AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene049395

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049395.t1 MTR_3g094090 99.244 794 6 0 1 794 1 794 0.0 1625
MS.gene049395.t1 MTR_3g094090 99.672 609 2 0 186 794 1 609 0.0 1256
MS.gene049395.t1 MTR_6g007697 63.832 788 250 8 14 792 13 774 0.0 1035
MS.gene049395.t1 MTR_5g034500 59.530 808 287 10 1 794 1 782 0.0 956
MS.gene049395.t1 MTR_6g033165 53.970 806 323 10 6 794 45 819 0.0 847
MS.gene049395.t1 MTR_5g071860 52.625 781 322 10 14 792 18 752 0.0 826
MS.gene049395.t1 MTR_5g071630 49.435 797 322 15 3 792 1 723 0.0 754
MS.gene049395.t1 MTR_8g099090 47.081 788 392 9 14 792 19 790 0.0 736
MS.gene049395.t1 MTR_5g071827 51.549 710 296 10 85 792 1 664 0.0 735
MS.gene049395.t1 MTR_2g438150 46.366 798 388 8 1 794 28 789 0.0 697
MS.gene049395.t1 MTR_2g438150 46.241 798 389 8 1 794 28 789 0.0 695
MS.gene049395.t1 MTR_8g107510 44.061 783 419 8 13 791 12 779 0.0 675
MS.gene049395.t1 MTR_4g099260 44.125 800 411 10 1 792 42 813 0.0 674
MS.gene049395.t1 MTR_4g094660 46.433 799 384 11 1 794 28 787 0.0 670
MS.gene049395.t1 MTR_8g063840 44.942 781 397 10 18 794 89 840 0.0 652
MS.gene049395.t1 MTR_8g022130 42.583 782 382 10 11 792 50 764 0.0 626
MS.gene049395.t1 MTR_7g108480 41.507 783 386 8 13 792 58 771 0.0 623
MS.gene049395.t1 MTR_2g438160 52.000 600 276 6 1 596 28 619 0.0 597
MS.gene049395.t1 MTR_8g088200 41.927 799 426 9 1 792 13 780 0.0 597
MS.gene049395.t1 MTR_2g008820 41.869 781 414 12 22 794 101 849 0.0 597
MS.gene049395.t1 MTR_8g063900 46.142 635 327 6 12 639 53 679 0.0 584
MS.gene049395.t1 MTR_5g070670 40.741 783 420 13 22 794 101 849 0.0 560
MS.gene049395.t1 MTR_4g094660 45.369 637 309 8 161 794 1 601 8.84e-176 518
MS.gene049395.t1 MTR_5g034590 63.584 173 63 0 423 595 88 260 2.41e-74 246
MS.gene049395.t1 MTR_5g034590 34.574 188 92 6 84 240 5 192 4.05e-17 84.3
MS.gene049395.t1 MTR_8g022160 52.632 171 76 2 11 181 50 215 3.33e-51 180
MS.gene049395.t1 MTR_1g029310 35.938 128 73 3 171 298 12 130 5.15e-17 78.6
MS.gene049395.t1 MTR_6g045057 37.342 158 91 5 176 331 8 159 2.16e-14 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049395.t1 AT2G40540 77.888 805 156 9 1 794 1 794 0.0 1271
MS.gene049395.t1 AT2G40540 77.888 805 156 9 1 794 1 794 0.0 1271
MS.gene049395.t1 AT2G40540 77.888 805 156 9 1 794 1 794 0.0 1271
MS.gene049395.t1 AT2G40540 77.888 805 156 9 1 794 1 794 0.0 1271
MS.gene049395.t1 AT2G40540 77.888 805 156 9 1 794 1 794 0.0 1271
MS.gene049395.t1 AT5G14880 63.418 790 259 12 14 794 13 781 0.0 991
MS.gene049395.t1 AT1G70300 61.194 804 280 9 1 794 1 782 0.0 984
MS.gene049395.t1 AT3G02050 53.325 797 354 8 4 794 5 789 0.0 795
MS.gene049395.t1 AT2G30070 58.949 609 246 4 14 621 18 623 0.0 758
MS.gene049395.t1 AT2G30070 59.459 74 30 0 721 794 639 712 1.13e-18 91.3
MS.gene049395.t1 AT4G23640 49.554 785 379 7 12 792 2 773 0.0 754
MS.gene049395.t1 AT1G60160 45.283 795 373 14 14 794 81 827 0.0 665
MS.gene049395.t1 AT4G19960 47.409 772 377 8 26 794 62 807 0.0 661
MS.gene049395.t1 AT2G35060 46.617 798 381 12 1 794 36 792 0.0 661
MS.gene049395.t1 AT2G35060 46.617 798 381 12 1 794 36 792 0.0 661
MS.gene049395.t1 AT2G35060 46.617 798 381 12 1 794 36 792 0.0 661
MS.gene049395.t1 AT1G31120 46.366 798 388 10 1 794 35 796 0.0 657
MS.gene049395.t1 AT4G13420 41.875 800 401 9 3 792 38 783 0.0 656
MS.gene049395.t1 AT2G35060 46.558 799 381 13 1 794 36 793 0.0 656
MS.gene049395.t1 AT4G19960 46.447 788 377 9 26 794 62 823 0.0 651
MS.gene049395.t1 AT4G19960 45.865 798 377 9 26 794 62 833 0.0 647
MS.gene049395.t1 AT2G30070 57.624 505 210 4 118 621 2 503 0.0 615
MS.gene049395.t1 AT2G30070 59.459 74 30 0 721 794 519 592 7.51e-19 91.7
MS.gene049395.t1 AT4G33530 41.260 778 424 12 22 794 106 855 0.0 583
MS.gene049395.t1 AT5G09400 41.147 802 422 14 2 794 98 858 0.0 582
MS.gene049395.t1 AT4G19960 46.013 602 302 5 195 794 6 586 1.66e-174 514
MS.gene049395.t1 AT4G33530 38.438 640 365 8 158 794 14 627 1.71e-158 475

Find 185 sgRNAs with CRISPR-Local

Find 275 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCACTTATATTGGCATATA+TGG 0.141485 3.1:-75221652 MS.gene049395:CDS
CTTGGTACTTGTATGGTAAT+TGG 0.184251 3.1:-75223048 MS.gene049395:CDS
GAGACTAATGAAGAGATTTA+TGG 0.198641 3.1:-75223450 MS.gene049395:CDS
TTTACATCCCAGAAATTAAT+TGG 0.199713 3.1:-75221239 MS.gene049395:CDS
CTTACACTGGTGGTGTTTCT+TGG 0.209675 3.1:+75222698 None:intergenic
TCTTGGCCATTTCAATTATA+TGG 0.217988 3.1:-75221812 MS.gene049395:CDS
GCTGGTATTGCTTTCATTCT+TGG 0.223882 3.1:-75220123 MS.gene049395:CDS
TTGGTACTTGTATGGTAATT+GGG 0.231362 3.1:-75223047 MS.gene049395:CDS
CTAGAATGGCTTCTAGCTTT+AGG 0.240333 3.1:-75220792 MS.gene049395:CDS
TTTCAATTATATGGCCATTC+AGG 0.245101 3.1:-75221803 MS.gene049395:intron
CTCTTTATTCATTGATTTGT+AGG 0.245636 3.1:-75223227 MS.gene049395:CDS
GCAAACCTCACTCGTCTTTC+GGG 0.247609 3.1:+75220234 None:intergenic
CAGAGTCTTGGTGTTGTATA+TGG 0.249792 3.1:-75223537 MS.gene049395:CDS
CTTCTGATTGTGGTTCTTCT+TGG 0.250106 3.1:-75223066 MS.gene049395:CDS
GGTATATCCTGCACTTATAT+TGG 0.270715 3.1:-75221661 MS.gene049395:CDS
GTGCTTACCCCAGCCATTTC+CGG 0.289029 3.1:-75223018 MS.gene049395:intron
GCTGACTCTCATATCCTTGT+TGG 0.294680 3.1:+75220346 None:intergenic
CTGCTACTCATCGATCTTAT+AGG 0.300540 3.1:-75220572 MS.gene049395:CDS
AGCTACTATGTCTCCGTTCC+AGG 0.305722 3.1:-75221582 MS.gene049395:intron
CCAACCTCCAATAAAGAAAC+TGG 0.307237 3.1:+75219982 None:intergenic
AACAACGTGCCTAACTTCTT+TGG 0.307827 3.1:-75221033 MS.gene049395:CDS
ATGAGCATCCAATTAATTTC+TGG 0.307961 3.1:+75221231 None:intergenic
