918-68816937 MS.gene016715:intron 45.0%
! TCCTATGTTGGTTGTCTGCA+GGG - chr5.3:68818023-68818042 MS.gene016715:intron 45.0%
! TTCCTATGTTGGTTGTCTGC+AGG - chr5.3:68818022-68818041 MS.gene016715:intron 45.0%
! TTCTGAGAGATAGCCACAAC+TGG + chr5.3:68818119-68818138 None:intergenic 45.0%
!! CTATCCTTTCTTTAGGGTGG+TGG + chr5.3:68817692-68817711 None:intergenic 45.0%
!! TCCGGATAAGGCATTGATTG+AGG + chr5.3:68815153-68815172 None:intergenic 45.0%
ACCTTCGACCGAGTCTTTAC+AGG - chr5.3:68818331-68818350 MS.gene016715:CDS 50.0%
AGGTCGTAGGATACGGAATG+AGG - chr5.3:68815935-68815954 MS.gene016715:CDS 50.0%
AGTAACAGTTGTGGAGGGAG+GGG + chr5.3:68816895-68816914 None:intergenic 50.0%
AGTTGGGCAACCTGATTGTG+AGG - chr5.3:68815486-68815505 MS.gene016715:intron 50.0%
ATGGAGATGTCTCGGTTGGT+TGG + chr5.3:68818217-68818236 None:intergenic 50.0%
CACTGGATAAGCTCCTCCAA+AGG + chr5.3:68816865-68816884 None:intergenic 50.0%
CATCATCCCAAAGACAGGAG+AGG - chr5.3:68816593-68816612 MS.gene016715:intron 50.0%
CTACGACTACATGAATCCGG+CGG - chr5.3:68817548-68817567 MS.gene016715:CDS 50.0%
GAAGTAACAGTTGTGGAGGG+AGG + chr5.3:68816897-68816916 None:intergenic 50.0%
GGACTGGAATGTGTGGTTAC+GGG - chr5.3:68815208-68815227 MS.gene016715:CDS 50.0%
GGATGTACAAACCTGACGCA+TGG + chr5.3:68816654-68816673 None:intergenic 50.0%
GGTCTCATAGGAAGACCAAG+TGG + chr5.3:68817735-68817754 None:intergenic 50.0%
TACGACTACATGAATCCGGC+GGG - chr5.3:68817549-68817568 MS.gene016715:CDS 50.0%
TATACGCAGTCAGGTTCACC+AGG + chr5.3:68815180-68815199 None:intergenic 50.0%
TCCCTGCAGACAACCAACAT+AGG + chr5.3:68818027-68818046 None:intergenic 50.0%
TCTGGTTGCTCAGGTCTATC+TGG + chr5.3:68817615-68817634 None:intergenic 50.0%
TTCGATGGAGATGTCTCGGT+TGG + chr5.3:68818221-68818240 None:intergenic 50.0%
TTTAGGTCTTCCCATGCGTC+AGG - chr5.3:68816640-68816659 MS.gene016715:intron 50.0%
! AGAGACACTTTCTGGTGGAC+AGG - chr5.3:68817572-68817591 MS.gene016715:CDS 50.0%
! CTTTGGAGGAGCTTATCCAG+TGG - chr5.3:68816863-68816882 MS.gene016715:intron 50.0%
! TCCTGTAAAGACTCGGTCGA+AGG + chr5.3:68818335-68818354 None:intergenic 50.0%
!! ATGAAGCACCGCTCAAAACG+AGG + chr5.3:68815562-68815581 None:intergenic 50.0%
!! ATTCTCGGCATTGACCATGC+AGG + chr5.3:68816948-68816967 None:intergenic 50.0%
!! TGAAGCACCGCTCAAAACGA+GGG + chr5.3:68815561-68815580 None:intergenic 50.0%
ATGCCTTATCCGGATCGACC+TGG - chr5.3:68815159-68815178 MS.gene016715:CDS 55.0%
CAACAGGCAGCTTCCTTTGG+AGG - chr5.3:68816849-68816868 MS.gene016715:intron 55.0%
