Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35007.t1 | RHN42365.1 | 97.3 | 223 | 6 | 0 | 1 | 223 | 1 | 223 | 1.10E-115 | 426 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35007.t1 | Q9LJQ5 | 45.9 | 220 | 116 | 2 | 6 | 223 | 7 | 225 | 6.0e-51 | 202.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35007.t1 | A0A396GU97 | 97.3 | 223 | 6 | 0 | 1 | 223 | 1 | 223 | 7.7e-116 | 426.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049698 | MS.gene35007 | 0.832891 | 7.30E-56 | -1.69E-46 |
| MS.gene05017 | MS.gene35007 | 0.800911 | 1.15E-48 | -1.69E-46 |
| MS.gene054118 | MS.gene35007 | 0.805292 | 1.43E-49 | -1.69E-46 |
| MS.gene058909 | MS.gene35007 | 0.846563 | 2.01E-59 | -1.69E-46 |
| MS.gene058912 | MS.gene35007 | 0.844739 | 6.27E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene22220 | MS.gene35007 | PPI |
| MS.gene47676 | MS.gene35007 | PPI |
| MS.gene35007 | MS.gene038238 | PPI |
| MS.gene46954 | MS.gene35007 | PPI |
| MS.gene47993 | MS.gene35007 | PPI |
| MS.gene019156 | MS.gene35007 | PPI |
| MS.gene017030 | MS.gene35007 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35007.t1 | MTR_1g109630 | 45.918 | 196 | 102 | 1 | 26 | 221 | 13 | 204 | 1.72e-61 | 191 |
| MS.gene35007.t1 | MTR_8g099060 | 35.821 | 201 | 129 | 0 | 21 | 221 | 58 | 258 | 6.69e-50 | 163 |
| MS.gene35007.t1 | MTR_3g449880 | 37.949 | 195 | 121 | 0 | 9 | 203 | 31 | 225 | 9.61e-48 | 157 |
| MS.gene35007.t1 | MTR_5g090340 | 40.609 | 197 | 115 | 1 | 21 | 215 | 87 | 283 | 4.07e-47 | 157 |
| MS.gene35007.t1 | MTR_5g090340 | 40.609 | 197 | 115 | 1 | 21 | 215 | 90 | 286 | 4.70e-47 | 157 |
| MS.gene35007.t1 | MTR_8g028450 | 37.745 | 204 | 123 | 1 | 21 | 220 | 62 | 265 | 6.83e-46 | 153 |
| MS.gene35007.t1 | MTR_1g099500 | 32.110 | 218 | 146 | 1 | 4 | 219 | 32 | 249 | 1.86e-42 | 144 |
| MS.gene35007.t1 | MTR_3g449880 | 37.952 | 166 | 103 | 0 | 38 | 203 | 38 | 203 | 2.26e-37 | 130 |
| MS.gene35007.t1 | MTR_3g062910 | 26.009 | 223 | 149 | 2 | 3 | 211 | 17 | 237 | 2.89e-32 | 117 |
| MS.gene35007.t1 | MTR_4g014700 | 28.502 | 207 | 148 | 0 | 17 | 223 | 3 | 209 | 1.30e-27 | 104 |
| MS.gene35007.t1 | MTR_1g107445 | 29.208 | 202 | 143 | 0 | 20 | 221 | 1 | 202 | 1.29e-21 | 89.0 |
| MS.gene35007.t1 | MTR_5g018250 | 29.798 | 198 | 128 | 2 | 33 | 222 | 29 | 223 | 2.22e-21 | 88.6 |
| MS.gene35007.t1 | MTR_6g012460 | 29.730 | 185 | 130 | 0 | 37 | 221 | 13 | 197 | 8.07e-21 | 86.7 |