AGCAAACCTCACTCGTCTTT+CGG 0.311992 3.1:+75220233 None:intergenic
TTCTTAGAGCTGATGATAAT+GGG 0.314821 3.1:-75223365 MS.gene049395:CDS
GGAATATTACTTTGTATAAC+AGG 0.322568 3.1:-75222284 MS.gene049395:intron
GAAGCTATGTTTGCTGATCT+TGG 0.327250 3.1:-75221829 MS.gene049395:CDS
TAATGATTATAATGCTCATT+TGG 0.343435 3.1:-75220866 MS.gene049395:CDS
CCTACAAGGTACCTCTCTTC+CGG 0.345573 3.1:+75220606 None:intergenic
GCTATTCTAGCTTCTGTTGT+GGG 0.351333 3.1:-75221372 MS.gene049395:CDS
CTACAAGGTACCTCTCTTCC+GGG 0.359054 3.1:+75220607 None:intergenic
TCCCATCACTTGCTTCATAC+TGG 0.360782 3.1:-75222513 MS.gene049395:CDS
AGGAAACAAAGAGCTAAAAT+TGG 0.365379 3.1:+75220984 None:intergenic
AGTAGCCATGTCAGCACAAT+TGG 0.368461 3.1:+75222434 None:intergenic
GTTCTTAGAGCTGATGATAA+TGG 0.369896 3.1:-75223366 MS.gene049395:CDS
GATAAGTGGATGGCTGTCTT+TGG 0.370262 3.1:-75222309 MS.gene049395:CDS
AAGAAGCTGGCACTTAACTA+TGG 0.372161 3.1:-75220060 MS.gene049395:CDS
GGTTCTTCTTGGTACTTGTA+TGG 0.373021 3.1:-75223055 MS.gene049395:CDS
AGTTACAGATTAACTGTGAT+TGG 0.377036 3.1:-75220387 MS.gene049395:CDS
AATTTAGAATACTCTTTCTC+TGG 0.377126 3.1:+75223129 None:intergenic
CTTTGGTGATAGTAGTTTGT+TGG 0.378759 3.1:-75221016 MS.gene049395:CDS
TGGCTGTTTCCCAAGAGTTA+AGG 0.392383 3.1:-75221295 MS.gene049395:CDS
TCATCAGCATGCTGTCTGTT+TGG 0.393866 3.1:+75223183 None:intergenic
TATAGGTGTATAGTAAGATA+TGG 0.400337 3.1:-75220555 MS.gene049395:CDS
TGAGCATCCAATTAATTTCT+GGG 0.403364 3.1:+75221232 None:intergenic
TCTGTTAAGCTTTGCACACT+TGG 0.403454 3.1:+75220288 None:intergenic
AAGTGCAGGATATACCAAAA+AGG 0.406224 3.1:+75221668 None:intergenic
TTGTTTGCACTTCAACACTA+TGG 0.414430 3.1:-75222485 MS.gene049395:CDS
ATTGCCAGGGTCCCTGGAAT+AGG 0.415229 3.1:-75220756 MS.gene049395:CDS
ACAACAAGGTTTCACTAGAA+TGG 0.419139 3.1:-75220806 MS.gene049395:CDS
TTGGAAGACTATTCTGCTAC+TGG 0.426942 3.1:-75223565 MS.gene049395:CDS
TTCTTTATTGGAGGTTGGCA+TGG 0.427269 3.1:-75219977 MS.gene049395:CDS
GATAGGATTCTTACCGGAAA+TGG 0.427379 3.1:+75223005 None:intergenic
CCAGTTTCTTTATTGGAGGT+TGG 0.427965 3.1:-75219982 MS.gene049395:CDS
GTATGAACAACCTTAACTCT+TGG 0.428073 3.1:+75221285 None:intergenic
AGCACTTTCTTCATATAAGA+TGG 0.430100 3.1:-75223160 MS.gene049395:CDS
GAATGGCCATATAATTGAAA+TGG 0.441174 3.1:+75221806 None:intergenic
ATAAGTGGATGGCTGTCTTT+GGG 0.443805 3.1:-75222308 MS.gene049395:CDS
GGATTCTTACCGGAAATGGC+TGG 0.446902 3.1:+75223009 None:intergenic
AAATGAGCATTATAATCATT+AGG 0.453239 3.1:+75220868 None:intergenic
TTAGGAATTGCCAGGGTCCC+TGG 0.454586 3.1:-75220762 MS.gene049395:CDS
GTGAACACAAGGCCTATTCC+AGG 0.455129 3.1:+75220744 None:intergenic
CTATGTATTGCCGTCACCAT+TGG 0.456016 3.1:-75221204 MS.gene049395:CDS
CAAAGTTCCGCGAGGGTGCT+TGG 0.456491 3.1:-75220914 MS.gene049395:CDS
AGGGCCTGACGTGTCACTTA+AGG 0.456997 3.1:-75220010 MS.gene049395:CDS
TCCGGGGTTACATGAGGAAC+AGG 0.459117 3.1:+75220624 None:intergenic
AAACAAATGGATCTTGAACC+TGG 0.462548 3.1:-75223728 None:intergenic
TATGAACAACCTTAACTCTT+GGG 0.463219 3.1:+75221286 None:intergenic
GTCCAAGCTTAGGAATTGCC+AGG 0.464211 3.1:-75220770 MS.gene049395:CDS
CCGGAAGAGAGGTACCTTGT+AGG 0.466371 3.1:-75220606 MS.gene049395:CDS
AGGAAGAGGGCAAGGAGGAT+TGG 0.469920 3.1:+75220888 None:intergenic
CTAGCTTTAGGTCCAAGCTT+AGG 0.471303 3.1:-75220780 MS.gene049395:CDS
ACTAGGACACGGTGATATGC+AGG 0.474345 3.1:+75220669 None:intergenic
GCACTTATATTGGCATATAT+GGG 0.478501 3.1:-75221651 MS.gene049395:CDS
TTGCTCCAATTGTGCTGACA+TGG 0.480391 3.1:-75222439 MS.gene049395:CDS
GCATACTGCTCTTCTGATTG+TGG 0.480604 3.1:-75223076 MS.gene049395:CDS
ACAAAGCGGGAGAAATTCGC+TGG 0.480919 3.1:+75220702 None:intergenic
TTCATCATTCTTGAAGAAGC+TGG 0.483278 3.1:-75220073 MS.gene049395:CDS
CTCAGCAGTATCTGGTCTTG+AGG 0.489203 3.1:-75222733 MS.gene049395:CDS
ACCCTGGCAATTCCTAAGCT+TGG 0.490023 3.1:+75220768 None:intergenic
CTTTATGCTGCTCAAGAAGC+TGG 0.492942 3.1:-75220141 MS.gene049395:CDS
AAGAACTTGAACATATAATA+CGG 0.494672 3.1:+75222344 None:intergenic
TTGAACCTGGGAGGAAGTGT+TGG 0.499293 3.1:-75223715 MS.gene049395:CDS
GAGTTCGATACCAATCGTAT+TGG 0.501227 3.1:+75220463 None:intergenic
GCGTATATAATATATTCAAA+TGG 0.503557 3.1:-75222394 MS.gene049395:CDS
CAGGTCCTACGCGGCCTACA+AGG 0.504050 3.1:+75220592 None:intergenic
CTACTGGCTTACCAGAGTCT+TGG 0.504452 3.1:-75223549 MS.gene049395:CDS
CTACTATCACCAAAGAAGTT+AGG 0.504694 3.1:+75221024 None:intergenic
CTACTGTGCATTAGCACACT+TGG 0.504767 3.1:-75222416 MS.gene049395:CDS
CTTAACAGATGTTATTGAGA+TGG 0.506593 3.1:-75220274 MS.gene049395:CDS
CTTTCGGGCGCAGCATCCAT+CGG 0.509696 3.1:+75220249 None:intergenic
CTATAAGATCGATGAGTAGC+AGG 0.510208 3.1:+75220573 None:intergenic
AATCCTACAGACACGCTACC+TGG 0.511247 3.1:+75220312 None:intergenic
AGCTATTCTAGCTTCTGTTG+TGG 0.512141 3.1:-75221373 MS.gene049395:CDS
CACTATGGTACACATAAGGT+TGG 0.512279 3.1:-75222470 MS.gene049395:CDS
TGCAGAAAGCGTGAGATGGC+CGG 0.514525 3.1:-75221406 MS.gene049395:intron
ATGTTCCACTGATGATTGCT+TGG 0.514640 3.1:+75221346 None:intergenic
TGAACCTGGGAGGAAGTGTT+GGG 0.514870 3.1:-75223714 MS.gene049395:CDS
GATTCTTACCGGAAATGGCT+GGG 0.515007 3.1:+75223010 None:intergenic
AAACACCTGGGAAATGCATC+AGG 0.515977 3.1:-75221168 MS.gene049395:intron
ATCAGAAAAGATACATGGTC+AGG 0.517967 3.1:-75221262 MS.gene049395:CDS
ATGGATATAATTTCTTGAGA+AGG 0.521502 3.1:-75220041 MS.gene049395:CDS
AAACAAAGAGCTAAAATTGG+TGG 0.523916 3.1:+75220987 None:intergenic
GGAGAAATTCGCTGGGATGC+CGG 0.528570 3.1:+75220710 None:intergenic
ATAAATCAGAGTCAATCTCT+TGG 0.536439 3.1:-75221315 MS.gene049395:CDS
CTATTCTAGCTTCTGTTGTG+GGG 0.536872 3.1:-75221371 MS.gene049395:CDS
