Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017030.t1 | XP_024639199.1 | 97.5 | 242 | 5 | 1 | 1 | 242 | 1 | 241 | 2.70E-128 | 468 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017030.t1 | Q9SS37 | 56.3 | 231 | 97 | 3 | 10 | 240 | 14 | 240 | 8.8e-72 | 271.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017030.t1 | G7KD07 | 97.5 | 242 | 5 | 1 | 1 | 242 | 49 | 289 | 1.9e-128 | 468.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene023287 | MS.gene017030 | PPI |
| MS.gene017030 | MS.gene028158 | PPI |
| MS.gene028160 | MS.gene017030 | PPI |
| MS.gene017030 | MS.gene34943 | PPI |
| MS.gene017030 | MS.gene08330 | PPI |
| MS.gene017030 | MS.gene35007 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017030.t1 | MTR_5g090340 | 97.521 | 242 | 5 | 1 | 1 | 242 | 49 | 289 | 5.14e-175 | 483 |
| MS.gene017030.t1 | MTR_5g090340 | 97.521 | 242 | 5 | 1 | 1 | 242 | 46 | 286 | 7.98e-175 | 482 |
| MS.gene017030.t1 | MTR_3g449880 | 65.652 | 230 | 77 | 1 | 1 | 230 | 1 | 228 | 4.43e-112 | 322 |
| MS.gene017030.t1 | MTR_3g449880 | 68.023 | 172 | 53 | 1 | 59 | 230 | 37 | 206 | 9.45e-85 | 251 |
| MS.gene017030.t1 | MTR_8g099060 | 47.418 | 213 | 107 | 2 | 30 | 239 | 42 | 252 | 8.68e-69 | 213 |
| MS.gene017030.t1 | MTR_8g028450 | 44.286 | 210 | 111 | 2 | 34 | 239 | 53 | 260 | 3.94e-62 | 196 |
| MS.gene017030.t1 | MTR_1g099500 | 40.306 | 196 | 115 | 2 | 42 | 237 | 50 | 243 | 3.44e-54 | 175 |
| MS.gene017030.t1 | MTR_1g109630 | 36.181 | 199 | 115 | 4 | 43 | 239 | 10 | 198 | 2.92e-40 | 137 |
| MS.gene017030.t1 | MTR_3g062910 | 32.979 | 188 | 124 | 1 | 41 | 228 | 45 | 230 | 1.05e-33 | 122 |
| MS.gene017030.t1 | MTR_4g014700 | 33.163 | 196 | 129 | 1 | 41 | 236 | 5 | 198 | 1.53e-29 | 110 |
| MS.gene017030.t1 | MTR_5g090440 | 88.679 | 53 | 6 | 0 | 191 | 243 | 9 | 61 | 1.95e-27 | 100 |
| MS.gene017030.t1 | MTR_6g012460 | 31.111 | 180 | 122 | 1 | 60 | 239 | 14 | 191 | 6.66e-27 | 103 |
| MS.gene017030.t1 | MTR_5g018250 | 30.939 | 181 | 123 | 1 | 55 | 235 | 29 | 207 | 1.17e-23 | 95.5 |
| MS.gene017030.t1 | MTR_1g107445 | 33.511 | 188 | 123 | 1 | 50 | 237 | 9 | 194 | 1.48e-23 | 94.7 |
| MS.gene017030.t1 | MTR_5g018190 | 33.108 | 148 | 97 | 1 | 63 | 210 | 284 | 429 | 1.62e-18 | 84.3 |
| MS.gene017030.t1 | MTR_5g018080 | 33.566 | 143 | 93 | 1 | 59 | 201 | 15 | 155 | 1.32e-17 | 77.8 |
| MS.gene017030.t1 | MTR_6g012460 | 33.835 | 133 | 86 | 1 | 60 | 192 | 14 | 144 | 4.33e-17 | 77.8 |
| MS.gene017030.t1 | MTR_5g018110 | 33.333 | 144 | 94 | 1 | 62 | 205 | 344 | 485 | 3.38e-15 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017030.t1 | AT3G10260 | 54.321 | 243 | 105 | 3 | 1 | 240 | 1 | 240 | 7.26e-97 | 283 |
| MS.gene017030.t1 | AT3G10260 | 54.321 | 243 | 105 | 3 | 1 | 240 | 1 | 240 | 7.26e-97 | 283 |
| MS.gene017030.t1 | AT3G10260 | 54.321 | 243 | 105 | 3 | 1 | 240 | 21 | 260 | 1.27e-96 | 283 |