| MS.gene35007.t1 | MTR_5g018080 | 27.007 | 137 | 100 | 0 | 40 | 176 | 18 | 154 | 3.37e-15 | 70.9 |
| MS.gene35007.t1 | MTR_5g018190 | 26.712 | 146 | 107 | 0 | 41 | 186 | 284 | 429 | 1.66e-14 | 72.0 |
| MS.gene35007.t1 | MTR_5g018110 | 27.737 | 137 | 99 | 0 | 40 | 176 | 344 | 480 | 1.81e-14 | 72.0 |
| MS.gene35007.t1 | MTR_6g012460 | 31.818 | 132 | 90 | 0 | 37 | 168 | 13 | 144 | 8.27e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35007.t1 | AT3G18260 | 48.416 | 221 | 111 | 2 | 5 | 223 | 6 | 225 | 9.08e-79 | 236 |
| MS.gene35007.t1 | AT2G46170 | 40.094 | 212 | 127 | 0 | 9 | 220 | 40 | 251 | 1.12e-52 | 170 |
| MS.gene35007.t1 | AT4G23630 | 35.821 | 201 | 129 | 0 | 21 | 221 | 73 | 273 | 9.60e-48 | 158 |
| MS.gene35007.t1 | AT4G23630 | 35.821 | 201 | 129 | 0 | 21 | 221 | 73 | 273 | 9.60e-48 | 158 |
| MS.gene35007.t1 | AT3G10260 | 31.963 | 219 | 149 | 0 | 3 | 221 | 27 | 245 | 3.91e-47 | 156 |
| MS.gene35007.t1 | AT3G10260 | 31.963 | 219 | 149 | 0 | 3 | 221 | 27 | 245 | 3.91e-47 | 156 |
| MS.gene35007.t1 | AT4G11220 | 34.328 | 201 | 132 | 0 | 21 | 221 | 69 | 269 | 6.54e-47 | 156 |
| MS.gene35007.t1 | AT3G10260 | 31.963 | 219 | 149 | 0 | 3 | 221 | 47 | 265 | 7.69e-47 | 156 |
| MS.gene35007.t1 | AT3G61560 | 37.000 | 200 | 126 | 0 | 21 | 220 | 52 | 251 | 2.15e-45 | 152 |
| MS.gene35007.t1 | AT3G61560 | 37.000 | 200 | 126 | 0 | 21 | 220 | 52 | 251 | 2.15e-45 | 152 |
| MS.gene35007.t1 | AT5G41600 | 32.195 | 205 | 135 | 1 | 21 | 221 | 52 | 256 | 1.44e-41 | 142 |
| MS.gene35007.t1 | AT1G64090 | 34.171 | 199 | 127 | 1 | 21 | 215 | 48 | 246 | 4.62e-41 | 140 |
| MS.gene35007.t1 | AT1G64090 | 31.481 | 216 | 128 | 2 | 21 | 216 | 48 | 263 | 2.72e-37 | 131 |
| MS.gene35007.t1 | AT4G01230 | 34.783 | 207 | 132 | 1 | 7 | 213 | 40 | 243 | 1.71e-36 | 128 |
| MS.gene35007.t1 | AT1G68230 | 33.175 | 211 | 135 | 2 | 13 | 221 | 7 | 213 | 2.60e-36 | 127 |
| MS.gene35007.t1 | AT4G01230 | 33.981 | 206 | 131 | 2 | 8 | 213 | 41 | 241 | 3.08e-33 | 120 |
| MS.gene35007.t1 | AT3G61560 | 40.136 | 147 | 88 | 0 | 21 | 167 | 52 | 198 | 5.41e-32 | 115 |
| MS.gene35007.t1 | AT2G46170 | 40.876 | 137 | 81 | 0 | 9 | 145 | 40 | 176 | 2.30e-29 | 108 |
| MS.gene35007.t1 | AT3G10915 | 25.822 | 213 | 157 | 1 | 9 | 220 | 12 | 224 | 3.61e-25 | 99.0 |
| MS.gene35007.t1 | AT3G54120 | 31.250 | 192 | 132 | 0 | 14 | 205 | 1 | 192 | 1.33e-24 | 96.7 |