TGGTACTTGTATGGTAATTG+GGG 0.541658 3.1:-75223046 MS.gene049395:CDS
TCAACACTATGGTACACATA+AGG 0.544559 3.1:-75222474 MS.gene049395:CDS
GAAGTGTTGGGATAGTTCAA+AGG 0.545829 3.1:-75223702 MS.gene049395:intron
CTAGTGAAACCTTGTTGTGA+AGG 0.546959 3.1:+75220811 None:intergenic
GTGGTGTTTCTTGGACATGA+TGG 0.549521 3.1:+75222707 None:intergenic
ACTTGTATGGTAATTGGGGA+TGG 0.550558 3.1:-75223042 MS.gene049395:CDS
CAACCTCCAATAAAGAAACT+GGG 0.551575 3.1:+75219983 None:intergenic
AGTCAGCAAAGTGTGCAGCC+AGG 0.551960 3.1:-75220330 MS.gene049395:CDS
TACGATTGGTATCGAACTCG+TGG 0.552854 3.1:-75220459 MS.gene049395:CDS
CATATACAACACCAAGACTC+TGG 0.553981 3.1:+75223538 None:intergenic
ATTTAGAGACACAAAACACC+TGG 0.554081 3.1:-75221181 MS.gene049395:CDS
CTATCCCAACACTTCCTCCC+AGG 0.555040 3.1:+75223710 None:intergenic
ATATATGCCAATATAAGTGC+AGG 0.555536 3.1:+75221654 None:intergenic
AGGGAGGTTGGTGACAAAGC+GGG 0.557999 3.1:+75220689 None:intergenic
TTAGAATACTCTTTCTCTGG+AGG 0.560946 3.1:+75223132 None:intergenic
ACTATGGTACACATAAGGTT+GGG 0.561821 3.1:-75222469 MS.gene049395:CDS
AACAAATGGATCTTGAACCT+GGG 0.562805 3.1:-75223727 None:intergenic
GCATTATAATCATTAGGAAG+AGG 0.565169 3.1:+75220874 None:intergenic
TCTTGAGAAGGAATTGTAGA+GGG 0.569945 3.1:-75220029 MS.gene049395:CDS
ACCAGTATGAAGCAAGTGAT+GGG 0.573753 3.1:+75222512 None:intergenic
TGAGGTTGGTGTGCAAATGC+AGG 0.574824 3.1:-75220178 MS.gene049395:CDS
GTGTTCACTGATCTCACTAC+CGG 0.575606 3.1:-75220729 MS.gene049395:CDS
CTCATGTAACCCCGGAAGAG+AGG 0.579166 3.1:-75220617 MS.gene049395:CDS
GTCTCTAAATCCAATGGTGA+CGG 0.581190 3.1:+75221194 None:intergenic
CACCAGTATGAAGCAAGTGA+TGG 0.581489 3.1:+75222511 None:intergenic
CATTATAATCATTAGGAAGA+GGG 0.585288 3.1:+75220875 None:intergenic
TGGCTGCAGAAAGCGTGAGA+TGG 0.586100 3.1:-75221410 MS.gene049395:intron
AAGGCCTATTCCAGGGACCC+TGG 0.586920 3.1:+75220752 None:intergenic
ATTCTTACCGGAAATGGCTG+GGG 0.587473 3.1:+75223011 None:intergenic
CATACATCAGAAAAGATACA+TGG 0.589403 3.1:-75221267 MS.gene049395:CDS
AGAATAGCTAAGATAAGCAC+CGG 0.592033 3.1:+75221387 None:intergenic
CAGCCAGGTAGCGTGTCTGT+AGG 0.592543 3.1:-75220315 MS.gene049395:CDS
ACAAACACATATTTGAAGAG+TGG 0.592621 3.1:+75223390 None:intergenic
AGTATGAGCATTGAGGATGA+TGG 0.593967 3.1:-75220432 MS.gene049395:CDS
TTCTTGAGAAGGAATTGTAG+AGG 0.594347 3.1:-75220030 MS.gene049395:CDS
TGAATATGACCTTCACAACA+AGG 0.594779 3.1:-75220820 MS.gene049395:CDS
AGCAGTGATGACCGTGATGT+TGG 0.596899 3.1:-75221057 MS.gene049395:CDS
ACCTGTTCCTCATGTAACCC+CGG 0.600453 3.1:-75220625 MS.gene049395:CDS
CTCTCTTCCGGGGTTACATG+AGG 0.604872 3.1:+75220618 None:intergenic
ACGGTGATATGCAGGGAGGT+TGG 0.607011 3.1:+75220677 None:intergenic
TCTTATATGAAAACAAAGCA+AGG 0.609165 3.1:-75220096 MS.gene049395:CDS
GAAAGAGCTTTATATACATG+CGG 0.610331 3.1:+75222368 None:intergenic
AAAAGACAAGGATAAGTGGA+TGG 0.612497 3.1:-75222319 MS.gene049395:CDS
AGAGCTGATGATAATGGGGA+AGG 0.616664 3.1:-75223360 MS.gene049395:intron
ATATACCTGATGCATTTCCC+AGG 0.619221 3.1:+75221163 None:intergenic
GGAACCTTAAGTGACACGTC+AGG 0.620717 3.1:+75220006 None:intergenic
TCCAAGCTTAGGAATTGCCA+GGG 0.621282 3.1:-75220769 MS.gene049395:CDS
TGGGAATAGTATGAGCATTG+AGG 0.624273 3.1:-75220439 MS.gene049395:CDS
AGGTACCTTGTAGGCCGCGT+AGG 0.626410 3.1:-75220597 MS.gene049395:CDS
TAATCATTAGGAAGAGGGCA+AGG 0.630253 3.1:+75220880 None:intergenic
TGTTATTGAGATGGAACCGA+TGG 0.632286 3.1:-75220265 MS.gene049395:CDS
TGAACACAAGGCCTATTCCA+GGG 0.632355 3.1:+75220745 None:intergenic
AGTGGATGGCTGTCTTTGGG+TGG 0.633140 3.1:-75222305 MS.gene049395:CDS
ACTTTCTTCATATAAGATGG+AGG 0.634857 3.1:-75223157 MS.gene049395:CDS
ACAGCAATGAATACCTGGAA+CGG 0.635886 3.1:+75221569 None:intergenic
GGGAGCCAAGCAATCATCAG+TGG 0.640267 3.1:-75221351 MS.gene049395:CDS
TCTTAGAGCTGATGATAATG+GGG 0.641130 3.1:-75223364 MS.gene049395:CDS
AACCTCCAATAAAGAAACTG+GGG 0.647207 3.1:+75219984 None:intergenic
CTAGGACACGGTGATATGCA+GGG 0.648925 3.1:+75220670 None:intergenic
TAGTGAGATCAGTGAACACA+AGG 0.650751 3.1:+75220733 None:intergenic
CAAAGCGGGAGAAATTCGCT+GGG 0.651381 3.1:+75220703 None:intergenic
TGAAAGTGAGACAAGGTCTG+AGG 0.659981 3.1:-75220196 MS.gene049395:CDS
GCACGTTGTTACCAACATCA+CGG 0.662323 3.1:+75221046 None:intergenic
ACGATTGGTATCGAACTCGT+GGG 0.668029 3.1:-75220458 MS.gene049395:CDS
CTGCGCCCGAAAGACGAGTG+AGG 0.673470 3.1:-75220239 MS.gene049395:CDS
AGTGAGACAAGGTCTGAGGT+TGG 0.674888 3.1:-75220192 MS.gene049395:CDS
TTTAGAGACACAAAACACCT+GGG 0.675593 3.1:-75221180 MS.gene049395:CDS
CAGGGAGGTTGGTGACAAAG+CGG 0.679360 3.1:+75220688 None:intergenic
TCACTGACAAAGTTCCGCGA+GGG 0.681855 3.1:-75220921 MS.gene049395:CDS
ATGATCATGAAAGTGAGACA+AGG 0.691543 3.1:-75220203 MS.gene049395:CDS
TTGGTAGCCAAGCACCCTCG+CGG 0.692674 3.1:+75220907 None:intergenic
AAATGGATCTTGAACCTGGG+AGG 0.693417 3.1:-75223724 MS.gene049395:CDS
ACCTCCAATAAAGAAACTGG+GGG 0.693955 3.1:+75219985 None:intergenic
AAGTGATATACTTACACTGG+TGG 0.699267 3.1:+75222688 None:intergenic
TCATTAGGAAGAGGGCAAGG+AGG 0.700116 3.1:+75220883 None:intergenic
TTCACTGACAAAGTTCCGCG+AGG 0.701157 3.1:-75220922 MS.gene049395:CDS
TACAAGGTACCTCTCTTCCG+GGG 0.703312 3.1:+75220608 None:intergenic
CAACATCTTGATGAACGTCG+CGG 0.736249 3.1:+75220529 None:intergenic
GATGAGTAGCAGGTCCTACG+CGG 0.737138 3.1:+75220583 None:intergenic
GGACACGGTGATATGCAGGG+AGG 0.810812 3.1:+75220673 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATACTAAATTTGATACTTTA+AGG + chr3.1:75221694-75221713 None:intergenic 15.0%
!! GAATATTTATAGATAGATAT+AGG + chr3.1:75221506-75221525 None:intergenic 15.0%
!! TACTAAATTTGATACTTTAA+GGG + chr3.1:75221693-75221712 None:intergenic 15.0%
