AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene016996

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene016996.t1 MTR_5g071860 91.777 754 28 1 1 720 1 754 0.0 1424
MS.gene016996.t1 MTR_5g071630 88.147 734 39 4 21 720 6 725 0.0 1308
MS.gene016996.t1 MTR_5g071827 90.991 666 26 1 89 720 1 666 0.0 1251
MS.gene016996.t1 MTR_6g033165 51.643 761 302 4 26 720 59 819 0.0 799
MS.gene016996.t1 MTR_5g034500 50.192 781 320 6 8 720 3 782 0.0 786
MS.gene016996.t1 MTR_6g007697 51.355 775 314 7 8 720 3 776 0.0 783
MS.gene016996.t1 MTR_3g094090 49.488 782 311 12 18 718 14 792 0.0 760
MS.gene016996.t1 MTR_8g099090 43.875 800 361 9 1 720 1 792 0.0 679
MS.gene016996.t1 MTR_2g438150 44.607 751 365 6 18 720 42 789 0.0 659
MS.gene016996.t1 MTR_2g438150 44.638 746 362 6 18 715 42 784 0.0 655
MS.gene016996.t1 MTR_4g094660 44.474 751 364 6 18 720 42 787 0.0 638
MS.gene016996.t1 MTR_8g063840 43.045 762 376 7 15 720 81 840 0.0 610
MS.gene016996.t1 MTR_7g108480 39.234 757 397 9 2 720 42 773 0.0 575
MS.gene016996.t1 MTR_2g008820 38.701 770 406 7 11 720 86 849 0.0 573
MS.gene016996.t1 MTR_8g107510 41.330 767 367 14 26 717 21 779 0.0 565
MS.gene016996.t1 MTR_2g438160 48.673 565 253 2 34 564 58 619 0.0 562
MS.gene016996.t1 MTR_4g099260 38.838 757 395 8 26 720 65 815 0.0 551
MS.gene016996.t1 MTR_3g094090 46.091 614 239 11 190 718 1 607 0.0 548
MS.gene016996.t1 MTR_8g063900 38.102 748 370 9 13 720 51 745 0.0 539
MS.gene016996.t1 MTR_8g022130 38.639 735 382 10 26 720 61 766 9.00e-177 524
MS.gene016996.t1 MTR_5g070670 37.468 774 410 8 11 720 86 849 5.90e-175 522
MS.gene016996.t1 MTR_8g088200 36.611 773 399 10 19 720 30 782 8.38e-171 509
MS.gene016996.t1 MTR_4g094660 43.118 603 293 5 166 720 1 601 6.10e-166 491
MS.gene016996.t1 MTR_5g034590 35.366 246 138 3 426 671 125 349 8.31e-47 170
MS.gene016996.t1 MTR_5g034590 45.349 86 42 1 88 168 5 90 1.06e-13 73.9
MS.gene016996.t1 MTR_8g022160 52.663 169 72 4 25 192 60 221 2.40e-46 166
MS.gene016996.t1 MTR_1g029310 33.333 126 77 2 176 301 12 130 2.93e-17 79.3
MS.gene016996.t1 MTR_6g045057 32.051 156 99 3 181 333 8 159 2.56e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene016996.t1 AT2G30070 65.119 754 187 3 1 720 1 712 0.0 1016
MS.gene016996.t1 AT2G30070 61.769 633 166 4 122 720 2 592 0.0 806
MS.gene016996.t1 AT1G70300 51.847 785 301 10 8 720 3 782 0.0 786
MS.gene016996.t1 AT5G14880 51.285 778 312 9 10 720 4 781 0.0 766
MS.gene016996.t1 AT3G02050 49.937 789 326 6 1 720 1 789 0.0 765
MS.gene016996.t1 AT2G40540 48.715 778 322 6 18 718 15 792 0.0 756
MS.gene016996.t1 AT2G40540 48.715 778 322 6 18 718 15 792 0.0 756
MS.gene016996.t1 AT2G40540 48.715 778 322 6 18 718 15 792 0.0 756
MS.gene016996.t1 AT2G40540 48.715 778 322 6 18 718 15 792 0.0 756
MS.gene016996.t1 AT2G40540 48.715 778 322 6 18 718 15 792 0.0 756
MS.gene016996.t1 AT4G23640 45.537 773 350 6 18 720 4 775 0.0 696
MS.gene016996.t1 AT4G19960 44.622 753 348 6 30 720 62 807 0.0 634
MS.gene016996.t1 AT4G19960 43.823 769 347 7 30 720 62 823 0.0 625
MS.gene016996.t1 AT1G31120 43.546 767 350 7 18 720 49 796 0.0 625
MS.gene016996.t1 AT1G60160 42.857 756 384 10 11 720 74 827 0.0 624
MS.gene016996.t1 AT4G19960 43.132 779 348 7 30 720 62 833 0.0 620
MS.gene016996.t1 AT2G35060 43.288 730 368 6 34 720 66 792 0.0 618
MS.gene016996.t1 AT2G35060 43.288 730 368 6 34 720 66 792 0.0 618
MS.gene016996.t1 AT2G35060 43.288 730 368 6 34 720 66 792 0.0 618
MS.gene016996.t1 AT2G35060 43.228 731 368 7 34 720 66 793 0.0 613
MS.gene016996.t1 AT4G13420 39.660 764 406 10 2 720 32 785 0.0 592
MS.gene016996.t1 AT4G33530 39.244 767 407 9 11 720 91 855 0.0 541
MS.gene016996.t1 AT5G09400 38.292 773 410 8 11 720 90 858 1.91e-180 537
MS.gene016996.t1 AT4G19960 43.441 587 266 5 196 720 4 586 6.89e-164 485
MS.gene016996.t1 AT4G33530 38.274 614 323 7 163 720 14 627 8.23e-144 435

Find 133 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTTCATCATCTTCTTTA+AGG 0.071012 5.2:+76347842 None:intergenic
TATTCCAAATTTCTTTAAAA+TGG 0.164431 5.2:+76343907 None:intergenic
GTCAATTCATTTGTTTGTTC+TGG 0.193129 5.2:+76344157 None:intergenic
ATTAATATCCAATTGATTTC+TGG 0.209276 5.2:+76345248 None:intergenic
AAAATGAAAGAGAGCGAAAT+TGG 0.220148 5.2:+76344601 None:intergenic
GAGTGCTTTCATTTATCTTC+TGG 0.238376 5.2:-76347813 MS.gene016996:CDS
TCATCTGTTGGTTGCTGATT+AGG 0.240442 5.2:+76347351 None:intergenic
ATAAGTAACACCTGATTCTT+TGG 0.245477 5.2:+76343970 None:intergenic
CTGCAATGACTCGACTTTAT+AGG 0.258661 5.2:+76344003 None:intergenic
AGTATATCCGTGCCTGATTT+TGG 0.260994 5.2:-76345600 MS.gene016996:CDS
CAAAGATTAACAGTCCTTTC+TGG 0.261123 5.2:+76347241 None:intergenic
TTTCTGCAGAAGCTGTATTT+TGG 0.274753 5.2:-76345427 MS.gene016996:intron
CAACTTCTAACAAAGAAGTA+TGG 0.276780 5.2:+76343822 None:intergenic
TTTCACCAGTCTATATGTTT+AGG 0.299827 5.2:-76345973 MS.gene016996:CDS
GGAGTTGTGCTTTCAATAAC+AGG 0.310143 5.2:-76345908 MS.gene016996:intron
AAAAGCCATGCTGCAACAAC+TGG 0.315117 5.2:+76346058 None:intergenic
TGTTGGCCATCACATGAAAA+TGG 0.333547 5.2:+76344040 None:intergenic
ATTGGGATCCATCCTCCTTC+AGG 0.341677 5.2:+76344619 None:intergenic