CCAAAGGAAGCTGCCTGTTG+TGG + chr5.3:68816849-68816868 None:intergenic 55.0%
CCACAACAGGCAGCTTCCTT+TGG - chr5.3:68816846-68816865 MS.gene016715:intron 55.0%
GCAGCACCTCTCCTGTCTTT+GGG + chr5.3:68816602-68816621 None:intergenic 55.0%
GCAGGAAACCCACCAGCATA+TGG + chr5.3:68816930-68816949 None:intergenic 55.0%
GCTGAGCTGGAGCAACTACA+TGG - chr5.3:68817043-68817062 MS.gene016715:intron 55.0%
TCACCAGGTCGATCCGGATA+AGG + chr5.3:68815165-68815184 None:intergenic 55.0%
TCAGGTTCACCAGGTCGATC+CGG + chr5.3:68815171-68815190 None:intergenic 55.0%
TGCAGCACCTCTCCTGTCTT+TGG + chr5.3:68816603-68816622 None:intergenic 55.0%
TGGAGGAGCTTATCCAGTGG+CGG - chr5.3:68816866-68816885 MS.gene016715:intron 55.0%
! TCAGGTTGCCCAACTCTCTC+AGG + chr5.3:68815481-68815500 None:intergenic 55.0%
!! ATGCTGGTGGGTTTCCTGCA+TGG - chr5.3:68816931-68816950 MS.gene016715:intron 55.0%
GCATTATGCCTGCGCTGAGC+TGG - chr5.3:68817030-68817049 MS.gene016715:intron 60.0%
GCGGGAGAGACACTTTCTGG+TGG - chr5.3:68817567-68817586 MS.gene016715:CDS 60.0%
TAGTTGCTCCAGCTCAGCGC+AGG + chr5.3:68817041-68817060 None:intergenic 60.0%
!! CCAGAAAGTGTCTCTCCCGC+CGG + chr5.3:68817567-68817586 None:intergenic 60.0%
CCGGCGGGAGAGACACTTTC+TGG - chr5.3:68817564-68817583 MS.gene016715:CDS 65.0%
! GAGGGAGGGGACGCCGCCAC+TGG + chr5.3:68816882-68816901 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 68814406 68818358 68814406 ID=MS.gene016715
chr5.3 mRNA 68814406 68818358 68814406 ID=MS.gene016715.t1;Parent=MS.gene016715
chr5.3 exon 68818295 68818358 68818295 ID=MS.gene016715.t1.exon1;Parent=MS.gene016715.t1
chr5.3 CDS 68818295 68818358 68818295 ID=cds.MS.gene016715.t1;Parent=MS.gene016715.t1
chr5.3 exon 68817495 68817664 68817495 ID=MS.gene016715.t1.exon2;Parent=MS.gene016715.t1
chr5.3 CDS 68817495 68817664 68817495 ID=cds.MS.gene016715.t1;Parent=MS.gene016715.t1
chr5.3 exon 68817257 68817310 68817257 ID=MS.gene016715.t1.exon3;Parent=MS.gene016715.t1
chr5.3 CDS 68817257 68817310 68817257 ID=cds.MS.gene016715.t1;Parent=MS.gene016715.t1
chr5.3 exon 68816103 68816219 68816103 ID=MS.gene016715.t1.exon4;Parent=MS.gene016715.t1
chr5.3 CDS 68816103 68816219 68816103 ID=cds.MS.gene016715.t1;Parent=MS.gene016715.t1
chr5.3 exon 68815700 68815990 68815700 ID=MS.gene016715.t1.exon5;Parent=MS.gene016715.t1
chr5.3 CDS 68815700 68815990 68815700 ID=cds.MS.gene016715.t1;Parent=MS.gene016715.t1