!! TTTGGATTTAAAAAATAAGT+AGG + chr3.1:75221482-75221501 None:intergenic 15.0%
!! AAATGAGCATTATAATCATT+AGG + chr3.1:75222820-75222839 None:intergenic 20.0%
!! AAGAACTTGAACATATAATA+CGG + chr3.1:75221344-75221363 None:intergenic 20.0%
!! ACTATGATTTAATTAAGACA+TGG - chr3.1:75221605-75221624 MS.gene049395:CDS 20.0%
!! ATATATACTTGAACAAATTC+TGG - chr3.1:75221642-75221661 MS.gene049395:CDS 20.0%
!! GCGTATATAATATATTCAAA+TGG - chr3.1:75221291-75221310 MS.gene049395:CDS 20.0%
!! TAATGATTATAATGCTCATT+TGG - chr3.1:75222819-75222838 MS.gene049395:intron 20.0%
!! TGAATATTTGTGAAATGAAA+TGG - chr3.1:75220049-75220068 MS.gene049395:CDS 20.0%
!! TGTAAAACATTGTGAAATAA+GGG + chr3.1:75220707-75220726 None:intergenic 20.0%
!! TTGTAAAACATTGTGAAATA+AGG + chr3.1:75220708-75220727 None:intergenic 20.0%
!!! GAAAACATTATGCAAAATTT+TGG - chr3.1:75222255-75222274 MS.gene049395:intron 20.0%
!!! TTATAGATAGATATAGGTTT+TGG + chr3.1:75221500-75221519 None:intergenic 20.0%
!!! TTTCTGTTTGCTATTTATTA+TGG - chr3.1:75221926-75221945 MS.gene049395:intron 20.0%
! AGGGAAATAATGATAGATAA+AGG + chr3.1:75221674-75221693 None:intergenic 25.0%
! ATAAAAACCCACATTAGAAA+AGG + chr3.1:75220022-75220041 None:intergenic 25.0%
! ATCTGCAAACAAAAATCAAT+AGG + chr3.1:75221144-75221163 None:intergenic 25.0%
! ATGGATATAATTTCTTGAGA+AGG - chr3.1:75223644-75223663 MS.gene049395:intron 25.0%
! ATTAACTAGATAAAACACAG+TGG - chr3.1:75222560-75222579 MS.gene049395:intron 25.0%
! ATTTCACACATACAAAAACT+AGG + chr3.1:75223036-75223055 None:intergenic 25.0%
! CATTATAATCATTAGGAAGA+GGG + chr3.1:75222813-75222832 None:intergenic 25.0%
! GGAATATTACTTTGTATAAC+AGG - chr3.1:75221401-75221420 MS.gene049395:CDS 25.0%
! GTAAAACATTGTGAAATAAG+GGG + chr3.1:75220706-75220725 None:intergenic 25.0%
! TAAAACATTGTGAAATAAGG+GGG + chr3.1:75220705-75220724 None:intergenic 25.0%
! TATAAGTGATATACTTACAC+TGG + chr3.1:75221003-75221022 None:intergenic 25.0%
! TATAGGTGTATAGTAAGATA+TGG - chr3.1:75223130-75223149 MS.gene049395:CDS 25.0%
! TATTTGTGAAATGAAATGGA+TGG - chr3.1:75220053-75220072 MS.gene049395:CDS 25.0%
! TCTTATATGAAAACAAAGCA+AGG - chr3.1:75223589-75223608 MS.gene049395:intron 25.0%
! TTCAACTAGTTAATGAACTT+CGG - chr3.1:75220745-75220764 MS.gene049395:CDS 25.0%
! TTTACATCCCAGAAATTAAT+TGG - chr3.1:75222446-75222465 MS.gene049395:CDS 25.0%
!! AATTTAGAATACTCTTTCTC+TGG + chr3.1:75220559-75220578 None:intergenic 25.0%
!!! AATATTTTAACCAACCTGAA+TGG + chr3.1:75221899-75221918 None:intergenic 25.0%
!!! AGACAACTTTTTTACTAGTT+CGG + chr3.1:75223194-75223213 None:intergenic 25.0%
!!! CTCTTTATTCATTGATTTGT+AGG - chr3.1:75220458-75220477 MS.gene049395:CDS 25.0%
!!! CTTTGTTTCCTATTGTTTTT+TGG - chr3.1:75222713-75222732 MS.gene049395:CDS 25.0%
!!! TGCTGTATATCACTTTTTAT+AGG - chr3.1:75222133-75222152 MS.gene049395:intron 25.0%
AAACAAAGAGCTAAAATTGG+TGG + chr3.1:75222701-75222720 None:intergenic 30.0%
ACAAACACATATTTGAAGAG+TGG + chr3.1:75220298-75220317 None:intergenic 30.0%
ACAAGATTTCTTCATTGTTC+TGG - chr3.1:75221103-75221122 MS.gene049395:intron 30.0%
ACACTGCTAACATGTTATAT+TGG + chr3.1:75221041-75221060 None:intergenic 30.0%
ACTTTCTTCATATAAGATGG+AGG - chr3.1:75220528-75220547 MS.gene049395:CDS 30.0%
AGCACTTTCTTCATATAAGA+TGG - chr3.1:75220525-75220544 MS.gene049395:CDS 30.0%
AGGAAACAAAGAGCTAAAAT+TGG + chr3.1:75222704-75222723 None:intergenic 30.0%
AGTTACAGATTAACTGTGAT+TGG - chr3.1:75223298-75223317 MS.gene049395:intron 30.0%
ATAAATCAGAGTCAATCTCT+TGG - chr3.1:75222370-75222389 MS.gene049395:CDS 30.0%
ATATATGCCAATATAAGTGC+AGG + chr3.1:75222034-75222053 None:intergenic 30.0%
ATATGAGTTCGAACTGTAAT+TGG - chr3.1:75220791-75220810 MS.gene049395:CDS 30.0%
ATGAGCATCCAATTAATTTC+TGG + chr3.1:75222457-75222476 None:intergenic 30.0%
CATACATCAGAAAAGATACA+TGG - chr3.1:75222418-75222437 MS.gene049395:CDS 30.0%
CTATAATATGCTATTGTACC+AGG + chr3.1:75222236-75222255 None:intergenic 30.0%
CTTAACAGATGTTATTGAGA+TGG - chr3.1:75223411-75223430 MS.gene049395:CDS 30.0%
GAATGGCCATATAATTGAAA+TGG + chr3.1:75221882-75221901 None:intergenic 30.0%
GAGACTAATGAAGAGATTTA+TGG - chr3.1:75220235-75220254 MS.gene049395:CDS 30.0%
GCACTTATATTGGCATATAT+GGG - chr3.1:75222034-75222053 MS.gene049395:intron 30.0%
GCATTATAATCATTAGGAAG+AGG + chr3.1:75222814-75222833 None:intergenic 30.0%
GTGCTTGTAAAAACATACAA+TGG + chr3.1:75220190-75220209 None:intergenic 30.0%
TAGTTAATGAACTTCGGTTT+AGG - chr3.1:75220751-75220770 MS.gene049395:CDS 30.0%
TATGAACAACCTTAACTCTT+GGG + chr3.1:75222402-75222421 None:intergenic 30.0%
TCAAGTTCTTGAAAAAGACA+AGG - chr3.1:75221354-75221373 MS.gene049395:CDS 30.0%
TCTTGGCCATTTCAATTATA+TGG - chr3.1:75221873-75221892 MS.gene049395:intron 30.0%
TGAGCATCCAATTAATTTCT+GGG + chr3.1:75222456-75222475 None:intergenic 30.0%
TGCACTTATATTGGCATATA+TGG - chr3.1:75222033-75222052 MS.gene049395:intron 30.0%
TGTTATACTCTTATAGACCT+GGG - chr3.1:75221954-75221973 MS.gene049395:intron 30.0%
TTCTTAGAGCTGATGATAAT+GGG - chr3.1:75220320-75220339 MS.gene049395:CDS 30.0%
TTGAAAAAGACAAGGATAAG+TGG - chr3.1:75221362-75221381 MS.gene049395:CDS 30.0%
TTGGTACTTGTATGGTAATT+GGG - chr3.1:75220638-75220657 MS.gene049395:CDS 30.0%
TTGTTATACTCTTATAGACC+TGG - chr3.1:75221953-75221972 MS.gene049395:intron 30.0%
TTTATTAACCCTTCGATTTC+CGG + chr3.1:75220871-75220890 None:intergenic 30.0%
TTTCAATTATATGGCCATTC+AGG - chr3.1:75221882-75221901 MS.gene049395:intron 30.0%
! CATTTCACCTTTTCTAATGT+GGG - chr3.1:75220012-75220031 MS.gene049395:CDS 30.0%
! CTGATTTTATCCAATACGAT+TGG - chr3.1:75223212-75223231 MS.gene049395:CDS 30.0%
! GAAAGAGCTTTATATACATG+CGG + chr3.1:75221320-75221339 None:intergenic 30.0%