| MS.gene017030.t1 | AT2G46170 | 45.098 | 204 | 110 | 1 | 34 | 237 | 43 | 244 | 7.75e-66 | 205 |
| MS.gene017030.t1 | AT3G61560 | 44.118 | 204 | 112 | 1 | 34 | 237 | 43 | 244 | 2.07e-64 | 201 |
| MS.gene017030.t1 | AT3G61560 | 44.118 | 204 | 112 | 1 | 34 | 237 | 43 | 244 | 2.07e-64 | 201 |
| MS.gene017030.t1 | AT1G64090 | 40.758 | 211 | 119 | 2 | 33 | 239 | 38 | 246 | 1.33e-58 | 186 |
| MS.gene017030.t1 | AT4G23630 | 39.899 | 198 | 117 | 1 | 42 | 239 | 72 | 267 | 5.22e-58 | 186 |
| MS.gene017030.t1 | AT4G23630 | 39.899 | 198 | 117 | 1 | 42 | 239 | 72 | 267 | 5.22e-58 | 186 |
| MS.gene017030.t1 | AT4G11220 | 37.374 | 198 | 122 | 1 | 42 | 239 | 68 | 263 | 2.43e-57 | 184 |
| MS.gene017030.t1 | AT5G41600 | 41.089 | 202 | 113 | 3 | 42 | 239 | 51 | 250 | 8.70e-56 | 179 |
| MS.gene017030.t1 | AT1G64090 | 38.222 | 225 | 117 | 3 | 35 | 239 | 40 | 262 | 1.55e-54 | 176 |
| MS.gene017030.t1 | AT3G18260 | 38.191 | 199 | 121 | 1 | 41 | 239 | 21 | 217 | 5.64e-50 | 163 |
| MS.gene017030.t1 | AT4G01230 | 38.916 | 203 | 119 | 1 | 35 | 237 | 46 | 243 | 7.38e-50 | 164 |
| MS.gene017030.t1 | AT3G61560 | 45.570 | 158 | 84 | 1 | 34 | 191 | 43 | 198 | 1.27e-47 | 156 |
| MS.gene017030.t1 | AT4G01230 | 37.931 | 203 | 119 | 2 | 35 | 237 | 46 | 241 | 1.76e-46 | 155 |
| MS.gene017030.t1 | AT2G46170 | 41.912 | 136 | 77 | 1 | 34 | 169 | 43 | 176 | 1.05e-35 | 125 |
| MS.gene017030.t1 | AT3G10915 | 30.348 | 201 | 138 | 1 | 37 | 237 | 19 | 217 | 1.11e-34 | 124 |
| MS.gene017030.t1 | AT3G10915 | 29.808 | 208 | 144 | 1 | 29 | 236 | 36 | 241 | 1.57e-34 | 124 |
| MS.gene017030.t1 | AT3G10915 | 30.198 | 202 | 138 | 2 | 37 | 237 | 19 | 218 | 6.49e-33 | 119 |
| MS.gene017030.t1 | AT2G15280 | 33.158 | 190 | 125 | 1 | 47 | 236 | 2 | 189 | 1.35e-32 | 118 |
| MS.gene017030.t1 | AT1G68230 | 33.161 | 193 | 121 | 3 | 50 | 240 | 22 | 208 | 4.82e-28 | 106 |
| MS.gene017030.t1 | AT3G10915 | 27.232 | 224 | 138 | 3 | 37 | 237 | 19 | 240 | 1.89e-27 | 105 |
| MS.gene017030.t1 | AT3G19460 | 31.073 | 177 | 120 | 1 | 51 | 227 | 14 | 188 | 1.03e-26 | 102 |
| MS.gene017030.t1 | AT3G19460 | 31.073 | 177 | 120 | 1 | 51 | 227 | 14 | 188 | 1.03e-26 | 102 |
| MS.gene017030.t1 | AT3G19460 | 31.073 | 177 | 120 | 1 | 51 | 227 | 14 | 188 | 1.03e-26 | 102 |
| MS.gene017030.t1 | AT3G10915 | 28.415 | 183 | 129 | 1 | 54 | 236 | 4 | 184 | 1.11e-26 | 102 |
| MS.gene017030.t1 | AT3G10915 | 28.652 | 178 | 125 | 1 | 59 | 236 | 8 | 183 | 1.55e-26 | 102 |
| MS.gene017030.t1 | AT3G54120 | 28.708 | 209 | 142 | 3 | 36 | 243 | 1 | 203 | 7.28e-22 | 90.1 |
| MS.gene017030.t1 | AT3G19460 | 27.103 | 214 | 114 | 5 | 51 | 227 | 14 | 222 | 3.29e-20 | 86.3 |
| MS.gene017030.t1 | AT3G19460 | 27.103 | 214 | 114 | 5 | 51 | 227 | 14 | 222 | 3.29e-20 | 86.3 |
| MS.gene017030.t1 | AT1G68230 | 33.793 | 145 | 88 | 3 | 50 | 192 | 22 | 160 | 5.02e-17 | 76.3 |