| MS.gene35007.t1 | AT3G10915 | 26.425 | 193 | 142 | 0 | 28 | 220 | 57 | 249 | 1.35e-24 | 97.8 |
| MS.gene35007.t1 | AT3G10915 | 25.701 | 214 | 157 | 2 | 9 | 220 | 12 | 225 | 1.58e-23 | 94.4 |
| MS.gene35007.t1 | AT2G15280 | 25.888 | 197 | 146 | 0 | 25 | 221 | 2 | 198 | 8.84e-23 | 92.0 |
| MS.gene35007.t1 | AT3G19460 | 30.508 | 177 | 121 | 2 | 29 | 204 | 14 | 189 | 1.20e-22 | 91.7 |
| MS.gene35007.t1 | AT3G19460 | 30.508 | 177 | 121 | 2 | 29 | 204 | 14 | 189 | 1.20e-22 | 91.7 |
| MS.gene35007.t1 | AT3G19460 | 30.508 | 177 | 121 | 2 | 29 | 204 | 14 | 189 | 1.20e-22 | 91.7 |
| MS.gene35007.t1 | AT1G68230 | 34.810 | 158 | 97 | 2 | 13 | 168 | 7 | 160 | 2.88e-22 | 89.4 |
| MS.gene35007.t1 | AT3G10915 | 24.868 | 189 | 142 | 0 | 32 | 220 | 4 | 192 | 2.08e-19 | 82.8 |
| MS.gene35007.t1 | AT3G10915 | 25.137 | 183 | 137 | 0 | 38 | 220 | 9 | 191 | 3.33e-19 | 82.4 |
| MS.gene35007.t1 | AT3G19460 | 28.194 | 227 | 121 | 4 | 29 | 221 | 14 | 232 | 1.41e-18 | 81.6 |
| MS.gene35007.t1 | AT3G19460 | 28.194 | 227 | 121 | 4 | 29 | 221 | 14 | 232 | 1.41e-18 | 81.6 |
| MS.gene35007.t1 | AT3G10915 | 23.305 | 236 | 157 | 3 | 9 | 220 | 12 | 247 | 2.41e-18 | 81.3 |
| MS.gene35007.t1 | AT3G19460 | 26.484 | 219 | 119 | 3 | 37 | 221 | 6 | 216 | 1.77e-14 | 70.1 |
| MS.gene35007.t1 | AT3G19460 | 26.484 | 219 | 119 | 3 | 37 | 221 | 6 | 216 | 1.77e-14 | 70.1 |
| MS.gene35007.t1 | AT2G23640 | 23.404 | 188 | 141 | 1 | 37 | 221 | 16 | 203 | 1.37e-13 | 67.4 |
Find 41 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTGGGATAACATTAATT+TGG | 0.217906 | 4.4:+17205825 | MS.gene35007:CDS |
| ATTCTTGTAAAACAGTTTCT+AGG | 0.234459 | 4.4:-17206358 | None:intergenic |
| GAAGGAACATTCTTAGTAAT+TGG | 0.237845 | 4.4:-17206424 | None:intergenic |
| TTTATCAATTTGCTATATAT+TGG | 0.250297 | 4.4:+17206627 | MS.gene35007:CDS |
| TCTGATTCTGATGATGAAAT+TGG | 0.270683 | 4.4:+17205295 | MS.gene35007:CDS |
| AAGCCACTTCATGAAATTCT+TGG | 0.343549 | 4.4:+17205349 | MS.gene35007:CDS |
| TGTACTCAACAACCTCAAAT+AGG | 0.360635 | 4.4:-17205850 | None:intergenic |
| CTCTATATATTGTCAGTGAT+TGG | 0.375744 | 4.4:+17206591 | MS.gene35007:CDS |
| GGACCTACCAATATTTCTTC+TGG | 0.380270 | 4.4:+17206463 | MS.gene35007:CDS |
| TATGATACCAGAAGAAATAT+TGG | 0.384599 | 4.4:-17206470 | None:intergenic |
| ATTAATTTGGTTCCTATTTG+AGG | 0.387542 | 4.4:+17205838 | MS.gene35007:CDS |
| TCATATCGATCATACACATT+TGG | 0.407652 | 4.4:-17206857 | None:intergenic |