CGAAGGAGTTCTACATGTTT+CGG 0.343061 5.2:-76344285 MS.gene016996:CDS
TAGCTGTCACAATTGGCCTT+AGG 0.357454 5.2:-76345214 MS.gene016996:CDS
CTTTGTTTAGCTGTCACAAT+TGG 0.363159 5.2:-76345221 MS.gene016996:CDS
GTGATTACTCCTGCAATATC+AGG 0.363527 5.2:-76347183 MS.gene016996:intron
AACACACCTTGAAATTGAAT+TGG 0.363854 5.2:-76344087 MS.gene016996:CDS
CATACTTCTAGCAAAATATA+TGG 0.365015 5.2:-76345284 MS.gene016996:CDS
CTCAAAACCACTGGCATTGA+AGG 0.371128 5.2:-76345947 MS.gene016996:CDS
CTGTTAATCTTTGTTCTGTT+GGG 0.380410 5.2:-76347231 MS.gene016996:CDS
CTTTCACTTTCATTGACATA+AGG 0.382299 5.2:+76344331 None:intergenic
TCAGGTGTTACTTATATAGT+TGG 0.390413 5.2:-76343962 MS.gene016996:CDS
TTTATGTTCCAGAAATCAAT+TGG 0.391774 5.2:-76345256 MS.gene016996:CDS
GTAATGTTCACATGGAACTA+TGG 0.394069 5.2:-76344571 MS.gene016996:CDS
ACTGTTAATCTTTGTTCTGT+TGG 0.397677 5.2:-76347232 MS.gene016996:CDS
TTTCACTTTCATTGACATAA+GGG 0.402173 5.2:+76344332 None:intergenic
ATCAAAATACCTGATATTGC+AGG 0.415433 5.2:+76347174 None:intergenic
CATACTTCTTTGTTAGAAGT+TGG 0.415616 5.2:-76343821 MS.gene016996:CDS
AGCTGTCACAATTGGCCTTA+GGG 0.426551 5.2:-76345213 MS.gene016996:CDS
ATGTGACCAATTCAATTTCA+AGG 0.426738 5.2:+76344081 None:intergenic
ACCGAAAATAGCCGGGATAC+CGG 0.432386 5.2:+76344423 None:intergenic
CACCCATGTATGCCAAAATC+AGG 0.434049 5.2:+76345588 None:intergenic
TGCACAGCATTGGCTTATGA+TGG 0.434606 5.2:+76345337 None:intergenic
AAGTGAATTCTTGCCTGGTA+TGG 0.436212 5.2:+76345511 None:intergenic
GTATACAAGACCTCATTCTC+AGG 0.441568 5.2:-76347874 MS.gene016996:CDS
CTGAAAATGAGACCGATTCC+TGG 0.448779 5.2:+76344457 None:intergenic
ATGGTCCGTGTCCCAGGAAT+CGG 0.452741 5.2:-76344469 MS.gene016996:CDS
GCTACTTCCAGCATAATATC+AGG 0.456200 5.2:+76343845 None:intergenic
TTAGGCATGGTCCGTGTCCC+AGG 0.459289 5.2:-76344475 MS.gene016996:CDS
AAATGAAAGAGAGCGAAATT+GGG 0.461264 5.2:+76344602 None:intergenic
CAAAGTCTAGGAGTAGTCTA+TGG 0.463386 5.2:-76347922 MS.gene016996:CDS
AACATGATGGGTCATGCATA+TGG 0.464031 5.2:-76345185 MS.gene016996:intron
GTCATGTCTGCTGATGATAA+TGG 0.466473 5.2:-76347751 MS.gene016996:CDS
GTTTGGTTAGCTTACTGTCA+TGG 0.466721 5.2:+76346235 None:intergenic
TTCTTTGTTAGAAGTTGGTA+TGG 0.468432 5.2:-76343816 MS.gene016996:CDS
AGGACTCGTCTTGAAGTTGT+TGG 0.469508 5.2:+76344023 None:intergenic
CAGGTGTTACTTATATAGTT+GGG 0.474382 5.2:-76343961 MS.gene016996:CDS
AACAATTTAATGCACAGCAT+TGG 0.475035 5.2:+76345327 None:intergenic
TGTTCTACAAATTGCTCAGA+AGG 0.477261 5.2:+76348093 None:intergenic
GAAGGATGGTTGTCGTTAAG+TGG 0.477896 5.2:-76345929 MS.gene016996:CDS
AACAGTCCTTTCTGGAACCT+AGG 0.480876 5.2:+76347249 None:intergenic
AGATTAGTCATCCGCAGGAT+TGG 0.484928 5.2:-76344310 MS.gene016996:CDS
AAATTTACCAGCATTCCATC+AGG 0.485062 5.2:-76344389 MS.gene016996:CDS
ACTAACACCTGATGGAATGC+TGG 0.486728 5.2:+76344382 None:intergenic
GATATACTTGTCGGTTCCAT+CGG 0.487236 5.2:+76346002 None:intergenic
GCAGATAAATTCTCATCTGT+TGG 0.490212 5.2:+76347339 None:intergenic
TTGGGATCCATCCTCCTTCA+GGG 0.490733 5.2:+76344620 None:intergenic
TTGGGAACTTGCATGACAAT+TGG 0.496346 5.2:-76347213 MS.gene016996:CDS
CATGATGCTGAATGGAGAAA+AGG 0.497785 5.2:+76346110 None:intergenic
TCCTACAACAGCAGCAAAAG+TGG 0.499235 5.2:+76345388 None:intergenic
ATAAAATGACCGAAAATAGC+CGG 0.499251 5.2:+76344415 None:intergenic
GTGAGCAAGATGTTATCCTT+AGG 0.504871 5.2:-76344505 MS.gene016996:CDS
CAGAAGATTCTGCTGATACA+TGG 0.509581 5.2:-76347308 MS.gene016996:CDS
AATGAATTGACTATAGATGA+TGG 0.510618 5.2:-76344145 MS.gene016996:CDS
TTTAGGTTTCTCAAAACCAC+TGG 0.512735 5.2:-76345956 MS.gene016996:CDS
TTAGCTTACTGTCATGGAGT+TGG 0.515817 5.2:+76346241 None:intergenic
TAATCTTGCTTCCGGTATCC+CGG 0.517669 5.2:-76344434 MS.gene016996:CDS
GAGGTCTTGTATACATAAAG+AGG 0.520785 5.2:+76347883 None:intergenic
CATCCGCAGGATTGGTTCGA+AGG 0.521379 5.2:-76344302 MS.gene016996:CDS
CATAGACTACTCCTAGACTT+TGG 0.526223 5.2:+76347923 None:intergenic
CCTTAGGGATACAAACATGA+TGG 0.530819 5.2:-76345198 MS.gene016996:CDS
TGTTCTTTGAAAAGCACCCT+AGG 0.532742 5.2:-76347266 MS.gene016996:CDS
ATGTGTTCCATGATGCTGAA+TGG 0.533306 5.2:+76346102 None:intergenic
CAGAGAACCTGATATTATGC+TGG 0.533599 5.2:-76343852 MS.gene016996:CDS
TGAAAATGAGACCGATTCCT+GGG 0.537425 5.2:+76344458 None:intergenic
ATAGTTCCATGTGAACATTA+CGG 0.537461 5.2:+76344573 None:intergenic
AACATAAATGTGGAAAATCT+CGG 0.537686 5.2:-76344118 MS.gene016996:CDS
CATGCCTAAGCATGGTCCTA+AGG 0.539255 5.2:+76344489 None:intergenic
GCTCAATTTCCCTGAGAATG+AGG 0.540286 5.2:+76347864 None:intergenic
TGATGTGGAAAACAAGGTCT+CGG 0.545639 5.2:-76344527 MS.gene016996:CDS
GCAAAGTCCCTGAAGGAGGA+TGG 0.548872 5.2:-76344627 MS.gene016996:CDS
CCATCATGTTTGTATCCCTA+AGG 0.550781 5.2:+76345198 None:intergenic
ACAGTCCTTTCTGGAACCTA+GGG 0.551879 5.2:+76347250 None:intergenic
AACTTCTAACAAAGAAGTAT+GGG 0.551993 5.2:+76343823 None:intergenic
TTATCCTTAGGACCATGCTT+AGG 0.552419 5.2:-76344493 MS.gene016996:CDS
CCAATTTGATGTGGAAAACA+AGG 0.553303 5.2:-76344533 MS.gene016996:CDS
TTTCGGTGCATTGTCCGATA+CGG 0.553523 5.2:-76344268 MS.gene016996:CDS
AGTTTCTACAAAGCCATACC+AGG 0.558577 5.2:-76345524 MS.gene016996:intron
TAAAATGACCGAAAATAGCC+GGG 0.558708 5.2:+76344416 None:intergenic