| MS.gene017030.t1 | AT3G10915 | 31.200 | 125 | 84 | 1 | 42 | 166 | 24 | 146 | 8.89e-17 | 75.5 |
| MS.gene017030.t1 | AT2G23640 | 24.713 | 174 | 129 | 1 | 61 | 234 | 18 | 189 | 6.75e-15 | 71.6 |
| MS.gene017030.t1 | AT2G15280 | 23.684 | 190 | 104 | 2 | 47 | 236 | 2 | 150 | 1.20e-11 | 61.6 |
Find 61 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAGGTTGTAGTATGCTTA+TGG | 0.271495 | 5.1:-71921873 | MS.gene017030:intron |
| TCATGTCTGTACAGTTTCTT+TGG | 0.274156 | 5.1:-71922568 | MS.gene017030:CDS |
| CTGAGGTTAACCGTGGTTTA+AGG | 0.278401 | 5.1:-71922332 | MS.gene017030:CDS |
| TATCCAAGCTTCTTTCCTTT+GGG | 0.285834 | 5.1:+71921238 | None:intergenic |
| TATAATTAAGCCATTCAAAA+AGG | 0.291332 | 5.1:+71922627 | None:intergenic |
| CAGTATAGGAAGGTGGATTC+TGG | 0.314712 | 5.1:-71921277 | MS.gene017030:CDS |
| CTATCCAAGCTTCTTTCCTT+TGG | 0.317711 | 5.1:+71921237 | None:intergenic |
| TATTAACAAAGAAATCTTTC+GGG | 0.323201 | 5.1:+71922373 | None:intergenic |
| CAGAATCCACCTTCCTATAC+TGG | 0.327594 | 5.1:+71921278 | None:intergenic |
| GTCCAAACAGTTTATTGAAC+TGG | 0.330990 | 5.1:+71922859 | None:intergenic |
| TAACCGCTGCAACAACTATA+TGG | 0.340621 | 5.1:-71922652 | MS.gene017030:CDS |
| ATATTAACAAAGAAATCTTT+CGG | 0.374090 | 5.1:+71922372 | None:intergenic |
| CTGGTGCTGTGATTGGGAAC+TGG | 0.386885 | 5.1:-71921849 | MS.gene017030:CDS |
| ATGCTTCCGGCGTGTTTAGC+AGG | 0.400253 | 5.1:-71922541 | MS.gene017030:intron |
| TCCCAGTTCAATAAACTGTT+TGG | 0.402640 | 5.1:-71922861 | MS.gene017030:CDS |
| TTATGGGCTGGTGCTGTGAT+TGG | 0.407728 | 5.1:-71921856 | MS.gene017030:CDS |
| TTTCTTTGGACAAATGCTTC+CGG | 0.425537 | 5.1:-71922554 | MS.gene017030:CDS |
| GCCATCAAAAGCTCCTCGTT+TGG | 0.430625 | 5.1:-71922400 | MS.gene017030:CDS |
| AGTTGTTGCAGCGGTTAAAA+CGG | 0.447463 | 5.1:+71922658 | None:intergenic |
| GCAGGTTGTAGTATGCTTAT+GGG | 0.447620 | 5.1:-71921872 | MS.gene017030:intron |
| TCATACCTTTCGTAGAGAAC+CGG | 0.450625 | 5.1:+71921349 | None:intergenic |
| TATGGGCTGGTGCTGTGATT+GGG | 0.451379 | 5.1:-71921855 | MS.gene017030:CDS |
| ATCCAAGCTTCTTTCCTTTG+GGG | 0.455010 | 5.1:+71921239 | None:intergenic |
| GAGCTAGGCATAGAAGTGAT+AGG | 0.455942 | 5.1:+71922600 | None:intergenic |
| CTTCAAAATGTTTCATGTGG+AGG | 0.472512 | 5.1:-71922306 | MS.gene017030:CDS |
| ATCCCCAAAGGAAAGAAGCT+TGG | 0.496516 | 5.1:-71921241 | MS.gene017030:CDS |
| ATCAGATGCAAAACCAGTAT+AGG | 0.499744 | 5.1:-71921291 | MS.gene017030:CDS |
| CTTGGCGAGAGGCAAAAGTC+TGG | 0.502330 | 5.1:-71922921 | MS.gene017030:CDS |
| TTTGAAGAAACCTTAAACCA+CGG | 0.502721 | 5.1:+71922322 | None:intergenic |
| AGTTTGCCTTCACTTCTACA+TGG | 0.505250 | 5.1:+71922892 | None:intergenic |
| TGTTGCTGCACATACACTCC+CGG | 0.528499 | 5.1:-71921368 | MS.gene017030:CDS |
| TCCAAACAGTTTATTGAACT+GGG | 0.530900 | 5.1:+71922860 | None:intergenic |
| GTTAATATTGCAACTGCGGT+TGG | 0.530904 | 5.1:-71922357 | MS.gene017030:CDS |