! TGATGATTTTCATGTATGTG+TGG - chr3.1:75220415-75220434 MS.gene049395:CDS 30.0%
! TTGATTTTCAGAGAGATTCT+TGG - chr3.1:75220101-75220120 MS.gene049395:CDS 30.0%
! TTTTACTAGTTCGGTTTCAA+AGG + chr3.1:75223185-75223204 None:intergenic 30.0%
! TTTTGTGTCTCTAAATCCAA+TGG + chr3.1:75222500-75222519 None:intergenic 30.0%
!! AGCTCAAATCTATTGATTTG+AGG + chr3.1:75221748-75221767 None:intergenic 30.0%
!! GCTCAAATCTATTGATTTGA+GGG + chr3.1:75221747-75221766 None:intergenic 30.0%
AAAAGACAAGGATAAGTGGA+TGG - chr3.1:75221366-75221385 MS.gene049395:CDS 35.0%
AACCTCCAATAAAGAAACTG+GGG + chr3.1:75223704-75223723 None:intergenic 35.0%
AAGACATGGAATAAGTTCTC+TGG - chr3.1:75221619-75221638 MS.gene049395:CDS 35.0%
AAGTGATATACTTACACTGG+TGG + chr3.1:75221000-75221019 None:intergenic 35.0%
AAGTGCAGGATATACCAAAA+AGG + chr3.1:75222020-75222039 None:intergenic 35.0%
AATTATATGGCCATTCAGGT+TGG - chr3.1:75221886-75221905 MS.gene049395:intron 35.0%
ACAACAAGGTTTCACTAGAA+TGG - chr3.1:75222879-75222898 MS.gene049395:intron 35.0%
ACTATGGTACACATAAGGTT+GGG - chr3.1:75221216-75221235 MS.gene049395:CDS 35.0%
AGAATAGCTAAGATAAGCAC+CGG + chr3.1:75222301-75222320 None:intergenic 35.0%
ATCAGAAAAGATACATGGTC+AGG - chr3.1:75222423-75222442 MS.gene049395:CDS 35.0%
ATGATCATGAAAGTGAGACA+AGG - chr3.1:75223482-75223501 MS.gene049395:CDS 35.0%
ATTTAGAGACACAAAACACC+TGG - chr3.1:75222504-75222523 MS.gene049395:CDS 35.0%
CAACCTCCAATAAAGAAACT+GGG + chr3.1:75223705-75223724 None:intergenic 35.0%
CACATACAAAAACTAGGACA+CGG + chr3.1:75223030-75223049 None:intergenic 35.0%
CACTTATGGTTCTTATTACC+TGG - chr3.1:75222215-75222234 MS.gene049395:intron 35.0%
CGACAGATCCAAAAAACAAT+AGG + chr3.1:75222724-75222743 None:intergenic 35.0%
CTACTATCACCAAAGAAGTT+AGG + chr3.1:75222664-75222683 None:intergenic 35.0%
CTTGGTACTTGTATGGTAAT+TGG - chr3.1:75220637-75220656 MS.gene049395:CDS 35.0%
GATATACAGCAATGAATACC+TGG + chr3.1:75222124-75222143 None:intergenic 35.0%
GCACACAAAGTCAATACATA+AGG + chr3.1:75221829-75221848 None:intergenic 35.0%
GGTATATCCTGCACTTATAT+TGG - chr3.1:75222024-75222043 MS.gene049395:intron 35.0%
GTACTGTTGTAAGAGTAAGA+CGG - chr3.1:75221533-75221552 MS.gene049395:intron 35.0%
GTATGAACAACCTTAACTCT+TGG + chr3.1:75222403-75222422 None:intergenic 35.0%
GTTATACTCTTATAGACCTG+GGG - chr3.1:75221955-75221974 MS.gene049395:intron 35.0%
GTTCTTAGAGCTGATGATAA+TGG - chr3.1:75220319-75220338 MS.gene049395:CDS 35.0%
TCAACACTATGGTACACATA+AGG - chr3.1:75221211-75221230 MS.gene049395:CDS 35.0%
TCATCATGAGCAAAAGAAAC+AGG + chr3.1:75220401-75220420 None:intergenic 35.0%
TCTTGAGAAGGAATTGTAGA+GGG - chr3.1:75223656-75223675 MS.gene049395:intron 35.0%
TGAATATGACCTTCACAACA+AGG - chr3.1:75222865-75222884 MS.gene049395:intron 35.0%
TGGTACTTGTATGGTAATTG+GGG - chr3.1:75220639-75220658 MS.gene049395:CDS 35.0%
TGTTCAGACTTTACTTACTC+CGG - chr3.1:75220823-75220842 MS.gene049395:CDS 35.0%
TTAGAATACTCTTTCTCTGG+AGG + chr3.1:75220556-75220575 None:intergenic 35.0%
TTATTAACCCTTCGATTTCC+GGG + chr3.1:75220870-75220889 None:intergenic 35.0%
TTCATCATTCTTGAAGAAGC+TGG - chr3.1:75223612-75223631 MS.gene049395:intron 35.0%
TTCTTGAGAAGGAATTGTAG+AGG - chr3.1:75223655-75223674 MS.gene049395:intron 35.0%
TTGTTTGCACTTCAACACTA+TGG - chr3.1:75221200-75221219 MS.gene049395:CDS 35.0%
TTTACTTACTCCGGATTACT+GGG - chr3.1:75220832-75220851 MS.gene049395:CDS 35.0%
TTTAGAGACACAAAACACCT+GGG - chr3.1:75222505-75222524 MS.gene049395:CDS 35.0%
! ACGGAATACTATTTTATCCG+AGG - chr3.1:75221552-75221571 MS.gene049395:intron 35.0%
! AGGTTTCTAAAAAGATGCCT+CGG + chr3.1:75221572-75221591 None:intergenic 35.0%
! ATTGTAAAGACATTTTCCCC+AGG + chr3.1:75221974-75221993 None:intergenic 35.0%
! CTTTGGTGATAGTAGTTTGT+TGG - chr3.1:75222669-75222688 MS.gene049395:intron 35.0%
! GCATTTCACCTTTTCTAATG+TGG - chr3.1:75220011-75220030 MS.gene049395:CDS 35.0%
! TCTTAGAGCTGATGATAATG+GGG - chr3.1:75220321-75220340 MS.gene049395:CDS 35.0%
!! TATGTATTGACTTTGTGTGC+AGG - chr3.1:75221829-75221848 MS.gene049395:CDS 35.0%
!! TCATAGTACTTTTGACTCTG+AGG + chr3.1:75221592-75221611 None:intergenic 35.0%
!! TGATAATGGGGAAGGTAATA+AGG - chr3.1:75220333-75220352 MS.gene049395:CDS 35.0%
!!! AATCGACAATGTTTTGATGC+AGG - chr3.1:75222602-75222621 MS.gene049395:intron 35.0%
!!! ATCGACAATGTTTTGATGCA+GGG - chr3.1:75222603-75222622 MS.gene049395:intron 35.0%
!!! GCACACTTTCTTTTGTTTTC+TGG - chr3.1:75220257-75220276 MS.gene049395:CDS 35.0%
AACAACGTGCCTAACTTCTT+TGG - chr3.1:75222652-75222671 MS.gene049395:intron 40.0%
AAGAAGCTGGCACTTAACTA+TGG - chr3.1:75223625-75223644 MS.gene049395:intron 40.0%
ACAGCAATGAATACCTGGAA+CGG + chr3.1:75222119-75222138 None:intergenic 40.0%
ACCAGTATGAAGCAAGTGAT+GGG + chr3.1:75221176-75221195 None:intergenic 40.0%
ACCTCCAATAAAGAAACTGG+GGG + chr3.1:75223703-75223722 None:intergenic 40.0%
ACTTGTATGGTAATTGGGGA+TGG - chr3.1:75220643-75220662 MS.gene049395:CDS 40.0%
AGTTCGAACTCATATACTCC+TGG + chr3.1:75220786-75220805 None:intergenic 40.0%
ATAAGTGGATGGCTGTCTTT+GGG - chr3.1:75221377-75221396 MS.gene049395:CDS 40.0%
ATATACCTGATGCATTTCCC+AGG + chr3.1:75222525-75222544 None:intergenic 40.0%
ATGTTCCACTGATGATTGCT+TGG + chr3.1:75222342-75222361 None:intergenic 40.0%
CACTATGGTACACATAAGGT+TGG - chr3.1:75221215-75221234 MS.gene049395:CDS 40.0%
CATATACAACACCAAGACTC+TGG + chr3.1:75220150-75220169 None:intergenic 40.0%
CATTGTGAAATAAGGGGGAT+AGG + chr3.1:75220700-75220719 None:intergenic 40.0%
CCAACCTCCAATAAAGAAAC+TGG + chr3.1:75223706-75223725 None:intergenic 40.0%
CCAGTTTCTTTATTGGAGGT+TGG - chr3.1:75223703-75223722 MS.gene049395:CDS 40.0%