GCATGTCTTTGTAACCGTAT+CGG 0.567297 5.2:+76344254 None:intergenic
AGAAACCTAAACATATAGAC+TGG 0.570041 5.2:+76345968 None:intergenic
GTGAAAGATTAGTCATCCGC+AGG 0.571087 5.2:-76344315 MS.gene016996:CDS
ACTCTAGCATACCAAAGTCT+AGG 0.571887 5.2:-76347934 MS.gene016996:CDS
TTCTGGCCGTAATGTTCACA+TGG 0.574764 5.2:-76344579 MS.gene016996:CDS
TCTGAGCAATTTGTAGAACA+AGG 0.575722 5.2:-76348090 MS.gene016996:CDS
AAAGCCATGCTGCAACAACT+GGG 0.580024 5.2:+76346059 None:intergenic
AAAGTGCACGATATACTTGT+CGG 0.583744 5.2:+76345993 None:intergenic
CGGATATACTAAACATGTGA+AGG 0.584321 5.2:+76345613 None:intergenic
AACAACTGGGGCAAACATGA+AGG 0.584606 5.2:+76346072 None:intergenic
GAAGAAACACCAATTTGATG+TGG 0.584893 5.2:-76344542 MS.gene016996:CDS
GGAGACAATGTATGCTGACA+TGG 0.585033 5.2:-76345766 MS.gene016996:CDS
AAACCACTGGCATTGAAGGA+TGG 0.591920 5.2:-76345943 MS.gene016996:CDS
TTGCCCCAGTTGTTGCAGCA+TGG 0.595472 5.2:-76346063 MS.gene016996:CDS
TGATGGAAGAAACATAAATG+TGG 0.597494 5.2:-76344128 MS.gene016996:CDS
TATACAAGACCTCATTCTCA+GGG 0.606947 5.2:-76347873 MS.gene016996:CDS
GTCTGCAAAGTCCCTGAAGG+AGG 0.607712 5.2:-76344631 MS.gene016996:CDS
ATATGTATCAGAATTTGAAG+AGG 0.608727 5.2:-76347978 MS.gene016996:intron
CTTAGGGATACAAACATGAT+GGG 0.610422 5.2:-76345197 MS.gene016996:CDS
TCTGTCTGCAAAGTCCCTGA+AGG 0.615084 5.2:-76344634 MS.gene016996:CDS
CAACCATCCTTCAATGCCAG+TGG 0.619390 5.2:+76345940 None:intergenic
GTATATACAATATATTCCGA+TGG 0.631291 5.2:-76346018 MS.gene016996:CDS
AAGCACCCTAGGTTCCAGAA+AGG 0.633339 5.2:-76347255 MS.gene016996:CDS
CTTAGGACCATGCTTAGGCA+TGG 0.633844 5.2:-76344488 MS.gene016996:CDS
GTATGAACAATCTTGACTCG+AGG 0.638636 5.2:+76345302 None:intergenic
ACACGGACCATGCCTAAGCA+TGG 0.638975 5.2:+76344481 None:intergenic
TGAGACCGATTCCTGGGACA+CGG 0.648319 5.2:+76344464 None:intergenic
ATGTATGCCAAAATCAGGCA+CGG 0.648736 5.2:+76345593 None:intergenic
TATAAGGTTAGAGTTATACA+TGG 0.660478 5.2:+76343789 None:intergenic
AGTTGGGCATTCCTATGCAG+AGG 0.666901 5.2:-76343945 MS.gene016996:CDS
ACTTGCATGACAATTGGTGA+TGG 0.676889 5.2:-76347207 MS.gene016996:CDS
AGAACAAGGAATATCTCACC+AGG 0.679281 5.2:-76348076 MS.gene016996:intron
TCTGCTGATGATAATGGAGA+AGG 0.680990 5.2:-76347745 MS.gene016996:intron
CAATTGTGACAGCTAAACAA+AGG 0.683793 5.2:+76345222 None:intergenic
AAGCCATGCTGCAACAACTG+GGG 0.696949 5.2:+76346060 None:intergenic
TGTTGTCACAAACATAACAG+TGG 0.717093 5.2:+76344762 None:intergenic
ACTCCTTCGAACCAATCCTG+CGG 0.717866 5.2:+76344299 None:intergenic
GAGACAATGTATGCTGACAT+GGG 0.720378 5.2:-76345765 MS.gene016996:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAAAAGGTATTTAATAT+AGG + chr5.2:76344933-76344952 None:intergenic 10.0%
!!! AAAAAAAGGTATTTAATATA+GGG + chr5.2:76344932-76344951 None:intergenic 10.0%
!! ATATTATTTATGATAACTCT+AGG - chr5.2:76346434-76346453 MS.gene016996:intron 15.0%
!! TACAATAATTATCCTAATTA+AGG + chr5.2:76344468-76344487 None:intergenic 15.0%
!! TATTATTAATTTCTTATGCT+TGG - chr5.2:76343896-76343915 MS.gene016996:CDS 15.0%
!! TATTATTTATGATAACTCTA+GGG - chr5.2:76346435-76346454 MS.gene016996:intron 15.0%
!!! AAATCAAATGTTTTCATTTT+TGG + chr5.2:76345321-76345340 None:intergenic 15.0%
!!! TAAATTTAAACTACTTTTCT+TGG - chr5.2:76347097-76347116 MS.gene016996:intron 15.0%
!!! TATTCCAAATTTCTTTAAAA+TGG + chr5.2:76347997-76348016 None:intergenic 15.0%
!! AAATAATATCGATATCTTTG+TGG + chr5.2:76346423-76346442 None:intergenic 20.0%
!! AATACATGATTCTGTAATTA+AGG + chr5.2:76344966-76344985 None:intergenic 20.0%
!! ACACAATTTCATATTTGAAA+TGG + chr5.2:76343864-76343883 None:intergenic 20.0%
!! AGGATGAAAAAGAAAAAAAA+AGG + chr5.2:76344946-76344965 None:intergenic 20.0%
!! ATTATAATTGTTTGGAAACA+AGG - chr5.2:76347180-76347199 MS.gene016996:intron 20.0%
!! ATTGTTTAATCTAAACACAA+TGG + chr5.2:76346756-76346775 None:intergenic 20.0%
!! CACATTTCAGAAAAAATAAT+TGG - chr5.2:76345495-76345514 MS.gene016996:intron 20.0%
!! CACTAGTAATTATAATTGTT+TGG - chr5.2:76347172-76347191 MS.gene016996:intron 20.0%
!! TCAATTATAACTACTCATTA+AGG - chr5.2:76344259-76344278 MS.gene016996:CDS 20.0%
!! TTATAATTGTTTGGAAACAA+GGG - chr5.2:76347181-76347200 MS.gene016996:intron 20.0%
!!! ATGGATAACATAATTCTTTT+TGG + chr5.2:76345370-76345389 None:intergenic 20.0%
!!! ATTAATATCCAATTGATTTC+TGG + chr5.2:76346656-76346675 None:intergenic 20.0%
!!! GTCTTTTGTTTGTAATTTTA+TGG + chr5.2:76346954-76346973 None:intergenic 20.0%
!!! TATGCTTTTAATAGACATAA+TGG + chr5.2:76345703-76345722 None:intergenic 20.0%
!!! TCTTCCATTTTAAAGAAATT+TGG - chr5.2:76347990-76348009 MS.gene016996:intron 20.0%
! AATGAATTGACTATAGATGA+TGG - chr5.2:76347756-76347775 MS.gene016996:CDS 25.0%
! AGATACATTTGATGAAGAAA+CGG + chr5.2:76346880-76346899 None:intergenic 25.0%
! ATATGTATCAGAATTTGAAG+AGG - chr5.2:76343923-76343942 MS.gene016996:CDS 25.0%
! CATACTTCTAGCAAAATATA+TGG - chr5.2:76346617-76346636 MS.gene016996:intron 25.0%
! CTTTCTTATGTTCCTTAATT+AGG - chr5.2:76344453-76344472 MS.gene016996:CDS 25.0%
! GTATATACAATATATTCCGA+TGG - chr5.2:76345883-76345902 MS.gene016996:intron 25.0%
! TACAAACAAAAGACACTTTA+GGG - chr5.2:76346960-76346979 MS.gene016996:intron 25.0%