| GATTGATAACTTCGTGTACA+AGG | 0.536766 | 5.1:-71921320 | MS.gene017030:CDS |
| AACACCCTCGTGGAAACACT+TGG | 0.537056 | 5.1:-71922939 | MS.gene017030:CDS |
| TTTCTTCAAAATGTTTCATG+TGG | 0.542392 | 5.1:-71922309 | MS.gene017030:CDS |
| TTTCTTTCTGTAGTGACAGG+AGG | 0.553917 | 5.1:-71922422 | MS.gene017030:intron |
| CCACCTAAAATATGGTGCAC+AGG | 0.562386 | 5.1:+71922828 | None:intergenic |
| GTTGTAGTATGCTTATGGGC+TGG | 0.564353 | 5.1:-71921868 | MS.gene017030:CDS |
| CATACCTTTCGTAGAGAACC+GGG | 0.571222 | 5.1:+71921350 | None:intergenic |
| TAGCTGCTGATGTCATGTTG+TGG | 0.573484 | 5.1:-71922703 | MS.gene017030:CDS |
| TGCAACTGCGGTTGGTACTG+AGG | 0.575677 | 5.1:-71922349 | MS.gene017030:CDS |
| CTTTGTTAATATTGCAACTG+CGG | 0.576367 | 5.1:-71922361 | MS.gene017030:CDS |
| TTCATTCCATGTAGAAGTGA+AGG | 0.576828 | 5.1:-71922898 | MS.gene017030:CDS |
| CACTCCCGGTTCTCTACGAA+AGG | 0.578629 | 5.1:-71921354 | MS.gene017030:CDS |
| CTGCTGATGTCATGTTGTGG+AGG | 0.578920 | 5.1:-71922700 | MS.gene017030:CDS |
| CTCGCCAAGTGTTTCCACGA+GGG | 0.597506 | 5.1:+71922935 | None:intergenic |
| TGCTGATGTCATGTTGTGGA+GGG | 0.606274 | 5.1:-71922699 | MS.gene017030:CDS |
| ACATGACAAGAACAAGAGCT+AGG | 0.612406 | 5.1:+71922585 | None:intergenic |
| GATGCAAAACCAGTATAGGA+AGG | 0.625408 | 5.1:-71921287 | MS.gene017030:CDS |
| GCAAAACCAGTATAGGAAGG+TGG | 0.628367 | 5.1:-71921284 | MS.gene017030:CDS |
| GAGCCATATAGTTGTTGCAG+CGG | 0.636566 | 5.1:+71922649 | None:intergenic |
| TCGTGGAAACACTTGGCGAG+AGG | 0.645330 | 5.1:-71922932 | MS.gene017030:CDS |
| TTGCTTAGCAAAATCCCCAA+AGG | 0.645417 | 5.1:-71921253 | MS.gene017030:CDS |
| AAAGCTTCTGAACACCCTCG+TGG | 0.647335 | 5.1:-71922949 | MS.gene017030:CDS |
| GTTGGTACTGAGGTTAACCG+TGG | 0.658377 | 5.1:-71922339 | MS.gene017030:CDS |
| GAATAACCTGCTAAACACGC+CGG | 0.674294 | 5.1:+71922535 | None:intergenic |
| TCTCGCCAAGTGTTTCCACG+AGG | 0.690672 | 5.1:+71922934 | None:intergenic |
| AAACAGTTTATTGAACTGGG+AGG | 0.721336 | 5.1:+71922863 | None:intergenic |
| TCTTTCGGGAGAACCAAACG+AGG | 0.723179 | 5.1:+71922387 | None:intergenic |
| GAGGGACAAGAAGATCTCTG+CGG | 0.781257 | 5.1:-71922681 | MS.gene017030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATTTAGATAAAAATAAAAT+AGG | + | chr5.1:71921732-71921751 | None:intergenic | 10.0% |
| !!! | TTTATTTTTATCTAAATGTA+CGG | - | chr5.1:71921734-71921753 | MS.gene017030:intron | 10.0% |
| !! | ACACATGAATTAAAAAAAAT+TGG | + | chr5.1:71922218-71922237 | None:intergenic | 15.0% |
| !! | ATATTAACAAAGAAATCTTT+CGG | + | chr5.1:71921840-71921859 | None:intergenic | 15.0% |
| !!! | TATGATTTTATATTTAGAGA+CGG | - | chr5.1:71922247-71922266 | MS.gene017030:intron | 15.0% |
| !!! | TTTTTTAATTCATGTGTTTT+AGG | - | chr5.1:71922221-71922240 | MS.gene017030:intron | 15.0% |
| !! | CAACATAATTAGAGATATAA+TGG | + | chr5.1:71922119-71922138 | None:intergenic | 20.0% |
| !! | GATTATAAATGACAAAACAA+AGG | + | chr5.1:71921976-71921995 | None:intergenic | 20.0% |