CTATAAGATCGATGAGTAGC+AGG + chr3.1:75223115-75223134 None:intergenic 40.0%
CTGCTACTCATCGATCTTAT+AGG - chr3.1:75223113-75223132 MS.gene049395:CDS 40.0%
CTTCTGATTGTGGTTCTTCT+TGG - chr3.1:75220619-75220638 MS.gene049395:CDS 40.0%
CTTTACTTACTCCGGATTAC+TGG - chr3.1:75220831-75220850 MS.gene049395:CDS 40.0%
GAGTTCGATACCAATCGTAT+TGG + chr3.1:75223225-75223244 None:intergenic 40.0%
GATAGGATTCTTACCGGAAA+TGG + chr3.1:75220683-75220702 None:intergenic 40.0%
GCTGGTATTGCTTTCATTCT+TGG - chr3.1:75223562-75223581 MS.gene049395:CDS 40.0%
GGTTCTTCTTGGTACTTGTA+TGG - chr3.1:75220630-75220649 MS.gene049395:CDS 40.0%
GTCTCTAAATCCAATGGTGA+CGG + chr3.1:75222494-75222513 None:intergenic 40.0%
TAATCATTAGGAAGAGGGCA+AGG + chr3.1:75222808-75222827 None:intergenic 40.0%
TAGTGAGATCAGTGAACACA+AGG + chr3.1:75222955-75222974 None:intergenic 40.0%
TCTGTTAAGCTTTGCACACT+TGG + chr3.1:75223400-75223419 None:intergenic 40.0%
TGTTATTGAGATGGAACCGA+TGG - chr3.1:75223420-75223439 MS.gene049395:CDS 40.0%
TTACTTACTCCGGATTACTG+GGG - chr3.1:75220833-75220852 MS.gene049395:CDS 40.0%
TTCATTTGCAATGCCTTTCC+TGG - chr3.1:75222183-75222202 MS.gene049395:intron 40.0%
TTCTTTATTGGAGGTTGGCA+TGG - chr3.1:75223708-75223727 MS.gene049395:CDS 40.0%
TTGGAAGACTATTCTGCTAC+TGG - chr3.1:75220120-75220139 MS.gene049395:CDS 40.0%
! CTAGTGAAACCTTGTTGTGA+AGG + chr3.1:75222877-75222896 None:intergenic 40.0%
! GAAGCTATGTTTGCTGATCT+TGG - chr3.1:75221856-75221875 MS.gene049395:intron 40.0%
! GCAGATTGCATTCACCTTTT+TGG - chr3.1:75222003-75222022 MS.gene049395:intron 40.0%
! GTAGTTTTCTCAGCAGTATC+TGG - chr3.1:75220944-75220963 MS.gene049395:CDS 40.0%
! TGGGAATAGTATGAGCATTG+AGG - chr3.1:75223246-75223265 MS.gene049395:intron 40.0%
!! AGCTATTCTAGCTTCTGTTG+TGG - chr3.1:75222312-75222331 MS.gene049395:CDS 40.0%
!! AGTATGAGCATTGAGGATGA+TGG - chr3.1:75223253-75223272 MS.gene049395:intron 40.0%
!! AGTGTTCTGAAAACCAGGAA+AGG + chr3.1:75222199-75222218 None:intergenic 40.0%
!! CAGAGTCTTGGTGTTGTATA+TGG - chr3.1:75220148-75220167 MS.gene049395:CDS 40.0%
!! CCATAAGTGTTCTGAAAACC+AGG + chr3.1:75222204-75222223 None:intergenic 40.0%
!! CCTGGTTTTCAGAACACTTA+TGG - chr3.1:75222201-75222220 MS.gene049395:intron 40.0%
!! CTAGAATGGCTTCTAGCTTT+AGG - chr3.1:75222893-75222912 MS.gene049395:intron 40.0%
!! CTATTCTAGCTTCTGTTGTG+GGG - chr3.1:75222314-75222333 MS.gene049395:CDS 40.0%
!! GAAGTGTTGGGATAGTTCAA+AGG - chr3.1:75219983-75220002 MS.gene049395:CDS 40.0%
!! GCTATTCTAGCTTCTGTTGT+GGG - chr3.1:75222313-75222332 MS.gene049395:CDS 40.0%
AAACACCTGGGAAATGCATC+AGG - chr3.1:75222517-75222536 MS.gene049395:CDS 45.0%
AAGGGGGATAGGATTCTTAC+CGG + chr3.1:75220689-75220708 None:intergenic 45.0%
AGCAAACCTCACTCGTCTTT+CGG + chr3.1:75223455-75223474 None:intergenic 45.0%
AGTAGCCATGTCAGCACAAT+TGG + chr3.1:75221254-75221273 None:intergenic 45.0%
ATTCTTACCGGAAATGGCTG+GGG + chr3.1:75220677-75220696 None:intergenic 45.0%
CAACATCTTGATGAACGTCG+CGG + chr3.1:75223159-75223178 None:intergenic 45.0%
CACCAGTATGAAGCAAGTGA+TGG + chr3.1:75221177-75221196 None:intergenic 45.0%
CTACTGTGCATTAGCACACT+TGG - chr3.1:75221269-75221288 MS.gene049395:CDS 45.0%
CTATGTATTGCCGTCACCAT+TGG - chr3.1:75222481-75222500 MS.gene049395:CDS 45.0%
CTTTATGCTGCTCAAGAAGC+TGG - chr3.1:75223544-75223563 MS.gene049395:CDS 45.0%
GATAAGTGGATGGCTGTCTT+TGG - chr3.1:75221376-75221395 MS.gene049395:CDS 45.0%
GATTCTTACCGGAAATGGCT+GGG + chr3.1:75220678-75220697 None:intergenic 45.0%
GCACGTTGTTACCAACATCA+CGG + chr3.1:75222642-75222661 None:intergenic 45.0%
GCATACTGCTCTTCTGATTG+TGG - chr3.1:75220609-75220628 MS.gene049395:CDS 45.0%
GGTTCCCCCAGTTTCTTTAT+TGG - chr3.1:75223696-75223715 MS.gene049395:intron 45.0%
GTGGTGTTTCTTGGACATGA+TGG + chr3.1:75220981-75221000 None:intergenic 45.0%
GTGTTCACTGATCTCACTAC+CGG - chr3.1:75222956-75222975 MS.gene049395:intron 45.0%
TCATCAGCATGCTGTCTGTT+TGG + chr3.1:75220505-75220524 None:intergenic 45.0%
TCATGTATGTGTGGCTATGC+AGG - chr3.1:75220424-75220443 MS.gene049395:CDS 45.0%
TCCAAGCTTAGGAATTGCCA+GGG - chr3.1:75222916-75222935 MS.gene049395:intron 45.0%
TCCCATCACTTGCTTCATAC+TGG - chr3.1:75221172-75221191 MS.gene049395:CDS 45.0%
TCCCCCAGTTTCTTTATTGG+AGG - chr3.1:75223699-75223718 MS.gene049395:intron 45.0%
TGAAAGTGAGACAAGGTCTG+AGG - chr3.1:75223489-75223508 MS.gene049395:CDS 45.0%
TGAACACAAGGCCTATTCCA+GGG + chr3.1:75222943-75222962 None:intergenic 45.0%
! ACGATTGGTATCGAACTCGT+GGG - chr3.1:75223227-75223246 MS.gene049395:CDS 45.0%
! CTTACACTGGTGGTGTTTCT+TGG + chr3.1:75220990-75221009 None:intergenic 45.0%
! GCTGACTCTCATATCCTTGT+TGG + chr3.1:75223342-75223361 None:intergenic 45.0%
! TACGATTGGTATCGAACTCG+TGG - chr3.1:75223226-75223245 MS.gene049395:CDS 45.0%
! TGGCTGTTTCCCAAGAGTTA+AGG - chr3.1:75222390-75222409 MS.gene049395:CDS 45.0%
! TTGCTCCAATTGTGCTGACA+TGG - chr3.1:75221246-75221265 MS.gene049395:CDS 45.0%
!! AGAGCTGATGATAATGGGGA+AGG - chr3.1:75220325-75220344 MS.gene049395:CDS 45.0%
!! CTAGCTTTAGGTCCAAGCTT+AGG - chr3.1:75222905-75222924 MS.gene049395:intron 45.0%
!!! ACTAGCTTTTGCAGCCAACA+AGG - chr3.1:75223325-75223344 MS.gene049395:intron 45.0%
AATCCTACAGACACGCTACC+TGG + chr3.1:75223376-75223395 None:intergenic 50.0%
ACAAAGCGGGAGAAATTCGC+TGG + chr3.1:75222986-75223005 None:intergenic 50.0%
ACCCTGGCAATTCCTAAGCT+TGG + chr3.1:75222920-75222939 None:intergenic 50.0%
ACCTGTTCCTCATGTAACCC+CGG - chr3.1:75223060-75223079 MS.gene049395:CDS 50.0%
ACTAGGACACGGTGATATGC+AGG + chr3.1:75223019-75223038 None:intergenic 50.0%
AGCAGTGATGACCGTGATGT+TGG - chr3.1:75222628-75222647 MS.gene049395:intron 50.0%