! TCAGCTAAAGTTACAATTTA+AGG + chr5.2:76345425-76345444 None:intergenic 25.0%
! TCATTATGATACTTGAAGTA+TGG - chr5.2:76347069-76347088 MS.gene016996:intron 25.0%
! TTAATAAGCTTAAAAGCCAA+AGG + chr5.2:76344233-76344252 None:intergenic 25.0%
! TTACAAACAAAAGACACTTT+AGG - chr5.2:76346959-76346978 MS.gene016996:intron 25.0%
! TTTATGTTCCAGAAATCAAT+TGG - chr5.2:76346645-76346664 MS.gene016996:intron 25.0%
! TTTCACTTTCATTGACATAA+GGG + chr5.2:76347572-76347591 None:intergenic 25.0%
! TTTCTTCATCATCTTCTTTA+AGG + chr5.2:76344062-76344081 None:intergenic 25.0%
!! AACTTCTAACAAAGAAGTAT+GGG + chr5.2:76348081-76348100 None:intergenic 25.0%
!! AATATCCTTTATGTGAGTTT+TGG + chr5.2:76344319-76344338 None:intergenic 25.0%
!! CTCTTGAAACAGTATATTTT+CGG + chr5.2:76345529-76345548 None:intergenic 25.0%
!! CTGTCATCATTTTATTCATT+TGG + chr5.2:76344359-76344378 None:intergenic 25.0%
!! GAAGATGATGAAGAAATTTT+TGG - chr5.2:76344066-76344085 MS.gene016996:CDS 25.0%
!! TAATGGTAATGATAGAAGTT+TGG + chr5.2:76345686-76345705 None:intergenic 25.0%
!! TCTGTTTAAAATAACTGATG+TGG - chr5.2:76345011-76345030 MS.gene016996:intron 25.0%
!! TTTTTATCCTAAAATGTGTG+AGG - chr5.2:76346778-76346797 MS.gene016996:intron 25.0%
!!! ATGAAAACATTTGATTTTGC+AGG - chr5.2:76345324-76345343 MS.gene016996:CDS 25.0%
!!! ATTTGTTGTACAACCAAATT+TGG + chr5.2:76346054-76346073 None:intergenic 25.0%
!!! ATTTTAAAAGCCAAAGAATC+AGG - chr5.2:76347921-76347940 MS.gene016996:CDS 25.0%
!!! TACTTGTTGTACAAGTAAAA+GGG - chr5.2:76344832-76344851 MS.gene016996:intron 25.0%
!!! TGAAAACATTTGATTTTGCA+GGG - chr5.2:76345325-76345344 MS.gene016996:CDS 25.0%
!!! TGACATTTTGACTAACTAAT+AGG + chr5.2:76346021-76346040 None:intergenic 25.0%
!!! TTACTTGTTGTACAAGTAAA+AGG - chr5.2:76344831-76344850 MS.gene016996:intron 25.0%
AAAATGAAAGAGAGCGAAAT+TGG + chr5.2:76347303-76347322 None:intergenic 30.0%
AAAGCTTATGTTGTAAACAG+AGG + chr5.2:76345272-76345291 None:intergenic 30.0%
AAATGAAAGAGAGCGAAATT+GGG + chr5.2:76347302-76347321 None:intergenic 30.0%
AACAATTTAATGCACAGCAT+TGG + chr5.2:76346577-76346596 None:intergenic 30.0%
AACACACCTTGAAATTGAAT+TGG - chr5.2:76347814-76347833 MS.gene016996:CDS 30.0%
AATGGAAAAAAATGAGTACC+TGG + chr5.2:76343846-76343865 None:intergenic 30.0%
ACATCATAATATGATCTGAG+AGG + chr5.2:76344764-76344783 None:intergenic 30.0%
ACTGTTAATCTTTGTTCTGT+TGG - chr5.2:76344669-76344688 MS.gene016996:intron 30.0%
AGAAACCTAAACATATAGAC+TGG + chr5.2:76345936-76345955 None:intergenic 30.0%
ATAAAATGACCGAAAATAGC+CGG + chr5.2:76347489-76347508 None:intergenic 30.0%
ATAAGTAACACCTGATTCTT+TGG + chr5.2:76347934-76347953 None:intergenic 30.0%
ATACAAAAACTAACACCTGA+TGG + chr5.2:76347530-76347549 None:intergenic 30.0%
ATAGTTCCATGTGAACATTA+CGG + chr5.2:76347331-76347350 None:intergenic 30.0%
ATCAAAATACCTGATATTGC+AGG + chr5.2:76344730-76344749 None:intergenic 30.0%
ATCATAATATGATCTGAGAG+GGG + chr5.2:76344762-76344781 None:intergenic 30.0%
ATGTGACCAATTCAATTTCA+AGG + chr5.2:76347823-76347842 None:intergenic 30.0%
CAAATCAAGAGAAATCTCTT+TGG - chr5.2:76344410-76344429 MS.gene016996:CDS 30.0%
CAACTTCTAACAAAGAAGTA+TGG + chr5.2:76348082-76348101 None:intergenic 30.0%
CAATCTTCAATCATTGATGA+TGG - chr5.2:76344181-76344200 MS.gene016996:CDS 30.0%
CATACTTCTTTGTTAGAAGT+TGG - chr5.2:76348080-76348099 MS.gene016996:CDS 30.0%
CATCATAATATGATCTGAGA+GGG + chr5.2:76344763-76344782 None:intergenic 30.0%
CTGTTAATCTTTGTTCTGTT+GGG - chr5.2:76344670-76344689 MS.gene016996:intron 30.0%
CTTACATGTTTCCTATTGTT+TGG - chr5.2:76347216-76347235 MS.gene016996:CDS 30.0%
CTTTCACTTTCATTGACATA+AGG + chr5.2:76347573-76347592 None:intergenic 30.0%
GTCAATTCATTTGTTTGTTC+TGG + chr5.2:76347747-76347766 None:intergenic 30.0%
GTTCAATAGATCCAAACAAT+AGG + chr5.2:76347230-76347249 None:intergenic 30.0%
TAGGATAATTATTGTACTGC+AGG - chr5.2:76344472-76344491 MS.gene016996:CDS 30.0%
TGATGGAAGAAACATAAATG+TGG - chr5.2:76347773-76347792 MS.gene016996:CDS 30.0%
TTTCACCAGTCTATATGTTT+AGG - chr5.2:76345928-76345947 MS.gene016996:CDS 30.0%
! ATTTTCAGTAATCTTGCTTC+CGG - chr5.2:76347459-76347478 MS.gene016996:intron 30.0%
! TGGTCTTCTAAAAAACAGAA+TGG - chr5.2:76344859-76344878 MS.gene016996:intron 30.0%
! TGTTTACCATTTTCATGTGA+TGG - chr5.2:76347855-76347874 MS.gene016996:CDS 30.0%
!! ATTTTGGCCAGTTTTTATAG+TGG - chr5.2:76346490-76346509 MS.gene016996:intron 30.0%
!! CAGGTGTTACTTATATAGTT+GGG - chr5.2:76347940-76347959 MS.gene016996:CDS 30.0%
!! GTCTCATGTATCATTTTAGT+TGG - chr5.2:76345768-76345787 MS.gene016996:CDS 30.0%
!! TCAGGTGTTACTTATATAGT+TGG - chr5.2:76347939-76347958 MS.gene016996:CDS 30.0%
!! TTCTTTGTTAGAAGTTGGTA+TGG - chr5.2:76348085-76348104 MS.gene016996:CDS 30.0%
!! TTTTTCAGCACTCTCAATAA+AGG - chr5.2:76346162-76346181 MS.gene016996:intron 30.0%
!!! ATCATTGATGATGGTACTTT+TGG - chr5.2:76344190-76344209 MS.gene016996:CDS 30.0%
!!! CAATATCAGGTATTTTGATC+AGG - chr5.2:76344731-76344750 MS.gene016996:intron 30.0%
AAAGTGCACGATATACTTGT+CGG + chr5.2:76345911-76345930 None:intergenic 35.0%
AAAGTGGCCACTATAAAAAC+TGG + chr5.2:76346500-76346519 None:intergenic 35.0%
AAATTTACCAGCATTCCATC+AGG - chr5.2:76347512-76347531 MS.gene016996:intron 35.0%