| !! | TATAATTAAGCCATTCAAAA+AGG | + | chr5.1:71921585-71921604 | None:intergenic | 20.0% |
| !! | TATTAACAAAGAAATCTTTC+GGG | + | chr5.1:71921839-71921858 | None:intergenic | 20.0% |
| !!! | ATGTAAGTTGAAAATTTGAA+AGG | + | chr5.1:71922082-71922101 | None:intergenic | 20.0% |
| !!! | GTATGTTTTAAGCATAAATA+TGG | + | chr5.1:71921998-71922017 | None:intergenic | 20.0% |
| !!! | GTTAAAACTTTGTTATGTTA+CGG | - | chr5.1:71922759-71922778 | MS.gene017030:intron | 20.0% |
| !!! | TACTTAGGGATAATATTTTT+AGG | + | chr5.1:71922517-71922536 | None:intergenic | 20.0% |
| !!! | TGTAAGTTGAAAATTTGAAA+GGG | + | chr5.1:71922081-71922100 | None:intergenic | 20.0% |
| !!! | TTTCATTGTCCTTTTTTAAA+AGG | - | chr5.1:71922054-71922073 | MS.gene017030:intron | 20.0% |
| ! | ACACATTGTATCAACAAAAA+AGG | + | chr5.1:71922429-71922448 | None:intergenic | 25.0% |
| ! | ACTTATTAGAGAAAACATCA+TGG | + | chr5.1:71922455-71922474 | None:intergenic | 25.0% |
| ! | CTGTTGAAATAGTATTTCAT+CGG | - | chr5.1:71922552-71922571 | MS.gene017030:CDS | 25.0% |
| ! | TCCTGTAAAATCTATCATAT+TGG | - | chr5.1:71921439-71921458 | MS.gene017030:intron | 25.0% |
| ! | TTCAACTATTCACTTACTTA+GGG | + | chr5.1:71922531-71922550 | None:intergenic | 25.0% |
| ! | TTGAAAAACAGAAACATTGA+CGG | - | chr5.1:71922288-71922307 | MS.gene017030:CDS | 25.0% |
| ! | TTTCAACTATTCACTTACTT+AGG | + | chr5.1:71922532-71922551 | None:intergenic | 25.0% |
| ! | TTTCTTCAAAATGTTTCATG+TGG | - | chr5.1:71921900-71921919 | MS.gene017030:intron | 25.0% |
| !! | GTAAGTTGAAAATTTGAAAG+GGG | + | chr5.1:71922080-71922099 | None:intergenic | 25.0% |
| !! | TGATGTTTTCTCTAATAAGT+TGG | - | chr5.1:71922455-71922474 | MS.gene017030:intron | 25.0% |
| !! | TTTTTGTTGATACAATGTGT+TGG | - | chr5.1:71922429-71922448 | MS.gene017030:intron | 25.0% |
| !!! | CTTTGTTTTGTTATGTCTTA+AGG | - | chr5.1:71922815-71922834 | MS.gene017030:intron | 25.0% |
| !!! | TTTTTTACTGTCGTGTATAT+CGG | - | chr5.1:71922389-71922408 | MS.gene017030:CDS | 25.0% |
| CAGACAAAAGAAGAAATTCA+AGG | + | chr5.1:71921706-71921725 | None:intergenic | 30.0% | |
| CATTGTATCAACAAAAAAGG+AGG | + | chr5.1:71922426-71922445 | None:intergenic | 30.0% | |
| CTTTGTTAATATTGCAACTG+CGG | - | chr5.1:71921848-71921867 | MS.gene017030:CDS | 30.0% | |
| GACAATGAAAAATCTCAAGA+GGG | + | chr5.1:71922044-71922063 | None:intergenic | 30.0% | |
| TCAAGAATTCTCTCTTTGTT+TGG | + | chr5.1:71922598-71922617 | None:intergenic | 30.0% | |
| TCCAAACAGTTTATTGAACT+GGG | + | chr5.1:71921352-71921371 | None:intergenic | 30.0% | |
| TTTGAAGAAACCTTAAACCA+CGG | + | chr5.1:71921890-71921909 | None:intergenic | 30.0% | |
| ! | ATTTTCCACCACCTAAAATA+TGG | + | chr5.1:71921392-71921411 | None:intergenic | 30.0% |
| ! | GATTTTATATTTAGAGACGG+AGG | - | chr5.1:71922250-71922269 | MS.gene017030:intron | 30.0% |
| ! | GCCAATATGATAGATTTTAC+AGG | + | chr5.1:71921443-71921462 | None:intergenic | 30.0% |