AGCTACTATGTCTCCGTTCC+AGG - chr3.1:75222103-75222122 MS.gene049395:intron 50.0%
CAAAGCGGGAGAAATTCGCT+GGG + chr3.1:75222985-75223004 None:intergenic 50.0%
CTAGGACACGGTGATATGCA+GGG + chr3.1:75223018-75223037 None:intergenic 50.0%
GCAAACCTCACTCGTCTTTC+GGG + chr3.1:75223454-75223473 None:intergenic 50.0%
GGAACCTTAAGTGACACGTC+AGG + chr3.1:75223682-75223701 None:intergenic 50.0%
GGATTCTTACCGGAAATGGC+TGG + chr3.1:75220679-75220698 None:intergenic 50.0%
GTCCAAGCTTAGGAATTGCC+AGG - chr3.1:75222915-75222934 MS.gene049395:intron 50.0%
GTGAACACAAGGCCTATTCC+AGG + chr3.1:75222944-75222963 None:intergenic 50.0%
TCACTGACAAAGTTCCGCGA+GGG - chr3.1:75222764-75222783 MS.gene049395:intron 50.0%
TCATTAGGAAGAGGGCAAGG+AGG + chr3.1:75222805-75222824 None:intergenic 50.0%
TGTATGTGTGGCTATGCAGG+TGG - chr3.1:75220427-75220446 MS.gene049395:CDS 50.0%
TTAACCCTTCGATTTCCGGG+AGG + chr3.1:75220867-75220886 None:intergenic 50.0%
TTCACTGACAAAGTTCCGCG+AGG - chr3.1:75222763-75222782 MS.gene049395:intron 50.0%
! AGTGAGACAAGGTCTGAGGT+TGG - chr3.1:75223493-75223512 MS.gene049395:CDS 50.0%
! CCTACAAGGTACCTCTCTTC+CGG + chr3.1:75223082-75223101 None:intergenic 50.0%
! CTACAAGGTACCTCTCTTCC+GGG + chr3.1:75223081-75223100 None:intergenic 50.0%
! TACAAGGTACCTCTCTTCCG+GGG + chr3.1:75223080-75223099 None:intergenic 50.0%
! TTGAACCTGGGAGGAAGTGT+TGG - chr3.1:75219970-75219989 MS.gene049395:CDS 50.0%
!! CTACTGGCTTACCAGAGTCT+TGG - chr3.1:75220136-75220155 MS.gene049395:CDS 50.0%
!! CTCAGCAGTATCTGGTCTTG+AGG - chr3.1:75220952-75220971 MS.gene049395:CDS 50.0%
!! TGAACCTGGGAGGAAGTGTT+GGG - chr3.1:75219971-75219990 MS.gene049395:CDS 50.0%
!! TGAGGTTGGTGTGCAAATGC+AGG - chr3.1:75223507-75223526 MS.gene049395:CDS 50.0%
ACGGTGATATGCAGGGAGGT+TGG + chr3.1:75223011-75223030 None:intergenic 55.0%
AGGAAGAGGGCAAGGAGGAT+TGG + chr3.1:75222800-75222819 None:intergenic 55.0%
AGTCAGCAAAGTGTGCAGCC+AGG - chr3.1:75223355-75223374 MS.gene049395:intron 55.0%
AGTGGATGGCTGTCTTTGGG+TGG - chr3.1:75221380-75221399 MS.gene049395:CDS 55.0%
ATTGCCAGGGTCCCTGGAAT+AGG - chr3.1:75222929-75222948 MS.gene049395:intron 55.0%
CCTTCCTCCCGGAAATCGAA+GGG - chr3.1:75220860-75220879 MS.gene049395:CDS 55.0%
CCTTCGATTTCCGGGAGGAA+GGG + chr3.1:75220862-75220881 None:intergenic 55.0%
CGGTTTAGGTCGAATCGACC+AGG - chr3.1:75220765-75220784 MS.gene049395:CDS 55.0%
CTATCCCAACACTTCCTCCC+AGG + chr3.1:75219978-75219997 None:intergenic 55.0%
CTCATGTAACCCCGGAAGAG+AGG - chr3.1:75223068-75223087 MS.gene049395:CDS 55.0%
CTCTCTTCCGGGGTTACATG+AGG + chr3.1:75223070-75223089 None:intergenic 55.0%
CTTACTCCGGATTACTGGGG+CGG - chr3.1:75220836-75220855 MS.gene049395:CDS 55.0%
GATGAGTAGCAGGTCCTACG+CGG + chr3.1:75223105-75223124 None:intergenic 55.0%
GGAGAAATTCGCTGGGATGC+CGG + chr3.1:75222978-75222997 None:intergenic 55.0%
GGGAGCCAAGCAATCATCAG+TGG - chr3.1:75222334-75222353 MS.gene049395:CDS 55.0%
GTGCTTACCCCAGCCATTTC+CGG - chr3.1:75220667-75220686 MS.gene049395:CDS 55.0%
TCCGGGGTTACATGAGGAAC+AGG + chr3.1:75223064-75223083 None:intergenic 55.0%
TTAGGAATTGCCAGGGTCCC+TGG - chr3.1:75222923-75222942 MS.gene049395:intron 55.0%
! TGCAGAAAGCGTGAGATGGC+CGG - chr3.1:75222279-75222298 MS.gene049395:intron 55.0%
! TGGCTGCAGAAAGCGTGAGA+TGG - chr3.1:75222275-75222294 MS.gene049395:intron 55.0%
!! AGGGAGGTTGGTGACAAAGC+GGG + chr3.1:75222999-75223018 None:intergenic 55.0%
!! AGGGCCTGACGTGTCACTTA+AGG - chr3.1:75223675-75223694 MS.gene049395:intron 55.0%
!! CAGGGAGGTTGGTGACAAAG+CGG + chr3.1:75223000-75223019 None:intergenic 55.0%
!! CCGGAAGAGAGGTACCTTGT+AGG - chr3.1:75223079-75223098 MS.gene049395:CDS 55.0%
AAGGCCTATTCCAGGGACCC+TGG + chr3.1:75222936-75222955 None:intergenic 60.0%
AGGTACCTTGTAGGCCGCGT+AGG - chr3.1:75223088-75223107 MS.gene049395:CDS 60.0%
CAGCCAGGTAGCGTGTCTGT+AGG - chr3.1:75223370-75223389 MS.gene049395:CDS 60.0%
CCCTTCCTCCCGGAAATCGA+AGG - chr3.1:75220859-75220878 MS.gene049395:CDS 60.0%
CCCTTCGATTTCCGGGAGGA+AGG + chr3.1:75220863-75220882 None:intergenic 60.0%
CTTTCGGGCGCAGCATCCAT+CGG + chr3.1:75223439-75223458 None:intergenic 60.0%
GGACACGGTGATATGCAGGG+AGG + chr3.1:75223015-75223034 None:intergenic 60.0%
! TTGGTAGCCAAGCACCCTCG+CGG + chr3.1:75222781-75222800 None:intergenic 60.0%
!! CAAAGTTCCGCGAGGGTGCT+TGG - chr3.1:75222771-75222790 MS.gene049395:intron 60.0%
CAGGTCCTACGCGGCCTACA+AGG + chr3.1:75223096-75223115 None:intergenic 65.0%
CTGCGCCCGAAAGACGAGTG+AGG - chr3.1:75223446-75223465 MS.gene049395:CDS 65.0%
GAAGGGCCGCCCCAGTAATC+CGG + chr3.1:75220845-75220864 None:intergenic 65.0%
ACTGGGGCGGCCCTTCCTCC+CGG - chr3.1:75220849-75220868 MS.gene049395:CDS 75.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 75219963 75223744 75219963 ID=MS.gene049395
chr3.1 mRNA 75219963 75223744 75219963 ID=MS.gene049395.t1;Parent=MS.gene049395
chr3.1 exon 75223703 75223744 75223703 ID=MS.gene049395.t1.exon1;Parent=MS.gene049395.t1
chr3.1 CDS 75223703 75223744 75223703 ID=cds.MS.gene049395.t1;Parent=MS.gene049395.t1
chr3.1 exon 75223361 75223595 75223361 ID=MS.gene049395.t1.exon2;Parent=MS.gene049395.t1
chr3.1 CDS 75223361 75223595 75223361 ID=cds.MS.gene049395.t1;Parent=MS.gene049395.t1
chr3.1 exon 75223019 75223261 75223019 ID=MS.gene049395.t1.exon3;Parent=MS.gene049395.t1
chr3.1 CDS 75223019 75223261 75223019 ID=cds.MS.gene049395.t1;Parent=MS.gene049395.t1
chr3.1 exon 75222703 75222759 75222703 ID=MS.gene049395.t1.exon4;Parent=MS.gene049395.t1
chr3.1 CDS 75222703 75222759 75222703 ID=cds.MS.gene049395.t1;Parent=MS.gene049395.t1
chr3.1 exon 75222285 75222545 75222285 ID=MS.gene049395.t1.exon5;Parent=MS.gene049395.t1