chr5.3 exon 68815009 68815266 68815009 ID=MS.gene016715.t1.exon6;Parent=MS.gene016715.t1
chr5.3 CDS 68815009 68815266 68815009 ID=cds.MS.gene016715.t1;Parent=MS.gene016715.t1
chr5.3 exon 68814406 68814720 68814406 ID=MS.gene016715.t1.exon7;Parent=MS.gene016715.t1
chr5.3 CDS 68814406 68814720 68814406 ID=cds.MS.gene016715.t1;Parent=MS.gene016715.t1
Gene Sequence

>MS.gene016715

ATGCCAGAAAATAGACAAGTTTTCAAGAATGCTGGTTCTAATCCATCTGGTGATAACATTGAAGGTAATTCAATGAATGATTGATTTTTCTTTGAATTTTTTCATGTTTTGTGTTATGATTTGTTGTTTATGTTGTTTTTCTTGTTCTGATCATCATTGTTTTGGTTGGAAATATTTTATTTTCATTGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGTGTTTCTATTTTTGGTAGAATGAATTTGATTTGAATTATTTCTATTTTTGTTTTGTTTATGATTGATTCATGCAATGTTGTTGTATTGTGTGAGGTTTGATGATTTTTTTTGAAACTATGAGTTAACTTGTGTGAGTGAAAAAGGTTGCATCAATAGAAAATTATTATTATATTATGATTCCATGTTTACTTGCATAGAATCAAGTGTTATTATACTTGATCGCACATGGTTTTACAAAATTTGTGTACTTTGCTTTATGATGCAATAAAGGGTCGTAATCGTAATCTGCGTATTTTGATTTCAAATTCTTTATGATAGCTTTGAATTTCTGATCCAGTTTAATTGTATTGGACTGTGAGTGTGGTAATTTGTGTTATTACTGCTTGAATTTGTTGGAATGTTTGTTGAGAGATTGTGCAAGATATGTCTGATTCCTTTGTGATTCGTATTGCAGAAGCTATTCGGCGTTTGAAAATCAATAGTACTCGAGACAGAGATGCTGTGCCTCAATCAATGCCTTATCCGGATCGACCTGGTGAACCTGACTGCGTATATTATTTGAGGACTGGAATGTGTGGTTACGGGAGTAACTGCCGCTATAATCACCCTGCTAACATTTCACCTGTAATGGAGCTCTTTCTTTTCTTTCCTTTTCATGATTTTTCTTTCTGGATAGACATGAAGCAGTTTCTTAGGTCAAATATTTCATGAACATGTAGTCTGTGGAATTGTAATCTTGTTAAATTTTCTCATTGGTTCTATTATTCGTAATTTAGGTAAAAGTTTCTCATACTTCATTAGATTTCAGGTTACTCAATATGGTGAAGAACTTCCTGAGAGAGTTGGGCAACCTGATTGTGAGGTATGCTTATTTTTTGGTAACTAAAAATGTATTTGTTGTCATTTTTCTTTCCCTCGTTTTGAGCGGTGCTTCATGAAACCGAATGTGGATGTGGTTTATGCAAGAACTTTAAGAGTGAATTCAAGAATAGGCCTTTTTTTCCTTGAACAAATTCACTTTCTACATATGATATTTTACTATTTTCGTCTGACAGAAGTTTTAGTTTCCTTTTGCACTTAATTTTTGTCCTTTTGTGGTCTCTTATTTCCATTCAACCCCTTTAATAATAGGCTTCGCCTGTTTGAAATACTTGCTAATTCTTACATGAGCACATAATATATGTAGGCACTGAGACTATGCTCATACAAGGGAATTTCTCTGAAATATTTAGCCTAGGGACATGTTCATTGTTAGAACACCAATAAATGAAAAGGGAAGAAACTGATGTAGGTCGTAGGATACGGAATGAGGACGAAAAAATGAATAAGTTATGCTGCCAATGTGGAAAATCATCTTTTGTTTCCTTCCAAACATTTATTAGTTTTTTGTTTTGATGGACCTTATAGTGTGTCCTGTAGAATTTATTTACTAGATCTCTCTATGACAATAATGGCAAAGTTTCATTAGATGCTAGCCATAGCGTAATTTAAGAAGAAGAAGAAATAATGATATGAACTTTGAGTTTCACATCTATTGTACTAGAAATATCAAGTTCAGGAAATGAATAAAATCTGTAGATTTTGTGCATTCTTAATGTTAAATATTAGATACTTCATTGTTATTCCAATGCAATGAAAGTTGTTGGTAGCATATTACCTATAGACAACTTAATTAAGCGTTTATGGCTTAAGCGCTTATGATATAAGTACTTATGTATAAGCCATTTATATAACAAATAGATAAAACAAAGTCAAAACTGTTTTCAAAAGCTATCCTGGAGAGCTTATGGAAATTAGCTGAAAACATCTTTAGGACATGTCATAAGCCGTTTCCATAAGCTATTCCAAACAGAATTTAATATTAGTAACTTGTGATCTTGTTTGAAATATGTGTTGCAGTATTTTCTTAAGACAGGAACATGTAAGTATGGATCGACATGTAAATATCATCATCCCAAAGACAGGAGAGGTGCTGCACCCGTTGTCTTCAATACTTTAGGTCTTCCCATGCGTCAGGTTTGTACATCCCTTTGAACCAAGTGCTTTATTTTTTCCACAAAGTTTACTCTTCTAATGGAAGATGTTGAAGCAGTTGCGTTTTTCAATAATCTACAATTGTTGCTTTTAGGAAGAAAAATCATGTCCCTATTACATGAGAACTGGGTCTTGCAAGTTTGGAGTTGCATGCAAGTTTCATCATCCACAACAGGCAGCTTCCTTTGGAGGAGCTTATCCAGTGGCGGCGTCCCCTCCCTCCACAACTGTTACTTCATCAGGTTTTCCATATGCTGGTGGGTTTCCTGCATGGTCAATGCCGAGAATGTCATATTTATCTGGACAGGCCATTCAATCTTATGTGCCTCCTTTTTTGCCTTCTTCACAAGGCATTATGCCTGCGCTGAGCTGGAGCAACTACATGGTTAGTTAAAAACTGTTGAATGTCGTGTTTATATTTACAGTTACTGTGTTATTGAATGATCACACACATATACTGATTAACCTGGTATGGTTTAAAAACTGTCAAATATATTAGCTAAACGAATACACGAAGGTTAGAAATTAGAAAATCTTGTTACCATTTTTACTACTAGATGTCGCACACATTGCATGATTGACAATACTTTTGTTTCATTGATTTCCAATCACATTTGGCGCTCAAATACCGATTAACATCGAAAACAGAACCAGTCTTGTCTTGTTTAGGAAATATTCCTAGCCTTTTAGGATGTTTGGCTATGTTTGATTATGTTAGATTTCGTAACTACATGCATTCAGTGGTTACTGGTTACTTACTTTTTGCTGATTCAACTAAGATGTTCTGTTTTTGACTGCTATTTTATTTGTCGAAAAAGGGAAGTATTAACCCTGCAATGCCTACTGGTTTTATTGGATCTAATCTTGTCTACGACTACATGAATCCGGCGGGAGAGACACTTTCTGGTGGACAGGTAATGAATTCATCTCTTCCAGATAGACCTGAGCAACCAGACTGTAAATACTTTATGAGCACCGGAACATGCAAATATGGATCTGATTGCAAGTTCCACCACCCTAAAGAAAGGATAGCACAAACATTATCAATTAATCCACTTGGTCTTCCTATGAGACCTGTAAGTGCATTTTCTTCTTAATGCTTAGGGTCCGTTTGTTCCAACTTTTTATTGTGAAAAAAAATCATTTTTTTAAATAAACAATTTTAGAAGTTTTCATGCATTTGTTATTTAAACAAAATGAGAATCTGAAAAAAATCTCCAAAAAATAATCTATAAACTATTGAATATCATTTTTTGTTACTTTGAAATATTTGTAAATATTATCCTCCCTAATATTTTAAGATACTTTTATAATAAGTTATCAAATTAATTTGATTTTCTGATTCCTATGTTGGTTGTCTGCAGGGAAATGCTATATGCTCTTATTACAGAATCTATGGAGTATGCAAGTTTGGTCCAACATGCAAATTTGATCATCCAGTTGTGGCTATCTCTCAGAACTACGGCTTGCCCTCGCCTACTCTATCAGTATTCGATGCATCTCTCCTTACTAATCCAAGAAGGCTTTCAACTGTCCAACCAACCGAGACATCTCCATCGAAACAATCAACTGACAAGCTTCAACAATCTGATACAAAAGCTGCTACCGAAGATTCATCTAAACAAGCTGACAGTACATCAACTTCTCGCACACCTTCGACCGAGTCTTTACAGGAATAA
Protein sequence

>MS.gene016715.t1

MPENRQVFKNAGSNPSGDNIEEAIRRLKINSTRDRDAVPQSMPYPDRPGEPDCVYYLRTGMCGYGSNCRYNHPANISPVTQYGEELPERVGQPDCEYFLKTGTCKYGSTCKYHHPKDRRGAAPVVFNTLGLPMRQEEKSCPYYMRTGSCKFGVACKFHHPQQAASFGGAYPVAASPPSTTVTSSGFPYAGGFPAWSMPRMSYLSGQAIQSYVPPFLPSSQGIMPALSWSNYMGSINPAMPTGFIGSNLVYDYMNPAGETLSGGQVMNSSLPDRPEQPDCKYFMSTGTCKYGSDCKFHHPKERIAQTLSINPLGLPMRPGNAICSYYRIYGVCKFGPTCKFDHPVVAISQNYGLPSPTLSVFDASLLTNPRRLSTVQPTETSPSKQSTDKLQQSDTKAATEDSSKQADSTSTSRTPSTESLQE