| AAACAGTTTATTGAACTGGG+AGG | + | chr5.1:71921349-71921368 | None:intergenic | 35.0% | |
| AACAGCAAACTCGGTTAATT+GGG | + | chr5.1:71922664-71922683 | None:intergenic | 35.0% | |
| ATCAGATGCAAAACCAGTAT+AGG | - | chr5.1:71922918-71922937 | MS.gene017030:CDS | 35.0% | |
| ATCATGCTTAAAACATCTGC+AGG | - | chr5.1:71922319-71922338 | MS.gene017030:CDS | 35.0% | |
| CTTCAAAATGTTTCATGTGG+AGG | - | chr5.1:71921903-71921922 | MS.gene017030:intron | 35.0% | |
| GGACAATGAAAAATCTCAAG+AGG | + | chr5.1:71922045-71922064 | None:intergenic | 35.0% | |
| GTCCAAACAGTTTATTGAAC+TGG | + | chr5.1:71921353-71921372 | None:intergenic | 35.0% | |
| TAACAGCAAACTCGGTTAAT+TGG | + | chr5.1:71922665-71922684 | None:intergenic | 35.0% | |
| TATCCAAGCTTCTTTCCTTT+GGG | + | chr5.1:71922974-71922993 | None:intergenic | 35.0% | |
| TCATGTCTGTACAGTTTCTT+TGG | - | chr5.1:71921641-71921660 | MS.gene017030:intron | 35.0% | |
| TCCCAGTTCAATAAACTGTT+TGG | - | chr5.1:71921348-71921367 | MS.gene017030:CDS | 35.0% | |
| TTACCACGAAACACTTAACA+AGG | + | chr5.1:71922727-71922746 | None:intergenic | 35.0% | |
| TTCATTCCATGTAGAAGTGA+AGG | - | chr5.1:71921311-71921330 | MS.gene017030:CDS | 35.0% | |
| TTTATATTTAGAGACGGAGG+TGG | - | chr5.1:71922253-71922272 | MS.gene017030:intron | 35.0% | |
| TTTCTTTGGACAAATGCTTC+CGG | - | chr5.1:71921655-71921674 | MS.gene017030:intron | 35.0% | |
| ! | AAACCTGTGCACCATATTTT+AGG | - | chr5.1:71921378-71921397 | MS.gene017030:intron | 35.0% |
| ! | CTATATGGCTCCTTTTTGAA+TGG | - | chr5.1:71921572-71921591 | MS.gene017030:intron | 35.0% |
| ! | GATTGATAACTTCGTGTACA+AGG | - | chr5.1:71922889-71922908 | MS.gene017030:CDS | 35.0% |
| ! | TTGTTTCTTTCTGTAGTGAC+AGG | - | chr5.1:71921784-71921803 | MS.gene017030:intron | 35.0% |
| !! | TGAAAGGGGCCTTTTAAAAA+AGG | + | chr5.1:71922066-71922085 | None:intergenic | 35.0% |
| ACATGACAAGAACAAGAGCT+AGG | + | chr5.1:71921627-71921646 | None:intergenic | 40.0% | |
| AGTTGTTGCAGCGGTTAAAA+CGG | + | chr5.1:71921554-71921573 | None:intergenic | 40.0% | |
| AGTTTGCCTTCACTTCTACA+TGG | + | chr5.1:71921320-71921339 | None:intergenic | 40.0% | |
| ATCCAAGCTTCTTTCCTTTG+GGG | + | chr5.1:71922973-71922992 | None:intergenic | 40.0% | |
| CTATCCAAGCTTCTTTCCTT+TGG | + | chr5.1:71922975-71922994 | None:intergenic | 40.0% | |
| CTCAAGAGGGTCCTATATTT+GGG | + | chr5.1:71922031-71922050 | None:intergenic | 40.0% | |
| GATGCAAAACCAGTATAGGA+AGG | - | chr5.1:71922922-71922941 | MS.gene017030:CDS | 40.0% | |
| GCAGGTTGTAGTATGCTTAT+GGG | - | chr5.1:71922337-71922356 | MS.gene017030:CDS | 40.0% | |
| GTTAATATTGCAACTGCGGT+TGG | - | chr5.1:71921852-71921871 | MS.gene017030:CDS | 40.0% | |
| TAACCGCTGCAACAACTATA+TGG | - | chr5.1:71921557-71921576 | MS.gene017030:intron | 40.0% | |
| TCAAGAGGGTCCTATATTTG+GGG | + | chr5.1:71922030-71922049 | None:intergenic | 40.0% | |