ACCGAAATTCGCTCTATTTA+TGG + chr5.2:76344903-76344922 None:intergenic 35.0%
ATCTGTGACATTGCTAATGA+TGG + chr5.2:76345389-76345408 None:intergenic 35.0%
CAAAGATTAACAGTCCTTTC+TGG + chr5.2:76344663-76344682 None:intergenic 35.0%
CAATTGTGACAGCTAAACAA+AGG + chr5.2:76346682-76346701 None:intergenic 35.0%
CAGGTACAGAACTTTGTATA+AGG + chr5.2:76345557-76345576 None:intergenic 35.0%
CATATTTATCCTCCATGGAA+CGG + chr5.2:76345057-76345076 None:intergenic 35.0%
CCAATTTGATGTGGAAAACA+AGG - chr5.2:76347368-76347387 MS.gene016996:CDS 35.0%
CCCATAAATAGAGCGAATTT+CGG - chr5.2:76344899-76344918 MS.gene016996:intron 35.0%
CCGAAATTCGCTCTATTTAT+GGG + chr5.2:76344902-76344921 None:intergenic 35.0%
CGAAATTCGCTCTATTTATG+GGG + chr5.2:76344901-76344920 None:intergenic 35.0%
CGGATATACTAAACATGTGA+AGG + chr5.2:76346291-76346310 None:intergenic 35.0%
CTTAGGGATACAAACATGAT+GGG - chr5.2:76346704-76346723 MS.gene016996:intron 35.0%
GAAGAAACACCAATTTGATG+TGG - chr5.2:76347359-76347378 MS.gene016996:CDS 35.0%
GAGTGCTTTCATTTATCTTC+TGG - chr5.2:76344088-76344107 MS.gene016996:CDS 35.0%
GATAATTATTGTACTGCAGG+AGG - chr5.2:76344475-76344494 MS.gene016996:CDS 35.0%
GCAGATAAATTCTCATCTGT+TGG + chr5.2:76344565-76344584 None:intergenic 35.0%
GTAATGTTCACATGGAACTA+TGG - chr5.2:76347330-76347349 MS.gene016996:CDS 35.0%
GTCATCTTACATGGAAATGA+TGG - chr5.2:76345240-76345259 MS.gene016996:CDS 35.0%
TAAAAATGAGGAGATAGACG+TGG - chr5.2:76345135-76345154 MS.gene016996:intron 35.0%
TAAAATGACCGAAAATAGCC+GGG + chr5.2:76347488-76347507 None:intergenic 35.0%
TACTGAAATGAGACACGAAA+AGG + chr5.2:76345605-76345624 None:intergenic 35.0%
TAGCTCACTATCATCAAATG+TGG - chr5.2:76345200-76345219 MS.gene016996:CDS 35.0%
TATACAAGACCTCATTCTCA+GGG - chr5.2:76344028-76344047 MS.gene016996:CDS 35.0%
TATCACCTTAATATCAGCTC+CGG - chr5.2:76344806-76344825 MS.gene016996:intron 35.0%
TCACGAAGATTGTCCAAATT+TGG - chr5.2:76346038-76346057 MS.gene016996:CDS 35.0%
TCTGAGCAATTTGTAGAACA+AGG - chr5.2:76343811-76343830 MS.gene016996:CDS 35.0%
TCTTAAAGTGAATTCTTGCC+TGG + chr5.2:76346398-76346417 None:intergenic 35.0%
TGAACACGTCAGTAAAAATG+AGG - chr5.2:76345123-76345142 MS.gene016996:intron 35.0%
TGTTCTACAAATTGCTCAGA+AGG + chr5.2:76343811-76343830 None:intergenic 35.0%
TGTTGTCACAAACATAACAG+TGG + chr5.2:76347142-76347161 None:intergenic 35.0%
TTCAGCCAAAACTCACATAA+AGG - chr5.2:76344311-76344330 MS.gene016996:CDS 35.0%
TTCCTATGTGATACCATCTT+AGG - chr5.2:76346109-76346128 MS.gene016996:CDS 35.0%
! ATATTAAGGTGATAGCTTGC+AGG + chr5.2:76344800-76344819 None:intergenic 35.0%
! CTTTGTTTAGCTGTCACAAT+TGG - chr5.2:76346680-76346699 MS.gene016996:intron 35.0%
! GAGGTCTTGTATACATAAAG+AGG + chr5.2:76344021-76344040 None:intergenic 35.0%
! TCAGTATTTTCAGCAGTTTC+AGG - chr5.2:76345619-76345638 MS.gene016996:CDS 35.0%
! TCATTTTCCCTAAATGTGTG+AGG + chr5.2:76347029-76347048 None:intergenic 35.0%
! TTAGGGACATTTTCGTAACT+TGG - chr5.2:76346977-76346996 MS.gene016996:intron 35.0%
! TTTAGGTTTCTCAAAACCAC+TGG - chr5.2:76345945-76345964 MS.gene016996:CDS 35.0%
! TTTCTGCAGAAGCTGTATTT+TGG - chr5.2:76346474-76346493 MS.gene016996:intron 35.0%
!! TTCGCTCTCTTTCATTTTTC+TGG - chr5.2:76347305-76347324 MS.gene016996:CDS 35.0%
!!! AACTACTTTTCTTGGTTTGC+AGG - chr5.2:76347105-76347124 MS.gene016996:intron 35.0%
!!! ACTACTTTTCTTGGTTTGCA+GGG - chr5.2:76347106-76347125 MS.gene016996:intron 35.0%
!!! ATGTTTTCATTTTTGGTCCC+TGG + chr5.2:76345314-76345333 None:intergenic 35.0%
!!! CCTTGTTTTCCACATCAAAT+TGG + chr5.2:76347371-76347390 None:intergenic 35.0%
!!! TCAAATGTGGTTTTGACATG+TGG - chr5.2:76345213-76345232 MS.gene016996:CDS 35.0%
!!! TGATTTTTTTGCCTCTGCAT+AGG + chr5.2:76347970-76347989 None:intergenic 35.0%
AAGTGAATTCTTGCCTGGTA+TGG + chr5.2:76346393-76346412 None:intergenic 40.0%
ACTCTAGCATACCAAAGTCT+AGG - chr5.2:76343967-76343986 MS.gene016996:CDS 40.0%
ACTTGCATGACAATTGGTGA+TGG - chr5.2:76344694-76344713 MS.gene016996:intron 40.0%
ACTTGTACAACAAGTAACCC+CGG + chr5.2:76344828-76344847 None:intergenic 40.0%
AGAACAAGGAATATCTCACC+AGG - chr5.2:76343825-76343844 MS.gene016996:CDS 40.0%
AGTAAATGACATCCGTTCCA+TGG - chr5.2:76345042-76345061 MS.gene016996:intron 40.0%
AGTTTCTACAAAGCCATACC+AGG - chr5.2:76346377-76346396 MS.gene016996:intron 40.0%
ATCACCTTAATATCAGCTCC+GGG - chr5.2:76344807-76344826 MS.gene016996:intron 40.0%
ATGTATGCCAAAATCAGGCA+CGG + chr5.2:76346311-76346330 None:intergenic 40.0%
ATGTGATACCATCTTAGGTG+TGG - chr5.2:76346114-76346133 MS.gene016996:CDS 40.0%
ATGTGTTCCATGATGCTGAA+TGG + chr5.2:76345802-76345821 None:intergenic 40.0%
CAAAGTCTAGGAGTAGTCTA+TGG - chr5.2:76343979-76343998 MS.gene016996:CDS 40.0%
CACCTAAGATGGTATCACAT+AGG + chr5.2:76346114-76346133 None:intergenic 40.0%
CAGAAGATTCTGCTGATACA+TGG - chr5.2:76344593-76344612 MS.gene016996:CDS 40.0%
CAGAGAACCTGATATTATGC+TGG - chr5.2:76348049-76348068 MS.gene016996:intron 40.0%
CAGCTTCTGCAGAAAAATAG+TGG + chr5.2:76346469-76346488 None:intergenic 40.0%
CATAGACTACTCCTAGACTT+TGG + chr5.2:76343981-76344000 None:intergenic 40.0%
CATGATGCTGAATGGAGAAA+AGG + chr5.2:76345794-76345813 None:intergenic 40.0%