| GAAATTCTTGGTGGAGGAAA+AGG | 0.413815 | 4.4:+17205361 | MS.gene35007:CDS |
| TAGTGGCTGATGTGTTGTTA+TGG | 0.416856 | 4.4:+17205774 | MS.gene35007:intron |
| TGAGGAAGAAATTAACAATC+TGG | 0.442280 | 4.4:+17206877 | MS.gene35007:CDS |
| CAAATTGATAAAGTTGAAGT+AGG | 0.453688 | 4.4:-17206616 | None:intergenic |
| CACTTGCAGATATCTTGAAA+TGG | 0.455203 | 4.4:+17205936 | MS.gene35007:CDS |
| GGACAATGAAAGCAAGCTCT+TGG | 0.461016 | 4.4:-17206388 | None:intergenic |
| TATCACAAGCATTGTGGTGA+TGG | 0.477503 | 4.4:-17205900 | None:intergenic |
| ATCTGAGGAAGAAATATAGA+AGG | 0.482017 | 4.4:+17206918 | MS.gene35007:CDS |
| CAATGCTTGTGATATACCTA+TGG | 0.488547 | 4.4:+17205909 | MS.gene35007:CDS |
| GAAGAAATTAACAATCTGGC+TGG | 0.496033 | 4.4:+17206881 | MS.gene35007:CDS |
| CCACCAAGAATTTCATGAAG+TGG | 0.510908 | 4.4:-17205352 | None:intergenic |
| CCACTTCATGAAATTCTTGG+TGG | 0.515383 | 4.4:+17205352 | MS.gene35007:CDS |
| GTAATTGGTTCAATCTTCTG+TGG | 0.519552 | 4.4:-17206409 | None:intergenic |
| CTTCATGAAATTCTTGGTGG+AGG | 0.540204 | 4.4:+17205355 | MS.gene35007:CDS |
| TGGCTGATGTGTTGTTATGG+AGG | 0.568189 | 4.4:+17205777 | MS.gene35007:CDS |
| GGCTGATGTGTTGTTATGGA+GGG | 0.580296 | 4.4:+17205778 | MS.gene35007:CDS |
| CAATCACTGACAATATATAG+AGG | 0.583298 | 4.4:-17206590 | None:intergenic |
| TATCTGCAAGTGTAGACCAT+AGG | 0.602747 | 4.4:-17205925 | None:intergenic |
| AATTTCATCATCAGAATCAG+AGG | 0.612944 | 4.4:-17205293 | None:intergenic |
| AATTCCACGAGGACCAGTGA+AGG | 0.618414 | 4.4:+17206964 | MS.gene35007:CDS |
| AAATGTGTATGATCGATATG+AGG | 0.624479 | 4.4:+17206859 | MS.gene35007:CDS |
| ATACCAGAAGAAATATTGGT+AGG | 0.628139 | 4.4:-17206466 | None:intergenic |
| GACATGTCATAGTAGATCTG+AGG | 0.630232 | 4.4:+17206903 | MS.gene35007:CDS |
| ATGTTCCTTCACATATCGTG+TGG | 0.630823 | 4.4:+17206437 | MS.gene35007:CDS |
| CCTTCACATATCGTGTGGAA+CGG | 0.638584 | 4.4:+17206442 | MS.gene35007:CDS |
| CCGTTCCACACGATATGTGA+AGG | 0.648767 | 4.4:-17206442 | None:intergenic |
| TAGGTATATCACAAGCATTG+TGG | 0.704281 | 4.4:-17205906 | None:intergenic |
| AAAACAGTTTCTAGGAACTG+CGG | 0.706304 | 4.4:-17206350 | None:intergenic |
| TATCTCAACAAAATTCCACG+AGG | 0.793532 | 4.4:+17206953 | MS.gene35007:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACTTAGTATATATATTTAT+TGG | - | chr4.4:17206793-17206812 | None:intergenic | 10.0% |
| !! | ATAAATTTAAAAATGTCATT+TGG | - | chr4.4:17206279-17206298 | None:intergenic | 10.0% |