chr3.1 CDS 75222285 75222545 75222285 ID=cds.MS.gene049395.t1;Parent=MS.gene049395.t1
chr3.1 exon 75221804 75221856 75221804 ID=MS.gene049395.t1.exon6;Parent=MS.gene049395.t1
chr3.1 CDS 75221804 75221856 75221804 ID=cds.MS.gene049395.t1;Parent=MS.gene049395.t1
chr3.1 exon 75221583 75221700 75221583 ID=MS.gene049395.t1.exon7;Parent=MS.gene049395.t1
chr3.1 CDS 75221583 75221700 75221583 ID=cds.MS.gene049395.t1;Parent=MS.gene049395.t1
chr3.1 exon 75221169 75221423 75221169 ID=MS.gene049395.t1.exon8;Parent=MS.gene049395.t1
chr3.1 CDS 75221169 75221423 75221169 ID=cds.MS.gene049395.t1;Parent=MS.gene049395.t1
chr3.1 exon 75219963 75221083 75219963 ID=MS.gene049395.t1.exon9;Parent=MS.gene049395.t1
chr3.1 CDS 75219963 75221083 75219963 ID=cds.MS.gene049395.t1;Parent=MS.gene049395.t1
Gene Sequence

>MS.gene049395

ATGGATCTTGAACCTGGGAGGAAGTGTTGGGATAGTTCAAAGGTTAGTGCATTTCACCTTTTCTAATGTGGGTTTTTATTGAGTTATGAATATTTGTGAAATGAAATGGATGGTAATTGAGTAAGTTGTTGATGAAATTTGATTTTCAGAGAGATTCTTGGAAGACTATTCTGCTACTGGCTTACCAGAGTCTTGGTGTTGTATATGGAGACTTGAGTATTTCTCCATTGTATGTTTTTACAAGCACTTTTGCTGAAGATATTGAACATTCAGAGACTAATGAAGAGATTTATGGCACACTTTCTTTTGTTTTCTGGACTCTTACATTGATTCCACTCTTCAAATATGTGTTTGTTGTTCTTAGAGCTGATGATAATGGGGAAGGTAATAAGGATTTGAATTTCAACAAATAAGAGAAACTAATATGATGATTTTCCTGTTTCTTTTGCTCATGATGATTTTCATGTATGTGTGGCTATGCAGGTGGTACTTTTGCTCTTTATTCATTGATTTGTAGGCATGCGAAAGTGAGTCTTTTACCAAACAGACAGCATGCTGATGAAGCACTTTCTTCATATAAGATGGAGGAGCCTCCAGAGAAAGAGTATTCTAAATTTAAGATACTGCTTGAGAAGTATAAGACTTTGCATACTGCTCTTCTGATTGTGGTTCTTCTTGGTACTTGTATGGTAATTGGGGATGGAGTGCTTACCCCAGCCATTTCCGGTAAGAATCCTATCCCCCTTATTTCACAATGTTTTACAAGTAACTAAGTGATTGAATTCAACTAGTTAATGAACTTCGGTTTAGGTCGAATCGACCAGGAGTATATGAGTTCGAACTGTAATTGGAACAGTCTATGTTCAGACTTTACTTACTCCGGATTACTGGGGCGGCCCTTCCTCCCGGAAATCGAAGGGTTAATAAAAAGAAAATTTTACAACTAATTTCATATCAATTATTGACTAGCTTTTCATTCATGTAGTTTTCTCAGCAGTATCTGGTCTTGAGGTATCCATCATGTCCAAGAAACACCACCAGTGTAAGTATATCACTTATAGCATTCTCAGATATTCCAATATAACATGTTAGCAGTGTCAAATTAAGTGAATATATTTCAATTAAATGACAATTAAGTTCACAAGATTTCTTCATTGTTCTGGTATTTGAATTTTGAACCTATTGATTTTTGTTTGCAGATGCTGTGATTCCCATCACTTGCTTCATACTGGTGTGTTTGTTTGCACTTCAACACTATGGTACACATAAGGTTGGGTTCTTTTTTGCTCCAATTGTGCTGACATGGCTACTGTGCATTAGCACACTTGGCGTATATAATATATTCAAATGGAATCCGCATGTATATAAAGCTCTTTCACCGTATTATATGTTCAAGTTCTTGAAAAAGACAAGGATAAGTGGATGGCTGTCTTTGGGTGGAATATTACTTTGTATAACAGGTAAAGAGAAGAAATTTCATACATTTATATTGTAGAATAATGTTTTGTGCTATTCTCCTACTTATTTTTTAAATCCAAAACCTATATCTATCTATAAATATTCATATCTTGTACTGTTGTAAGAGTAAGACGGAATACTATTTTATCCGAGGCATCTTTTTAGAAACCTCAGAGTCAAAAGTACTATGATTTAATTAAGACATGGAATAAGTTCTCTGGATATATACTTGAACAAATTCTGGACTGCTCCTTTATCTATCATTATTTCCCTTAAAGTATCAAATTTAGTATACTTTCACTAAATCAAAGCAAGATATTATGCCCTCAAATCAATAGATTTGAGCTTTCACATGAAAGCATTGTAAAACTTTTGTAGTAAATCTATCTTACTTTATGACATACTCCTTATGTATTGACTTTGTGTGCAGGCTCAGAAGCTATGTTTGCTGATCTTGGCCATTTCAATTATATGGCCATTCAGGTTGGTTAAAATATTTACTCATTTTCTGTTTGCTATTTATTATGGTATATTGTTATACTCTTATAGACCTGGGGAAAATGTCTTTACAATTTGTCATGTGCAGATTGCATTCACCTTTTTGGTATATCCTGCACTTATATTGGCATATATGGGTCAAGCTGCGTACTTGTCACAACATCACAATGCTGATCTACGAATCAGCTACTATGTCTCCGTTCCAGGTATTCATTGCTGTATATCACTTTTTATAGGAAAATACTAACTAGTAGTATAAATGAATTCATTTGCAATGCCTTTCCTGGTTTTCAGAACACTTATGGTTCTTATTACCTGGTACAATAGCATATTATAGAAAACATTATGCAAAATTTTGGCTGCAGAAAGCGTGAGATGGCCGGTGCTTATCTTAGCTATTCTAGCTTCTGTTGTGGGGAGCCAAGCAATCATCAGTGGAACATTTTCGATCATAAATCAGAGTCAATCTCTTGGCTGTTTCCCAAGAGTTAAGGTTGTTCATACATCAGAAAAGATACATGGTCAGGTTTACATCCCAGAAATTAATTGGATGCTCATGATTCTATGTATTGCCGTCACCATTGGATTTAGAGACACAAAACACCTGGGAAATGCATCAGGTATATTGCAATTTATGCGTGATTAACTAGATAAAACACAGTGGTACTTATAATGTGACATATAATCGACAATGTTTTGATGCAGGGTTAGCAGTGATGACCGTGATGTTGGTAACAACGTGCCTAACTTCTTTGGTGATAGTAGTTTGTTGGCATAAACCACCAATTTTAGCTCTTTGTTTCCTATTGTTTTTTGGATCTGTCGAACTGCTATACTTTTCAGCTTCACTGACAAAGTTCCGCGAGGGTGCTTGGCTACCAATCCTCCTTGCCCTCTTCCTAATGATTATAATGCTCATTTGGCACTACGCAACAATCAAGAAATATGAATATGACCTTCACAACAAGGTTTCACTAGAATGGCTTCTAGCTTTAGGTCCAAGCTTAGGAATTGCCAGGGTCCCTGGAATAGGCCTTGTGTTCACTGATCTCACTACCGGCATCCCAGCGAATTTCTCCCGCTTTGTCACCAACCTCCCTGCATATCACCGTGTCCTAGTTTTTGTATGTGTGAAATCAGTACCTGTTCCTCATGTAACCCCGGAAGAGAGGTACCTTGTAGGCCGCGTAGGACCTGCTACTCATCGATCTTATAGGTGTATAGTAAGATATGGATACCGCGACGTTCATCAAGATGTTGATTCCTTTGAAACCGAACTAGTAAAAAAGTTGTCTGATTTTATCCAATACGATTGGTATCGAACTCGTGGGAATAGTATGAGCATTGAGGATGATGGTTCACACTCGAACGAATCATCTAGTTACAGATTAACTGTGATTGGAACAACTAGCTTTTGCAGCCAACAAGGATATGAGAGTCAGCAAAGTGTGCAGCCAGGTAGCGTGTCTGTAGGATTTCCAAGTGTGCAAAGCTTAACAGATGTTATTGAGATGGAACCGATGGATGCTGCGCCCGAAAGACGAGTGAGGTTTGCTGTTGATGATGATCATGAAAGTGAGACAAGGTCTGAGGTTGGTGTGCAAATGCAGGAAGAGCTTGAAGATCTTTATGCTGCTCAAGAAGCTGGTATTGCTTTCATTCTTGGACATTCTTATATGAAAACAAAGCAAGGTTCATCATTCTTGAAGAAGCTGGCACTTAACTATGGATATAATTTCTTGAGAAGGAATTGTAGAGGGCCTGACGTGTCACTTAAGGTTCCCCCAGTTTCTTTATTGGAGGTTGGCATGGTTTATATTGTGTAG
Protein sequence

>MS.gene049395.t1

MDLEPGRKCWDSSKRDSWKTILLLAYQSLGVVYGDLSISPLYVFTSTFAEDIEHSETNEEIYGTLSFVFWTLTLIPLFKYVFVVLRADDNGEGGTFALYSLICRHAKVSLLPNRQHADEALSSYKMEEPPEKEYSKFKILLEKYKTLHTALLIVVLLGTCMVIGDGVLTPAISVFSAVSGLEVSIMSKKHHQYAVIPITCFILVCLFALQHYGTHKVGFFFAPIVLTWLLCISTLGVYNIFKWNPHVYKALSPYYMFKFLKKTRISGWLSLGGILLCITGSEAMFADLGHFNYMAIQIAFTFLVYPALILAYMGQAAYLSQHHNADLRISYYVSVPESVRWPVLILAILASVVGSQAIISGTFSIINQSQSLGCFPRVKVVHTSEKIHGQVYIPEINWMLMILCIAVTIGFRDTKHLGNASGLAVMTVMLVTTCLTSLVIVVCWHKPPILALCFLLFFGSVELLYFSASLTKFREGAWLPILLALFLMIIMLIWHYATIKKYEYDLHNKVSLEWLLALGPSLGIARVPGIGLVFTDLTTGIPANFSRFVTNLPAYHRVLVFVCVKSVPVPHVTPEERYLVGRVGPATHRSYRCIVRYGYRDVHQDVDSFETELVKKLSDFIQYDWYRTRGNSMSIEDDGSHSNESSSYRLTVIGTTSFCSQQGYESQQSVQPGSVSVGFPSVQSLTDVIEMEPMDAAPERRVRFAVDDDHESETRSEVGVQMQEELEDLYAAQEAGIAFILGHSYMKTKQGSSFLKKLALNYGYNFLRRNCRGPDVSLKVPPVSLLEVGMVYIV