CCACATGTCAACACCATATT+GGG - chr5.2:76345077-76345096 MS.gene016996:intron 40.0%
CCATCATGTTTGTATCCCTA+AGG + chr5.2:76346706-76346725 None:intergenic 40.0%
CCTTAGGGATACAAACATGA+TGG - chr5.2:76346703-76346722 MS.gene016996:intron 40.0%
CGAAGGAGTTCTACATGTTT+CGG - chr5.2:76347616-76347635 MS.gene016996:intron 40.0%
CTGCAATGACTCGACTTTAT+AGG + chr5.2:76347901-76347920 None:intergenic 40.0%
GAAATGAGACACGAAAAGGA+TGG + chr5.2:76345601-76345620 None:intergenic 40.0%
GACTAACATGAACATCAGCA+CGG + chr5.2:76345179-76345198 None:intergenic 40.0%
GAGACAATGTATGCTGACAT+GGG - chr5.2:76346136-76346155 MS.gene016996:CDS 40.0%
GATTACGCCTCACACATTTA+GGG - chr5.2:76347019-76347038 MS.gene016996:intron 40.0%
GCATGTCTTTGTAACCGTAT+CGG + chr5.2:76347650-76347669 None:intergenic 40.0%
GCTACTTCCAGCATAATATC+AGG + chr5.2:76348059-76348078 None:intergenic 40.0%
GGAGTTGTGCTTTCAATAAC+AGG - chr5.2:76345993-76346012 MS.gene016996:CDS 40.0%
GTATACAAGACCTCATTCTC+AGG - chr5.2:76344027-76344046 MS.gene016996:CDS 40.0%
GTCATGTCTGCTGATGATAA+TGG - chr5.2:76344150-76344169 MS.gene016996:CDS 40.0%
GTGAGCAAGATGTTATCCTT+AGG - chr5.2:76347396-76347415 MS.gene016996:CDS 40.0%
GTGATTACTCCTGCAATATC+AGG - chr5.2:76344718-76344737 MS.gene016996:intron 40.0%
GTGTCTTCAAGTAGTCAACT+TGG - chr5.2:76346927-76346946 MS.gene016996:intron 40.0%
GTGTGTCTTATCTGTTCCTT+TGG - chr5.2:76344214-76344233 MS.gene016996:CDS 40.0%
TAAACAGAAAGTTGACGCTG+CGG + chr5.2:76344999-76345018 None:intergenic 40.0%
TGATGTGGAAAACAAGGTCT+CGG - chr5.2:76347374-76347393 MS.gene016996:CDS 40.0%
TGATTACGCCTCACACATTT+AGG - chr5.2:76347018-76347037 MS.gene016996:intron 40.0%
TGTACAAGTAAAAGGGAGCT+TGG - chr5.2:76344839-76344858 MS.gene016996:intron 40.0%
TGTGGCATATTTATCCTCCA+TGG + chr5.2:76345062-76345081 None:intergenic 40.0%
TGTGGCATTGTCATCTTACA+TGG - chr5.2:76345231-76345250 MS.gene016996:CDS 40.0%
TGTTGGCCATCACATGAAAA+TGG + chr5.2:76347864-76347883 None:intergenic 40.0%
TTAGCTTACTGTCATGGAGT+TGG + chr5.2:76345663-76345682 None:intergenic 40.0%
TTATCCTTAGGACCATGCTT+AGG - chr5.2:76347408-76347427 MS.gene016996:CDS 40.0%
TTGGGAACTTGCATGACAAT+TGG - chr5.2:76344688-76344707 MS.gene016996:intron 40.0%
! AGTATATCCGTGCCTGATTT+TGG - chr5.2:76346301-76346320 MS.gene016996:intron 40.0%
! CTTTTCTCCATTCAGCATCA+TGG - chr5.2:76345792-76345811 MS.gene016996:intron 40.0%
! CTTTTGTGCATCAGTGGTAT+TGG - chr5.2:76345861-76345880 MS.gene016996:intron 40.0%
! GTATGAACAATCTTGACTCG+AGG + chr5.2:76346602-76346621 None:intergenic 40.0%
! TCATCTGTTGGTTGCTGATT+AGG + chr5.2:76344553-76344572 None:intergenic 40.0%
! TGAAAATGAGACCGATTCCT+GGG + chr5.2:76347446-76347465 None:intergenic 40.0%
! TGTGTCACTATCACCCAATA+TGG + chr5.2:76345093-76345112 None:intergenic 40.0%
!! AACATGATGGGTCATGCATA+TGG - chr5.2:76346716-76346735 MS.gene016996:intron 40.0%
!! GATATACTTGTCGGTTCCAT+CGG + chr5.2:76345902-76345921 None:intergenic 40.0%
!! GTTTGGTTAGCTTACTGTCA+TGG + chr5.2:76345669-76345688 None:intergenic 40.0%
!! TAAACCGAAAGTTGATGCCA+GGG - chr5.2:76345294-76345313 MS.gene016996:CDS 40.0%
!! TCTGCTGATGATAATGGAGA+AGG - chr5.2:76344156-76344175 MS.gene016996:CDS 40.0%
!! TGCCTGATTTTGGCATACAT+GGG - chr5.2:76346311-76346330 MS.gene016996:intron 40.0%
!! TGTTCTTTGAAAAGCACCCT+AGG - chr5.2:76344635-76344654 MS.gene016996:CDS 40.0%
!! TTAAACCGAAAGTTGATGCC+AGG - chr5.2:76345293-76345312 MS.gene016996:CDS 40.0%
AAAAGCCATGCTGCAACAAC+TGG + chr5.2:76345846-76345865 None:intergenic 45.0%
AAAGCCATGCTGCAACAACT+GGG + chr5.2:76345845-76345864 None:intergenic 45.0%
AAATGACATCCGTTCCATGG+AGG - chr5.2:76345045-76345064 MS.gene016996:intron 45.0%
AACAACTGGGGCAAACATGA+AGG + chr5.2:76345832-76345851 None:intergenic 45.0%
ACTAACACCTGATGGAATGC+TGG + chr5.2:76347522-76347541 None:intergenic 45.0%
AGGACTCGTCTTGAAGTTGT+TGG + chr5.2:76347881-76347900 None:intergenic 45.0%
AGGATGGTCATAGACCGAAA+CGG + chr5.2:76345585-76345604 None:intergenic 45.0%
ATAGACCGAAACGGACAAAC+AGG + chr5.2:76345576-76345595 None:intergenic 45.0%
CACCCATGTATGCCAAAATC+AGG + chr5.2:76346316-76346335 None:intergenic 45.0%
CATTGTCTCCACACCTAAGA+TGG + chr5.2:76346125-76346144 None:intergenic 45.0%
CTGTACCTGTTTGTCCGTTT+CGG - chr5.2:76345568-76345587 MS.gene016996:CDS 45.0%
GAAGGATGGTTGTCGTTAAG+TGG - chr5.2:76345972-76345991 MS.gene016996:CDS 45.0%
GCCACATGTCAACACCATAT+TGG - chr5.2:76345076-76345095 MS.gene016996:intron 45.0%
GCTCAATTTCCCTGAGAATG+AGG + chr5.2:76344040-76344059 None:intergenic 45.0%
GGAGACAATGTATGCTGACA+TGG - chr5.2:76346135-76346154 MS.gene016996:CDS 45.0%
TAACCCCGGAGCTGATATTA+AGG + chr5.2:76344814-76344833 None:intergenic 45.0%
TAATCTTGCTTCCGGTATCC+CGG - chr5.2:76347467-76347486 MS.gene016996:intron 45.0%
TCACCTTAATATCAGCTCCG+GGG - chr5.2:76344808-76344827 MS.gene016996:intron 45.0%
TCCTACAACAGCAGCAAAAG+TGG + chr5.2:76346516-76346535 None:intergenic 45.0%
TTCTGGCCGTAATGTTCACA+TGG - chr5.2:76347322-76347341 MS.gene016996:CDS 45.0%
! AAACCACTGGCATTGAAGGA+TGG - chr5.2:76345958-76345977 MS.gene016996:CDS 45.0%
! AGATTAGTCATCCGCAGGAT+TGG - chr5.2:76347591-76347610 MS.gene016996:intron 45.0%
! CTCAAAACCACTGGCATTGA+AGG - chr5.2:76345954-76345973 MS.gene016996:CDS 45.0%