| !! | AGTTACAATTTAAGAATTTA+AGG | - | chr4.4:17205563-17205582 | None:intergenic | 15.0% |
| !! | GAAAATAAGTTTAAAAAGAA+AGG | - | chr4.4:17206555-17206574 | None:intergenic | 15.0% |
| !! | GCTATTAAAAAAATGAATTA+AGG | + | chr4.4:17206672-17206691 | MS.gene35007:intron | 15.0% |
| !! | TTATTAATTCACAATTATGA+GGG | - | chr4.4:17205979-17205998 | None:intergenic | 15.0% |
| !! | TTTATTAATTCACAATTATG+AGG | - | chr4.4:17205980-17205999 | None:intergenic | 15.0% |
| !!! | TAAATTTTATATTTCAGGAA+TGG | + | chr4.4:17206326-17206345 | MS.gene35007:intron | 15.0% |
| !!! | TGATTTTATTTTTGTGTATA+TGG | - | chr4.4:17205536-17205555 | None:intergenic | 15.0% |
| !!! | TTTATCAATTTGCTATATAT+TGG | + | chr4.4:17206627-17206646 | MS.gene35007:CDS | 15.0% |
| !! | AAAAAAATGAATTAAGGAAG+AGG | + | chr4.4:17206678-17206697 | MS.gene35007:intron | 20.0% |
| !! | ATGAATTGTTCATAATGATT+TGG | + | chr4.4:17205739-17205758 | MS.gene35007:intron | 20.0% |
| !! | CCTGAAATATAAAATTTAAC+AGG | - | chr4.4:17206324-17206343 | None:intergenic | 20.0% |
| !! | GTGAATTAATAAAATGTTTG+AGG | + | chr4.4:17205987-17206006 | MS.gene35007:intron | 20.0% |
| !! | TAAACTAATTAGAATGATAG+TGG | + | chr4.4:17206228-17206247 | MS.gene35007:intron | 20.0% |
| !! | TTAAATTGTAACTTACTCTA+TGG | + | chr4.4:17205570-17205589 | MS.gene35007:intron | 20.0% |
| !!! | ATATGTAACAGCTTTTATTA+AGG | + | chr4.4:17206186-17206205 | MS.gene35007:intron | 20.0% |
| !!! | CCTGTTAAATTTTATATTTC+AGG | + | chr4.4:17206321-17206340 | MS.gene35007:intron | 20.0% |
| ! | ATTCTTGTAAAACAGTTTCT+AGG | - | chr4.4:17206361-17206380 | None:intergenic | 25.0% |
| ! | CAAATTGATAAAGTTGAAGT+AGG | - | chr4.4:17206619-17206638 | None:intergenic | 25.0% |
| ! | GGAAAATGAAAGTTAACAAA+AGG | + | chr4.4:17205475-17205494 | MS.gene35007:intron | 25.0% |
| ! | TATGATACCAGAAGAAATAT+TGG | - | chr4.4:17206473-17206492 | None:intergenic | 25.0% |
| ! | TATTGAGGCAAATAAGATAA+TGG | - | chr4.4:17206109-17206128 | None:intergenic | 25.0% |
| !! | ATTAATTTGGTTCCTATTTG+AGG | + | chr4.4:17205838-17205857 | MS.gene35007:CDS | 25.0% |
| !!! | AAAATGTCATTTGGTTTGTA+AGG | - | chr4.4:17206270-17206289 | None:intergenic | 25.0% |
| !!! | TTCATGCTATTTTTGTTTGT+GGG | - | chr4.4:17205455-17205474 | None:intergenic | 25.0% |
| AAACCTTATCAACCATAAAG+AGG | - | chr4.4:17206818-17206837 | None:intergenic | 30.0% | |