| TCACCTTGTTAAGTGTTTCG+TGG | - | chr5.1:71922721-71922740 | MS.gene017030:intron | 40.0% | |
| TCATACCTTTCGTAGAGAAC+CGG | + | chr5.1:71922863-71922882 | None:intergenic | 40.0% | |
| TCTCAAGAGGGTCCTATATT+TGG | + | chr5.1:71922032-71922051 | None:intergenic | 40.0% | |
| TGCAGGTTGTAGTATGCTTA+TGG | - | chr5.1:71922336-71922355 | MS.gene017030:CDS | 40.0% | |
| TTGCTTAGCAAAATCCCCAA+AGG | - | chr5.1:71922956-71922975 | MS.gene017030:CDS | 40.0% | |
| TTTCTTTCTGTAGTGACAGG+AGG | - | chr5.1:71921787-71921806 | MS.gene017030:intron | 40.0% | |
| ! | TGTTCTGCTACTTGCAATGA+TGG | - | chr5.1:71922144-71922163 | MS.gene017030:intron | 40.0% |
| !! | AACCGAGTTTGCTGTTATCT+CGG | - | chr5.1:71922668-71922687 | MS.gene017030:CDS | 40.0% |
| ATCCCCAAAGGAAAGAAGCT+TGG | - | chr5.1:71922968-71922987 | MS.gene017030:CDS | 45.0% | |
| CAAGAGGGTCCTATATTTGG+GGG | + | chr5.1:71922029-71922048 | None:intergenic | 45.0% | |
| CACCGAGATAACAGCAAACT+CGG | + | chr5.1:71922673-71922692 | None:intergenic | 45.0% | |
| CAGAATCCACCTTCCTATAC+TGG | + | chr5.1:71922934-71922953 | None:intergenic | 45.0% | |
| CATACCTTTCGTAGAGAACC+GGG | + | chr5.1:71922862-71922881 | None:intergenic | 45.0% | |
| CCACCTAAAATATGGTGCAC+AGG | + | chr5.1:71921384-71921403 | None:intergenic | 45.0% | |
| CTGAGGTTAACCGTGGTTTA+AGG | - | chr5.1:71921877-71921896 | MS.gene017030:intron | 45.0% | |
| GAATAACCTGCTAAACACGC+CGG | + | chr5.1:71921677-71921696 | None:intergenic | 45.0% | |
| GAGCCATATAGTTGTTGCAG+CGG | + | chr5.1:71921563-71921582 | None:intergenic | 45.0% | |
| GAGCTAGGCATAGAAGTGAT+AGG | + | chr5.1:71921612-71921631 | None:intergenic | 45.0% | |
| GCAAAACCAGTATAGGAAGG+TGG | - | chr5.1:71922925-71922944 | MS.gene017030:CDS | 45.0% | |
| GTTGTAGTATGCTTATGGGC+TGG | - | chr5.1:71922341-71922360 | MS.gene017030:CDS | 45.0% | |
| TAGCTGCTGATGTCATGTTG+TGG | - | chr5.1:71921506-71921525 | MS.gene017030:intron | 45.0% | |
| TGCTGATGTCATGTTGTGGA+GGG | - | chr5.1:71921510-71921529 | MS.gene017030:intron | 45.0% | |
| ! | ACCAAACGAGGAGCTTTTGA+TGG | + | chr5.1:71921813-71921832 | None:intergenic | 45.0% |
| ! | CAGTATAGGAAGGTGGATTC+TGG | - | chr5.1:71922932-71922951 | MS.gene017030:CDS | 45.0% |
| ! | GGTGTTCAGAAGCTTTTCAG+CGG | + | chr5.1:71921256-71921275 | None:intergenic | 45.0% |
| !! | CCTGTGCACCATATTTTAGG+TGG | - | chr5.1:71921381-71921400 | MS.gene017030:intron | 45.0% |
| !! | GTGCACCATATTTTAGGTGG+TGG | - | chr5.1:71921384-71921403 | MS.gene017030:intron | 45.0% |
| !! | TTTGCTGTTATCTCGGTGTG+TGG | - | chr5.1:71922675-71922694 | MS.gene017030:CDS | 45.0% |
| AAAGCTTCTGAACACCCTCG+TGG | - | chr5.1:71921260-71921279 | MS.gene017030:CDS | 50.0% | |
| AACACCCTCGTGGAAACACT+TGG | - | chr5.1:71921270-71921289 | MS.gene017030:CDS | 50.0% | |
| CTGCTGATGTCATGTTGTGG+AGG | - | chr5.1:71921509-71921528 | MS.gene017030:intron | 50.0% | |