! CTGAAAATGAGACCGATTCC+TGG + chr5.2:76347447-76347466 None:intergenic 45.0%
! GACAGTGCCTCACACATTTT+AGG + chr5.2:76346788-76346807 None:intergenic 45.0%
! GTGAAAGATTAGTCATCCGC+AGG - chr5.2:76347586-76347605 MS.gene016996:intron 45.0%
! TTTCGGTGCATTGTCCGATA+CGG - chr5.2:76347633-76347652 MS.gene016996:intron 45.0%
!! AACAGTCCTTTCTGGAACCT+AGG + chr5.2:76344655-76344674 None:intergenic 45.0%
!! ACAGTCCTTTCTGGAACCTA+GGG + chr5.2:76344654-76344673 None:intergenic 45.0%
!! AGCTGTCACAATTGGCCTTA+GGG - chr5.2:76346688-76346707 MS.gene016996:intron 45.0%
!! CCCAATATGGTGTTGACATG+TGG + chr5.2:76345080-76345099 None:intergenic 45.0%
!! GATTTTGGCATACATGGGTG+AGG - chr5.2:76346316-76346335 MS.gene016996:intron 45.0%
!! GTGCCTGATTTTGGCATACA+TGG - chr5.2:76346310-76346329 MS.gene016996:intron 45.0%
!! TAGCTGTCACAATTGGCCTT+AGG - chr5.2:76346687-76346706 MS.gene016996:intron 45.0%
!! TGCACAGCATTGGCTTATGA+TGG + chr5.2:76346567-76346586 None:intergenic 45.0%
!!! CTTTTCTTGGTTTGCAGGGT+TGG - chr5.2:76347110-76347129 MS.gene016996:intron 45.0%
AAGCACCCTAGGTTCCAGAA+AGG - chr5.2:76344646-76344665 MS.gene016996:intron 50.0%
AAGCCATGCTGCAACAACTG+GGG + chr5.2:76345844-76345863 None:intergenic 50.0%
ACCGAAAATAGCCGGGATAC+CGG + chr5.2:76347481-76347500 None:intergenic 50.0%
ACTCCTTCGAACCAATCCTG+CGG + chr5.2:76347605-76347624 None:intergenic 50.0%
AGTTGGGCATTCCTATGCAG+AGG - chr5.2:76347956-76347975 MS.gene016996:CDS 50.0%
ATTGGGATCCATCCTCCTTC+AGG + chr5.2:76347285-76347304 None:intergenic 50.0%
CAACCATCCTTCAATGCCAG+TGG + chr5.2:76345964-76345983 None:intergenic 50.0%
CATGCCTAAGCATGGTCCTA+AGG + chr5.2:76347415-76347434 None:intergenic 50.0%
CTTAGGACCATGCTTAGGCA+TGG - chr5.2:76347413-76347432 MS.gene016996:intron 50.0%
TCTGTCTGCAAAGTCCCTGA+AGG - chr5.2:76347267-76347286 MS.gene016996:CDS 50.0%
TGGTCCCTGGCATCAACTTT+CGG + chr5.2:76345301-76345320 None:intergenic 50.0%
TTGGGATCCATCCTCCTTCA+GGG + chr5.2:76347284-76347303 None:intergenic 50.0%
! GCATGGCTTTTGTGCATCAG+TGG - chr5.2:76345855-76345874 MS.gene016996:intron 50.0%
!! TCCGGTATCCCGGCTATTTT+CGG - chr5.2:76347477-76347496 MS.gene016996:intron 50.0%
!!! GCCACTTTTGCTGCTGTTGT+AGG - chr5.2:76346512-76346531 MS.gene016996:intron 50.0%
ACACGGACCATGCCTAAGCA+TGG + chr5.2:76347423-76347442 None:intergenic 55.0%
ATGGTCCGTGTCCCAGGAAT+CGG - chr5.2:76347432-76347451 MS.gene016996:intron 55.0%
CGTGGCATATCAGCTCCATG+TGG - chr5.2:76345153-76345172 MS.gene016996:intron 55.0%
GCAAAGTCCCTGAAGGAGGA+TGG - chr5.2:76347274-76347293 MS.gene016996:CDS 55.0%
GTCTGCAAAGTCCCTGAAGG+AGG - chr5.2:76347270-76347289 MS.gene016996:CDS 55.0%
TGAACATCAGCACGGCCACA+TGG + chr5.2:76345171-76345190 None:intergenic 55.0%
TTGCCCCAGTTGTTGCAGCA+TGG - chr5.2:76345838-76345857 MS.gene016996:intron 55.0%
! TGAGACCGATTCCTGGGACA+CGG + chr5.2:76347440-76347459 None:intergenic 55.0%
!! CATCCGCAGGATTGGTTCGA+AGG - chr5.2:76347599-76347618 MS.gene016996:intron 55.0%
TTAGGCATGGTCCGTGTCCC+AGG - chr5.2:76347426-76347445 MS.gene016996:intron 60.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 76343802 76348121 76343802 ID=MS.gene016996
chr5.2 mRNA 76343802 76348121 76343802 ID=MS.gene016996.t1;Parent=MS.gene016996
chr5.2 exon 76348077 76348121 76348077 ID=MS.gene016996.t1.exon1;Parent=MS.gene016996.t1
chr5.2 CDS 76348077 76348121 76348077 ID=cds.MS.gene016996.t1;Parent=MS.gene016996.t1
chr5.2 exon 76347746 76347989 76347746 ID=MS.gene016996.t1.exon2;Parent=MS.gene016996.t1
chr5.2 CDS 76347746 76347989 76347746 ID=cds.MS.gene016996.t1;Parent=MS.gene016996.t1
chr5.2 exon 76347184 76347429 76347184 ID=MS.gene016996.t1.exon3;Parent=MS.gene016996.t1
chr5.2 CDS 76347184 76347429 76347184 ID=cds.MS.gene016996.t1;Parent=MS.gene016996.t1
chr5.2 exon 76346250 76346300 76346250 ID=MS.gene016996.t1.exon4;Parent=MS.gene016996.t1
chr5.2 CDS 76346250 76346300 76346250 ID=cds.MS.gene016996.t1;Parent=MS.gene016996.t1
chr5.2 exon 76345909 76346169 76345909 ID=MS.gene016996.t1.exon5;Parent=MS.gene016996.t1
chr5.2 CDS 76345909 76346169 76345909 ID=cds.MS.gene016996.t1;Parent=MS.gene016996.t1
chr5.2 exon 76345740 76345792 76345740 ID=MS.gene016996.t1.exon6;Parent=MS.gene016996.t1
chr5.2 CDS 76345740 76345792 76345740 ID=cds.MS.gene016996.t1;Parent=MS.gene016996.t1
chr5.2 exon 76345525 76345639 76345525 ID=MS.gene016996.t1.exon7;Parent=MS.gene016996.t1
chr5.2 CDS 76345525 76345639 76345525 ID=cds.MS.gene016996.t1;Parent=MS.gene016996.t1
chr5.2 exon 76345186 76345440 76345186 ID=MS.gene016996.t1.exon8;Parent=MS.gene016996.t1
chr5.2 CDS 76345186 76345440 76345186 ID=cds.MS.gene016996.t1;Parent=MS.gene016996.t1
chr5.2 exon 76344761 76344796 76344761 ID=MS.gene016996.t1.exon9;Parent=MS.gene016996.t1
chr5.2 CDS 76344761 76344796 76344761 ID=cds.MS.gene016996.t1;Parent=MS.gene016996.t1
chr5.2 exon 76343802 76344658 76343802 ID=MS.gene016996.t1.exon10;Parent=MS.gene016996.t1
chr5.2 CDS 76343802 76344658 76343802 ID=cds.MS.gene016996.t1;Parent=MS.gene016996.t1
Gene Sequence

>MS.gene016996