| AAATGTGTATGATCGATATG+AGG | + | chr4.4:17206859-17206878 | MS.gene35007:CDS | 30.0% | |
| AATTTCATCATCAGAATCAG+AGG | - | chr4.4:17205296-17205315 | None:intergenic | 30.0% | |
| ATACCAGAAGAAATATTGGT+AGG | - | chr4.4:17206469-17206488 | None:intergenic | 30.0% | |
| ATACTAAGTTGTCCTCTTTA+TGG | + | chr4.4:17206803-17206822 | MS.gene35007:intron | 30.0% | |
| ATCTGAGGAAGAAATATAGA+AGG | + | chr4.4:17206918-17206937 | MS.gene35007:CDS | 30.0% | |
| ATTAGAGTCCAATAAAGTGT+TGG | - | chr4.4:17206508-17206527 | None:intergenic | 30.0% | |
| ATTTGTTCTGGCAAAATACA+AGG | - | chr4.4:17205619-17205638 | None:intergenic | 30.0% | |
| CAATCACTGACAATATATAG+AGG | - | chr4.4:17206593-17206612 | None:intergenic | 30.0% | |
| CACAAACAAAAATAGCATGA+AGG | + | chr4.4:17205454-17205473 | MS.gene35007:intron | 30.0% | |
| CACAAATACCAACACTTTAT+TGG | + | chr4.4:17206497-17206516 | MS.gene35007:intron | 30.0% | |
| CTCTATATATTGTCAGTGAT+TGG | + | chr4.4:17206591-17206610 | MS.gene35007:CDS | 30.0% | |
| GAAGGAACATTCTTAGTAAT+TGG | - | chr4.4:17206427-17206446 | None:intergenic | 30.0% | |
| GTGTTCAAAATGACTTATTG+AGG | - | chr4.4:17206124-17206143 | None:intergenic | 30.0% | |
| TCATATCGATCATACACATT+TGG | - | chr4.4:17206860-17206879 | None:intergenic | 30.0% | |
| TGAGGAAGAAATTAACAATC+TGG | + | chr4.4:17206877-17206896 | MS.gene35007:CDS | 30.0% | |
| TGCTTGGGATAACATTAATT+TGG | + | chr4.4:17205825-17205844 | MS.gene35007:CDS | 30.0% | |
| TTTAACAGGCAAAGAAAATG+TGG | - | chr4.4:17206310-17206329 | None:intergenic | 30.0% | |
| TTTGTTCTGGCAAAATACAA+GGG | - | chr4.4:17205618-17205637 | None:intergenic | 30.0% | |
| ! | CAAATAAGATAATGGTAGGA+TGG | - | chr4.4:17206101-17206120 | None:intergenic | 30.0% |
| ! | TATTTTGCCAGAACAAATGA+AGG | + | chr4.4:17205621-17205640 | MS.gene35007:intron | 30.0% |
| ! | TCTGATTCTGATGATGAAAT+TGG | + | chr4.4:17205295-17205314 | MS.gene35007:CDS | 30.0% |
| !! | TTTGGTTGATAAATGTGTAG+TGG | + | chr4.4:17205757-17205776 | MS.gene35007:intron | 30.0% |
| !!! | CTTCATGCTATTTTTGTTTG+TGG | - | chr4.4:17205456-17205475 | None:intergenic | 30.0% |
| !!! | TCATGCTATTTTTGTTTGTG+GGG | - | chr4.4:17205454-17205473 | None:intergenic | 30.0% |
| AAGCCACTTCATGAAATTCT+TGG | + | chr4.4:17205349-17205368 | MS.gene35007:CDS | 35.0% | |
| ACATGAGCTGATAACTTTGA+AGG | + | chr4.4:17206142-17206161 | MS.gene35007:intron | 35.0% | |
| CAATGCTTGTGATATACCTA+TGG | + | chr4.4:17205909-17205928 | MS.gene35007:CDS | 35.0% | |