| GAGGGACAAGAAGATCTCTG+CGG | - | chr5.1:71921528-71921547 | MS.gene017030:intron | 50.0% | |
| GCCATCAAAAGCTCCTCGTT+TGG | - | chr5.1:71921809-71921828 | MS.gene017030:intron | 50.0% | |
| TCTTTCGGGAGAACCAAACG+AGG | + | chr5.1:71921825-71921844 | None:intergenic | 50.0% | |
| TGTTGCTGCACATACACTCC+CGG | - | chr5.1:71922841-71922860 | MS.gene017030:CDS | 50.0% | |
| ! | GTTGGTACTGAGGTTAACCG+TGG | - | chr5.1:71921870-71921889 | MS.gene017030:CDS | 50.0% |
| !! | TATGGGCTGGTGCTGTGATT+GGG | - | chr5.1:71922354-71922373 | MS.gene017030:CDS | 50.0% |
| !! | TTATGGGCTGGTGCTGTGAT+TGG | - | chr5.1:71922353-71922372 | MS.gene017030:CDS | 50.0% |
| ATGCTTCCGGCGTGTTTAGC+AGG | - | chr5.1:71921668-71921687 | MS.gene017030:intron | 55.0% | |
| CACTCCCGGTTCTCTACGAA+AGG | - | chr5.1:71922855-71922874 | MS.gene017030:CDS | 55.0% | |
| CTACCTCCGCCCCCAAATAT+AGG | - | chr5.1:71922017-71922036 | MS.gene017030:intron | 55.0% | |
| CTCGCCAAGTGTTTCCACGA+GGG | + | chr5.1:71921277-71921296 | None:intergenic | 55.0% | |
| CTTGGCGAGAGGCAAAAGTC+TGG | - | chr5.1:71921288-71921307 | MS.gene017030:CDS | 55.0% | |
| GAGGGTCCTATATTTGGGGG+CGG | + | chr5.1:71922026-71922045 | None:intergenic | 55.0% | |
| TCGTGGAAACACTTGGCGAG+AGG | - | chr5.1:71921277-71921296 | MS.gene017030:CDS | 55.0% | |
| TCTCGCCAAGTGTTTCCACG+AGG | + | chr5.1:71921278-71921297 | None:intergenic | 55.0% | |
| ! | TGCAACTGCGGTTGGTACTG+AGG | - | chr5.1:71921860-71921879 | MS.gene017030:CDS | 55.0% |
| !! | CTGGTGCTGTGATTGGGAAC+TGG | - | chr5.1:71922360-71922379 | MS.gene017030:CDS | 55.0% |
| GGTCCTATATTTGGGGGCGG+AGG | + | chr5.1:71922023-71922042 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 71921237 | 71922994 | 71921237 | ID=MS.gene017030 |
| chr5.1 | mRNA | 71921237 | 71922994 | 71921237 | ID=MS.gene017030.t1;Parent=MS.gene017030 |
| chr5.1 | exon | 71922820 | 71922994 | 71922820 | ID=MS.gene017030.t1.exon1;Parent=MS.gene017030.t1 |
| chr5.1 | CDS | 71922820 | 71922994 | 71922820 | ID=cds.MS.gene017030.t1;Parent=MS.gene017030.t1 |
| chr5.1 | exon | 71922542 | 71922722 | 71922542 | ID=MS.gene017030.t1.exon2;Parent=MS.gene017030.t1 |
| chr5.1 | CDS | 71922542 | 71922722 | 71922542 | ID=cds.MS.gene017030.t1;Parent=MS.gene017030.t1 |
| chr5.1 | exon | 71922284 | 71922431 | 71922284 | ID=MS.gene017030.t1.exon3;Parent=MS.gene017030.t1 |
| chr5.1 | CDS | 71922284 | 71922431 | 71922284 | ID=cds.MS.gene017030.t1;Parent=MS.gene017030.t1 |
| chr5.1 | exon | 71921821 | 71921890 | 71921821 | ID=MS.gene017030.t1.exon4;Parent=MS.gene017030.t1 |
| chr5.1 | CDS | 71921821 | 71921890 | 71921821 | ID=cds.MS.gene017030.t1;Parent=MS.gene017030.t1 |
| chr5.1 | exon | 71921237 | 71921394 | 71921237 | ID=MS.gene017030.t1.exon5;Parent=MS.gene017030.t1 |
| chr5.1 | CDS | 71921237 | 71921394 | 71921237 | ID=cds.MS.gene017030.t1;Parent=MS.gene017030.t1 |
| Gene Sequence |
| Protein sequence |