ATGAATCCTTCTGAGCAATTTGTAGAACAAGGAATATCTCACCAGGTACTCATTTTTTTCCATTTCAAATATGAAATTGTGTGTAGATAATATATATTATTAATTTCTTATGCTTGGTTTCATATGTATCAGAATTTGAAGAGGACATCTTGTGCAAATGTGCTGACTCTAGCATACCAAAGTCTAGGAGTAGTCTATGGTGACTTAAGCACTTCTCCTCTTTATGTATACAAGACCTCATTCTCAGGGAAATTGAGCCTTAAAGAAGATGATGAAGAAATTTTTGGAGTGCTTTCATTTATCTTCTGGACATTTACTATTATTGCTCTCTTCAAATATGTGTTCATTGTCATGTCTGCTGATGATAATGGAGAAGGTACAATCTTCAATCATTGATGATGGTACTTTTGGTGTGTGTCTTATCTGTTCCTTTGGCTTTTAAGCTTATTAAGTCAACTCAATTATAACTACTCATTAAGGACAAAATTATTTTTATAATCACATTATTATTCAGCCAAAACTCACATAAAGGATATTTAGATATTTTTGCTTTACCAAATGAATAAAATGATGACAGAAGCATTGTATATTCTGTCTTTTGTTCTTTACAAATCAAGAGAAATCTCTTTGGTTCATGAGCATCTAAAATTTCTTTCTTATGTTCCTTAATTAGGATAATTATTGTACTGCAGGAGGCACATTTGCATTATACTCACTTCTCTGCAGACATGCAAGACTAAGCATTTTGCCTAATCAGCAACCAACAGATGAGAATTTATCTGCTTATTCAACAGAAGATTCTGCTGATACATGGCAATCTTCTCTTTTGAAGCTGTTCTTTGAAAAGCACCCTAGGTTCCAGAAAGGACTGTTAATCTTTGTTCTGTTGGGAACTTGCATGACAATTGGTGATGGTGTGATTACTCCTGCAATATCAGGTATTTTGATCAGGAGCATCCCCTCTCAGATCATATTATGATGTTTACTTCATGATTCCTGCAAGCTATCACCTTAATATCAGCTCCGGGGTTACTTGTTGTACAAGTAAAAGGGAGCTTGGTCTTCTAAAAAACAGAATGGTTTAAATGTGTTTTGTCCCCATAAATAGAGCGAATTTCGGTTTTAGTCCCTATATTAAATACCTTTTTTTTTCTTTTTCATCCTTAATTACAGAATCATGTATTTGATTTTTGTCCGCAGCGTCAACTTTCTGTTTAAAATAACTGATGTGGCAAATACAAGTAAATGACATCCGTTCCATGGAGGATAAATATGCCACATGTCAACACCATATTGGGTGATAGTGACACATCAACACTAATGAACACGTCAGTAAAAATGAGGAGATAGACGTGGCATATCAGCTCCATGTGGCCGTGCTGATGTTCATGTTAGTCGTAGCTCACTATCATCAAATGTGGTTTTGACATGTGGCATTGTCATCTTACATGGAAATGATGGTGTGTACCTCTGTTTACAACATAAGCTTTTTTAAACCGAAAGTTGATGCCAGGGACCAAAAATGAAAACATTTGATTTTGCAGGGACTAAACATAATATTTAAACCAAAAAGAATTATGTTATCCATCATTAGCAATGTCACAGATACACATATGCATTCCTTAAATTGTAACTTTAGCTGATTAGTAATTGCTAGAATTCATTATTTCTCATTAATGTGATTAGACAAAAGCACATTTCAGAAAAAATAATTGGACTGTTTACCGAAAATATACTGTTTCAAGAGTTGATCCTTATACAAAGTTCTGTACCTGTTTGTCCGTTTCGGTCTATGACCATCCTTTTCGTGTCTCATTTCAGTATTTTCAGCAGTTTCAGGAGTTCAAGTTAAGATCAACCAACTCCATGACAGTAAGCTAACCAAACTTCTATCATTACCATTATGTCTATTAAAAGCATAATTTTAAAACTTTACATTATGTATTGCGCAGATTATGTTGTTATAGTCTCATGTATCATTTTAGTTGGCCTTTTCTCCATTCAGCATCATGGAACACATAGAGTTGCCTTCATGTTTGCCCCAGTTGTTGCAGCATGGCTTTTGTGCATCAGTGGTATTGGTATATACAATATATTCCGATGGAACCGACAAGTATATCGTGCACTTTCACCAGTCTATATGTTTAGGTTTCTCAAAACCACTGGCATTGAAGGATGGTTGTCGTTAAGTGGAGTTGTGCTTTCAATAACAGGTACCTATTAGTTAGTCAAAATGTCACGAAGATTGTCCAAATTTGGTTGTACAACAAATCATTTCTCTTTCAGCTAAAGAGCTACGAGATTAATTTCCTATGTGATACCATCTTAGGTGTGGAGACAATGTATGCTGACATGGGTCATTTTTCAGCACTCTCAATAAAGGTAAATTAAAAGTATACAATAATTAACAATATTGATCACAAGTATATTAGTCTAGCATACAAAAATGAAATCTGATTTAACAGTTGCACTTAAATATCAGATAGCCTTCACATGTTTAGTATATCCGTGCCTGATTTTGGCATACATGGGTGAGGCTGCATTTCTCTCTAAGCATCATTATGACATTGAGAGAAGTTTCTACAAAGCCATACCAGGCAAGAATTCACTTTAAGAAACCACAAAGATATCGATATTATTTATGATAACTCTAGGGTAACTGTGCCACTATTTTTCTGCAGAAGCTGTATTTTGGCCAGTTTTTATAGTGGCCACTTTTGCTGCTGTTGTAGGAAGTCAAGCAGTGATTTCTGCAACTTTTTCCATCATAAGCCAATGCTGTGCATTAAATTGTTTTCCTCGAGTCAAGATTGTTCATACTTCTAGCAAAATATATGGACAGATTTATGTTCCAGAAATCAATTGGATATTAATGTGCCTTTGTTTAGCTGTCACAATTGGCCTTAGGGATACAAACATGATGGGTCATGCATATGGTATGATATCTTTTTCCATTGTGTTTAGATTAAACAATCATTTTTATCCTAAAATGTGTGAGGCACTGTCACAATAGTCTCTAGCGTATCAAATTATAAAAATAAAATGAAAAACTACATAAATGCGTCTTTCATTAGTCCGTTTCTTCATCAAATGTATCTTTTCATTAATTAGTTTAATTATTGAATGTGTCTTCAAGTAGTCAACTTGGTCCATAAAATTACAAACAAAAGACACTTTAGGGACATTTTCGTAACTTGGATACAATCATTATTATAGTGATTACGCCTCACACATTTAGGGAAAATGACTGTTTATTCTTATATTTACTCATTATGATACTTGAAGTATGGAAAACTAAATTTAAACTACTTTTCTTGGTTTGCAGGGTTGGCTATCACCACTGTTATGTTTGTGACAACATGTTTGATGACACTAGTAATTATAATTGTTTGGAAACAAGGGATAATAAAAGCACTTACATGTTTCCTATTGTTTGGATCTATTGAACTTCTTTACATCTCAGCTTCTGTCTGCAAAGTCCCTGAAGGAGGATGGATCCCAATTTCGCTCTCTTTCATTTTTCTGGCCGTAATGTTCACATGGAACTATGGAACAATGAAGAAACACCAATTTGATGTGGAAAACAAGGTCTCGGTGAGCAAGATGTTATCCTTAGGACCATGCTTAGGCATGGTCCGTGTCCCAGGAATCGGTCTCATTTTCAGTAATCTTGCTTCCGGTATCCCGGCTATTTTCGGTCATTTTATTACAAATTTACCAGCATTCCATCAGGTGTTAGTTTTTGTATGTACTAAATCAGTTCAAGTCCCTTATGTCAATGAAAGTGAAAGATTAGTCATCCGCAGGATTGGTTCGAAGGAGTTCTACATGTTTCGGTGCATTGTCCGATACGGTTACAAAGACATGCAACAAGAGAATTACAATTTTGACAATAAATTGATATCTGCAATAATTCAGTTTATAGAAATAGAAGACAATGTTCCAGAACAAACAAATGAATTGACTATAGATGATGGAAGAAACATAAATGTGGAAAATCTCGGTGCTTCACAACACACCTTGAAATTGAATTGGTCACATTCTGAAAAGAATTGTTTACCATTTTCATGTGATGGCCAACAACTTCAAGACGAGTCCTATAAAGTCGAGTCATTGCAGATTTTAAAAGCCAAAGAATCAGGTGTTACTTATATAGTTGGGCATTCCTATGCAGAGGCAAAAAAATCATCTTCCATTTTAAAGAAATTTGGAATAGATGTTGTTTATGCTTTTCTAAGCAAAAATTGCAGAGAACCTGATATTATGCTGGAAGTAGCCCATACTTCTTTGTTAGAAGTTGGTATGGTTTACCATGTATAA
Protein sequence

>MS.gene016996.t1

MNPSEQFVEQGISHQNLKRTSCANVLTLAYQSLGVVYGDLSTSPLYVYKTSFSGKLSLKEDDEEIFGVLSFIFWTFTIIALFKYVFIVMSADDNGEGGTFALYSLLCRHARLSILPNQQPTDENLSAYSTEDSADTWQSSLLKLFFEKHPRFQKGLLIFVLLGTCMTIGDGVITPAISVFSAVSGVQVKINQLHDNYVVIVSCIILVGLFSIQHHGTHRVAFMFAPVVAAWLLCISGIGIYNIFRWNRQVYRALSPVYMFRFLKTTGIEGWLSLSGVVLSITGVETMYADMGHFSALSIKIAFTCLVYPCLILAYMGEAAFLSKHHYDIERSFYKAIPEAVFWPVFIVATFAAVVGSQAVISATFSIISQCCALNCFPRVKIVHTSSKIYGQIYVPEINWILMCLCLAVTIGLRDTNMMGHAYGLAITTVMFVTTSSVCKVPEGGWIPISLSFIFLAVMFTWNYGTMKKHQFDVENKVSVSKMLSLGPCLGMVRVPGIGLIFSNLASGIPAIFGHFITNLPAFHQVLVFVCTKSVQVPYVNESERLVIRRIGSKEFYMFRCIVRYGYKDMQQENYNFDNKLISAIIQFIEIEDNVPEQTNELTIDDGRNINVENLGASQHTLKLNWSHSEKNCLPFSCDGQQLQDESYKVESLQILKAKESGVTYIVGHSYAEAKKSSSILKKFGIDVVYAFLSKNCREPDIMLEVAHTSLLEVGMVYHV