| CACTTGCAGATATCTTGAAA+TGG | + | chr4.4:17205936-17205955 | MS.gene35007:CDS | 35.0% | |
| GAAGAAATTAACAATCTGGC+TGG | + | chr4.4:17206881-17206900 | MS.gene35007:CDS | 35.0% | |
| GTAAGAGAAAGTGACAAAGA+TGG | - | chr4.4:17205391-17205410 | None:intergenic | 35.0% | |
| TATCTCAACAAAATTCCACG+AGG | + | chr4.4:17206953-17206972 | MS.gene35007:CDS | 35.0% | |
| TGTACTCAACAACCTCAAAT+AGG | - | chr4.4:17205853-17205872 | None:intergenic | 35.0% | |
| TTATAGTCCGGACTCAATTA+AGG | + | chr4.4:17206053-17206072 | MS.gene35007:intron | 35.0% | |
| ! | AAAACAGTTTCTAGGAACTG+CGG | - | chr4.4:17206353-17206372 | None:intergenic | 35.0% |
| ! | GAGGCAAATAAGATAATGGT+AGG | - | chr4.4:17206105-17206124 | None:intergenic | 35.0% |
| ! | GTAATTGGTTCAATCTTCTG+TGG | - | chr4.4:17206412-17206431 | None:intergenic | 35.0% |
| ! | GTGATTTTCTTTTCCTTCAC+TGG | - | chr4.4:17206980-17206999 | None:intergenic | 35.0% |
| ! | TAGGTATATCACAAGCATTG+TGG | - | chr4.4:17205909-17205928 | None:intergenic | 35.0% |
| ! | TCCGGACTATAAGTACTTTT+TGG | - | chr4.4:17206045-17206064 | None:intergenic | 35.0% |
| ! | TGTCCTCTTTATGGTTGATA+AGG | + | chr4.4:17206812-17206831 | MS.gene35007:intron | 35.0% |
| !! | GCCAAAAAGTACTTATAGTC+CGG | + | chr4.4:17206041-17206060 | MS.gene35007:intron | 35.0% |
| AGTGAGTCCTTAATTGAGTC+CGG | - | chr4.4:17206063-17206082 | None:intergenic | 40.0% | |
| ATGTTCCTTCACATATCGTG+TGG | + | chr4.4:17206437-17206456 | MS.gene35007:CDS | 40.0% | |
| CCACCAAGAATTTCATGAAG+TGG | - | chr4.4:17205355-17205374 | None:intergenic | 40.0% | |
| CCACTTCATGAAATTCTTGG+TGG | + | chr4.4:17205352-17205371 | MS.gene35007:CDS | 40.0% | |
| CCTAACACCTTCATTTGTTC+TGG | - | chr4.4:17205631-17205650 | None:intergenic | 40.0% | |
| CTTCATGAAATTCTTGGTGG+AGG | + | chr4.4:17205355-17205374 | MS.gene35007:CDS | 40.0% | |
| GAAATTCTTGGTGGAGGAAA+AGG | + | chr4.4:17205361-17205380 | MS.gene35007:CDS | 40.0% | |
| GACATGTCATAGTAGATCTG+AGG | + | chr4.4:17206903-17206922 | MS.gene35007:CDS | 40.0% | |
| GCAACATATATGCATGCTAG+TGG | - | chr4.4:17206023-17206042 | None:intergenic | 40.0% | |
| GGACCTACCAATATTTCTTC+TGG | + | chr4.4:17206463-17206482 | MS.gene35007:CDS | 40.0% | |
| TATCTGCAAGTGTAGACCAT+AGG | - | chr4.4:17205928-17205947 | None:intergenic | 40.0% | |
| ! | TAGTGGCTGATGTGTTGTTA+TGG | + | chr4.4:17205774-17205793 | MS.gene35007:intron | 40.0% |
| ! | TATCACAAGCATTGTGGTGA+TGG | - | chr4.4:17205903-17205922 | None:intergenic | 40.0% |
| ! | TATCAGCTGCGTTTTTGCTT+GGG | + | chr4.4:17205810-17205829 | MS.gene35007:CDS | 40.0% |
| ! | TCATGAAGTGGCTTTTCATG+TGG | - | chr4.4:17205343-17205362 | None:intergenic | 40.0% |
| !! | CCAGAACAAATGAAGGTGTT+AGG | + | chr4.4:17205628-17205647 | MS.gene35007:intron | 40.0% |
| CCTTCACATATCGTGTGGAA+CGG | + | chr4.4:17206442-17206461 | MS.gene35007:CDS | 45.0% | |
| GGACAATGAAAGCAAGCTCT+TGG | - | chr4.4:17206391-17206410 | None:intergenic | 45.0% | |
| ! | GGCTGATGTGTTGTTATGGA+GGG | + | chr4.4:17205778-17205797 | MS.gene35007:CDS | 45.0% |
| ! | GTATCAGCTGCGTTTTTGCT+TGG | + | chr4.4:17205809-17205828 | MS.gene35007:CDS | 45.0% |
| ! | TGGCTGATGTGTTGTTATGG+AGG | + | chr4.4:17205777-17205796 | MS.gene35007:CDS | 45.0% |
| !!! | ATTTTATTTATTATTTGATT+TGG | + | chr4.4:17205411-17205430 | MS.gene35007:intron | 5.0% |
| AATTCCACGAGGACCAGTGA+AGG | + | chr4.4:17206964-17206983 | MS.gene35007:CDS | 50.0% | |
| CCGTTCCACACGATATGTGA+AGG | - | chr4.4:17206445-17206464 | None:intergenic | 50.0% | |
| ! | TTTTCCTTCACTGGTCCTCG+TGG | - | chr4.4:17206971-17206990 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 17205274 | 17207003 | 17205274 | ID=MS.gene35007 |
| chr4.4 | mRNA | 17205274 | 17207003 | 17205274 | ID=MS.gene35007.t1;Parent=MS.gene35007 |
| chr4.4 | exon | 17205274 | 17205382 | 17205274 | ID=MS.gene35007.t1.exon1;Parent=MS.gene35007.t1 |
| chr4.4 | CDS | 17205274 | 17205382 | 17205274 | ID=cds.MS.gene35007.t1;Parent=MS.gene35007.t1 |
| chr4.4 | exon | 17205777 | 17205957 | 17205777 | ID=MS.gene35007.t1.exon2;Parent=MS.gene35007.t1 |
| chr4.4 | CDS | 17205777 | 17205957 | 17205777 | ID=cds.MS.gene35007.t1;Parent=MS.gene35007.t1 |
| chr4.4 | exon | 17206343 | 17206484 | 17206343 | ID=MS.gene35007.t1.exon3;Parent=MS.gene35007.t1 |
| chr4.4 | CDS | 17206343 | 17206484 | 17206343 | ID=cds.MS.gene35007.t1;Parent=MS.gene35007.t1 |
| chr4.4 | exon | 17206579 | 17206648 | 17206579 | ID=MS.gene35007.t1.exon4;Parent=MS.gene35007.t1 |
| chr4.4 | CDS | 17206579 | 17206648 | 17206579 | ID=cds.MS.gene35007.t1;Parent=MS.gene35007.t1 |
| chr4.4 | exon | 17206834 | 17207003 | 17206834 | ID=MS.gene35007.t1.exon5;Parent=MS.gene35007.t1 |
| chr4.4 | CDS | 17206834 | 17207003 | 17206834 | ID=cds.MS.gene35007.t1;Parent=MS.gene35007.t1 |
| Gene Sequence |
| Protein sequence |
